Query 027466
Match_columns 223
No_of_seqs 123 out of 152
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 10:19:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05770 Ins134_P3_kin: Inosit 100.0 2.5E-76 5.4E-81 535.6 15.5 197 25-221 3-199 (307)
2 PLN02941 inositol-tetrakisphos 100.0 3.1E-59 6.7E-64 427.4 20.8 196 25-220 17-212 (328)
3 TIGR00768 rimK_fam alpha-L-glu 99.1 1E-09 2.2E-14 95.0 14.1 162 45-220 12-191 (277)
4 TIGR02144 LysX_arch Lysine bio 99.1 1.6E-09 3.4E-14 94.9 14.8 161 47-221 13-191 (280)
5 PRK01372 ddl D-alanine--D-alan 98.7 9.3E-07 2E-11 78.5 14.8 156 47-218 26-193 (304)
6 PRK10446 ribosomal protein S6 98.6 1.4E-06 3.1E-11 78.0 15.9 160 48-220 17-200 (300)
7 TIGR01205 D_ala_D_alaTIGR D-al 98.6 9.3E-07 2E-11 78.7 12.3 153 49-215 23-203 (315)
8 PF08443 RimK: RimK-like ATP-g 98.3 1.7E-06 3.7E-11 72.9 6.6 95 115-221 3-105 (190)
9 COG0189 RimK Glutathione synth 98.1 2.3E-05 5E-10 72.1 10.8 136 73-221 77-222 (318)
10 PRK14571 D-alanyl-alanine synt 98.1 3.6E-05 7.9E-10 68.7 11.6 146 49-215 24-182 (299)
11 PRK12767 carbamoyl phosphate s 98.1 2E-05 4.3E-10 70.4 9.9 100 101-213 97-199 (326)
12 PRK06019 phosphoribosylaminoim 98.1 5.3E-05 1.1E-09 70.1 11.9 151 49-214 17-191 (372)
13 PRK07206 hypothetical protein; 98.0 7.4E-05 1.6E-09 69.3 12.7 100 101-213 94-208 (416)
14 TIGR01161 purK phosphoribosyla 98.0 0.00011 2.4E-09 67.0 13.2 143 48-204 13-180 (352)
15 TIGR01142 purT phosphoribosylg 98.0 0.00012 2.6E-09 67.0 12.7 99 101-213 86-196 (380)
16 PRK09288 purT phosphoribosylgl 98.0 0.0001 2.2E-09 67.8 12.0 149 48-213 26-209 (395)
17 PRK02471 bifunctional glutamat 98.0 9.9E-05 2.2E-09 75.0 12.9 145 48-221 436-590 (752)
18 PF13535 ATP-grasp_4: ATP-gras 97.9 2.7E-05 5.9E-10 63.0 6.8 91 113-216 2-103 (184)
19 PRK06849 hypothetical protein; 97.8 0.00035 7.5E-09 64.7 13.2 88 103-202 104-195 (389)
20 PRK14569 D-alanyl-alanine synt 97.8 0.00036 7.7E-09 62.7 12.9 150 49-217 27-188 (296)
21 PRK12458 glutathione synthetas 97.8 0.00013 2.8E-09 67.4 10.2 130 74-218 79-226 (338)
22 PRK05294 carB carbamoyl phosph 97.8 0.00037 7.9E-09 73.1 14.6 87 105-204 659-754 (1066)
23 PRK01966 ddl D-alanyl-alanine 97.8 0.00035 7.7E-09 63.7 12.6 128 74-215 81-219 (333)
24 TIGR03103 trio_acet_GNAT GNAT- 97.8 0.00035 7.6E-09 68.5 13.0 146 44-221 240-395 (547)
25 PRK14572 D-alanyl-alanine synt 97.7 0.0005 1.1E-08 63.2 12.6 127 74-215 88-228 (347)
26 TIGR01369 CPSaseII_lrg carbamo 97.7 0.00088 1.9E-08 70.2 15.4 100 100-213 653-762 (1050)
27 PRK05246 glutathione synthetas 97.7 0.00063 1.4E-08 61.7 12.3 152 48-218 23-219 (316)
28 TIGR01380 glut_syn glutathione 97.7 0.00077 1.7E-08 61.3 12.1 152 48-218 22-218 (312)
29 PRK00885 phosphoribosylamine-- 97.6 0.001 2.2E-08 62.2 13.0 109 90-214 77-199 (420)
30 PRK08462 biotin carboxylase; V 97.6 0.00056 1.2E-08 64.5 10.9 142 42-215 60-218 (445)
31 PRK05586 biotin carboxylase; V 97.5 0.00041 9E-09 65.6 8.9 101 102-216 102-217 (447)
32 PRK12815 carB carbamoyl phosph 97.5 0.00036 7.9E-09 73.2 8.6 96 105-215 660-762 (1068)
33 PRK02186 argininosuccinate lya 97.5 0.0021 4.6E-08 66.2 13.7 94 105-213 97-198 (887)
34 PRK13790 phosphoribosylamine-- 97.4 0.0024 5.2E-08 59.5 12.6 133 47-213 17-159 (379)
35 PRK14016 cyanophycin synthetas 97.4 0.00056 1.2E-08 69.2 8.5 142 48-221 164-313 (727)
36 PF07478 Dala_Dala_lig_C: D-al 97.4 0.0002 4.3E-09 61.6 4.2 78 134-216 6-91 (203)
37 TIGR00877 purD phosphoribosyla 97.3 0.003 6.5E-08 58.9 12.1 107 91-213 80-200 (423)
38 TIGR02068 cya_phycin_syn cyano 97.3 0.0012 2.7E-08 67.9 9.7 102 105-221 203-312 (864)
39 PLN02735 carbamoyl-phosphate s 97.3 0.0061 1.3E-07 64.5 14.6 153 49-215 600-797 (1102)
40 PLN02948 phosphoribosylaminoim 97.3 0.0082 1.8E-07 59.4 14.6 158 27-203 20-204 (577)
41 PRK05294 carB carbamoyl phosph 97.2 0.0031 6.7E-08 66.3 11.5 91 100-203 112-212 (1066)
42 PRK14570 D-alanyl-alanine synt 97.1 0.003 6.4E-08 59.0 9.2 127 74-216 87-229 (364)
43 PRK06524 biotin carboxylase-li 97.1 0.0032 6.9E-08 61.5 9.3 112 91-213 118-237 (493)
44 PRK14568 vanB D-alanine--D-lac 97.0 0.0027 5.8E-08 58.2 8.3 124 74-215 90-222 (343)
45 PRK06111 acetyl-CoA carboxylas 97.0 0.0032 6.8E-08 59.2 8.9 101 101-214 100-215 (450)
46 PLN02735 carbamoyl-phosphate s 96.9 0.0089 1.9E-07 63.3 11.6 153 49-215 49-240 (1102)
47 TIGR01235 pyruv_carbox pyruvat 96.9 0.011 2.4E-07 62.9 12.1 104 100-216 99-217 (1143)
48 TIGR01369 CPSaseII_lrg carbamo 96.9 0.02 4.4E-07 60.2 14.0 141 49-203 32-211 (1050)
49 TIGR00514 accC acetyl-CoA carb 96.7 0.0068 1.5E-07 57.4 8.4 100 103-215 103-216 (449)
50 PRK08591 acetyl-CoA carboxylas 96.7 0.0074 1.6E-07 56.8 8.5 99 103-215 103-216 (451)
51 PRK12833 acetyl-CoA carboxylas 96.7 0.006 1.3E-07 58.4 7.9 100 103-216 106-220 (467)
52 PLN02257 phosphoribosylamine-- 96.7 0.03 6.6E-07 53.5 12.5 124 47-202 52-189 (434)
53 PRK12815 carB carbamoyl phosph 96.6 0.016 3.4E-07 61.2 11.2 141 49-203 33-212 (1068)
54 PRK13789 phosphoribosylamine-- 96.5 0.053 1.1E-06 51.7 13.0 137 45-215 56-206 (426)
55 PRK08654 pyruvate carboxylase 96.5 0.0099 2.2E-07 57.7 8.2 104 100-216 99-217 (499)
56 PRK08463 acetyl-CoA carboxylas 96.5 0.015 3.2E-07 55.9 9.0 104 100-216 98-217 (478)
57 PRK14573 bifunctional D-alanyl 96.3 0.054 1.2E-06 55.3 12.6 151 52-216 478-669 (809)
58 TIGR01435 glu_cys_lig_rel glut 96.3 0.014 3.1E-07 59.5 8.2 81 134-221 487-577 (737)
59 PRK06395 phosphoribosylamine-- 96.2 0.094 2E-06 50.1 12.5 140 45-218 53-207 (435)
60 PRK12999 pyruvate carboxylase; 96.0 0.012 2.6E-07 62.6 5.9 103 100-216 103-221 (1146)
61 KOG1057 Arp2/3 complex-interac 95.9 0.085 1.9E-06 54.2 11.2 180 28-219 39-255 (1018)
62 PRK07178 pyruvate carboxylase 95.6 0.06 1.3E-06 51.7 8.5 102 100-215 98-215 (472)
63 TIGR02712 urea_carbox urea car 95.1 0.097 2.1E-06 56.1 9.2 99 103-215 102-214 (1201)
64 PRK13278 purP 5-formaminoimida 95.0 0.94 2E-05 42.6 14.3 79 103-203 111-201 (358)
65 COG0026 PurK Phosphoribosylami 94.3 0.52 1.1E-05 44.8 10.7 138 52-204 19-182 (375)
66 PRK05784 phosphoribosylamine-- 94.1 1.7 3.8E-05 42.3 14.5 133 47-214 59-216 (486)
67 PF02655 ATP-grasp_3: ATP-gras 92.9 0.21 4.4E-06 41.0 5.0 79 114-214 2-81 (161)
68 PF15632 ATPgrasp_Ter: ATP-gra 92.6 0.45 9.8E-06 44.3 7.3 114 76-202 68-207 (329)
69 COG0439 AccC Biotin carboxylas 92.1 0.49 1.1E-05 45.9 7.2 119 89-221 89-222 (449)
70 PRK13277 5-formaminoimidazole- 90.7 0.25 5.4E-06 46.8 3.5 54 134-202 138-207 (366)
71 PF02786 CPSase_L_D2: Carbamoy 89.1 0.46 1E-05 41.2 3.7 90 115-217 1-104 (211)
72 COG0458 CarB Carbamoylphosphat 88.6 3.1 6.6E-05 40.0 9.1 99 101-214 102-209 (400)
73 PF02222 ATP-grasp: ATP-grasp 87.9 0.32 6.8E-06 41.2 1.9 68 134-206 5-77 (172)
74 COG2232 Predicted ATP-dependen 86.6 6.8 0.00015 37.2 9.9 154 26-215 11-196 (389)
75 PF02955 GSH-S_ATP: Prokaryoti 86.5 0.3 6.6E-06 41.5 1.0 61 137-203 12-80 (173)
76 TIGR02291 rimK_rel_E_lig alpha 83.8 15 0.00032 34.2 10.8 99 112-221 34-172 (317)
77 TIGR01016 sucCoAbeta succinyl- 80.9 1.5 3.2E-05 41.0 3.1 79 133-215 15-115 (386)
78 COG3919 Predicted ATP-grasp en 79.1 1.6 3.4E-05 41.1 2.6 87 108-206 107-204 (415)
79 PRK00696 sucC succinyl-CoA syn 74.4 3.3 7.2E-05 38.7 3.5 73 133-208 15-109 (388)
80 COG0027 PurT Formate-dependent 74.3 10 0.00022 36.0 6.6 141 49-204 27-201 (394)
81 COG1821 Predicted ATP-utilizin 72.6 22 0.00049 32.8 8.2 44 163-218 141-186 (307)
82 COG1181 DdlA D-alanine-D-alani 69.9 69 0.0015 29.6 11.0 157 49-217 26-201 (317)
83 KOG2356 Transcriptional activa 56.9 43 0.00092 31.6 6.9 97 7-109 92-195 (366)
84 KOG0555 Asparaginyl-tRNA synth 48.0 13 0.00028 36.3 2.2 33 183-215 257-289 (545)
85 PF14397 ATPgrasp_ST: Sugar-tr 46.7 78 0.0017 28.6 7.0 89 105-204 16-128 (285)
86 PF02065 Melibiase: Melibiase; 46.2 30 0.00064 33.1 4.4 60 40-103 166-230 (394)
87 PF03133 TTL: Tubulin-tyrosine 43.6 17 0.00038 32.1 2.3 64 136-203 42-109 (292)
88 PF12122 DUF3582: Protein of u 43.2 56 0.0012 25.4 4.8 45 48-97 15-60 (101)
89 PF13481 AAA_25: AAA domain; P 42.8 26 0.00056 28.5 3.0 28 86-113 127-156 (193)
90 cd01125 repA Hexameric Replica 41.9 52 0.0011 28.2 4.9 81 27-110 39-123 (239)
91 PF14972 Mito_morph_reg: Mitoc 37.1 52 0.0011 28.1 4.0 33 76-108 4-41 (165)
92 PRK06067 flagellar accessory p 35.9 83 0.0018 26.8 5.2 40 86-125 107-147 (234)
93 KOG4420 Uncharacterized conser 34.4 33 0.00071 31.8 2.5 69 10-82 3-85 (325)
94 PF13407 Peripla_BP_4: Peripla 33.1 1.3E+02 0.0028 25.1 5.8 63 32-109 1-66 (257)
95 KOG2158 Tubulin-tyrosine ligas 31.2 20 0.00044 35.5 0.7 74 135-214 203-283 (565)
96 cd01122 GP4d_helicase GP4d_hel 30.7 87 0.0019 27.1 4.6 28 86-113 127-155 (271)
97 cd05565 PTS_IIB_lactose PTS_II 30.3 2.2E+02 0.0047 21.9 6.2 78 43-122 14-96 (99)
98 TIGR02237 recomb_radB DNA repa 29.5 98 0.0021 25.6 4.5 26 87-112 85-111 (209)
99 PF01135 PCMT: Protein-L-isoas 29.3 48 0.001 28.7 2.6 26 57-82 124-149 (209)
100 PRK11303 DNA-binding transcrip 29.3 2.3E+02 0.005 24.6 7.0 81 25-106 57-149 (328)
101 cd06353 PBP1_BmpA_Med_like Per 29.1 1.9E+02 0.0041 25.3 6.4 83 32-117 2-103 (258)
102 PF06228 ChuX_HutX: Haem utili 27.8 53 0.0012 27.1 2.5 18 198-215 106-124 (141)
103 PF13380 CoA_binding_2: CoA bi 26.8 2E+02 0.0043 22.3 5.5 74 30-107 4-88 (116)
104 PRK13942 protein-L-isoaspartat 26.5 86 0.0019 26.7 3.7 23 57-79 128-150 (212)
105 KOG3350 Uncharacterized conser 26.0 1.5E+02 0.0033 26.1 5.1 70 26-115 71-152 (217)
106 PRK10014 DNA-binding transcrip 25.6 2.9E+02 0.0063 24.2 7.0 80 25-105 60-151 (342)
107 PRK04266 fibrillarin; Provisio 25.1 2.5E+02 0.0055 24.4 6.4 71 28-103 96-174 (226)
108 cd00984 DnaB_C DnaB helicase C 25.0 1.1E+02 0.0024 25.8 4.1 28 86-113 110-138 (242)
109 cd02065 B12-binding_like B12 b 24.2 2.2E+02 0.0048 21.2 5.3 20 49-68 19-38 (125)
110 cd07984 LPLAT_LABLAT-like Lyso 24.1 2E+02 0.0044 23.1 5.4 53 46-100 119-182 (192)
111 PRK09361 radB DNA repair and r 23.9 1.6E+02 0.0035 24.7 4.9 26 88-113 97-122 (225)
112 COG3598 RepA RecA-family ATPas 23.2 88 0.0019 30.0 3.3 19 94-112 190-208 (402)
113 TIGR00328 flhB flagellar biosy 22.8 1.7E+02 0.0037 27.5 5.2 62 1-62 213-307 (347)
114 PF06745 KaiC: KaiC; InterPro 22.7 2.4E+02 0.0052 23.7 5.7 30 86-115 102-132 (226)
115 cd01124 KaiC KaiC is a circadi 22.0 1.7E+02 0.0037 23.3 4.5 40 87-126 83-126 (187)
116 PRK14103 trans-aconitate 2-met 21.5 97 0.0021 26.8 3.1 44 29-82 54-97 (255)
117 PF13905 Thioredoxin_8: Thiore 21.5 2.3E+02 0.005 20.0 4.7 38 29-66 3-44 (95)
118 PF07021 MetW: Methionine bios 21.2 71 0.0015 27.9 2.1 69 50-120 49-122 (193)
119 TIGR02417 fruct_sucro_rep D-fr 21.1 4.4E+02 0.0095 22.9 7.3 80 26-106 57-148 (327)
120 cd08616 PI-PLCXD1c Catalytic d 21.0 2.7E+02 0.0059 25.2 6.0 48 56-105 70-121 (290)
121 COG2874 FlaH Predicted ATPases 20.5 99 0.0021 27.9 2.9 91 27-126 54-151 (235)
122 cd01394 radB RadB. The archaea 20.5 1E+02 0.0022 25.7 3.0 24 88-111 93-116 (218)
No 1
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=100.00 E-value=2.5e-76 Score=535.63 Aligned_cols=197 Identities=50% Similarity=0.845 Sum_probs=170.5
Q ss_pred CCCCcEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEe
Q 027466 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (223)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI 104 (223)
..+++++|||||++||+++|+|++|..+|+++||+||+||+++||++|||||+||||+||..|+++||+|+++||+++||
T Consensus 3 ~~~~~~~VGy~l~~kK~~~~~~~~~~~~~~~~gi~~v~id~~~pl~~QgpfDvIlHKltd~~~~~~l~~y~~~hP~v~vi 82 (307)
T PF05770_consen 3 TQRKRFRVGYALSPKKQKSFIQPSFIDLARSRGIDFVPIDLSKPLEEQGPFDVILHKLTDEDWVQQLEEYIKKHPEVVVI 82 (307)
T ss_dssp GGGTT-EEEEE--HHHHHHHCCCHHCCCCCCCTTEEEEEECCSSSGCC--SCEEEE--CHCHHHHHHHHHHHH-TTSEEE
T ss_pred ccccceEEEEEECHHHHHHhhHHHHHHHHHhcCCEEEEcCCCCCcccCCCcEEEEEeCCCHHHHHHHHHHHHHCCCeEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEec
Q 027466 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (223)
Q Consensus 105 DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~ 184 (223)
||+++|++|+||.+|++.+++++...+.+.+++|+|++++++.+++.+.++++||+||+||||++||||++||+||||||
T Consensus 83 Dp~~~i~~l~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agL~fPlI~KPlvA~Gsa~SH~Maivf~ 162 (307)
T PF05770_consen 83 DPPDAIRPLLDRQSMLQVLSELELSEGDGRIRVPKFVVINSDAESLPELLKEAGLKFPLICKPLVACGSADSHKMAIVFN 162 (307)
T ss_dssp T-HHHHHHHCCHHCCHHHHHHHHHHHTCTTEE-S-EEEESSSHCCHHHHHHCTTS-SSEEEEESB-SSTSCCCEEEEE-S
T ss_pred cCHHHHHHHHCHHHHHHHHHHhhccccCCcccCCceEEEcCCHHHHHHHHHHCCCcccEEeeehhhcCCccceEEEEEEC
Confidence 99999999999999999999988777778999999999987778889999999999999999999999999999999999
Q ss_pred cccccCCCCceeEEEeeecCcEEEEEEEecceEEEEE
Q 027466 185 QYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 185 ~~gL~~l~~P~VlQeFINH~gvlfKVYViG~~~~v~~ 221 (223)
++||++|++|||+||||||||+|||||||||+++++.
T Consensus 163 ~~gL~~L~~P~VlQeFVNHggvLfKVyVvGd~v~~v~ 199 (307)
T PF05770_consen 163 EEGLKDLKPPCVLQEFVNHGGVLFKVYVVGDKVFVVK 199 (307)
T ss_dssp GGGGTT--SSEEEEE----TTEEEEEEEETTEEEEEE
T ss_pred HHHHhhcCCCEEEEEeecCCCEEEEEEEecCEEEEEE
Confidence 9999999999999999999999999999999999974
No 2
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=100.00 E-value=3.1e-59 Score=427.36 Aligned_cols=196 Identities=69% Similarity=1.011 Sum_probs=185.3
Q ss_pred CCCCcEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEe
Q 027466 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (223)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI 104 (223)
..+++++|||||++||+++|+|++|+.+|+++||+|++||+++||++|||||+||||+|+..|++.+++|..+||+++||
T Consensus 17 ~~~~~~~vGy~l~~kk~~~~~~~~l~~~~~~~Gi~~v~Id~~~pl~~qgpfDvilhK~~~~~~~~~~~~~~~e~pgv~vi 96 (328)
T PLN02941 17 SQQKRFVVGYALTPKKVKSFLQPSLEALARSKGIDLVAIDPSRPLSEQGPFDVILHKLYGKEWRQQLEEYREKHPDVTVL 96 (328)
T ss_pred ccCCceEEEEEECHHHHHHHhhHHHHHHHHHCCCeEEEecCCCCccccCCcCEEEEecCCHHHHHHHHHHHHHCCCcEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEec
Q 027466 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (223)
Q Consensus 105 DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~ 184 (223)
||+++|+.++||.+|++.|+++...++++.|++|+++++.+...++...++.++++||+||||++||||+.+|.|++|++
T Consensus 97 dp~~ai~~~~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~ 176 (328)
T PLN02941 97 DPPDAIQRLHNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYD 176 (328)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecC
Confidence 99999999999999999999988777777899999999975544455557789999999999999999999999999999
Q ss_pred cccccCCCCceeEEEeeecCcEEEEEEEecceEEEE
Q 027466 185 QYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIF 220 (223)
Q Consensus 185 ~~gL~~l~~P~VlQeFINH~gvlfKVYViG~~~~v~ 220 (223)
++||..+++||++||||||+|++||||||||++.++
T Consensus 177 ~~~L~~l~~p~~lQEfVnh~g~d~RVfVvGd~v~~~ 212 (328)
T PLN02941 177 QEGLSKLEPPLVLQEFVNHGGVLFKVYVVGDYVKCV 212 (328)
T ss_pred HHHHHhcCCcEEEEEecCCCCEEEEEEEECCEEEEE
Confidence 999999999999999999999999999999997544
No 3
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=99.15 E-value=1e-09 Score=94.96 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=115.1
Q ss_pred chhhHHhHHHhcCcEEEEeeCCCC---CCC----CCCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHHhhcCHH
Q 027466 45 LQPKLEGLARNKGILFVAIDQNRP---LSD----QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQ 117 (223)
Q Consensus 45 ~~~~~~~~~~~~gi~fv~iD~~~p---l~~----QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~ 117 (223)
..+.+.+.++++|+.+..+|.+.. +.+ ...+|+|+=...+......+.+..+.. .+.++.|+++++...|+.
T Consensus 12 ~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~dK~ 90 (277)
T TIGR00768 12 DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAVARYLESL-GVPVINSSDAILNAGDKF 90 (277)
T ss_pred HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEechhHhhHHHHHHHHHHC-CCeeeCCHHHHHHHhhHH
Confidence 344688889999999999987533 222 335899987773322223444444544 477888999999999999
Q ss_pred HHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------
Q 027466 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK------- 190 (223)
Q Consensus 118 ~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~------- 190 (223)
.+++.+++. .+.+|+++.+. +.+++.+.+. .+.||+|+||..++|+ ..+.++.+.+.+..
T Consensus 91 ~~~~~l~~~-------gi~~P~t~~~~-~~~~~~~~~~--~~~~p~vvKP~~g~~g---~gv~~i~~~~~l~~~~~~~~~ 157 (277)
T TIGR00768 91 LTSQLLAKA-------GLPQPRTGLAG-SPEEALKLIE--EIGFPVVLKPVFGSWG---RLVSLARDKQAAETLLEHFEQ 157 (277)
T ss_pred HHHHHHHHC-------CCCCCCEEEeC-CHHHHHHHHH--hcCCCEEEEECcCCCC---CceEEEcCHHHHHHHHHHHHH
Confidence 999998863 46789998885 2223333333 4579999999987665 45667888776632
Q ss_pred CC---CceeEEEeeecCc-EEEEEEEecceEEEE
Q 027466 191 LE---PPLVLQEFVNHGM-QMAFGYLADIHYIIF 220 (223)
Q Consensus 191 l~---~P~VlQeFINH~g-vlfKVYViG~~~~v~ 220 (223)
.. .++++||||++.+ .=+.|+++|+++...
T Consensus 158 ~~~~~~~~lvQe~I~~~~~~~~rv~v~~~~~~~~ 191 (277)
T TIGR00768 158 LNGPQNLFYVQEYIKKPGGRDIRVFVVGDEVIAA 191 (277)
T ss_pred hcccCCcEEEEeeecCCCCceEEEEEECCEEEEE
Confidence 22 3899999999874 789999999987543
No 4
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=99.14 E-value=1.6e-09 Score=94.87 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=110.5
Q ss_pred hhHHhHHHhcCcEEEEeeCCCC---CC---CC-CCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHHhhcCHHHH
Q 027466 47 PKLEGLARNKGILFVAIDQNRP---LS---DQ-GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSM 119 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~p---l~---~Q-gpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~ 119 (223)
+.+.+.++++|++...+|.+.. +. .+ .++|+++=.-........+....+.+ .+.++.|+++++...|+..+
T Consensus 13 ~~l~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~~~~~~~~~~~~~le~~-g~~~~n~~~~~~~~~dK~~~ 91 (280)
T TIGR02144 13 KMLIEELEKLGLPYRKIYVPALPLPFGERPKELEDVDVAIIRCVSQSRALYSARLLEAL-GVPVINSSHVIEACGDKIFT 91 (280)
T ss_pred HHHHHHHHHcCCceEEEEhhheEEEcCCCccccCCCCEEEEcCcchhhHHHHHHHHHHC-CCcEECcHHHHHHHhhHHHH
Confidence 3567788999999998877642 11 12 36898775522211111222333333 57789999999999999999
Q ss_pred HHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC---------
Q 027466 120 LQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK--------- 190 (223)
Q Consensus 120 ~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~--------- 190 (223)
++.+++. .+.+|+++.+. +..+..+.. +.+.||+|+||...+| +..+.++.+.+.+.+
T Consensus 92 ~~~l~~~-------gip~P~t~~~~-~~~~~~~~~--~~~~~P~vvKP~~g~~---g~gv~~v~~~~~l~~~~~~~~~~~ 158 (280)
T TIGR02144 92 YLKLAKA-------GVPTPRTYLAF-DREAALKLA--EALGYPVVLKPVIGSW---GRLVALIRDKDELESLLEHKEVLG 158 (280)
T ss_pred HHHHHHC-------CcCCCCeEeeC-CHHHHHHHH--HHcCCCEEEEECcCCC---cCCEEEECCHHHHHHHHHHHHhhc
Confidence 9988753 47789998874 222222222 3467999999988655 456888888776533
Q ss_pred --CCCceeEEEeeecCcEEEEEEEecceEEEEE
Q 027466 191 --LEPPLVLQEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 191 --l~~P~VlQeFINH~gvlfKVYViG~~~~v~~ 221 (223)
...|+++||||.+.+.=+.+||+|+++...+
T Consensus 159 ~~~~~~~ivQefI~~~~~d~~v~vig~~~~~~~ 191 (280)
T TIGR02144 159 GSQHKLFYIQEYINKPGRDIRVFVIGDEAIAAI 191 (280)
T ss_pred CCcCCeEEEEcccCCCCCceEEEEECCEEEEEE
Confidence 1358999999997677799999999875443
No 5
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.65 E-value=9.3e-07 Score=78.52 Aligned_cols=156 Identities=15% Similarity=0.181 Sum_probs=111.7
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCCCC---CCCeeEEEeccCCh-HHHHHHHHHHHhCCCeEEeCC-hhhHHhhcCHHHHHH
Q 027466 47 PKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGK-EWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQ 121 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl~~---QgpfDvILHKltd~-~~~~~lq~y~~~hP~v~VIDP-~~~i~~L~dR~~~~~ 121 (223)
..+....++.|++.+.+|.+..+.+ ...+|+|+=-..+. .-...++.+.+.. .+.++-+ +.++....|+..+.+
T Consensus 26 ~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~k~ 104 (304)
T PRK01372 26 AAVLAALREAGYDAHPIDPGEDIAAQLKELGFDRVFNALHGRGGEDGTIQGLLELL-GIPYTGSGVLASALAMDKLRTKL 104 (304)
T ss_pred HHHHHHHHHCCCEEEEEecCcchHHHhccCCCCEEEEecCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHH
Confidence 3466677889999999998877554 34679998654221 0012345556655 7777766 788999999999988
Q ss_pred HHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCc
Q 027466 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPP 194 (223)
Q Consensus 122 ~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P 194 (223)
.+.+. .+.+|++..+++. ++..... ..+.||+|+||....|+. .+.++.+.+.+.+ ...+
T Consensus 105 ~l~~~-------gIp~p~~~~~~~~-~~~~~~~--~~~~~P~ivKP~~g~~s~---Gv~~v~~~~el~~~~~~~~~~~~~ 171 (304)
T PRK01372 105 VWQAA-------GLPTPPWIVLTRE-EDLLAAI--DKLGLPLVVKPAREGSSV---GVSKVKEEDELQAALELAFKYDDE 171 (304)
T ss_pred HHHHC-------CCCCCCEEEEeCc-chHHHHH--hhcCCCEEEeeCCCCCCC---CEEEeCCHHHHHHHHHHHHhcCCc
Confidence 87753 4889999988632 2222222 357899999999976664 4678889877643 2568
Q ss_pred eeEEEeeecCcEEEEEEEecceEE
Q 027466 195 LVLQEFVNHGMQMAFGYLADIHYI 218 (223)
Q Consensus 195 ~VlQeFINH~gvlfKVYViG~~~~ 218 (223)
+++||||+ |.=|-|.|+|+.+.
T Consensus 172 ~lvEe~i~--G~E~~v~vi~~~~~ 193 (304)
T PRK01372 172 VLVEKYIK--GRELTVAVLGGKAL 193 (304)
T ss_pred EEEEcccC--CEEEEEEEECCCcc
Confidence 99999998 67788999988654
No 6
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=98.64 E-value=1.4e-06 Score=77.98 Aligned_cols=160 Identities=16% Similarity=0.154 Sum_probs=108.3
Q ss_pred hHHhHHHhcCcEEEEeeCCCC---CC-----------CCCCeeEEEeccCCh--HHHHHHHHHHHhCCCeEEeCChhhHH
Q 027466 48 KLEGLARNKGILFVAIDQNRP---LS-----------DQGPFDIVLHKLTGK--EWRQILEEYRQTHPEVTVLDPPYAIQ 111 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~p---l~-----------~QgpfDvILHKltd~--~~~~~lq~y~~~hP~v~VIDP~~~i~ 111 (223)
.+..-++++|++...+|.+.. +. ...++|+++=.+... ..-....+..+.. .+.++.++.+++
T Consensus 17 ~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~le~~-g~~v~n~~~a~~ 95 (300)
T PRK10446 17 RLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEML-GSYPLNESVAIA 95 (300)
T ss_pred HHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCCCchhhHHHHHHHHHHHC-CCceecCHHHHH
Confidence 466777899999999998752 21 123689998755432 2222223333433 367788888999
Q ss_pred hhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEecccccc--
Q 027466 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-- 189 (223)
Q Consensus 112 ~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~-- 189 (223)
...|+..+.+.+.+. .+.+|+...+. +..++.+.+. .-..||+|+||....| |..+.++.+.+.+.
T Consensus 96 ~~~dK~~~~~~l~~~-------gip~P~t~~~~-~~~~~~~~~~-~~~~~P~VvKP~~g~~---g~GV~~v~~~~~~~~~ 163 (300)
T PRK10446 96 RARDKLRSMQLLARQ-------GIDLPVTGIAH-SPDDTSDLID-MVGGAPLVVKLVEGTQ---GIGVVLAETRQAAESV 163 (300)
T ss_pred hhhcHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHHH-HhCCCCEEEEECCCCC---cccEEEEcCHHHHHHH
Confidence 999999999998863 47889988774 2222222222 2236999999998654 44555666665443
Q ss_pred -----CCCCceeEEEeeecC-cEEEEEEEecceEEEE
Q 027466 190 -----KLEPPLVLQEFVNHG-MQMAFGYLADIHYIIF 220 (223)
Q Consensus 190 -----~l~~P~VlQeFINH~-gvlfKVYViG~~~~v~ 220 (223)
....++++||||++. |.=+-|+|+|+++.-.
T Consensus 164 ~~~~~~~~~~~lvQe~I~~~~g~d~rv~vig~~~~~~ 200 (300)
T PRK10446 164 IDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAA 200 (300)
T ss_pred HHHHHhcCCCEEEEeeeccCCCceEEEEEECCEEEEE
Confidence 345699999999874 8888999999886543
No 7
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.56 E-value=9.3e-07 Score=78.75 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=106.9
Q ss_pred HHhHHHhcCcEEEEeeCCCC-------CCC--------CCCeeEEEeccCChH-HHHHHHHHHHhCCCeEEeCC-hhhHH
Q 027466 49 LEGLARNKGILFVAIDQNRP-------LSD--------QGPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLDP-PYAIQ 111 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~p-------l~~--------QgpfDvILHKltd~~-~~~~lq~y~~~hP~v~VIDP-~~~i~ 111 (223)
+....++.|++.+.+|.+.. +.+ ...+|+|+-=+.+.. -...++...+.+ .+.++-+ +.++.
T Consensus 23 i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~~~~~~~le~~-gip~~g~~~~~~~ 101 (315)
T TIGR01205 23 VLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGEDGTIQGLLELM-GIPYTGSGVLASA 101 (315)
T ss_pred HHHHHhhcCCEEEEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCCcHHHHHHHHc-CCCccCCCHHHHH
Confidence 55666788999999998862 111 147899998443220 012344455544 5777665 78999
Q ss_pred hhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchH----HHHhcCCccceEEeeecccCCCCCeeEEEEecccc
Q 027466 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPD----VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (223)
Q Consensus 112 ~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~----~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~g 187 (223)
...|+..+.+.+++. .+.+|+++.++.+..+..+ .+ ...+.||+|+||....|+ ..+.++.|.+.
T Consensus 102 ~~~dK~~~~~~l~~~-------gip~p~~~~~~~~~~~~~~~~~~~~-~~~~~~P~vvKP~~~~~s---~Gv~~v~~~~e 170 (315)
T TIGR01205 102 LSMDKLLTKLLWKAL-------GLPTPDYIVLTQNRASADELECEQV-AEPLGFPVIVKPAREGSS---VGVSKVKSEEE 170 (315)
T ss_pred HHHCHHHHHHHHHHC-------CCCCCCEEEEecccccchhhhHHHH-HHhcCCCEEEEeCCCCCc---cCEEEECCHHH
Confidence 999999999998863 5889999988622222111 11 246899999999887654 45789999877
Q ss_pred ccC-------CCCceeEEEeeecCcEEEEEEEecc
Q 027466 188 LKK-------LEPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 188 L~~-------l~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
|.. ...++++||||+ |.=|-|.|+|+
T Consensus 171 l~~~~~~~~~~~~~~lvEe~i~--G~e~~v~vi~~ 203 (315)
T TIGR01205 171 LQAALDEAFEYDEEVLVEQFIK--GRELEVSILGN 203 (315)
T ss_pred HHHHHHHHHhcCCcEEEEcCCC--CEEEEEEEECC
Confidence 743 356899999996 78899999993
No 8
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.29 E-value=1.7e-06 Score=72.89 Aligned_cols=95 Identities=22% Similarity=0.308 Sum_probs=52.4
Q ss_pred CHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC----
Q 027466 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK---- 190 (223)
Q Consensus 115 dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~---- 190 (223)
|+..+.+.|.+. .+.+|+..+..+ ..+..+.+++.+ .+|+|.||+..+ ....+.++-+.+.+..
T Consensus 3 dK~~~~~~l~~~-------gipvP~t~~~~~-~~~~~~~~~~~~-~~p~ViKp~~g~---~G~gV~~i~~~~~~~~~l~~ 70 (190)
T PF08443_consen 3 DKLLTLQLLAKA-------GIPVPETRVTNS-PEEAKEFIEELG-GFPVVIKPLRGS---SGRGVFLINSPDELESLLDA 70 (190)
T ss_dssp BHHHHHHHHHHT-------T-----EEEESS-HHHHHHHHHHH---SSEEEE-SB----------EEEESHCHHHHHHH-
T ss_pred CHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHHHHhc-CCCEEEeeCCCC---CCCEEEEecCHHHHHHHHHH
Confidence 566666666642 478899988853 334445555555 999999997743 3567788888766643
Q ss_pred ---CCCceeEEEeeecCc-EEEEEEEecceEEEEE
Q 027466 191 ---LEPPLVLQEFVNHGM-QMAFGYLADIHYIIFI 221 (223)
Q Consensus 191 ---l~~P~VlQeFINH~g-vlfKVYViG~~~~v~~ 221 (223)
...|.++|+||.+.+ .=+.|||||++++-.+
T Consensus 71 ~~~~~~~~~~Q~fI~~~~g~d~Rv~Vig~~vv~a~ 105 (190)
T PF08443_consen 71 FKRLENPILVQEFIPKDGGRDLRVYVIGGKVVGAY 105 (190)
T ss_dssp ----TTT-EEEE----SS---EEEEEETTEEEEEE
T ss_pred HHhccCcceEeccccCCCCcEEEEEEECCEEEEEE
Confidence 467999999999985 8999999999987543
No 9
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=2.3e-05 Score=72.10 Aligned_cols=136 Identities=20% Similarity=0.267 Sum_probs=97.8
Q ss_pred CCeeEEEeccCChHHH-HHHHHHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCch
Q 027466 73 GPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (223)
Q Consensus 73 gpfDvILHKltd~~~~-~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~ 151 (223)
..+|+++=.-+...-. -.+-+..+ .=.+.||+|+.+++...|..-.++.+.. ..+.+|+-+++.+. .+..
T Consensus 77 ~~~D~i~~R~~~~~~~~~~~~~~~E-~~G~~viN~p~~i~~~~nK~~~~~~l~~-------~~ipvP~T~i~~~~-~~~~ 147 (318)
T COG0189 77 DELDVIIMRKDPPFDFATRFLRLAE-RKGVPVINDPQSIRRCRNKLYTTQLLAK-------AGIPVPPTLITRDP-DEAA 147 (318)
T ss_pred ccCCEEEEecCCchhhHHHHHHHHH-HcCCeEECCHHHHHhhhhHHHHHHHHHh-------cCCCCCCEEEEcCH-HHHH
Confidence 3788888776654322 11111222 2379999999999999999988888774 35788999988532 3434
Q ss_pred HHHHhcCCccceEEeeecccCCCCCeeEEEEeccc-cccCC--------CCceeEEEeeecCcEEEEEEEecceEEEEE
Q 027466 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY-SLKKL--------EPPLVLQEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 152 ~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~-gL~~l--------~~P~VlQeFINH~gvlfKVYViG~~~~v~~ 221 (223)
... +..+.||+|.||+-.+|... ...+-+.+ .|.++ .-++++||||+=...=.|.|++||...+.+
T Consensus 148 ~~~-~~~~g~pvVlKp~~Gs~G~g---V~~v~~~d~~l~~~~e~~~~~~~~~~ivQeyi~~~~~~~rrivv~~~~~~~~ 222 (318)
T COG0189 148 EFV-AEHLGFPVVLKPLDGSGGRG---VFLVEDADPELLSLLETLTQEGRKLIIVQEYIPKAKRDDRRVLVGGGEVVAI 222 (318)
T ss_pred HHH-HHhcCCCEEEeeCCCCCccc---eEEecCCChhHHHHHHHHhccccceEehhhhcCcccCCcEEEEEeCCEEeEE
Confidence 444 34588999999999877743 45566666 55332 137999999999998999999999888765
No 10
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.11 E-value=3.6e-05 Score=68.72 Aligned_cols=146 Identities=13% Similarity=0.158 Sum_probs=103.5
Q ss_pred HHhHHHhcCcEEEEeeCCCCCC----CCCCeeEEEeccCChH-HHHHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHH
Q 027466 49 LEGLARNKGILFVAIDQNRPLS----DQGPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQC 122 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~pl~----~QgpfDvILHKltd~~-~~~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~ 122 (223)
+....++.|.+.+.+|.+..+. +...+|+++--+.+.. -...++.+.+.+ .+.++ .++.++....|+..+.+.
T Consensus 24 i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~~~g~~ge~~~~~~~le~~-gip~~G~~~~a~~i~~DK~~~k~~ 102 (299)
T PRK14571 24 VKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNVLHGTFGEDGTLQAILDFL-GIRYTGSDAFSSMICFDKLLTYRF 102 (299)
T ss_pred HHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEeCCCCCCCccHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHH
Confidence 4445577899999998776532 2357899988775531 013456666665 67777 448899999999988777
Q ss_pred HHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCce
Q 027466 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPL 195 (223)
Q Consensus 123 l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~ 195 (223)
++. + +.+|+++.+... .....+.||+|+||....|| -.+.++.|.+.|.. -..++
T Consensus 103 l~~-------~-ip~p~~~~~~~~-------~~~~~l~~P~vvKP~~g~~s---~Gv~~v~~~~el~~~~~~~~~~~~~v 164 (299)
T PRK14571 103 LKG-------T-VEIPDFVEIKEF-------MKTSPLGYPCVVKPRREGSS---IGVFICESDEEFQHALKEDLPRYGSV 164 (299)
T ss_pred Hhc-------C-CCCCCEEEEech-------hhhhhcCCCEEEecCCCCCc---CCEEEECCHHHHHHHHHHHHhhCCcE
Confidence 652 2 778999988521 11235899999999876655 45568999877742 13489
Q ss_pred eEEEeeecCcEEEEEEEecc
Q 027466 196 VLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 196 VlQeFINH~gvlfKVYViG~ 215 (223)
++||||. |.=|=|-|+|+
T Consensus 165 lVEeyI~--G~E~sv~vl~~ 182 (299)
T PRK14571 165 IVQEYIP--GREMTVSILET 182 (299)
T ss_pred EEEcccc--ceEEEEEEEcC
Confidence 9999996 78888888875
No 11
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.11 E-value=2e-05 Score=70.44 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=70.6
Q ss_pred eEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEE
Q 027466 101 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (223)
Q Consensus 101 v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Ma 180 (223)
.++..++++++.+.|+..|.+.+.+. .+.+|+++.+++ .+++.+.+...++.||+|+||....| |..+.
T Consensus 97 ~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~~~~~~~P~viKP~~g~~---s~gv~ 165 (326)
T PRK12767 97 KVLVSSKEVIEICNDKWLTYEFLKEN-------GIPTPKSYLPES-LEDFKAALAKGELQFPLFVKPRDGSA---SIGVF 165 (326)
T ss_pred EEEeCCHHHHHHHhcHHHHHHHHHHc-------CCCCCCEEcccC-HHHHHhhhhcccCCCCEEEEeCCCCC---ccCeE
Confidence 34567889999999999999998864 367899887752 22322222235689999999966444 56788
Q ss_pred EEeccccccCC---CCceeEEEeeecCcEEEEEEEe
Q 027466 181 LAYDQYSLKKL---EPPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 181 ivf~~~gL~~l---~~P~VlQeFINH~gvlfKVYVi 213 (223)
++.+.+.|.+. ..++++|||| .|.-|-+-++
T Consensus 166 ~v~~~~el~~~~~~~~~~lvqeyi--~G~e~~v~~~ 199 (326)
T PRK12767 166 KVNDKEELEFLLEYVPNLIIQEFI--EGQEYTVDVL 199 (326)
T ss_pred EeCCHHHHHHHHHhCCCeEEEecc--CCceEEEEEE
Confidence 88888776432 2499999999 4555555444
No 12
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.06 E-value=5.3e-05 Score=70.15 Aligned_cols=151 Identities=20% Similarity=0.182 Sum_probs=94.8
Q ss_pred HHhHHHhcCcEEEEeeCCCCCCCCCCeeEEE-eccCChH------------------HHHHHHHHHHhCCCeEEeCChhh
Q 027466 49 LEGLARNKGILFVAIDQNRPLSDQGPFDIVL-HKLTGKE------------------WRQILEEYRQTHPEVTVLDPPYA 109 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~pl~~QgpfDvIL-HKltd~~------------------~~~~lq~y~~~hP~v~VIDP~~~ 109 (223)
+..-|++.|+.++.+|.+.+-....-.|-.+ --.+|.+ +....-++.+++ ..+.-++++
T Consensus 17 l~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e~i~~~~l~~l~~~--~~~~p~~~~ 94 (372)
T PRK06019 17 LALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFENVPAEALDALAAR--VPVPPGPDA 94 (372)
T ss_pred HHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcCCCCHHHHHHHhcC--CeeCcCHHH
Confidence 4556678899999999864322111112111 1222321 111222344444 457789999
Q ss_pred HHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEecccccc
Q 027466 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK 189 (223)
Q Consensus 110 i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~ 189 (223)
++...||..+-+.++++ .+.+|++..+++ .+++.+.. ..+.||+|+||.. |..+++-..++.+++.|.
T Consensus 95 ~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~s-~~~l~~~~--~~~g~P~vlKp~~--~g~~g~Gv~~v~~~~el~ 162 (372)
T PRK06019 95 LAIAQDRLTEKQFLDKL-------GIPVAPFAVVDS-AEDLEAAL--ADLGLPAVLKTRR--GGYDGKGQWVIRSAEDLE 162 (372)
T ss_pred HHHhcCHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCcEEEEeCC--CCcCCCCeEEECCHHHHH
Confidence 99999999999998864 578899998853 22322222 2478999999975 223567778899987774
Q ss_pred C----C-CCceeEEEeeecCcEEEEEEEec
Q 027466 190 K----L-EPPLVLQEFVNHGMQMAFGYLAD 214 (223)
Q Consensus 190 ~----l-~~P~VlQeFINH~gvlfKVYViG 214 (223)
+ + ..++++||||+-+ .=|=|-+++
T Consensus 163 ~a~~~~~~~~~ivEe~I~~~-~E~sv~~~~ 191 (372)
T PRK06019 163 AAWALLGSVPCILEEFVPFE-REVSVIVAR 191 (372)
T ss_pred HHHHhcCCCCEEEEecCCCC-eEEEEEEEE
Confidence 3 2 3589999999843 334444443
No 13
>PRK07206 hypothetical protein; Provisional
Probab=98.05 E-value=7.4e-05 Score=69.31 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=68.8
Q ss_pred eEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCC-ccceEEeeecccCCCCCeeE
Q 027466 101 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVADGSAKSHEL 179 (223)
Q Consensus 101 v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl-~fP~I~KplvA~Gs~~SH~M 179 (223)
++.-.+++.+....|+..|.+.+++. .+.+|++..++ +.+++.+.+++-|. .+|+|+||....|| ..+
T Consensus 94 l~~~~~~~~~~~~~dK~~~r~~l~~~-------gi~~p~~~~~~-~~~e~~~~~~~~g~~~~P~VvKP~~g~gs---~gv 162 (416)
T PRK07206 94 PQYSNDPALSSARRNKAEMINALAEA-------GLPAARQINTA-DWEEAEAWLRENGLIDRPVVIKPLESAGS---DGV 162 (416)
T ss_pred CCcCCChhhHHHhhCHHHHHHHHHHc-------CCCcccEEecC-CHHHHHHHHHhcCCCCCCEEEeCCCCCCC---CCE
Confidence 33356677888889999999998864 57789998885 22333444444332 44999999887665 467
Q ss_pred EEEeccccccCC--------------CCceeEEEeeecCcEEEEEEEe
Q 027466 180 SLAYDQYSLKKL--------------EPPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 180 aivf~~~gL~~l--------------~~P~VlQeFINH~gvlfKVYVi 213 (223)
.++.+.+.|.+. ..++++||||. |.-|=|-++
T Consensus 163 ~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~--G~E~sv~~~ 208 (416)
T PRK07206 163 FICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLI--GTEYVVNFV 208 (416)
T ss_pred EEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEccc--cEEEEEEEE
Confidence 788888766321 25899999996 555555444
No 14
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.02 E-value=0.00011 Score=67.03 Aligned_cols=143 Identities=21% Similarity=0.266 Sum_probs=90.7
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCCCCCCee-EEEeccCChHH-------------------HHHHHHHHHhCCCeEEeCCh
Q 027466 48 KLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEW-------------------RQILEEYRQTHPEVTVLDPP 107 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~~QgpfD-vILHKltd~~~-------------------~~~lq~y~~~hP~v~VIDP~ 107 (223)
-+...|++.|+.++.+|.+..-....-.| .++...+|.+. ...+..+.+.+ +.+.-++
T Consensus 13 ~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e~e~i~~~~l~~l~~~g--~~~~p~~ 90 (352)
T TIGR01161 13 MLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFEFEHVDVEALEKLEARG--VKLFPSP 90 (352)
T ss_pred HHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeCcCcCCHHHHHHHHhCC--CeECCCH
Confidence 35567788899999999864311111112 12233344321 12233333332 4566888
Q ss_pred hhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEecccc
Q 027466 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS 187 (223)
Q Consensus 108 ~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~g 187 (223)
++++...||..+-+.+++. .+.+|+++.+++ .+++.+.+ ..+.||+|+||.... ..+....++.+++.
T Consensus 91 ~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvKp~~~g--~~g~Gv~~v~~~~e 158 (352)
T TIGR01161 91 DALAIIQDRLTQKQFLQKL-------GLPVPPFLVIKD-EEELDAAL--QELGFPVVLKARTGG--YDGRGQYRIRNEAD 158 (352)
T ss_pred HHHHHhcCHHHHHHHHHHc-------CCCCCCccEeCC-HHHHHHHH--HHcCCCEEEEeCCCC--CCCCCEEEECCHHH
Confidence 9999999999999988763 578899999863 22222222 247899999998642 23556778888877
Q ss_pred ccC----C-CCceeEEEeeecC
Q 027466 188 LKK----L-EPPLVLQEFVNHG 204 (223)
Q Consensus 188 L~~----l-~~P~VlQeFINH~ 204 (223)
|.. + ..++++||||+.+
T Consensus 159 l~~a~~~~~~~~~lvEe~I~~~ 180 (352)
T TIGR01161 159 LPQAAKELGDRECIVEEFVPFE 180 (352)
T ss_pred HHHHHHhcCCCcEEEEecCCCC
Confidence 643 2 3489999999854
No 15
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=97.99 E-value=0.00012 Score=67.04 Aligned_cols=99 Identities=14% Similarity=0.228 Sum_probs=67.6
Q ss_pred eEEeCChhhHHhhcCHHHHHHHH-HhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeE
Q 027466 101 VTVLDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (223)
Q Consensus 101 v~VIDP~~~i~~L~dR~~~~~~l-~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~M 179 (223)
+.+..++++++...||..+.+.+ ++. .+.+|++..+++ .+++.+.. ..+.||+|+||....| |-..
T Consensus 86 ~~~~~~~~~~~~~~dK~~~~~~~~~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~VvKP~~g~~---s~gv 152 (380)
T TIGR01142 86 YFVVPNARATKLTMNREGIRRLAAEEL-------GLPTSRYMFADS-LDELREAV--EKIGYPCVVKPVMSSS---GKGQ 152 (380)
T ss_pred CeeCCCHHHHHHhhCHHHHHHHHHHHC-------CCCCCCceEeCC-HHHHHHHH--HHcCCCEEEEECCCcC---CCCe
Confidence 44556788888889998877764 432 578999998863 22322222 3578999999985444 5567
Q ss_pred EEEeccccccCC-----------CCceeEEEeeecCcEEEEEEEe
Q 027466 180 SLAYDQYSLKKL-----------EPPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 180 aivf~~~gL~~l-----------~~P~VlQeFINH~gvlfKVYVi 213 (223)
.++.+++.|... ..++++||||.. +.=+-|.++
T Consensus 153 ~~v~~~~el~~~~~~~~~~~~~~~~~~ivEe~i~~-~~E~sv~~~ 196 (380)
T TIGR01142 153 SVVRGPEDIEKAWEYAQEGARGGAGRVIVEEFIDF-DYEITLLTV 196 (380)
T ss_pred EEECCHHHHHHHHHHHHhhccCCCCCEEEEEecCC-CEEEEEEEE
Confidence 899998877321 358999999984 444444444
No 16
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=97.97 E-value=0.0001 Score=67.83 Aligned_cols=149 Identities=14% Similarity=0.201 Sum_probs=92.0
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCCC-----------------------CCCeeEEEeccCChHHHHHHHHHHHhCCCeEEe
Q 027466 48 KLEGLARNKGILFVAIDQNRPLSD-----------------------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL 104 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~~-----------------------QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI 104 (223)
.+...+++.|+.++.+|.+..-.. ...+|+|+--..+.. ...+.+.. +. .+.+.
T Consensus 26 ~~~~a~~~~G~~v~~~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~vi~~~e~~~-~~~~~~l~-~~-g~~~~ 102 (395)
T PRK09288 26 EVAIEAQRLGVEVIAVDRYANAPAMQVAHRSHVIDMLDGDALRAVIEREKPDYIVPEIEAIA-TDALVELE-KE-GFNVV 102 (395)
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchHHhhhheEECCCCCHHHHHHHHHHhCCCEEEEeeCcCC-HHHHHHHH-hc-CCeeC
Confidence 455567788999998887642110 013444443222211 12233332 33 45556
Q ss_pred CChhhHHhhcCHHHHHHHHH-hccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEe
Q 027466 105 DPPYAIQHLHNRQSMLQCVA-DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY 183 (223)
Q Consensus 105 DP~~~i~~L~dR~~~~~~l~-~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf 183 (223)
.++++++...||..+-+.+. ++ .+.+|++..+++ .+++.+.. ..+.||+|+||....| |.-..++.
T Consensus 103 ~~~~a~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~s-~~~l~~~~--~~~g~P~VvKP~~g~~---s~Gv~~v~ 169 (395)
T PRK09288 103 PTARATRLTMNREGIRRLAAEEL-------GLPTSPYRFADS-LEELRAAV--EEIGYPCVVKPVMSSS---GKGQSVVR 169 (395)
T ss_pred CCHHHHHHHhCHHHHHHHHHHhC-------CCCCCCceEECC-HHHHHHHH--HhcCCCEEEEeCCCcC---CCCeEEEC
Confidence 77899999999998888763 32 578899999863 22322222 3578999999975443 55677999
Q ss_pred ccccccCC-----------CCceeEEEeeecCcEEEEEEEe
Q 027466 184 DQYSLKKL-----------EPPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 184 ~~~gL~~l-----------~~P~VlQeFINH~gvlfKVYVi 213 (223)
+++.|.+. ..++++||||.. +.=+-|.++
T Consensus 170 ~~~el~~~~~~~~~~~~~~~~~~lvEefi~~-~~E~sv~~~ 209 (395)
T PRK09288 170 SPEDIEKAWEYAQEGGRGGAGRVIVEEFIDF-DYEITLLTV 209 (395)
T ss_pred CHHHHHHHHHHHHhhccccCCCEEEEEecCC-CEEEEEEEE
Confidence 98777331 268999999984 334444444
No 17
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=97.97 E-value=9.9e-05 Score=74.97 Aligned_cols=145 Identities=12% Similarity=0.032 Sum_probs=95.3
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCC---CCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHHHHHH
Q 027466 48 KLEGLARNKGILFVAIDQNRPLS---DQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVA 124 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~---~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~ 124 (223)
.++..|.++|+.+..+|.+..+- ..+..+.+..- ...-.|+..+.....|+..+.+.|.
T Consensus 436 ~li~aA~~rGi~v~~ld~~~~~l~l~~g~~~~~v~~~------------------~~t~~~s~~s~~~~~DK~~tk~lL~ 497 (752)
T PRK02471 436 ILLFDAIQRGIQVEILDEQDQFLKLQKGDHVEYVKNG------------------NMTSKDNYISPLIMENKVVTKKILA 497 (752)
T ss_pred HHHHHHHHCCCeEEEEcCCcceehhccCCCeeEEEec------------------cccCCCHHHHHHHhhCHHHHHHHHH
Confidence 46678899999999999865532 22344443321 2345677777777789998888887
Q ss_pred hccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEecccccc-------CCCCceeE
Q 027466 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-------KLEPPLVL 197 (223)
Q Consensus 125 ~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~-------~l~~P~Vl 197 (223)
+ ..|.+|++.++.+ .++......+ -..||+|+||....++..-....-+.+.+.+. +....+++
T Consensus 498 ~-------~GIpvP~~~~~~~-~e~a~~~~~~-~~g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a~~~~~~vlV 568 (752)
T PRK02471 498 E-------AGFPVPAGDEFTS-LEEALADYSL-FADKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIAFREDSSVLV 568 (752)
T ss_pred H-------CCcCCCCEEEEcC-HHHHHHHHHH-hcCCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHHHhcCCcEEE
Confidence 5 2588999998852 2222222221 13799999999876554332211123444442 22468999
Q ss_pred EEeeecCcEEEEEEEecceEEEEE
Q 027466 198 QEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 198 QeFINH~gvlfKVYViG~~~~v~~ 221 (223)
||||. |.=|-|+|+|+++.-++
T Consensus 569 EEfI~--G~E~Rv~Viggkvvaa~ 590 (752)
T PRK02471 569 EEFIV--GTEYRFFVLDGKVEAVL 590 (752)
T ss_pred Eeccc--CCEEEEEEECCEEEEEE
Confidence 99995 89999999999876654
No 18
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=97.94 E-value=2.7e-05 Score=62.96 Aligned_cols=91 Identities=19% Similarity=0.332 Sum_probs=53.7
Q ss_pred hcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccCC-
Q 027466 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL- 191 (223)
Q Consensus 113 L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l- 191 (223)
+.|+..|.+.+.+. .+.+|+++.+++ .+++.+.... +.||+|+||....|+ -.+.++.+++.|.+.
T Consensus 2 ~~dK~~~~~~~~~~-------gv~~P~~~~~~~-~~~~~~~~~~--~~~p~vvKp~~g~gs---~gv~~~~~~~~l~~~~ 68 (184)
T PF13535_consen 2 CNDKYRMRELLKKA-------GVPVPKTRIVDS-EEELRAFAED--LGFPFVVKPVDGSGS---RGVFIVHSPEELEAAL 68 (184)
T ss_dssp TCCHHHHHHHHHHH-------TS----EEEECS-HHHHHHHHHH--SSSSEEEEESS-STT---TT-EEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHHHH--cCCCEEEEcCccccC---CCEEEeCCHHHHHHHH
Confidence 56788888887754 467899999863 2333334443 349999999998775 667788899888544
Q ss_pred ----------CCceeEEEeeecCcEEEEEEEecce
Q 027466 192 ----------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 192 ----------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
..++++||||+-...=+-+++.++.
T Consensus 69 ~~~~~~~~~~~~~~ivqe~i~g~e~~~~~~~~~G~ 103 (184)
T PF13535_consen 69 AEIREDSPLGNGPVIVQEYIPGDEYSVDGVVDDGE 103 (184)
T ss_dssp HHHHHHHS-HSSSEEEEE---SEEEEEEEEEETTE
T ss_pred HHHHHhcccCCccEEEEEeeeeeeEEEEEEEEcce
Confidence 3589999999932333333444333
No 19
>PRK06849 hypothetical protein; Provisional
Probab=97.84 E-value=0.00035 Score=64.69 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=64.9
Q ss_pred EeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEE
Q 027466 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (223)
Q Consensus 103 VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maiv 182 (223)
..-+++.++.++|+..+.+.++++ .+.+|+++.+++ .+++ ..+......||+|+||...+|+. .+.++
T Consensus 104 ~~~~~~~~~~~~DK~~~~~~~~~~-------GipvP~t~~v~~-~~~l-~~~~~~~~~~P~vlKP~~~~~~~---~v~~~ 171 (389)
T PRK06849 104 LHFDFELLLLLHNKWEFAEQARSL-------GLSVPKTYLITD-PEAI-RNFMFKTPHTPYVLKPIYSRFVR---RVDLL 171 (389)
T ss_pred EcCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCEEEeCC-HHHH-HHHhhcCCCCcEEEEeCcccCCC---eEEEe
Confidence 457889999999999999998865 478899999853 2222 22222334799999999877664 45557
Q ss_pred eccccccCC----CCceeEEEeee
Q 027466 183 YDQYSLKKL----EPPLVLQEFVN 202 (223)
Q Consensus 183 f~~~gL~~l----~~P~VlQeFIN 202 (223)
.+++.+..+ ..|+++||||.
T Consensus 172 ~~~~~l~~~~~~~~~~~ivQe~I~ 195 (389)
T PRK06849 172 PKEAALKELPISKDNPWVMQEFIQ 195 (389)
T ss_pred cCHHHhcccccCCCCCeEEEEEec
Confidence 777766655 24899999997
No 20
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=97.84 E-value=0.00036 Score=62.73 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=102.1
Q ss_pred HHhHHHhcCcEEEEeeCCC-CCCC---CCCeeEEEeccCChH-HHHHHHHHHHhCCCeEEeC-ChhhHHhhcCHHHHHHH
Q 027466 49 LEGLARNKGILFVAIDQNR-PLSD---QGPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQC 122 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~-pl~~---QgpfDvILHKltd~~-~~~~lq~y~~~hP~v~VID-P~~~i~~L~dR~~~~~~ 122 (223)
..+.-++.|.+.+.+|.+. .+-. ..++|+++-=+.+.. -...++...+.+ ++..+- .+.+....+|+..+-+.
T Consensus 27 v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~~lhG~~ge~~~i~~~le~~-gip~~Gs~~~a~~l~~DK~~~k~~ 105 (296)
T PRK14569 27 VLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALHGEDGENGRVSALLEML-EIKHTSSSMKSSVITMDKMISKEI 105 (296)
T ss_pred HHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEEeCCCCCCCChHHHHHHHHc-CCCeeCCCHHHHHHHHCHHHHHHH
Confidence 3344467899999999864 2111 246776665443321 013355555555 566554 56899999999999988
Q ss_pred HHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC----C--CCcee
Q 027466 123 VADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----L--EPPLV 196 (223)
Q Consensus 123 l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~----l--~~P~V 196 (223)
+++. .|.+|++..++.. .. ....+.||+|+||....| |.-+.+|.+++.|.. + ..+++
T Consensus 106 l~~~-------gIptp~~~~~~~~----~~--~~~~~~~P~vVKP~~ggs---s~Gv~~v~~~~eL~~a~~~~~~~~~~l 169 (296)
T PRK14569 106 LMHH-------RMPTPMAKFLTDK----LV--AEDEISFPVAVKPSSGGS---SIATFKVKSIQELKHAYEEASKYGEVM 169 (296)
T ss_pred HHHC-------CCCCCCeEEEchh----hh--hHhhcCCCEEEEeCCCCC---CcCeEEcCCHHHHHHHHHHHHhcCCEE
Confidence 8763 5788998887532 11 124689999999976433 567889999888743 1 24899
Q ss_pred EEEeeecCcEEEEEEEecceE
Q 027466 197 LQEFVNHGMQMAFGYLADIHY 217 (223)
Q Consensus 197 lQeFINH~gvlfKVYViG~~~ 217 (223)
+||||. |.=|=|.|+|+..
T Consensus 170 vEefI~--G~E~tv~vl~~~~ 188 (296)
T PRK14569 170 IEQWVT--GKEITVAIVNDEV 188 (296)
T ss_pred EEcccc--cEEEEEEEECCcC
Confidence 999994 6889999998753
No 21
>PRK12458 glutathione synthetase; Provisional
Probab=97.84 E-value=0.00013 Score=67.35 Aligned_cols=130 Identities=14% Similarity=0.155 Sum_probs=81.7
Q ss_pred CeeEEEeccCC---hHHHHHHHH------HHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEc
Q 027466 74 PFDIVLHKLTG---KEWRQILEE------YRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE 144 (223)
Q Consensus 74 pfDvILHKltd---~~~~~~lq~------y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~ 144 (223)
.||+|+..-.. .....+++. ...+...+.++.++++++...|...+++..+ +.+|+.++..
T Consensus 79 ~~d~V~~R~~~~~~~~~~~~l~~~~~~~~~~~e~~g~~viN~p~~i~~~~dK~~~~~l~~----------~~vP~T~v~~ 148 (338)
T PRK12458 79 GFDVIFLRANPPLDPLARNWADSVGIAFGRLAARDGVLVVNDPDGLRIANNKLYFQSFPE----------EVRPTTHISR 148 (338)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHhchhHHHHHHhCCCeEecCHHHHHhccCHHHHHhhcc----------CCCCCEEEeC
Confidence 57999997642 223333331 1222346899999999999999887644311 3579887664
Q ss_pred cCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEecccc--ccCC------CCceeEEEeeecC-cEEEEEEEecc
Q 027466 145 RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS--LKKL------EPPLVLQEFVNHG-MQMAFGYLADI 215 (223)
Q Consensus 145 ~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~g--L~~l------~~P~VlQeFINH~-gvlfKVYViG~ 215 (223)
+.+++.+.+++.| ..|+|+||+...|+..-. .+.+.+. +..+ ..|+++|+||... +-=.-|+|+|+
T Consensus 149 -~~~~~~~~~~~~~-~~pvVvKPl~G~gG~gV~---~v~~~~~~~~~~ile~~~~~~~~ivQeyI~~~~~gDiRv~vv~g 223 (338)
T PRK12458 149 -NKEYIREFLEESP-GDKMILKPLQGSGGQGVF---LIEKSAQSNLNQILEFYSGDGYVIAQEYLPGAEEGDVRILLLNG 223 (338)
T ss_pred -CHHHHHHHHHHcC-CCeEEEEECCCCCccCeE---EEecCChhhHHHHHHHHhhCCCEEEEEcccCCCCCCEEEEEECC
Confidence 3333333444332 236999999987765443 4554432 3211 4599999999852 33477889999
Q ss_pred eEE
Q 027466 216 HYI 218 (223)
Q Consensus 216 ~~~ 218 (223)
++.
T Consensus 224 ~~v 226 (338)
T PRK12458 224 EPL 226 (338)
T ss_pred EEE
Confidence 877
No 22
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.83 E-value=0.00037 Score=73.08 Aligned_cols=87 Identities=15% Similarity=0.358 Sum_probs=64.9
Q ss_pred CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEec
Q 027466 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (223)
Q Consensus 105 DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~ 184 (223)
-++++++...||..+.+.++++ .+.+|+++.+++ .++..+.. ..+.||+|+||.-.. .|..|.++.|
T Consensus 659 ~s~~ai~~~~DK~~~~~~L~~~-------GIp~P~~~~~~s-~ee~~~~~--~~igyPvvVKP~~~~---Gg~Gv~iv~~ 725 (1066)
T PRK05294 659 TSPDAIDLAEDRERFSKLLEKL-------GIPQPPNGTATS-VEEALEVA--EEIGYPVLVRPSYVL---GGRAMEIVYD 725 (1066)
T ss_pred CCHHHHHHhCCHHHHHHHHHHc-------CcCCCCeEEECC-HHHHHHHH--HhcCCCeEEEeCCCC---CCCcEEEECC
Confidence 5678999999999999988764 477899998853 22323333 347899999995543 4577899999
Q ss_pred cccccC---------CCCceeEEEeeecC
Q 027466 185 QYSLKK---------LEPPLVLQEFVNHG 204 (223)
Q Consensus 185 ~~gL~~---------l~~P~VlQeFINH~ 204 (223)
++.|.. -..|+++||||.-.
T Consensus 726 ~eeL~~~~~~a~~~s~~~~vlIEefI~G~ 754 (1066)
T PRK05294 726 EEELERYMREAVKVSPDHPVLIDKFLEGA 754 (1066)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEecCCCC
Confidence 988743 24689999999744
No 23
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.81 E-value=0.00035 Score=63.75 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=88.6
Q ss_pred CeeEEEeccCChH-HHHHHHHHHHhCCCeEEeCC-hhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC--C
Q 027466 74 PFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--S 149 (223)
Q Consensus 74 pfDvILHKltd~~-~~~~lq~y~~~hP~v~VIDP-~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~--~ 149 (223)
.+|+++-=+.+.. -...+|.+.+.+ .+..+=+ ..+....+|+..+.+.+++. .+.+|+++.+..... .
T Consensus 81 ~~D~vf~~lhG~~gedg~iq~lle~~-gipy~G~~~~a~~l~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 152 (333)
T PRK01966 81 EVDVVFPVLHGPPGEDGTIQGLLELL-GIPYVGCGVLASALSMDKILTKRLLAAA-------GIPVAPYVVLTRGDWEEA 152 (333)
T ss_pred cCCEEEEccCCCCCCCcHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEeccccchh
Confidence 5788876554321 012355665554 5666654 67888999999999998863 588899998864322 1
Q ss_pred chHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecc
Q 027466 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 150 ~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
..+.+ ...+.||+|+||....|| --+.++.+.+.|.+ ...++++|+||. |.=|-|-|+|+
T Consensus 153 ~~~~~-~~~~~~P~vVKP~~~gsS---~Gv~~v~~~~el~~a~~~~~~~~~~vlvEefI~--G~E~~v~vl~~ 219 (333)
T PRK01966 153 SLAEI-EAKLGLPVFVKPANLGSS---VGISKVKNEEELAAALDLAFEYDRKVLVEQGIK--GREIECAVLGN 219 (333)
T ss_pred hHHHH-HHhcCCCEEEEeCCCCCc---cCEEEECCHHHHHHHHHHHHhcCCcEEEEcCcC--CEEEEEEEECC
Confidence 11222 235899999999776554 45778999887743 357899999998 68888999985
No 24
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.79 E-value=0.00035 Score=68.49 Aligned_cols=146 Identities=15% Similarity=0.207 Sum_probs=97.3
Q ss_pred cch--hhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHHH
Q 027466 44 FLQ--PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQ 121 (223)
Q Consensus 44 f~~--~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~ 121 (223)
++. ..+++.|+++|+.++.+|-+.. .|.+-- -.+..++ + . ....+.+..+++...|+..+.+
T Consensus 240 l~~y~~~Ii~~a~~~Gi~~~~~~se~~-----~~~L~~--g~~~~~~---~---~---s~~~~~s~~ai~~~~DK~~tk~ 303 (547)
T TIGR03103 240 LNPYARIIVDEARRRGIEVEVLDAEGG-----LFRLSL--GGRSIRC---R---E---SLSELTSAVAMSLCDDKRLTRR 303 (547)
T ss_pred cCHHHHHHHHHHHHcCCcEEEECCCCC-----EEEecC--CceEEEE---E---e---ccCCCCCHHHHHHhcCHHHHHH
Confidence 554 5588899999999999774422 221100 0000011 0 1 1124448889999999999999
Q ss_pred HHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEE-EeccccccC-------CCC
Q 027466 122 CVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKK-------LEP 193 (223)
Q Consensus 122 ~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Mai-vf~~~gL~~-------l~~ 193 (223)
.+++. .+.+|+...+. +.++..+.+++.| |+|+||... + .+..|.+ +.+++.|.+ ...
T Consensus 304 lL~~a-------GIpVP~~~~~~-~~~~~~~~~~~~G---~vVVKP~~G--~-~G~Gv~v~v~~~~eL~~a~~~a~~~~~ 369 (547)
T TIGR03103 304 LVSEA-------GLQVPEQQLAG-NGEAVEAFLAEHG---AVVVKPVRG--E-QGKGISVDVRTPDDLEAAIAKARQFCD 369 (547)
T ss_pred HHHHc-------CcCCCCEEEEC-CHHHHHHHHHHhC---CEEEEECCC--C-CCcCeEEecCCHHHHHHHHHHHHhcCC
Confidence 98863 47899999885 3233334444444 799999664 3 5566776 788777643 346
Q ss_pred ceeEEEeeecCcEEEEEEEecceEEEEE
Q 027466 194 PLVLQEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 194 P~VlQeFINH~gvlfKVYViG~~~~v~~ 221 (223)
++++|+||. |.=|.++|||+++..++
T Consensus 370 ~vlvEe~i~--G~d~Rv~Vigg~vvaa~ 395 (547)
T TIGR03103 370 RVLLERYVP--GEDLRLVVIDFEVVAAA 395 (547)
T ss_pred cEEEEEecc--CCeEEEEEECCEEEEEE
Confidence 899999995 67889999999988765
No 25
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.75 E-value=0.0005 Score=63.18 Aligned_cols=127 Identities=16% Similarity=0.110 Sum_probs=85.0
Q ss_pred CeeE---EEeccCChHHHHHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC--
Q 027466 74 PFDI---VLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-- 147 (223)
Q Consensus 74 pfDv---ILHKltd~~~~~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~-- 147 (223)
.+|+ .+|.-.+++ ..+|.+.+.. ++.++ -+..++...+|+..+.+.+++. .+.+|+++.+++..
T Consensus 88 ~~d~~f~~~hg~~gEd--g~iq~~le~~-gipy~Gs~~~a~~i~~DK~~~k~~l~~~-------GI~~p~~~~~~~~~~~ 157 (347)
T PRK14572 88 DADIAFLGLHGGAGED--GRIQGFLDTL-GIPYTGSGVLASALAMDKTRANQIFLQS-------GQKVAPFFELEKLKYL 157 (347)
T ss_pred CcCEEEEecCCCCCCC--cHHHHHHHHc-CcCcCCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEEEccccc
Confidence 3566 445444442 1244444443 45555 5688999999999999998763 58899999885321
Q ss_pred CCchHHHH-hcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecc
Q 027466 148 SSIPDVVL-KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 148 ~~~~~~l~-~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
....+.+. ...+.||+|+||....| |....++.+++.|.+ ...++++||||. |.=|=|-|+|+
T Consensus 158 ~~~~~~~~~~~~l~~PvvVKP~~ggs---S~GV~~v~~~~el~~a~~~~~~~~~~vlVEefI~--G~E~sv~vi~~ 228 (347)
T PRK14572 158 NSPRKTLLKLESLGFPQFLKPVEGGS---SVSTYKITNAEQLMTLLALIFESDSKVMSQSFLS--GTEVSCGVLER 228 (347)
T ss_pred cChHHHHHHHHhcCCCEEEecCCCCC---CCCEEEECCHHHHHHHHHHHHhcCCCEEEEcCcc--cEEEEEEEEeC
Confidence 11111111 23589999999976433 466778999877743 246899999995 78899999973
No 26
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=97.72 E-value=0.00088 Score=70.25 Aligned_cols=100 Identities=13% Similarity=0.330 Sum_probs=71.4
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
.+.++ -++++++.+.||..+.+.+.++ .+.+|++..+++ .++..+.. ..+.||+|+||.-..|+ ..
T Consensus 653 Gi~i~G~s~~~i~~~~DK~~f~~lL~~~-------GIp~P~~~~v~s-~ee~~~~~--~~igyPvIVKP~~~~Gg---~g 719 (1050)
T TIGR01369 653 GVPILGTSPESIDRAEDREKFSELLDEL-------GIPQPKWKTATS-VEEAVEFA--SEIGYPVLVRPSYVLGG---RA 719 (1050)
T ss_pred CCcEECCCHHHHHHHCCHHHHHHHHHHC-------CcCCCCeEEECC-HHHHHHHH--HhcCCCEEEEECCCCCC---CC
Confidence 34444 6789999999999999988864 477899998853 22322222 35789999999776554 67
Q ss_pred EEEEeccccccC---------CCCceeEEEeeecCcEEEEEEEe
Q 027466 179 LSLAYDQYSLKK---------LEPPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 179 Maivf~~~gL~~---------l~~P~VlQeFINH~gvlfKVYVi 213 (223)
|.++.|++.|.. -..|+++||||.. |.=|=|-++
T Consensus 720 v~iv~~~eeL~~~l~~a~~~s~~~~vlVeefI~~-G~E~~Vd~l 762 (1050)
T TIGR01369 720 MEIVYNEEELRRYLEEAVEVSPEHPVLIDKYLED-AVEVDVDAV 762 (1050)
T ss_pred eEEECCHHHHHHHHHHHHHhCCCCCEEEeecCCC-CeEEEEEEE
Confidence 999999988743 2358999999975 333444333
No 27
>PRK05246 glutathione synthetase; Provisional
Probab=97.69 E-value=0.00063 Score=61.74 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=93.5
Q ss_pred hHHhHHHhcCcEEEEeeCCCCC---------------C--CC-------------CCeeEEEeccCCh-----HHHHHHH
Q 027466 48 KLEGLARNKGILFVAIDQNRPL---------------S--DQ-------------GPFDIVLHKLTGK-----EWRQILE 92 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl---------------~--~Q-------------gpfDvILHKltd~-----~~~~~lq 92 (223)
.+...|+++|.+....+++.=. . .+ ..+|+|+-+-... .+...+-
T Consensus 23 ~l~~aa~~~G~~v~~~~~~dl~~~~~~i~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l 102 (316)
T PRK05246 23 AMMLEAQRRGHELFYYEPDDLSLRGGEVVARARPLTVRDDKGDWYELGEEQRLPLADFDVILMRKDPPFDMEYIYATYLL 102 (316)
T ss_pred HHHHHHHHcCCEEEEEehhhcEEECCEEEEEEEEEEeccCCccceeccccccCccccCCEEEEcCCCCCChHHHHHHHHH
Confidence 4667788888877766654110 0 00 1379998663221 1222333
Q ss_pred HHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccC
Q 027466 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (223)
Q Consensus 93 ~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~G 172 (223)
+..+.. .+.+++++++++...|...+++... .+|+....+ +.+++.+.+++.| |+|+||+..+|
T Consensus 103 ~~le~~-g~~v~N~p~~l~~~~dK~~~~~l~~-----------~vP~T~~~~-~~~~~~~~~~~~~---~vVlKP~~G~~ 166 (316)
T PRK05246 103 ERAERP-GTLVVNKPQSLRDANEKLFTLWFPE-----------LMPPTLVTR-DKAEIRAFRAEHG---DIILKPLDGMG 166 (316)
T ss_pred HHHHhC-CCeEECCHHHHHhCccHHHHHhhhc-----------cCCCEEEeC-CHHHHHHHHHHCC---CEEEEECCCCC
Confidence 344433 7999999999999988877665421 378876653 3334445555554 99999999877
Q ss_pred CCCCeeEEEEeccccc-------cCC-CCceeEEEeeec--CcEEEEEEEecceEE
Q 027466 173 SAKSHELSLAYDQYSL-------KKL-EPPLVLQEFVNH--GMQMAFGYLADIHYI 218 (223)
Q Consensus 173 s~~SH~Maivf~~~gL-------~~l-~~P~VlQeFINH--~gvlfKVYViG~~~~ 218 (223)
....+. +-.+...+ ... ..|+++|+||.- ++= ..|+|+|+++.
T Consensus 167 G~gV~~--i~~~~~~~~~~~~~l~~~~~~~~lvQ~~I~~~~~~D-~Rv~vv~g~vv 219 (316)
T PRK05246 167 GAGIFR--VKADDPNLGSILETLTEHGREPVMAQRYLPEIKEGD-KRILLVDGEPV 219 (316)
T ss_pred ccceEE--EeCCCccHHHHHHHHHHccCCeEEEEeccccCCCCC-EEEEEECCEEh
Confidence 654433 22223322 223 469999999964 232 48999988754
No 28
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=97.65 E-value=0.00077 Score=61.32 Aligned_cols=152 Identities=20% Similarity=0.241 Sum_probs=92.7
Q ss_pred hHHhHHHhcCcEEEEeeCCCC-------------------------CCCC-----CCeeEEEeccCC---hHH--HHHHH
Q 027466 48 KLEGLARNKGILFVAIDQNRP-------------------------LSDQ-----GPFDIVLHKLTG---KEW--RQILE 92 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~p-------------------------l~~Q-----gpfDvILHKltd---~~~--~~~lq 92 (223)
.+..-|+++|.+..-++++.= +.+. ..||+|+-+-.. ..+ ...+-
T Consensus 22 ~L~~aa~~rG~~v~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~v~~R~~~~~~~~~~~~~~~l 101 (312)
T TIGR01380 22 ALMEEAQKRGHELFFYEPGDLSVVNGEVFARARPVRVGPNKQDWYTLGEKVRLSLGELDAVLMRKDPPFDMEYIYATYLL 101 (312)
T ss_pred HHHHHHHHcCCEEEEEehhheEEECCEEEEEEEEEEeccCCcceeecCcccccccccCCEEEEeCCCCCChhhhHHHHHH
Confidence 366677888887777666511 0100 267888876421 122 22344
Q ss_pred HHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccC
Q 027466 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (223)
Q Consensus 93 ~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~G 172 (223)
++.+.. .+.|+.|+++++...|+..+++... .+|+.++.+ +.+++.+.+++.| |+|+||+..+|
T Consensus 102 ~~le~~-g~~viN~p~~i~~~~dK~~~~~~~~-----------~vP~T~v~~-~~~~~~~~~~~~g---~vVvKPl~G~~ 165 (312)
T TIGR01380 102 ELADPT-GTLVINSPQGLRDANEKLFTLQFPK-----------VIPPTLVTR-DKAEIRAFLAEHG---DIVLKPLDGMG 165 (312)
T ss_pred HHHHhC-CCeEEeCHHHHHhhhhHHHHhhCcC-----------CCCCEEEeC-CHHHHHHHHHHcC---CEEEEECCCCC
Confidence 444443 5789999999998888776555421 378876543 4444445555555 89999999876
Q ss_pred CCCCeeEEEEec-cccc-------cCC-CCceeEEEeeec-CcEEEEEEEecceEE
Q 027466 173 SAKSHELSLAYD-QYSL-------KKL-EPPLVLQEFVNH-GMQMAFGYLADIHYI 218 (223)
Q Consensus 173 s~~SH~Maivf~-~~gL-------~~l-~~P~VlQeFINH-~gvlfKVYViG~~~~ 218 (223)
.... ..+-+ ...+ ..+ ..|+++|+||+. .+-=+-|+|+|+.++
T Consensus 166 G~gv---~~v~~~~~~~~~~~~~~~~~~~~~~~vQ~yI~~~~~~D~Rv~vv~g~vv 218 (312)
T TIGR01380 166 GEGI---FRLDPGDPNFNSILETMTQRGREPVMAQRYLPEIKEGDKRILLIDGEPI 218 (312)
T ss_pred CceE---EEEcCCCccHHHHHHHHHhccCCcEEEEeccccccCCCEEEEEECCeEE
Confidence 6433 33332 2222 222 359999999984 122368899999864
No 29
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=97.63 E-value=0.001 Score=62.23 Aligned_cols=109 Identities=12% Similarity=0.027 Sum_probs=73.3
Q ss_pred HHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeee
Q 027466 90 ILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (223)
Q Consensus 90 ~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kpl 168 (223)
.+.+..+++ .+.++ -++++++...|+..+-+.+++. .+.+|++..+++ .++..+.++ .+.||+|+||.
T Consensus 77 ~~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~VvKP~ 145 (420)
T PRK00885 77 GIVDAFRAA-GLPIFGPTKAAAQLEGSKAFAKDFMARY-------GIPTAAYETFTD-AEEALAYLD--EKGAPIVVKAD 145 (420)
T ss_pred HHHHHHHHC-CCcEECcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCeEEeCC-HHHHHHHHH--HcCCCEEEEeC
Confidence 333333433 45555 5677889999999999998864 477899998853 222223332 46899999997
Q ss_pred cccCCCCCeeEEEEeccccccC-------------CCCceeEEEeeecCcEEEEEEEec
Q 027466 169 VADGSAKSHELSLAYDQYSLKK-------------LEPPLVLQEFVNHGMQMAFGYLAD 214 (223)
Q Consensus 169 vA~Gs~~SH~Maivf~~~gL~~-------------l~~P~VlQeFINH~gvlfKVYViG 214 (223)
...| |.-+.++.+++.+.+ ...++++|||+. |.=|=|.++.
T Consensus 146 ~~~g---s~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~--G~E~sv~~~~ 199 (420)
T PRK00885 146 GLAA---GKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLD--GEEASFFAFV 199 (420)
T ss_pred CCCC---CCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccC--CcEEEEEEEE
Confidence 5544 456889999876532 235899999997 4566666653
No 30
>PRK08462 biotin carboxylase; Validated
Probab=97.60 E-value=0.00056 Score=64.47 Aligned_cols=142 Identities=13% Similarity=0.162 Sum_probs=92.5
Q ss_pred hccc-hhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeE-EeCChhhHHhhcCHHHH
Q 027466 42 KSFL-QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVT-VLDPPYAIQHLHNRQSM 119 (223)
Q Consensus 42 ~~f~-~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~-VIDP~~~i~~L~dR~~~ 119 (223)
+++. .+.++.+|++.+++.+--=.. . ++.. ..+.+..+++ .+. +--++++++.+.|+..+
T Consensus 60 ~~y~~~~~l~~~~~~~~~D~i~pg~g-~-------------lse~---~~~a~~~e~~-Gi~~~g~~~~~~~~~~dK~~~ 121 (445)
T PRK08462 60 ESYLNIPAIISAAEIFEADAIFPGYG-F-------------LSEN---QNFVEICSHH-NIKFIGPSVEVMALMSDKSKA 121 (445)
T ss_pred cccCCHHHHHHHHHHcCCCEEEECCC-c-------------cccC---HHHHHHHHHC-CCeEECcCHHHHHHhCCHHHH
Confidence 3553 567899999998886653321 1 1221 2244444454 343 45788999999999999
Q ss_pred HHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccCC------
Q 027466 120 LQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL------ 191 (223)
Q Consensus 120 ~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l------ 191 (223)
.+.+++. .+.+|+.. .++ +.++..+.. ..+.||+|+||....| |..|.++.|++.|.+.
T Consensus 122 r~~l~~~-------gIp~pp~~~~~~~-~~~~~~~~~--~~~g~PvvvKP~~g~g---s~Gv~~v~~~~eL~~~~~~~~~ 188 (445)
T PRK08462 122 KEVMKRA-------GVPVIPGSDGALK-SYEEAKKIA--KEIGYPVILKAAAGGG---GRGMRVVEDESDLENLYLAAES 188 (445)
T ss_pred HHHHHHC-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEeCCCCC---CCCeEEECCHHHHHHHHHHHHH
Confidence 9998864 46677653 232 222222222 3478999999977554 5778899998887531
Q ss_pred -------CCceeEEEeeecCcEEEEEEEecc
Q 027466 192 -------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 192 -------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
..++++||||.. +.-|-+.++||
T Consensus 189 ~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~~ 218 (445)
T PRK08462 189 EALSAFGDGTMYMEKFINN-PRHIEVQILGD 218 (445)
T ss_pred HHHhccCCCcEEEeccCCC-CeEEEEEEEEC
Confidence 247999999975 33467777755
No 31
>PRK05586 biotin carboxylase; Validated
Probab=97.52 E-value=0.00041 Score=65.65 Aligned_cols=101 Identities=11% Similarity=0.145 Sum_probs=72.1
Q ss_pred EEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeE
Q 027466 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (223)
Q Consensus 102 ~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~M 179 (223)
.+--++++++.+.||..+-+.+++. .+.+|++. .++ +.+++.+.. ..+.||+|+||... + .|..+
T Consensus 102 ~~g~s~~~~~~~~DK~~~k~~l~~~-------GIpvp~~~~~~~~-~~~e~~~~~--~~igyPvvvKP~~g--g-gg~Gv 168 (447)
T PRK05586 102 FIGPDSETIELMGNKSNAREIMIKA-------GVPVVPGSEGEIE-NEEEALEIA--KEIGYPVMVKASAG--G-GGRGI 168 (447)
T ss_pred EECcCHHHHHhhCCHHHHHHHHHHC-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEECCC--C-CCCee
Confidence 3557789999999999999988763 47788874 343 222222222 35789999999664 3 56888
Q ss_pred EEEeccccccCC-------------CCceeEEEeeecCcEEEEEEEecce
Q 027466 180 SLAYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 180 aivf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
.++.+++.|.+. ..++++||||... .-+-|.|++|.
T Consensus 169 ~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~-~ei~v~v~~d~ 217 (447)
T PRK05586 169 RIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP-KHIEFQILGDN 217 (447)
T ss_pred EEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC-eEEEEEEEECC
Confidence 899999887432 3589999999854 44777777763
No 32
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.48 E-value=0.00036 Score=73.22 Aligned_cols=96 Identities=15% Similarity=0.241 Sum_probs=70.9
Q ss_pred CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEec
Q 027466 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (223)
Q Consensus 105 DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~ 184 (223)
-++++++.+.||..+.+.+.++ .+.+|++..+.+ .++..+.. ..+.||+|+||....| +..|.++.+
T Consensus 660 ~s~e~i~~~~DK~~f~~ll~~~-------GIp~P~~~~~~s-~ee~~~~~--~~igyPvVVKP~~~~G---g~gv~iv~~ 726 (1068)
T PRK12815 660 TSPDTIDRLEDRDRFYQLLDEL-------GLPHVPGLTATD-EEEAFAFA--KRIGYPVLIRPSYVIG---GQGMAVVYD 726 (1068)
T ss_pred CcHHHHHHHcCHHHHHHHHHHc-------CcCCCCeEEeCC-HHHHHHHH--HhcCCCEEEEeCCCCC---CCCEEEECC
Confidence 5688999999999999998864 477899998853 22222222 3578999999976544 577999999
Q ss_pred cccccC-------CCCceeEEEeeecCcEEEEEEEecc
Q 027466 185 QYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 185 ~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
++.|.+ -..|+++|+|| .|.=|=|.++.|
T Consensus 727 ~eeL~~~l~~~~s~~~~vlIeefI--~G~E~~Vd~i~d 762 (1068)
T PRK12815 727 EPALEAYLAENASQLYPILIDQFI--DGKEYEVDAISD 762 (1068)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEee--cCceEEEEEEEc
Confidence 988743 25699999999 345666666644
No 33
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.46 E-value=0.0021 Score=66.17 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=66.5
Q ss_pred CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEec
Q 027466 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (223)
Q Consensus 105 DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~ 184 (223)
.++++++.+.|+..|-+.+++. .+.+|++..+++. ++..+.. ..+.||+|+||.-..|| ....++.|
T Consensus 97 ~~~ea~~~~~dK~~~r~~L~~~-------GIp~P~~~~v~~~-~e~~~~~--~~~~~PvVVKP~~g~gS---~GV~~v~~ 163 (887)
T PRK02186 97 ANTEAIRTCRDKKRLARTLRDH-------GIDVPRTHALALR-AVALDAL--DGLTYPVVVKPRMGSGS---VGVRLCAS 163 (887)
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEeCCH-HHHHHHH--HhCCCCEEEEeCCCCCC---CCeEEECC
Confidence 3578888999999998888753 4778999988632 2322222 35789999999887665 45678888
Q ss_pred cccccC--------CCCceeEEEeeecCcEEEEEEEe
Q 027466 185 QYSLKK--------LEPPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 185 ~~gL~~--------l~~P~VlQeFINH~gvlfKVYVi 213 (223)
.+.|.. -..++++||||. |.-|=|-++
T Consensus 164 ~~el~~a~~~~~~~~~~~~lvEEfI~--G~E~sVe~i 198 (887)
T PRK02186 164 VAEAAAHCAALRRAGTRAALVQAYVE--GDEYSVETL 198 (887)
T ss_pred HHHHHHHHHHHHhcCCCcEEEeeccc--CCcEEEEEE
Confidence 876632 156899999997 345555444
No 34
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=97.44 E-value=0.0024 Score=59.52 Aligned_cols=133 Identities=15% Similarity=0.128 Sum_probs=88.5
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHh
Q 027466 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~ 125 (223)
..+.++|++.++++|-+..+.|+ ...+.+..+++ .+.++ -++++++...|+..+-+.+++
T Consensus 17 ~~l~~~~~~~~id~vi~g~E~~l------------------~~~~~d~l~~~-Gi~~~g~s~~a~~l~~dK~~~k~~l~~ 77 (379)
T PRK13790 17 QAILDFAKQQNVDWVVIGPEQPL------------------IDGLADILRAN-GFKVFGPNKQAAQIEGSKLFAKKIMEK 77 (379)
T ss_pred HHHHHHHHHhCCCEEEECCcHHH------------------HHHHHHHHHhC-CCcEECCCHHHHHHhCCHHHHHHHHHH
Confidence 45778888888888876665443 23444444443 35445 566888999999999888876
Q ss_pred ccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC---------CCCcee
Q 027466 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK---------LEPPLV 196 (223)
Q Consensus 126 l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~---------l~~P~V 196 (223)
. .|.+|++..+++ .++..+.+. .+.||+|+||.-. +.|.-+.++.+.+.+.+ ...+++
T Consensus 78 ~-------gIptp~~~~~~~-~~ea~~~~~--~~g~PvVvKp~~~---~~gkGV~iv~~~~el~~a~~~~~~~~~~~~vl 144 (379)
T PRK13790 78 Y-------NIPTADYKEVER-KKDALTYIE--NCELPVVVKKDGL---AAGKGVIIADTIEAARSAIEIMYGDEEEGTVV 144 (379)
T ss_pred C-------CCCCCCEEEECC-HHHHHHHHH--hcCCCEEEEeCCC---CCCCCEEEECCHHHHHHHHHHHHhcCCCCeEE
Confidence 3 577899988753 222233332 4789999999743 35677889999876632 134899
Q ss_pred EEEeeecCcEEEEEEEe
Q 027466 197 LQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 197 lQeFINH~gvlfKVYVi 213 (223)
+|||+. |.=|=|.++
T Consensus 145 vEe~i~--G~E~sv~~~ 159 (379)
T PRK13790 145 FETFLE--GEEFSLMTF 159 (379)
T ss_pred EEEccc--CceEEEEEE
Confidence 999995 344444443
No 35
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.40 E-value=0.00056 Score=69.19 Aligned_cols=142 Identities=12% Similarity=0.199 Sum_probs=94.5
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhcc
Q 027466 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMN 127 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~ 127 (223)
.+++.|.++|+.+..+|-. . ++|=-++.. .+.++..... -++..+++...|+..+.+.+++.
T Consensus 164 ~I~~~A~~~gi~~~~l~~~-~---------~v~lgyG~~-~~~i~~~~~~------~~s~~a~~i~~DK~~tk~lL~~~- 225 (727)
T PRK14016 164 AIVDAAEARGIPYIRLGDG-S---------LVQLGYGKY-QRRIQAAETD------QTSAIAVDIACDKELTKRLLAAA- 225 (727)
T ss_pred HHHHHHHHcCCCEEEeCCC-C---------eEecCCcHH-HHHHHHhcCC------CCcHHHHHHhCCHHHHHHHHHHC-
Confidence 4667888888888776521 1 233223331 1223222221 56778899999999999988763
Q ss_pred ccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEE-EeccccccC-------CCCceeEEE
Q 027466 128 LSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AYDQYSLKK-------LEPPLVLQE 199 (223)
Q Consensus 128 ~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Mai-vf~~~gL~~-------l~~P~VlQe 199 (223)
.+.+|+...+. +.++..+.. ..+.||+|+||... + .+..|.+ +.+++.|.+ ...++++|+
T Consensus 226 ------GIPvP~~~~v~-s~~~a~~~a--~~iG~PvVVKP~~G--~-~G~GV~~~v~~~~el~~a~~~a~~~~~~viVEe 293 (727)
T PRK14016 226 ------GVPVPEGRVVT-SAEDAWEAA--EEIGYPVVVKPLDG--N-HGRGVTVNITTREEIEAAYAVASKESSDVIVER 293 (727)
T ss_pred ------CcCCCCeeEeC-CHHHHHHHH--HHcCCCEEEEECCC--C-CCCceEEecCCHHHHHHHHHHHHHhCCeEEEEE
Confidence 58889998774 222333333 24789999999864 3 4566777 778776632 246899999
Q ss_pred eeecCcEEEEEEEecceEEEEE
Q 027466 200 FVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 200 FINH~gvlfKVYViG~~~~v~~ 221 (223)
||. |.=|.|||+|+++..+.
T Consensus 294 ~I~--G~d~Rv~Vvgg~vvaa~ 313 (727)
T PRK14016 294 YIP--GKDHRLLVVGGKLVAAA 313 (727)
T ss_pred ecC--CceEEEEEECCEEEEEE
Confidence 997 66789999999876543
No 36
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.37 E-value=0.0002 Score=61.64 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=53.3
Q ss_pred cccCCceEEEccCCCCchH-HHHhcCCccceEEeeecccCCCCCeeEEEEecccccc-------CCCCceeEEEeeecCc
Q 027466 134 KVDVPRQLVIERDASSIPD-VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK-------KLEPPLVLQEFVNHGM 205 (223)
Q Consensus 134 ~i~~P~~v~i~~~~~~~~~-~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~-------~l~~P~VlQeFINH~g 205 (223)
.|.||++++++........ .-....+.||+++||... || |--+.+|.+.+.|. +...+++++||| +|
T Consensus 6 gI~tp~~~~~~~~~~~~~~~~~~~~~l~~P~~VKP~~~-Gs--S~Gi~~v~~~~el~~ai~~~~~~~~~vlVEefI--~G 80 (203)
T PF07478_consen 6 GIPTPPYVVVKKNEDDSDSIEKILEDLGFPLFVKPASE-GS--SIGISKVHNEEELEEAIEKAFKYDDDVLVEEFI--SG 80 (203)
T ss_dssp T-BB-SEEEEETTSHHHHHHHHHHHHHSSSEEEEESST-ST--TTTEEEESSHHHHHHHHHHHTTTHSEEEEEE----SS
T ss_pred CCCCCCEEEEecccccchhHHHHHhhcCCCEEEEECCC-Cc--cEEEEEcCCHHHHHHHHHHHhhhcceEEEEeee--cc
Confidence 6899999999743211111 112356899999999854 33 45567899998874 345699999999 99
Q ss_pred EEEEEEEecce
Q 027466 206 QMAFGYLADIH 216 (223)
Q Consensus 206 vlfKVYViG~~ 216 (223)
.=|-|-|+|+.
T Consensus 81 ~E~tv~vl~~~ 91 (203)
T PF07478_consen 81 REFTVGVLGNG 91 (203)
T ss_dssp EEEEEEEEESS
T ss_pred cceEEEEEecC
Confidence 99999999954
No 37
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=97.34 E-value=0.003 Score=58.93 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=72.5
Q ss_pred HHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccc-eEEeee
Q 027466 91 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPL 168 (223)
Q Consensus 91 lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP-~I~Kpl 168 (223)
+.+..+++ .+.++ -++++++...||..+.+.+.+. .+.+|++..+++ .++..+.+ ..+.|| +|+||.
T Consensus 80 ~~~~l~~~-gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~-~~~~~~~~--~~~g~P~~VvKp~ 148 (423)
T TIGR00877 80 LVDALEEA-GIPVFGPTKEAAQLEGSKAFAKDFMKRY-------GIPTAEYEVFTD-PEEALSYI--QEKGAPAIVVKAD 148 (423)
T ss_pred HHHHHHHC-CCeEECCCHHHHHHHCCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHH--HhcCCCeEEEEEC
Confidence 33444444 34444 6778999999999999998864 467899998853 22333333 257899 999996
Q ss_pred cccCCCCCeeEEEEeccccccC----C--------CCceeEEEeeecCcEEEEEEEe
Q 027466 169 VADGSAKSHELSLAYDQYSLKK----L--------EPPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 169 vA~Gs~~SH~Maivf~~~gL~~----l--------~~P~VlQeFINH~gvlfKVYVi 213 (223)
...|+ ..+.++.+.+.+.+ + ..++++|||++ |.=|=|-++
T Consensus 149 ~~~gg---~Gv~~v~~~~el~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~ 200 (423)
T TIGR00877 149 GLAAG---KGVIVAKTNEEAIKAVEEILEQKFGDAGERVVIEEFLD--GEEVSLLAF 200 (423)
T ss_pred CCCCC---CCEEEECCHHHHHHHHHHHHHHhcCCCCCeEEEEECcc--CceEEEEEE
Confidence 65444 46788888766532 1 24799999998 345555555
No 38
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.29 E-value=0.0012 Score=67.89 Aligned_cols=102 Identities=13% Similarity=0.204 Sum_probs=74.9
Q ss_pred CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEE-Ee
Q 027466 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL-AY 183 (223)
Q Consensus 105 DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Mai-vf 183 (223)
|+..++....|+..+.+.|++. .+.+|+...+.+ .++..+... .+.||+|+||....+ +.-+.+ +.
T Consensus 203 ~s~ia~~ia~DK~~tk~lL~~~-------GIpvP~~~~~~s-~~ea~~~~~--~ig~PvVVKP~~g~~---G~GV~l~v~ 269 (864)
T TIGR02068 203 TSAIAVEIACDKDLTKEILSDA-------GVPVPEGTVVQS-AEDAWEAAQ--DLGYPVVIKPYDGNH---GRGVTINIL 269 (864)
T ss_pred CcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEECC-HHHHHHHHH--HcCCCEEEEECCCCC---ccCEEEEeC
Confidence 6677899999999999988863 578999988852 223233333 357999999996433 455666 77
Q ss_pred ccccccC-------CCCceeEEEeeecCcEEEEEEEecceEEEEE
Q 027466 184 DQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 184 ~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~~~v~~ 221 (223)
+++.|.+ ...++++|+||. |.=|-|+|+|+++..+.
T Consensus 270 s~~el~~a~~~a~~~~~~vlVEefI~--G~e~rvlVv~~~vvaa~ 312 (864)
T TIGR02068 270 TRDEIESAYEAAVEESSGVIVERFIT--GRDHRLLVVGGKVVAVA 312 (864)
T ss_pred CHHHHHHHHHHHHhhCCcEEEEEecc--CCEEEEEEECCEEEEEE
Confidence 7766632 245899999996 78899999999877654
No 39
>PLN02735 carbamoyl-phosphate synthase
Probab=97.26 E-value=0.0061 Score=64.50 Aligned_cols=153 Identities=13% Similarity=0.229 Sum_probs=99.9
Q ss_pred HHhHHHhcCcEEEEeeCCCCCCC--C----------------------CCeeEEEeccCCh---HHHHHHHHHHHhCC--
Q 027466 49 LEGLARNKGILFVAIDQNRPLSD--Q----------------------GPFDIVLHKLTGK---EWRQILEEYRQTHP-- 99 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~pl~~--Q----------------------gpfDvILHKltd~---~~~~~lq~y~~~hP-- 99 (223)
....+++.|+..+-+|-+-.... . ...|.|+=-.-++ .+...+.++..+++
T Consensus 600 ~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~~L~e~~~f 679 (1102)
T PLN02735 600 ASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQKYLDKNPPP 679 (1102)
T ss_pred HHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEEEECCCchHHHHHHHHHHHHHHhccch
Confidence 44566999999999988744322 1 1123332222111 13345566655554
Q ss_pred ------Ce-EEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccC
Q 027466 100 ------EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (223)
Q Consensus 100 ------~v-~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~G 172 (223)
.+ ++--++++++...||..+-+.+.++ .+.+|++..+++ .++..+.. ..+.||+|+||.-..
T Consensus 680 a~~~~~gi~i~G~s~e~i~i~~DK~~~k~~l~~~-------GIp~p~~~~v~s-~eea~~~a--~~iGyPvvVKP~~g~- 748 (1102)
T PLN02735 680 SASGNGNVKIWGTSPDSIDAAEDRERFNAILNEL-------KIEQPKGGIARS-EADALAIA--KRIGYPVVVRPSYVL- 748 (1102)
T ss_pred hhhhcCCeEEECCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEeCC-HHHHHHHH--HhcCCCeEEEeCCCC-
Confidence 33 4567789999999999999988864 478899987753 22222222 358999999996643
Q ss_pred CCCCeeEEEEeccccccCC---------CCceeEEEeeecCcEEEEEEEecc
Q 027466 173 SAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 173 s~~SH~Maivf~~~gL~~l---------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
.+..|.+|.+++.|.+. ..|+++|+||.+ |.=+=|-+++|
T Consensus 749 --gG~G~~iV~~~eeL~~al~~a~~~~~~~~vlVEefI~~-g~Ei~V~vl~D 797 (1102)
T PLN02735 749 --GGRAMEIVYSDDKLKTYLETAVEVDPERPVLVDKYLSD-ATEIDVDALAD 797 (1102)
T ss_pred --CCCcEEEECCHHHHHHHHHHHHHhcCCCCEEEEEecCC-cEEEEEEEEEC
Confidence 34589999999887431 358999999964 56666666665
No 40
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=97.26 E-value=0.0082 Score=59.41 Aligned_cols=158 Identities=16% Similarity=0.121 Sum_probs=98.4
Q ss_pred CCcEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCCCCCCCCee-EEEeccCChHH------------------
Q 027466 27 SKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEW------------------ 87 (223)
Q Consensus 27 ~~~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfD-vILHKltd~~~------------------ 87 (223)
....+||....- .....+...|++.|+.++.+|.+.+-..-.-.| .++...+|.+.
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 345677777766 222335567788999999999975311100011 12223333210
Q ss_pred -HHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEe
Q 027466 88 -RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAK 166 (223)
Q Consensus 88 -~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~K 166 (223)
...++. .+++ .+.+.-++++++...||..+-+.+.+. .+.+|++..+++ .+++.+.. ..+.||+|+|
T Consensus 95 ~~~~l~~-le~~-gi~v~ps~~al~i~~DK~~~K~~l~~~-------GIptp~~~~v~~-~~el~~~~--~~ig~P~VvK 162 (577)
T PLN02948 95 DVDTLEA-LEKQ-GVDVQPKSSTIRIIQDKYAQKVHFSKH-------GIPLPEFMEIDD-LESAEKAG--DLFGYPLMLK 162 (577)
T ss_pred CHHHHHH-HHhc-CCccCCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeEEeCC-HHHHHHHH--HhcCCcEEEE
Confidence 122323 3333 233567789999999999998888753 578999998853 22222222 3578999999
Q ss_pred eecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeec
Q 027466 167 PLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNH 203 (223)
Q Consensus 167 plvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH 203 (223)
|.... .++.-+.++.+++.|.. ...++++++||+.
T Consensus 163 P~~gg--s~g~Gv~~v~~~~eL~~a~~~~~~~~~~vlvEefI~~ 204 (577)
T PLN02948 163 SRRLA--YDGRGNAVAKTEEDLSSAVAALGGFERGLYAEKWAPF 204 (577)
T ss_pred eCCCC--CCCCCeEEECCHHHHHHHHHHhhCCCCcEEEEecCCC
Confidence 97532 23456778999887632 2468999999986
No 41
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.20 E-value=0.0031 Score=66.27 Aligned_cols=91 Identities=15% Similarity=0.283 Sum_probs=65.5
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
.+.++ =++++++...||..+.+.++++ .+.+|++..+++ .++..+.. +.+.||+|+||.... .+..
T Consensus 112 Gv~~~g~~~~~i~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s-~~e~~~~~--~~ig~PvVVKP~~g~---gg~G 178 (1066)
T PRK05294 112 GVELIGAKLEAIDKAEDRELFKEAMKKI-------GLPVPRSGIAHS-MEEALEVA--EEIGYPVIIRPSFTL---GGTG 178 (1066)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHC-------CcCCCCeeeeCC-HHHHHHHH--HHcCCCeEEEcCCCC---CCCC
Confidence 34444 4678899999999999988764 478899998853 22323333 357899999997433 5567
Q ss_pred EEEEeccccccCC---------CCceeEEEeeec
Q 027466 179 LSLAYDQYSLKKL---------EPPLVLQEFVNH 203 (223)
Q Consensus 179 Maivf~~~gL~~l---------~~P~VlQeFINH 203 (223)
+.++.+++.|... ..++++||||+.
T Consensus 179 v~iv~~~eeL~~a~~~~~~~s~~~~vlvEe~I~G 212 (1066)
T PRK05294 179 GGIAYNEEELEEIVERGLDLSPVTEVLIEESLLG 212 (1066)
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCeEEEEEcccC
Confidence 7899998877432 248999999974
No 42
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.10 E-value=0.003 Score=58.98 Aligned_cols=127 Identities=14% Similarity=0.253 Sum_probs=88.8
Q ss_pred CeeEEEeccC---ChHHHHHHHHHHHhCCCeEEeCCh-hhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC--
Q 027466 74 PFDIVLHKLT---GKEWRQILEEYRQTHPEVTVLDPP-YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-- 147 (223)
Q Consensus 74 pfDvILHKlt---d~~~~~~lq~y~~~hP~v~VIDP~-~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~-- 147 (223)
++|+++-=+. +++ ..+|.+.+.. ++..+=+- .+....+|+..+-+.+++. .|.||++..++...
T Consensus 87 ~~D~vf~~lhG~~GEd--g~iqglle~~-giPy~Gs~~~asal~~DK~~tK~~l~~~-------GIpt~p~~~~~~~~~~ 156 (364)
T PRK14570 87 EIDVVFPIVHGRTGED--GAIQGFLKVM-DIPCVGAGILGSAISINKYFCKLLLKSF-------NIPLVPFIGFRKYDYF 156 (364)
T ss_pred CCCEEEEcCCCCCCCc--CHHHHHHHHc-CCCccCCCHHHHHHHHCHHHHHHHHHHc-------CCCCCCEEEEeccccc
Confidence 5788765554 332 3566666665 66666665 5889999999998888753 57888888885321
Q ss_pred ---CCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecce
Q 027466 148 ---SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 148 ---~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
.+..+.+ ...+.||+|+||.... + |.-+.++.+++.|.. .+.++++||||. |.=+-|-|+|+.
T Consensus 157 ~~~~~~~~~~-~~~lg~PviVKP~~~G-s--S~Gv~~v~~~~el~~al~~a~~~~~~vlVEefI~--GrEi~v~Vlg~~ 229 (364)
T PRK14570 157 LDKEGIKKDI-KEVLGYPVIVKPAVLG-S--SIGINVAYNENQIEKCIEEAFKYDLTVVIEKFIE--AREIECSVIGNE 229 (364)
T ss_pred cchHHHHHHH-HHhcCCCEEEEeCCCC-C--CCcEEEeCCHHHHHHHHHHHHhCCCCEEEECCcC--CEEEEEEEECCC
Confidence 1111222 2458999999995543 3 557889999877743 346899999998 778888888874
No 43
>PRK06524 biotin carboxylase-like protein; Validated
Probab=97.05 E-value=0.0032 Score=61.48 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=74.1
Q ss_pred HHHHHHhCCCeEE-eCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEcc-CCCCchHHHHhcCCccceEEeee
Q 027466 91 LEEYRQTHPEVTV-LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPL 168 (223)
Q Consensus 91 lq~y~~~hP~v~V-IDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~-~~~~~~~~l~~agl~fP~I~Kpl 168 (223)
+|...+.. .+.+ .=+..++...+||..+-+.++++ .+.+|++..+.. +.+++.+...++++.||+++||.
T Consensus 118 iQ~lLE~l-GIpy~gP~a~asai~mDK~~tK~l~~~a-------GIPtpp~~~~~~~~~eel~~~~~~~~IGyPvVVKP~ 189 (493)
T PRK06524 118 TEALARQA-GLEVMHPPAELRHRLDSKIVTTRLANEA-------GVPSVPHVLGRVDSYDELSALAHGAGLGDDLVVQTP 189 (493)
T ss_pred HHHHHHHC-CCeEECcCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccCCCHHHHHHHHHhccCCCcEEEEEC
Confidence 55555554 3444 55567778899999888887653 578888887632 22222223333469999999999
Q ss_pred cccCCCCCeeEEEEeccccccCC-----C-CceeEEEeeecCcEEEEEEEe
Q 027466 169 VADGSAKSHELSLAYDQYSLKKL-----E-PPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 169 vA~Gs~~SH~Maivf~~~gL~~l-----~-~P~VlQeFINH~gvlfKVYVi 213 (223)
.|+ .|+-+.+|.+++.|.+. + ..+++|+||++.-+-.=+++-
T Consensus 190 --~GG-SS~GV~~Vkn~eELe~a~~~~~~~~~viVEe~I~GrEitVev~vd 237 (493)
T PRK06524 190 --YGD-SGSTTFFVRGQRDWDKYAGGIVGQPEIKVMKRIRNVEVCIEACVT 237 (493)
T ss_pred --CCC-CCcCEEEeCCHHHHHHHHHHhcCCCCEEEEeccCcEEEEEEEEEe
Confidence 344 58999999999887532 2 468999999865443334443
No 44
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.04 E-value=0.0027 Score=58.23 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=83.8
Q ss_pred CeeEEEeccCChH-HHHHHHHHHHhCCCeEEeC-ChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCch
Q 027466 74 PFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (223)
Q Consensus 74 pfDvILHKltd~~-~~~~lq~y~~~hP~v~VID-P~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~ 151 (223)
.+|+++--+.+.. -.-.+|.+.+.. ++..+- ++.+....+|+..+.+.+++. .+.+|+++.++... +.
T Consensus 90 ~~d~vf~~lhG~~gedg~iq~lle~~-gipy~G~~~~asai~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~-~~- 159 (343)
T PRK14568 90 RLDVVFPVLHGKLGEDGAIQGLLELS-GIPYVGCDIQSSALCMDKSLAYIVAKNA-------GIATPAFWTVTADE-RP- 159 (343)
T ss_pred cCCEEEEcCCCCCCCchHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEECCc-hh-
Confidence 4677765544321 023456666554 566664 466788889999998888763 47889999886432 11
Q ss_pred HHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecc
Q 027466 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 152 ~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
....+.||+|+||....| |--..++.+.+.|.. ...++++||||. |.=|=|-|+|+
T Consensus 160 ---~~~~l~~P~iVKP~~~gs---S~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~sv~vl~~ 222 (343)
T PRK14568 160 ---DAATLTYPVFVKPARSGS---SFGVSKVNSADELDYAIESARQYDSKVLIEEAVV--GSEVGCAVLGN 222 (343)
T ss_pred ---hhhhcCCCEEEEeCCCCC---CCCEEEeCCHHHHHHHHHHHHhcCCcEEEECCcC--CEEEEEEEEcC
Confidence 124589999999977643 456778999888742 356899999997 45556667765
No 45
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=97.03 E-value=0.0032 Score=59.16 Aligned_cols=101 Identities=11% Similarity=0.142 Sum_probs=66.7
Q ss_pred eEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEc-cCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 101 VTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 101 v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~-~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
+.++ -++++++...|+..+.+.+.+. .+.+|++.... .+..+..+.+ ..+.||+|+||...+ .|+.
T Consensus 100 ~~~~g~~~~~~~~~~dK~~~k~~l~~~-------gIp~p~~~~~~~~~~~e~~~~~--~~~~~P~VvKP~~g~---gs~G 167 (450)
T PRK06111 100 IVFIGPSADIIAKMGSKIEARRAMQAA-------GVPVVPGITTNLEDAEEAIAIA--RQIGYPVMLKASAGG---GGIG 167 (450)
T ss_pred CeEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcCcCcCCHHHHHHHH--HHhCCCEEEEeCCCC---CCce
Confidence 4444 5588899999999999988864 36677763221 2222322222 347899999997654 4678
Q ss_pred EEEEeccccccC-------------CCCceeEEEeeecCcEEEEEEEec
Q 027466 179 LSLAYDQYSLKK-------------LEPPLVLQEFVNHGMQMAFGYLAD 214 (223)
Q Consensus 179 Maivf~~~gL~~-------------l~~P~VlQeFINH~gvlfKVYViG 214 (223)
+.++.+++.|.+ -..++++||||.. +.-+-+.+++
T Consensus 168 v~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~ 215 (450)
T PRK06111 168 MQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIED-PRHIEIQLLA 215 (450)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCC-CcEEEEEEEE
Confidence 899999887742 1358999999974 3334544444
No 46
>PLN02735 carbamoyl-phosphate synthase
Probab=96.89 E-value=0.0089 Score=63.32 Aligned_cols=153 Identities=12% Similarity=0.134 Sum_probs=93.3
Q ss_pred HHhHHHhcCcEEEEeeCCCCCC------------------------CCCCeeEEEeccCCh---HHHHHHH--HHHHhCC
Q 027466 49 LEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGK---EWRQILE--EYRQTHP 99 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~pl~------------------------~QgpfDvILHKltd~---~~~~~lq--~y~~~hP 99 (223)
+...+++.|+..+.+|.+-... .+..+|.|+-=+-++ .....+. ...+++-
T Consensus 49 ~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~Iip~~gg~~gl~la~~l~~~g~Le~~G 128 (1102)
T PLN02735 49 ACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYG 128 (1102)
T ss_pred HHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCEEEECCCchhhHHHHHHHhhhCHHHHCC
Confidence 5667788999999999864311 112345555433222 1111121 1223332
Q ss_pred CeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCc-cceEEeeecccCCCCCee
Q 027466 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~-fP~I~KplvA~Gs~~SH~ 178 (223)
=-.+--++++++...||..+-+.++++ .+.+|++..+++. ++..+..+ .+. ||+|+||.-..|+. .
T Consensus 129 I~~~G~~~~ai~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s~-eea~~~~~--~iG~yPvVVKP~~~~GG~---G 195 (1102)
T PLN02735 129 VELIGAKLDAIKKAEDRELFKQAMEKI-------GLKTPPSGIATTL-DECFEIAE--DIGEFPLIIRPAFTLGGT---G 195 (1102)
T ss_pred CEEECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeeEeCCH-HHHHHHHH--HhCCCCEEEEeCCCCCCC---c
Confidence 122335778888999999888888764 5788999988532 22222222 354 99999998755554 5
Q ss_pred EEEEeccccccC---------CCCceeEEEeeecCcEEEEEEEecc
Q 027466 179 LSLAYDQYSLKK---------LEPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 179 Maivf~~~gL~~---------l~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
+.++.|++.|.+ ...++++|||+.- ..=|=|=|++|
T Consensus 196 v~iv~n~eEL~~a~~~a~~~s~~~~VLVEe~I~G-~kE~ev~Vl~D 240 (1102)
T PLN02735 196 GGIAYNKEEFETICKAGLAASITSQVLVEKSLLG-WKEYELEVMRD 240 (1102)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCeEEEEEecCC-CeEEEEEEEEc
Confidence 679999887743 2358999999963 33344555554
No 47
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=96.87 E-value=0.011 Score=62.90 Aligned_cols=104 Identities=8% Similarity=0.080 Sum_probs=69.7
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEE-ccCCCCchHHHHhcCCccceEEeeecccCCCCCe
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i-~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH 177 (223)
.+.++ -++++++.+.|+..+.+.+.+. .+.+|++... ..+.++..+.. +.+.||+|+||.... .+.
T Consensus 99 Gi~fiGps~e~i~~~~DK~~ar~la~~~-------GVPvpp~t~~~v~~~eea~~~a--e~iGyPvIVKP~~GG---GGr 166 (1143)
T TIGR01235 99 GIIFIGPKAEVMDQLGDKVAARNLAIKA-------GVPVVPGTDGPPETMEEVLDFA--AAIGYPVIIKASWGG---GGR 166 (1143)
T ss_pred CCcccCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccCcCCHHHHHHHH--HHcCCCEEEEECCCC---CCC
Confidence 34444 5578999999999998888764 4666665421 12222222222 357899999995544 467
Q ss_pred eEEEEeccccccCC-------------CCceeEEEeeecCcEEEEEEEecce
Q 027466 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 178 ~Maivf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
.|.++.+++.|.+. ..++++|+||.. +.=+-|-|+||.
T Consensus 167 G~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g-~reIeVqVlgD~ 217 (1143)
T TIGR01235 167 GMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIER-PRHIEVQLLGDK 217 (1143)
T ss_pred ccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCC-CeEEEEEEEEeC
Confidence 89999998776421 358999999964 445677777775
No 48
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=96.87 E-value=0.02 Score=60.24 Aligned_cols=141 Identities=15% Similarity=0.239 Sum_probs=90.4
Q ss_pred HHhHHHhcCcEEEEeeCCCCCC------------------------CCCCeeEEEeccCChH---HHHHH--HHHHHhCC
Q 027466 49 LEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGKE---WRQIL--EEYRQTHP 99 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~pl~------------------------~QgpfDvILHKltd~~---~~~~l--q~y~~~hP 99 (223)
....+++.|+..|.+|.+-+.. ++..+|.|+-=+.++. ....+ +...+++
T Consensus 32 ~~kalke~G~~vi~v~~np~~~~~~~~~aD~~y~~p~~~~~v~~ii~~e~~DaIlp~~gg~~~l~la~~l~~~~~le~~- 110 (1050)
T TIGR01369 32 ACKALKEEGYRVILVNSNPATIMTDPEMADKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKY- 110 (1050)
T ss_pred HHHHHHHcCCEEEEEecchhhccCChhcCCEEEECCCCHHHHHHHHHHhCCCEEEECCCChhHHHHHhhHHHHhHHHHC-
Confidence 5566788899999999875310 1124566554332221 11111 1223333
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
.+.++ -++++++...||..+.+.+.++ .+.+|++..+++. ++..+.. ..+.||+|+||.... .+..
T Consensus 111 Gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~s~-~e~~~~~--~~igyPvIVKP~~g~---gg~G 177 (1050)
T TIGR01369 111 GVEVLGTPVEAIKKAEDRELFREAMKEI-------GEPVPESEIAHSV-EEALAAA--KEIGYPVIVRPAFTL---GGTG 177 (1050)
T ss_pred CCEEECCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCeeecCCH-HHHHHHH--HHhCCCeEEECCCCC---CCCC
Confidence 45444 7789999999999999998864 4778999888532 2222222 357899999998543 4566
Q ss_pred EEEEeccccccCC-------C--CceeEEEeeec
Q 027466 179 LSLAYDQYSLKKL-------E--PPLVLQEFVNH 203 (223)
Q Consensus 179 Maivf~~~gL~~l-------~--~P~VlQeFINH 203 (223)
+.++.|++.|... . .++++||||+-
T Consensus 178 v~iv~~~eeL~~~~~~~~~~s~~~~vlVEe~I~G 211 (1050)
T TIGR01369 178 GGIAYNREELKEIAERALSASPINQVLVEKSLAG 211 (1050)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCcEEEEEcccC
Confidence 7789998877432 1 48999999984
No 49
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=96.72 E-value=0.0068 Score=57.39 Aligned_cols=100 Identities=9% Similarity=0.124 Sum_probs=66.2
Q ss_pred EeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE-EEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEE
Q 027466 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL-VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (223)
Q Consensus 103 VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v-~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Mai 181 (223)
+--++++++.+.|+..+.+.+.+. .+.+|++. .+-.+.++..+.. ..+.||+|+||....| |.-+.+
T Consensus 103 ~g~~~~~~~~~~DK~~~r~~l~~~-------gip~pp~~~~~~~~~~e~~~~~--~~ig~PvvvKP~~g~g---s~Gv~~ 170 (449)
T TIGR00514 103 IGPSAESIRLMGDKVSAIETMKKA-------GVPCVPGSDGLVEDEEENVRIA--KRIGYPVIIKATAGGG---GRGMRV 170 (449)
T ss_pred ECcCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCcCCHHHHHHHH--HHhCCCEEEEeCCCCC---CCccEE
Confidence 346789999999999999988764 46676654 1212222222222 3578999999977655 457778
Q ss_pred EeccccccCC-------------CCceeEEEeeecCcEEEEEEEecc
Q 027466 182 AYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 182 vf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
+.+++.|.+. ..++++||||.. +.-|=|-|++|
T Consensus 171 v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (449)
T TIGR00514 171 VREPDELVKSISMTRAEAKAAFGNDGVYIEKYIEN-PRHVEIQVLAD 216 (449)
T ss_pred ECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCC-CeEEEEEEEEc
Confidence 9998777431 357999999964 33344444543
No 50
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=96.71 E-value=0.0074 Score=56.85 Aligned_cols=99 Identities=9% Similarity=0.142 Sum_probs=67.3
Q ss_pred EeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEE
Q 027466 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (223)
Q Consensus 103 VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Ma 180 (223)
+--++++++.+.|+..|.+.+.+. .+.+|++. .++ +.++..+.. +.+.||+|+||.... .|..+.
T Consensus 103 ~g~~~~~~~~~~DK~~~r~~l~~~-------gIp~pp~~~~~v~-~~~~~~~~~--~~~g~PvvvKP~~g~---gs~Gv~ 169 (451)
T PRK08591 103 IGPSAETIRLMGDKVTAKATMKKA-------GVPVVPGSDGPVD-DEEEALAIA--KEIGYPVIIKATAGG---GGRGMR 169 (451)
T ss_pred ECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHHH--HHcCCCEEEEECCCC---CCceEE
Confidence 346889999999999999998864 35666653 343 222222222 357899999997654 456788
Q ss_pred EEeccccccCC-------------CCceeEEEeeecCcEEEEEEEecc
Q 027466 181 LAYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 181 ivf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
++.+++.|.+. .+++++||||.. +.-|=|-++||
T Consensus 170 iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g-~~e~~v~v~~d 216 (451)
T PRK08591 170 VVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLEN-PRHIEIQVLAD 216 (451)
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC-CcEEEEEEEEc
Confidence 99998877421 357999999974 44455555554
No 51
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=96.69 E-value=0.006 Score=58.37 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=69.0
Q ss_pred EeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEE
Q 027466 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (223)
Q Consensus 103 VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Ma 180 (223)
+--++++++.+.|+..+-+.+.+. .|.+|++. .++ +.++..+.. +.+.||+|+||.... .+.-|.
T Consensus 106 igps~~ai~~~~DK~~~r~~l~~~-------GIp~~p~~~~~v~-~~~e~~~~~--~~igyPvvvKp~~gg---gg~Gv~ 172 (467)
T PRK12833 106 VGPDAQTIRTMGDKARARRTARRA-------GVPTVPGSDGVVA-SLDAALEVA--ARIGYPLMIKAAAGG---GGRGIR 172 (467)
T ss_pred cCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcCcCcC-CHHHHHHHH--HHhCCCEEEEECCCC---CCCeEE
Confidence 445678999999999999988764 36666664 443 222222222 347899999997654 467889
Q ss_pred EEeccccccC------------C-CCceeEEEeeecCcEEEEEEEecce
Q 027466 181 LAYDQYSLKK------------L-EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 181 ivf~~~gL~~------------l-~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
++.+++.|.+ + ..++++|+||..+ .=+=|-|+||.
T Consensus 173 ~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~-~ei~v~v~~dg 220 (467)
T PRK12833 173 VAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA-RHIEVQILGDG 220 (467)
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-EEEEEEEEeCC
Confidence 9999887753 1 4579999999763 55555566664
No 52
>PLN02257 phosphoribosylamine--glycine ligase
Probab=96.68 E-value=0.03 Score=53.50 Aligned_cols=124 Identities=14% Similarity=0.150 Sum_probs=81.8
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHh
Q 027466 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~ 125 (223)
.++.++|++.++++|-+..+.|+ ...+-+..+++ .+.++ -+.++++...||..+-+.+.+
T Consensus 52 ~~l~~~a~~~~id~vvvg~E~~l------------------v~~~~d~l~~~-Gi~~~Gps~~aa~l~~dK~~~K~~l~~ 112 (434)
T PLN02257 52 AAVISFCRKWGVGLVVVGPEAPL------------------VAGLADDLVKA-GIPTFGPSAEAAALEGSKNFMKDLCDK 112 (434)
T ss_pred HHHHHHHHHcCCCEEEECCchHH------------------HHHHHHHHHHC-CCCEECChHHHHHHHcCHHHHHHHHHH
Confidence 35667777777777665544332 22343344433 45555 556788888999999888876
Q ss_pred ccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------------CC
Q 027466 126 MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------------LE 192 (223)
Q Consensus 126 l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------------l~ 192 (223)
. .|.+|++..+++ .++..+.+. .+.||+|+||.-. +.+.-+.++.+.+.+.+ ..
T Consensus 113 ~-------GIptp~~~~~~~-~~e~~~~~~--~~g~PvVVKp~~~---~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~ 179 (434)
T PLN02257 113 Y-------KIPTAKYETFTD-PAAAKKYIK--EQGAPIVVKADGL---AAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAG 179 (434)
T ss_pred c-------CCCCCCeEEeCC-HHHHHHHHH--HcCCCEEEEcCCC---CCCCCEEEECCHHHHHHHHHHHHhhhhccCCC
Confidence 4 578899988852 223233332 4679999999833 35678889999766521 13
Q ss_pred CceeEEEeee
Q 027466 193 PPLVLQEFVN 202 (223)
Q Consensus 193 ~P~VlQeFIN 202 (223)
.++++||||.
T Consensus 180 ~~vlIEefi~ 189 (434)
T PLN02257 180 SEVVVEEFLD 189 (434)
T ss_pred CeEEEEECCC
Confidence 5899999997
No 53
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=96.64 E-value=0.016 Score=61.16 Aligned_cols=141 Identities=17% Similarity=0.203 Sum_probs=87.9
Q ss_pred HHhHHHhcCcEEEEeeCCCCCC------------------------CCCCeeEEEeccCCh---HHHHHHH--HHHHhCC
Q 027466 49 LEGLARNKGILFVAIDQNRPLS------------------------DQGPFDIVLHKLTGK---EWRQILE--EYRQTHP 99 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~pl~------------------------~QgpfDvILHKltd~---~~~~~lq--~y~~~hP 99 (223)
+....++.|+..+-+|.+-... ....+|.|+-=+-++ .....+. ...+++
T Consensus 33 ~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~- 111 (1068)
T PRK12815 33 ACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQY- 111 (1068)
T ss_pred HHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHC-
Confidence 5556677899988888664311 012455555433222 1111111 123333
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
++.++ -++++++...||..+-+.++++ .+.+|+++.+++ .++..+.. ..+.||+|+||....| +..
T Consensus 112 gv~l~g~~~~~i~~~~DK~~~k~~l~~~-------GIpvp~~~~v~s-~ee~~~~~--~~igyPvVVKP~~g~g---G~G 178 (1068)
T PRK12815 112 GVELLGTNIEAIQKGEDRERFRALMKEL-------GEPVPESEIVTS-VEEALAFA--EKIGFPIIVRPAYTLG---GTG 178 (1068)
T ss_pred CCEEECCCHHHHHHhcCHHHHHHHHHHc-------CcCCCCceeeCC-HHHHHHHH--HHcCCCEEEEECcCCC---CCc
Confidence 34444 5678999999999998888764 477899998853 22222222 3478999999986544 455
Q ss_pred EEEEeccccccCC---------CCceeEEEeeec
Q 027466 179 LSLAYDQYSLKKL---------EPPLVLQEFVNH 203 (223)
Q Consensus 179 Maivf~~~gL~~l---------~~P~VlQeFINH 203 (223)
..++.|++.|... ..++++||||+.
T Consensus 179 v~iv~~~eEL~~a~~~~~~~s~~~~vLVEe~I~G 212 (1068)
T PRK12815 179 GGIAENLEELEQLFKQGLQASPIHQCLLEESIAG 212 (1068)
T ss_pred eEEECCHHHHHHHHHHHHhcCCCCeEEEEEccCC
Confidence 6789998777432 148999999974
No 54
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=96.52 E-value=0.053 Score=51.65 Aligned_cols=137 Identities=13% Similarity=0.156 Sum_probs=84.6
Q ss_pred chhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChh-hHHhhcCHHHHHHHH
Q 027466 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY-AIQHLHNRQSMLQCV 123 (223)
Q Consensus 45 ~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~-~i~~L~dR~~~~~~l 123 (223)
...++.++|++.++++|-...+.| ..+.+-+..++. .+.++-|-. +.+...||..+-+.+
T Consensus 56 d~~~l~~~a~~~~iD~Vv~g~E~~------------------l~~glad~~~~~-Gip~~Gp~~~aa~le~dK~~~K~~l 116 (426)
T PRK13789 56 DKSSVQSFLKSNPFDLIVVGPEDP------------------LVAGFADWAAEL-GIPCFGPDSYCAQVEGSKHFAKSLM 116 (426)
T ss_pred CHHHHHHHHHHcCCCEEEECCchH------------------HHHHHHHHHHHc-CCCcCCCHHHHHHHHcCHHHHHHHH
Confidence 444566777777777666544322 222232332222 355665543 556667888888888
Q ss_pred HhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC----C--------
Q 027466 124 ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----L-------- 191 (223)
Q Consensus 124 ~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~----l-------- 191 (223)
.+. .|.+|++..++ +.++..+.++ .+.||+|+||.- .+.+.-+.++.+.+.+.+ +
T Consensus 117 ~~~-------gIpt~~~~~~~-~~~ea~~~~~--~~~~PvVVKp~~---~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~ 183 (426)
T PRK13789 117 KEA-------KIPTASYKTFT-EYSSSLSYLE--SEMLPIVIKADG---LAAGKGVTVATEKKMAKRALKEIFKDKKFGQ 183 (426)
T ss_pred HHc-------CCCCCCeEeeC-CHHHHHHHHH--hcCCCEEEEeCC---CCCCCcEEEECCHHHHHHHHHHHHhhccccC
Confidence 763 47789998885 3223333333 468999999973 345677889999765522 1
Q ss_pred -CCceeEEEeeecCcEEEEEEEecc
Q 027466 192 -EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 192 -~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
...+++|||+. |.=|=|.+++|
T Consensus 184 ~~~~vlIEEfl~--G~E~Sv~~~~d 206 (426)
T PRK13789 184 SGNQVVIEEFME--GQEASIFAISD 206 (426)
T ss_pred CCCeEEEEECcC--CeEEEEEEEEC
Confidence 13799999997 35555555543
No 55
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=96.52 E-value=0.0099 Score=57.74 Aligned_cols=104 Identities=8% Similarity=0.139 Sum_probs=71.4
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEE-ccCCCCchHHHHhcCCccceEEeeecccCCCCCe
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i-~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH 177 (223)
.+.++ -++++++.+.|+..+-+.+++. .|.+|+.... -.+.++..+.. ..+.||+|+||.... .+.
T Consensus 99 gi~~iGps~~~i~~~~DK~~~k~~l~~~-------GVpv~p~~~~~v~~~~e~~~~a--~~igyPvvIKp~~Gg---GG~ 166 (499)
T PRK08654 99 GIVFIGPSSDVIEAMGSKINAKKLMKKA-------GVPVLPGTEEGIEDIEEAKEIA--EEIGYPVIIKASAGG---GGI 166 (499)
T ss_pred CCcEECCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCCcCcCCCCHHHHHHHH--HHhCCCEEEEeCCCC---CCC
Confidence 45555 4689999999999999988764 3666665432 12222222222 347899999997654 467
Q ss_pred eEEEEeccccccCC-------------CCceeEEEeeecCcEEEEEEEecce
Q 027466 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 178 ~Maivf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
-|.++.+++.|.+. ..++++|+||.. +.-+-|-|+||.
T Consensus 167 Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~-~r~ieVqvl~d~ 217 (499)
T PRK08654 167 GMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEK-PRHIEIQILADK 217 (499)
T ss_pred eEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCC-CcEEEEEEEEcC
Confidence 99999999877321 358999999974 344677777765
No 56
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=96.46 E-value=0.015 Score=55.93 Aligned_cols=104 Identities=7% Similarity=0.085 Sum_probs=68.7
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCc-eEEEc-cCCCCchHHHHhcCCccceEEeeecccCCCCC
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QLVIE-RDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~-~v~i~-~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~S 176 (223)
.+.++ -++++++.+.|+..+.+.+.+. .|.+|+ +..+. .+.++..+.. ..+.||+|+||.... .|
T Consensus 98 Gi~~iGps~~~i~~~~DK~~~k~~l~~~-------gIpvpp~~~~~~~~~~~~~~~~~--~~igyPvvvKP~~gg---Gg 165 (478)
T PRK08463 98 GIIFIGPKSEVIRKMGNKNIARYLMKKN-------GIPIVPGTEKLNSESMEEIKIFA--RKIGYPVILKASGGG---GG 165 (478)
T ss_pred CCceecCCHHHHHhhCcHHHHHHHHHHc-------CCCCCCCccccCCCCHHHHHHHH--HHhCCCEEEEeCCCC---CC
Confidence 45555 5589999999999999988864 356655 43332 1222222222 357899999997654 45
Q ss_pred eeEEEEeccccccCC-------------CCceeEEEeeecCcEEEEEEEecce
Q 027466 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 177 H~Maivf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
..|.++.+++.|... +.++++|+||..+ .-+-+-|+||.
T Consensus 166 ~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~-~~iev~v~~d~ 217 (478)
T PRK08463 166 RGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNP-RHIEFQILGDN 217 (478)
T ss_pred CceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-eEEEEEEEEcC
Confidence 788899998877431 3589999999743 32344466654
No 57
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.33 E-value=0.054 Score=55.27 Aligned_cols=151 Identities=11% Similarity=0.003 Sum_probs=98.5
Q ss_pred HHHhcCcEEEEeeCCCCC----C---------------------C-CCCeeEEEeccCC---hHHHHHHHHHHHhCCCeE
Q 027466 52 LARNKGILFVAIDQNRPL----S---------------------D-QGPFDIVLHKLTG---KEWRQILEEYRQTHPEVT 102 (223)
Q Consensus 52 ~~~~~gi~fv~iD~~~pl----~---------------------~-QgpfDvILHKltd---~~~~~~lq~y~~~hP~v~ 102 (223)
.-++.|.+.+++|.++.= . + ...+|+++-=+.+ ++ ..+|.+.+.. .++
T Consensus 478 al~~~~~~v~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vf~~lhG~~ged--g~iq~~le~~-gip 554 (809)
T PRK14573 478 YLSPEFYDVSYFLINRQGLWETVSSLETAIEEDSGKSVLSSEIAQALAKVDVVLPILHGPFGED--GTMQGFLEII-GKP 554 (809)
T ss_pred hhcccCcEEEEEEECCCCeEEecccccccccccccccccchhhhhccccCCEEEEcCCCCCCCC--hHHHHHHHHc-CCC
Confidence 335679999999887630 0 0 0235666544433 32 3466666654 355
Q ss_pred Ee-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC--CCchHHH--HhcCCccceEEeeecccCCCCCe
Q 027466 103 VL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA--SSIPDVV--LKAGLTLPLVAKPLVADGSAKSH 177 (223)
Q Consensus 103 VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~--~~~~~~l--~~agl~fP~I~KplvA~Gs~~SH 177 (223)
.+ -+..+....+|+..+-+.+++. .|.+|++..++... .+....+ ....+.||+|+||.-..|| -
T Consensus 555 y~Gs~~~asal~~DK~~~K~~l~~~-------GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg~P~iVKP~~~GsS---~ 624 (809)
T PRK14573 555 YTGPSLAFSAIAMDKVLTKRFASDV-------GVPVVPYQPLTLAGWKREPELCLAHIVEAFSFPMFVKTAHLGSS---I 624 (809)
T ss_pred eeCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhcccChHHHHHHHHHhcCCCEEEeeCCCCCC---C
Confidence 44 4667788899999988888753 58899999886321 1111111 1246899999999886543 5
Q ss_pred eEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecce
Q 027466 178 ELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 178 ~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
-+.+|.|++.|.+ .+.+++++|||. +|.=|=|-|+|+.
T Consensus 625 Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~i~-~grEi~v~vl~~~ 669 (809)
T PRK14573 625 GVFEVHNVEELRDKISEAFLYDTDVFVEESRL-GSREIEVSCLGDG 669 (809)
T ss_pred CEEEECCHHHHHHHHHHHHhcCCcEEEEeccC-CCEEEEEEEEeCC
Confidence 7779999887743 356899999986 4566677777764
No 58
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=96.31 E-value=0.014 Score=59.53 Aligned_cols=81 Identities=10% Similarity=0.046 Sum_probs=53.4
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEec---ccccc-------CCCCceeEEEeeec
Q 027466 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD---QYSLK-------KLEPPLVLQEFVNH 203 (223)
Q Consensus 134 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~---~~gL~-------~l~~P~VlQeFINH 203 (223)
.|.||++.++.+.. +..+..... ..+|+|+||.-..++..- +++.+ .+.+. +....+++|+||.
T Consensus 487 GIPVP~g~~~~~~~-~a~~~~~~~-~g~PVVVKP~~g~~G~GV---si~~~~~~~eel~~Al~~A~~~~~~VLVEefI~- 560 (737)
T TIGR01435 487 GFRVPFGDEFSSQA-LALEAFSLF-ENKAIVVKPKSTNYGLGI---TIFKNGFTLEDFQEALNIAFSEDSSVIIEEFLP- 560 (737)
T ss_pred CcCCCCEEEECCHH-HHHHHHHHh-cCCCEEEeeCCCCCcCCe---EEecCcCCHHHHHHHHHHHHhcCCeEEEEeccc-
Confidence 58999999885321 112222211 168999999886655433 34444 33332 1245799999996
Q ss_pred CcEEEEEEEecceEEEEE
Q 027466 204 GMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 204 ~gvlfKVYViG~~~~v~~ 221 (223)
|.=|-|+|+|+++.-++
T Consensus 561 -G~EyRv~VIg~kvvaa~ 577 (737)
T TIGR01435 561 -GTEYRFFVLNDKVEAVL 577 (737)
T ss_pred -CCEEEEEEECCeEEEEE
Confidence 89999999999977665
No 59
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=96.15 E-value=0.094 Score=50.08 Aligned_cols=140 Identities=9% Similarity=0.024 Sum_probs=81.9
Q ss_pred chhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHH
Q 027466 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCV 123 (223)
Q Consensus 45 ~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l 123 (223)
..+.+.++|++.++++|-.-.+.+|. .....++.+. .+.++ .+.++++...|+..|.+.+
T Consensus 53 d~e~l~~~~~~~~id~Vi~~~d~~l~-----------------~~~~~~l~~~--Gi~v~gps~~~a~~e~dK~~~k~~l 113 (435)
T PRK06395 53 DYDLIEDFALKNNVDIVFVGPDPVLA-----------------TPLVNNLLKR--GIKVASPTMEAAMIETSKMFMRYLM 113 (435)
T ss_pred CHHHHHHHHHHhCCCEEEECCChHHH-----------------HHHHHHHHHC--CCcEECCCHHHHHHhhCHHHHHHHH
Confidence 33467778888887666654433321 1122233333 46665 7788999999999999988
Q ss_pred HhccccCCCCcccCC-ceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEecc-cc----cc------CC
Q 027466 124 ADMNLSNSYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ-YS----LK------KL 191 (223)
Q Consensus 124 ~~l~~~~~~~~i~~P-~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~-~g----L~------~l 191 (223)
.+. .|.+| .+..+.++ .+..... ..+.||+|+||.-..|+ --+.++.+. +. +. +-
T Consensus 114 ~~~-------gIptp~~~~~~~~~-~e~~~~~--~~~~~PvVVKP~~~sgg---kGV~v~~~~~~~~~ea~~~~~~~~~~ 180 (435)
T PRK06395 114 ERH-------NIPGNINFNACFSE-KDAARDY--ITSMKDVAVKPIGLTGG---KGVKVTGEQLNSVDEAIRYAIEILDR 180 (435)
T ss_pred HHC-------CcCCCcccceeCCh-HHHHHHH--HhhCCCEEEEeCCCCCC---CCeEEecCchhhHHHHHHHHHHHhCC
Confidence 753 57776 44344322 2222222 23589999999766555 456677542 12 21 12
Q ss_pred CCceeEEEeeecCcEEEEEE--EecceEE
Q 027466 192 EPPLVLQEFVNHGMQMAFGY--LADIHYI 218 (223)
Q Consensus 192 ~~P~VlQeFINH~gvlfKVY--ViG~~~~ 218 (223)
..++++|||+. |.=|=|. +=|+.++
T Consensus 181 ~~~viIEEfl~--G~E~Svd~~~dg~~~~ 207 (435)
T PRK06395 181 DGVVLIEKKMT--GEEFSLQAFSDGKHLS 207 (435)
T ss_pred CCcEEEEeecC--CceEEEEEEEcCCeEE
Confidence 35899999995 3333333 3355543
No 60
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.96 E-value=0.012 Score=62.65 Aligned_cols=103 Identities=12% Similarity=0.183 Sum_probs=69.1
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEE--EccCCCCchHHHHhcCCccceEEeeecccCCCCC
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~--i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~S 176 (223)
.+.++ -++++++.+.|+..+.+.+.+. .+.+|+... ++ +.+++.+.. ..+.||+|+||....| +
T Consensus 103 Gi~fiGps~eai~~~~DK~~~r~~l~~~-------GVPv~P~~~~~v~-s~eea~~~a--~~iGyPvVVKP~~GgG---G 169 (1146)
T PRK12999 103 GITFIGPTAEVLRLLGDKVAARNAAIKA-------GVPVIPGSEGPID-DIEEALEFA--EEIGYPIMLKASAGGG---G 169 (1146)
T ss_pred CCcccCCCHHHHHHhCCHHHHHHHHHHC-------CCCCCCCcccCCC-CHHHHHHHH--HHhCCCEEEEECCCCC---C
Confidence 34444 5588999999999999988764 355544432 32 222222222 3578999999977654 6
Q ss_pred eeEEEEeccccccC------------C-CCceeEEEeeecCcEEEEEEEecce
Q 027466 177 HELSLAYDQYSLKK------------L-EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 177 H~Maivf~~~gL~~------------l-~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
.-|.+|.+++.|.. + ..++++|+||.. +.-+=|-++||.
T Consensus 170 rGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g-~~~ieVqvl~D~ 221 (1146)
T PRK12999 170 RGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVEN-PRHIEVQILGDK 221 (1146)
T ss_pred CCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCC-CeEEEEEEEEEC
Confidence 78999999887743 1 368999999974 344556666653
No 61
>KOG1057 consensus Arp2/3 complex-interacting protein VIP1/Asp1, involved in regulation of actin cytoskeleton [Cytoskeleton]
Probab=95.87 E-value=0.085 Score=54.18 Aligned_cols=180 Identities=21% Similarity=0.258 Sum_probs=116.9
Q ss_pred CcEEEEEEeChhhhhccchhh-HHhHHHhcCcEEEEe----eCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeE
Q 027466 28 KLVVVGYALTSKKTKSFLQPK-LEGLARNKGILFVAI----DQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVT 102 (223)
Q Consensus 28 ~~~~VGy~l~~kK~~~f~~~~-~~~~~~~~gi~fv~i----D~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~ 102 (223)
+..+||.|.-+||.++==-.. +..++.-.=|+.|-. =++.|.+.=--.||+|-=-+.-==-+..++|.+.. +-.
T Consensus 39 r~i~vGICaM~kK~~SKPm~~il~rli~f~~~~~vvf~e~viL~EpVENWP~CdcLIsFhSsGFPLdKAiaY~kLR-nPF 117 (1018)
T KOG1057|consen 39 RQIVVGICAMAKKSKSKPMKEILERLILFKYITVVVFEEEVILREPVENWPLCDCLISFHSKGFPLDKAVAYAKLR-NPF 117 (1018)
T ss_pred cceEEEEeechhhhccChHHHHHHHHHhcceeEEEEeccceeeccccccCcccceEEEeccCCCChHHHHHHHHhc-CCe
Confidence 345999999999976632111 223333222232221 14445554455676665444321235678898854 335
Q ss_pred EeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCC--chHHH------HhcC--CccceEEeeecccC
Q 027466 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS--IPDVV------LKAG--LTLPLVAKPLVADG 172 (223)
Q Consensus 103 VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~--~~~~l------~~ag--l~fP~I~KplvA~G 172 (223)
||.-++-++.|.||...|+.|+. ..|.+|++..++++..+ .-..+ .-.| ..=|+|-||+-
T Consensus 118 viNdL~mQyll~DRR~Vy~iLe~-------~gI~~PRya~~nr~~pn~~~~~lie~eD~vEVnGevf~KPFVEKPVs--- 187 (1018)
T KOG1057|consen 118 VINDLDMQYLLQDRREVYSILEA-------EGIPLPRYAILNRDPPNPKLCNLIEGEDHVEVNGEVFQKPFVEKPVS--- 187 (1018)
T ss_pred eeccccHHHHHHHHHHHHHHHHH-------cCCCCceeEeecCCCCChHHhhhhcCCCeEEEcceeccCCcccCCCC---
Confidence 67778899999999999999885 36888999988765431 11112 2234 34599999986
Q ss_pred CCCCeeEEEEecc---ccccCC-------------------CCceeEEEeeecCcEEEEEEEecceEEE
Q 027466 173 SAKSHELSLAYDQ---YSLKKL-------------------EPPLVLQEFVNHGMQMAFGYLADIHYII 219 (223)
Q Consensus 173 s~~SH~Maivf~~---~gL~~l-------------------~~P~VlQeFINH~gvlfKVYViG~~~~v 219 (223)
++-|..+|-|-- .|-..| ....+.-||.+-+|.=-|||-||..|..
T Consensus 188 -~EDHNIYIYYPsSaGGGsqrLFRKIgnRSS~y~P~~~vRkeGSyIYEeFMptdgtDVKvYTVGp~YaH 255 (1018)
T KOG1057|consen 188 -AEDHNIYIYYPSSAGGGSQRLFRKIGNRSSEYHPDSSVRKEGSYIYEEFMPTDGTDVKVYTVGPDYAH 255 (1018)
T ss_pred -cccccEEEEecCCCCccHHHHHHHhcccccccCCccccccccceehhhhcCCCCccceEEeeCcchhh
Confidence 578999998864 222111 1258999999999999999999988753
No 62
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=95.57 E-value=0.06 Score=51.67 Aligned_cols=102 Identities=8% Similarity=0.105 Sum_probs=67.2
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEE--EccCCCCchHHHHhcCCccceEEeeecccCCCCC
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--IERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~--i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~S 176 (223)
.+.++ -++++++.+.|+..+.+.+.+. .+.+|++.. ++ +.++..+.. ..+.||+|+||.... .|
T Consensus 98 Gi~~igps~~~i~~~~DK~~~r~~l~~~-------GIp~pp~~~~~~~-~~~e~~~~~--~~igyPvvvKp~~gg---Gg 164 (472)
T PRK07178 98 GIKFIGPSAEVIRRMGDKTEARRAMIKA-------GVPVTPGSEGNLA-DLDEALAEA--ERIGYPVMLKATSGG---GG 164 (472)
T ss_pred CCCccCCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCCcCcCCC-CHHHHHHHH--HHcCCcEEEEeCCCC---CC
Confidence 45433 5688999999999999988864 356666543 22 222222222 357899999997654 46
Q ss_pred eeEEEEeccccccC------------C-CCceeEEEeeecCcEEEEEEEecc
Q 027466 177 HELSLAYDQYSLKK------------L-EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 177 H~Maivf~~~gL~~------------l-~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
..|.++.+++.|.+ . ..++++|+||..+ .=+=|-|+||
T Consensus 165 ~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~-~eiev~v~~d 215 (472)
T PRK07178 165 RGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNP-KHIEVQILAD 215 (472)
T ss_pred CCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC-eEEEEEEEEE
Confidence 78899999988753 1 3579999999643 3344445544
No 63
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=95.13 E-value=0.097 Score=56.14 Aligned_cols=99 Identities=10% Similarity=0.112 Sum_probs=66.8
Q ss_pred EeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCc-eEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEE
Q 027466 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (223)
Q Consensus 103 VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~-~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Mai 181 (223)
+--++++++.+.|+..+-+.+++. .|.+|+ +..++ +.++..+.. ..+.||+|+||.... .+.-|.+
T Consensus 102 iGps~ea~~~~~DK~~ar~ll~~~-------GVPt~p~~~lv~-s~dea~~~a--~~igyPvVVKP~~gg---GG~GV~i 168 (1201)
T TIGR02712 102 VGPTPEQIRKFGLKHTARELAEAA-------GVPLLPGTGLLS-SLDEALEAA--KEIGYPVMLKSTAGG---GGIGMQK 168 (1201)
T ss_pred ECCCHHHHHHhcCHHHHHHHHHHC-------CCCCCCceeecC-CHHHHHHHH--HhcCCeEEEEECCCC---CCCCEEE
Confidence 335689999999999888888754 356544 54554 222222222 357899999997654 4578999
Q ss_pred EeccccccC----C---------CCceeEEEeeecCcEEEEEEEecc
Q 027466 182 AYDQYSLKK----L---------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 182 vf~~~gL~~----l---------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
+.+++.|.. + ..++++||||..+ .=+=|.++||
T Consensus 169 v~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g~-~eveV~v~~D 214 (1201)
T TIGR02712 169 CDSAAELAEAFETVKRLGESFFGDAGVFLERFVENA-RHVEVQIFGD 214 (1201)
T ss_pred ECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC-EEEEEEEEEC
Confidence 999887742 1 2479999999843 4455656654
No 64
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=94.98 E-value=0.94 Score=42.63 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=53.2
Q ss_pred EeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEE
Q 027466 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (223)
Q Consensus 103 VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maiv 182 (223)
+.=..++++...||..+-+.+++. .+.+|+++ + +. + .+.||+|+||..+. .+..-.++
T Consensus 111 ~~gn~~~l~~e~dK~~~k~~L~~a-------GIp~p~~~--~-~~----~-----~i~~PvIVKp~~g~---ggkGv~i~ 168 (358)
T PRK13278 111 MFGNREILRWEADRDKERKLLEEA-------GIRIPRKY--E-SP----E-----DIDRPVIVKLPGAK---GGRGYFIA 168 (358)
T ss_pred cCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEe--C-CH----H-----HcCCCEEEEeCCCC---CCCCeEEe
Confidence 334556677778888877777753 47778863 2 11 1 25699999995443 45677788
Q ss_pred ecccccc----CC--------CCceeEEEeeec
Q 027466 183 YDQYSLK----KL--------EPPLVLQEFVNH 203 (223)
Q Consensus 183 f~~~gL~----~l--------~~P~VlQeFINH 203 (223)
.+++.+. .+ ...+++||||.-
T Consensus 169 ~s~~El~~~~~~l~~~~~~~~~~~~iIEEfI~G 201 (358)
T PRK13278 169 KSPEEFKEKIDKLIERGLITEVEEAIIQEYVVG 201 (358)
T ss_pred CCHHHHHHHHHHHHhccccCCCCeEEEEecCCC
Confidence 8876552 21 468999999973
No 65
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=94.26 E-value=0.52 Score=44.80 Aligned_cols=138 Identities=20% Similarity=0.177 Sum_probs=91.2
Q ss_pred HHHhcCcEEEEeeCCCCCCC-CCCeeEEEeccCChH------------------HHHHHHHHHHhCCCeEEeCChhhHHh
Q 027466 52 LARNKGILFVAIDQNRPLSD-QGPFDIVLHKLTGKE------------------WRQILEEYRQTHPEVTVLDPPYAIQH 112 (223)
Q Consensus 52 ~~~~~gi~fv~iD~~~pl~~-QgpfDvILHKltd~~------------------~~~~lq~y~~~hP~v~VIDP~~~i~~ 112 (223)
-|+..|+.++.+|++.+=.. |--=++|....+|.+ |-...-++..++ +.|-=++++++.
T Consensus 19 aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~V~~~aL~~l~~~--~~v~p~~~~l~~ 96 (375)
T COG0026 19 AAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFENVPAEALEKLAAS--VKVFPSPDALRI 96 (375)
T ss_pred HHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeeccCCHHHHHHHHhh--cCcCCCHHHHHH
Confidence 44667999999998766333 333344444444431 222222344443 666678999999
Q ss_pred hcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC--
Q 027466 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-- 190 (223)
Q Consensus 113 L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-- 190 (223)
..||...=+.|.++ .+.+|.|..+++ .+++...+.+- .+|.|.|... |.=+-+-=.++.+++++..
T Consensus 97 ~qdR~~eK~~l~~~-------Gi~va~~~~v~~-~~el~~~~~~~--g~p~VlKtr~--gGYDGkGQ~~i~~~~~~~~~~ 164 (375)
T COG0026 97 AQDRLVEKQFLDKA-------GLPVAPFQVVDS-AEELDAAAADL--GFPAVLKTRR--GGYDGKGQWRIRSDADLELRA 164 (375)
T ss_pred HhhHHHHHHHHHHc-------CCCCCCeEEeCC-HHHHHHHHHHc--CCceEEEecc--ccccCCCeEEeeCcccchhhH
Confidence 99999888887754 588999999963 34555555544 4999999855 4446666778887766643
Q ss_pred -----CCCceeEEEeeecC
Q 027466 191 -----LEPPLVLQEFVNHG 204 (223)
Q Consensus 191 -----l~~P~VlQeFINH~ 204 (223)
...| |+-+||+=.
T Consensus 165 ~~~~~~~~~-vlE~fV~F~ 182 (375)
T COG0026 165 AGLAEGGVP-VLEEFVPFE 182 (375)
T ss_pred hhhhccCce-eEEeecccc
Confidence 1334 999998865
No 66
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=94.15 E-value=1.7 Score=42.33 Aligned_cols=133 Identities=12% Similarity=0.081 Sum_probs=79.7
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHh
Q 027466 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVAD 125 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~ 125 (223)
..+++.|++.++++|-+..+.| ..+.+-+..++. .+.++ -+.++.+...|+..|-+.+.+
T Consensus 59 ~~l~~~a~~~~id~Vi~g~E~~------------------l~~glad~l~~~-Gi~v~Gps~~aa~le~dK~~~K~~l~~ 119 (486)
T PRK05784 59 EEVKKVAKEVNPDLVVIGPEEP------------------LFAGVADVLREE-GFPVFGASSKCARIEKSKVWARELMWK 119 (486)
T ss_pred HHHHHHHHHhCCCEEEECCchH------------------HHHHHHHHHHhC-CCCEECCcHHHHHHhcCHHHHHHHHHH
Confidence 3577788888877666533221 222233333333 45444 556777888888877777775
Q ss_pred ccccCCCCcccCC-ceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEecccc---------c----c--
Q 027466 126 MNLSNSYGKVDVP-RQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYS---------L----K-- 189 (223)
Q Consensus 126 l~~~~~~~~i~~P-~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~g---------L----~-- 189 (223)
. .|.+| ++..++ +.++..+.+. . .+|+|+||.-.. .|--+.++.+.+. + .
T Consensus 120 ~-------gIpt~~~~~~~~-~~~ea~~~~~-~--~~PvVVKP~~~a---ggkGV~iv~~~~e~~~~~~~ea~~~a~~~~ 185 (486)
T PRK05784 120 Y-------SIPGRLRYKVFY-DVEEAAKFIE-Y--GGSVAIKPARQA---GGKGVKVIADLQAYLSQEKREALTKSVNDI 185 (486)
T ss_pred c-------CcCCCccceEeC-CHHHHHHHHh-h--cCCEEEeeCCCC---CCCCEEEECChhHhcchhHHHHHHHHHHHH
Confidence 3 46675 677764 3333333332 2 269999996544 4567888888541 1 1
Q ss_pred -----C---CCCceeEEEeeecCcEEEEEEEec
Q 027466 190 -----K---LEPPLVLQEFVNHGMQMAFGYLAD 214 (223)
Q Consensus 190 -----~---l~~P~VlQeFINH~gvlfKVYViG 214 (223)
. -..++|+|||+. |.=|=|.++.
T Consensus 186 ~~~~~~~g~~~~~VlIEEfL~--G~E~SV~al~ 216 (486)
T PRK05784 186 KEGSAYYKDVEPKILVEEKVD--GVEYTLQVLT 216 (486)
T ss_pred HHhHhhccCCCCeEEEEEccC--CeEEEEEEEE
Confidence 1 135899999998 4456666663
No 67
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=92.85 E-value=0.21 Score=41.03 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=32.7
Q ss_pred cCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccCC-C
Q 027466 114 HNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-E 192 (223)
Q Consensus 114 ~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l-~ 192 (223)
.|...+++.|.++ .+.+|..+..... ....+|+|+||.-.+|+. .+.++-+++.+... .
T Consensus 2 ~dK~~~~~~L~~~-------gi~~P~~~~~~~~----------~~~~~~~viKp~~G~Gg~---~i~~~~~~~~~~~~~~ 61 (161)
T PF02655_consen 2 SDKLKTYKFLKEL-------GIPVPTTLRDSEP----------EPIDGPWVIKPRDGAGGE---GIRIVDSEDELEEFLN 61 (161)
T ss_dssp TSHHHHHHHHTTT--------S--------EES----------S--SSSEEEEESS----------B--SS--TTE----
T ss_pred CCHHHHHHHHHcc-------CCCCCCccccccc----------cccCCcEEEEeCCCCCCC---CeEEECCchhhccccc
Confidence 4677788887754 4667833322211 123899999999988774 45566666655533 2
Q ss_pred CceeEEEeeecCcEEEEEEEec
Q 027466 193 PPLVLQEFVNHGMQMAFGYLAD 214 (223)
Q Consensus 193 ~P~VlQeFINH~gvlfKVYViG 214 (223)
.-.++||||. |.=|=+.++.
T Consensus 62 ~~~i~Qe~i~--G~~~Sv~~l~ 81 (161)
T PF02655_consen 62 KLRIVQEFIE--GEPYSVSFLA 81 (161)
T ss_dssp ---EEEE-----SEEEEEEEEE
T ss_pred cceEEeeeeC--CEEeEEEEEE
Confidence 2349999996 5555555553
No 68
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=92.55 E-value=0.45 Score=44.33 Aligned_cols=114 Identities=15% Similarity=0.265 Sum_probs=75.0
Q ss_pred eEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHH
Q 027466 76 DIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL 155 (223)
Q Consensus 76 DvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~ 155 (223)
|+++-..+.+...++-++|.+.-=.+.+-...+.+..+.|...+++.+++ ..+.+|.++.++ +.+++....
T Consensus 68 dv~~P~~~~~~l~~~r~~F~a~Gv~l~~~~~~~~l~~~~dK~~~y~~~~~-------~~ipvp~~~~v~-t~~el~~a~- 138 (329)
T PF15632_consen 68 DVFVPGRNRELLAAHRDEFEALGVKLLTASSAETLELADDKAAFYEFMEA-------NGIPVPPYWRVR-TADELKAAY- 138 (329)
T ss_pred eEEEcCccHHHHHHHHHHHHHhCCEEEecCCHHHHHHHhhHHHHHHHHHh-------CCCCCCCEEEeC-CHHHHHHHH-
Confidence 44444444444556666777665556664568999999999999999886 246899999995 333333333
Q ss_pred hcCCccc---eEEeeecccCCCCCeeEEEEe-ccccccC----------------------CCCceeEEEeee
Q 027466 156 KAGLTLP---LVAKPLVADGSAKSHELSLAY-DQYSLKK----------------------LEPPLVLQEFVN 202 (223)
Q Consensus 156 ~agl~fP---~I~KplvA~Gs~~SH~Maivf-~~~gL~~----------------------l~~P~VlQeFIN 202 (223)
+.+++| +.+||....|+. -.-++- +...+.. --+|+++|||..
T Consensus 139 -~~l~~~~~~~CvKP~~g~gg~---GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~llvMeyL~ 207 (329)
T PF15632_consen 139 -EELRFPGQPLCVKPAVGIGGR---GFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPLLVMEYLP 207 (329)
T ss_pred -HhcCCCCceEEEecccCCCcc---eEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCcEEecCCC
Confidence 346666 999999988874 334444 2233221 136899999974
No 69
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=92.08 E-value=0.49 Score=45.92 Aligned_cols=119 Identities=15% Similarity=0.178 Sum_probs=76.6
Q ss_pred HHHHHHHHhCCCeEEeCChh-hHHhhcCHHHHHHHHHhccccCCCCcccCCceE-EEccCCCCchHHHHhcCCccceEEe
Q 027466 89 QILEEYRQTHPEVTVLDPPY-AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL-VIERDASSIPDVVLKAGLTLPLVAK 166 (223)
Q Consensus 89 ~~lq~y~~~hP~v~VIDP~~-~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v-~i~~~~~~~~~~l~~agl~fP~I~K 166 (223)
..+.+-.+++- +..+=|.. +++.+-|..++-+.+.+. .+.+|+.. -.-.+.++..+..++.| ||+|+|
T Consensus 89 ~~fae~~~~~g-l~fiGP~~~~i~~mgdK~~ar~~~~~a-------GVP~vpgs~~~~~~~ee~~~~a~~iG--yPVivK 158 (449)
T COG0439 89 AAFAEACAEAG-LTFIGPSAEAIRRMGDKITARRLMAKA-------GVPVVPGSDGAVADNEEALAIAEEIG--YPVIVK 158 (449)
T ss_pred HHHHHHHHHcC-CeeeCcCHHHHHHhhhHHHHHHHHHHc-------CCCcCCCCCCCcCCHHHHHHHHHHcC--CCEEEE
Confidence 44555666654 88888765 455555888888877653 24444443 11112234445556666 999999
Q ss_pred eecccCCCCCeeEEEEeccccccC------------CCCc-eeEEEeeecCcEEEEEEEecceEEEEE
Q 027466 167 PLVADGSAKSHELSLAYDQYSLKK------------LEPP-LVLQEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 167 plvA~Gs~~SH~Maivf~~~gL~~------------l~~P-~VlQeFINH~gvlfKVYViG~~~~v~~ 221 (223)
|...-|+ --|-+|.+++.|.+ +..| +.+++||+.- .=.=+-|+||.+-.+|
T Consensus 159 a~~GgGg---~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~-rhievqv~gD~~g~~i 222 (449)
T COG0439 159 AAAGGGG---RGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGP-RHIEVQVLGDGHGNVI 222 (449)
T ss_pred ECCCCCc---ccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCC-ceEEEEEEEcCcccEE
Confidence 9876555 57999999988843 2345 9999999865 3334568888875554
No 70
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=90.69 E-value=0.25 Score=46.79 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=37.9
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCccceEEeeecccC--CCCCeeEEEEeccccccC----CC----------CceeE
Q 027466 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG--SAKSHELSLAYDQYSLKK----LE----------PPLVL 197 (223)
Q Consensus 134 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~G--s~~SH~Maivf~~~gL~~----l~----------~P~Vl 197 (223)
.+.+|+.+. ++ ..+.+|+|+||..|.| +..-+ ++.|.+.+.. +. ..+++
T Consensus 138 GI~~Pk~~~---~p---------~eId~PVIVKp~~asG~~srG~f---~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iI 202 (366)
T PRK13277 138 GIPYPKLFK---DP---------EEIDRPVIVKLPEAKRRLERGFF---TASSYEDFYEKSEELIKAGVIDREDLKNARI 202 (366)
T ss_pred CCCCceeec---Cc---------cccCccEEEEECCCCCccccCeE---eeCCHHHHHHHHHhhhhcCccccccccccee
Confidence 577888775 11 2578999999999999 65444 6777766532 11 35689
Q ss_pred EEeee
Q 027466 198 QEFVN 202 (223)
Q Consensus 198 QeFIN 202 (223)
||||.
T Consensus 203 QEyI~ 207 (366)
T PRK13277 203 EEYVI 207 (366)
T ss_pred EeccC
Confidence 99996
No 71
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=89.14 E-value=0.46 Score=41.25 Aligned_cols=90 Identities=11% Similarity=0.225 Sum_probs=55.8
Q ss_pred CHHHHHHHHHhccccCCCCcccCCceEEE-ccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccCC--
Q 027466 115 NRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-- 191 (223)
Q Consensus 115 dR~~~~~~l~~l~~~~~~~~i~~P~~v~i-~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l-- 191 (223)
||.+..+.+.++ .+.+|+.... -.+.++..+..+ ++.||+++||...-|. ..|.+++|++.|.+.
T Consensus 1 Dk~~~~~~~~~~-------gvp~~pg~~~~~~~~eea~~~a~--~iGyPVliKas~ggGG---~gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKL-------GVPVPPGSTVPISSVEEALEFAE--EIGYPVLIKASAGGGG---RGMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHT-------T-BBSSBESSSBSSHHHHHHHHH--HH-SSEEEEETTSSTT---TSEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHC-------CCCcCCCCCCCCCCHHHHHHHHH--hcCCceEEeecccccc---cccccccchhhhhhhhh
Confidence 566666776664 3455555543 112222222222 4689999999887665 579999999888532
Q ss_pred -----------CCceeEEEeeecCcEEEEEEEecceE
Q 027466 192 -----------EPPLVLQEFVNHGMQMAFGYLADIHY 217 (223)
Q Consensus 192 -----------~~P~VlQeFINH~gvlfKVYViG~~~ 217 (223)
..|+.+.+|+. |..=+-|=|++|.+
T Consensus 69 ~~~~~s~~~fg~~~v~iek~i~-~~reiEvqvi~D~~ 104 (211)
T PF02786_consen 69 RAQRESPAAFGDGPVLIEKFIE-GAREIEVQVIRDGK 104 (211)
T ss_dssp HHHHHHHHHHSTS-EEEEE--S-SEEEEEEEEEEETT
T ss_pred hccccCccccccceEEEeeehh-hhhhhhhhhhhccc
Confidence 56999999998 55667777787754
No 72
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=88.56 E-value=3.1 Score=40.03 Aligned_cols=99 Identities=15% Similarity=0.311 Sum_probs=65.4
Q ss_pred eEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEE
Q 027466 101 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELS 180 (223)
Q Consensus 101 v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Ma 180 (223)
=+|.=++++|+.--||....+.++++ .+.+|..+ .+ ..++..+.. ..+.||+|+||-..-|+..+ .
T Consensus 102 ~vvgs~~eaI~iaeDr~~fke~m~ei-------gi~~P~~~-~~-~~~e~~~~~--~~ig~PvIVrP~~~lGG~G~---~ 167 (400)
T COG0458 102 EVVGSDPEAIEIAEDKKLFKEAMREI-------GIPVPSRI-AH-SVEEADEIA--DEIGYPVIVKPSFGLGGSGG---G 167 (400)
T ss_pred EEEecCHHHhhhhhhHHHHHHHHHHc-------CCCCCccc-cc-cHHHHhhhH--hhcCCCEEEecCcCCCCCce---e
Confidence 35778999999999999999999986 36677332 21 111212222 24679999999888777554 6
Q ss_pred EEeccccccCC--------C-CceeEEEeeecCcEEEEEEEec
Q 027466 181 LAYDQYSLKKL--------E-PPLVLQEFVNHGMQMAFGYLAD 214 (223)
Q Consensus 181 ivf~~~gL~~l--------~-~P~VlQeFINH~gvlfKVYViG 214 (223)
+++|++.|..+ . .+|+++|+|- |...|..=|+-
T Consensus 168 i~~n~eel~~~~~~~l~~s~~~~vl~eesi~-G~ke~e~ev~r 209 (400)
T COG0458 168 IAYNEEELEEIIEEGLRASPVEEVLIEESII-GWKEFEYEVVR 209 (400)
T ss_pred EEeCHHHHHHHHHhccccCccccceeeeeec-CceEEEEEEEE
Confidence 88997766432 1 3677777765 45555555553
No 73
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=87.91 E-value=0.32 Score=41.16 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=42.5
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC----C-CCceeEEEeeecCcE
Q 027466 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----L-EPPLVLQEFVNHGMQ 206 (223)
Q Consensus 134 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~----l-~~P~VlQeFINH~gv 206 (223)
.+.+|+|..+++ .+++.+.+ ..+.||+|.|+... .-+-+.-.++.+++.+.+ + ..||++++||+...-
T Consensus 5 gip~~~~~~i~~-~~~l~~a~--~~iG~P~vlK~~~~--GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f~~E 77 (172)
T PF02222_consen 5 GIPTAPYATIDS-LEDLEEAA--ESIGFPAVLKTRRG--GYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPFDRE 77 (172)
T ss_dssp T--B-EEEEESS-HHHHHHHH--HHHTSSEEEEESSS--SCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---ESEE
T ss_pred CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEccCc--CcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCCcEE
Confidence 578999999963 22333333 24799999997543 334555668899888864 3 569999999998643
No 74
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=86.57 E-value=6.8 Score=37.23 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=92.1
Q ss_pred CCCcEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCCh----------HH-HHHHHHH
Q 027466 26 QSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK----------EW-RQILEEY 94 (223)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~----------~~-~~~lq~y 94 (223)
+.+.+++|. +.+.+...|.+.|+....++.=.|..-++..+.++--.+.. +| .+.++++
T Consensus 11 ~~kiLviGv----------ntR~vveSA~klGf~V~sv~~y~~~Dl~~~a~~~l~~r~~~~~~rfe~~de~~li~~~~~~ 80 (389)
T COG2232 11 SCKILVIGV----------NTRPVVESASKLGFEVYSVQYYDPADLPGDAISYLRERPGELLGRFENLDEQKLIEAAEDL 80 (389)
T ss_pred cceEEEEee----------cchHhHHHHHhcCeEEEEeEeecccccccccceEEEecChhhcCcccCCCHHHHHHHHHhh
Confidence 345677774 66678889999999999999988866677778877665543 33 3344444
Q ss_pred HHhCCCeEE---------------------eCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHH
Q 027466 95 RQTHPEVTV---------------------LDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDV 153 (223)
Q Consensus 95 ~~~hP~v~V---------------------IDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~ 153 (223)
..+. ++.+ -+|-..+..+-||...+..+..+.. ..|..-. ++.
T Consensus 81 ~~dv-D~~ii~~sg~e~l~~~g~~~~~v~~n~P~~~v~~~snk~~~~r~l~~lgm-------p~p~~~~--------~e~ 144 (389)
T COG2232 81 AEDV-DAPIIPFSGFEALRTSGELGCEVAGNEPEVKVVEASNKLKFYRKLEVLGM-------PEPSEKK--------IEP 144 (389)
T ss_pred hhhc-ceeeeeccccccccccCccccccccCCcHHHHHHHHHHHhhhhhhhhcCC-------CCChhhh--------hhh
Confidence 4332 2211 2454466667777777776665432 1121111 122
Q ss_pred HHhcCCccceEEeeecccCCCCCeeEEEEeccccccCCCCceeEEEeeecCcEEEEEEEecc
Q 027466 154 VLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 154 l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
+. --..|+|.||....|.. .=.+-|+++.- .+++++||||- |+=+-|-+|++
T Consensus 145 ~~--~gekt~IlKPv~GaGG~---~el~~~~Ee~~---~~~~i~Qefi~--G~p~Svs~is~ 196 (389)
T COG2232 145 LE--EGEKTLILKPVSGAGGL---VELVKFDEEDP---PPGFIFQEFIE--GRPVSVSFISN 196 (389)
T ss_pred hh--hcceeeEEeeccCCCce---eeecccccccC---CcceehhhhcC--CceeEEEEEec
Confidence 22 12568999999988874 22222333322 37899999995 44455555544
No 75
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=86.51 E-value=0.3 Score=41.46 Aligned_cols=61 Identities=30% Similarity=0.433 Sum_probs=32.3
Q ss_pred CCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEecccccc--------CCCCceeEEEeeec
Q 027466 137 VPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK--------KLEPPLVLQEFVNH 203 (223)
Q Consensus 137 ~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~--------~l~~P~VlQeFINH 203 (223)
+|..++-. +.+.+.+.+++.|- +|+||+.+.|...-+++.- +...++ .-..|+++|+|+.-
T Consensus 12 ~P~T~vs~-~~~~i~~f~~~~~~---~VlKPl~g~gG~gV~~i~~--~~~n~~~i~e~~~~~~~~~~mvQ~flp~ 80 (173)
T PF02955_consen 12 IPPTLVSR-DKEEIRAFIEEHGD---IVLKPLDGMGGRGVFRISR--DDPNLNSILETLTKNGERPVMVQPFLPE 80 (173)
T ss_dssp S--EEEES--HHHHHHHHHHHSS---EEEEESS--TTTT-EEE-T--T-TTHHHHHHHHTTTTTS-EEEEE--GG
T ss_pred CcCEEEEC-CHHHHHHHHHHCCC---EEEEECCCCCCcCEEEEcC--CCCCHHHHHHHHHhcCCccEEEEecccc
Confidence 37666653 44555566666654 9999999999877776654 222222 12458999999874
No 76
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=83.75 E-value=15 Score=34.24 Aligned_cols=99 Identities=10% Similarity=0.050 Sum_probs=54.5
Q ss_pred hhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCcc-ceEEeeecccCCCCCeeEEEEeccc----
Q 027466 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSAKSHELSLAYDQY---- 186 (223)
Q Consensus 112 ~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~f-P~I~KplvA~Gs~~SH~Maivf~~~---- 186 (223)
.+-|...+...+++ ..+.+|+.+++.+...+ .+.+.+.--.+ |+|+||+..++-.. +.++-+.+
T Consensus 34 ~~~DK~~t~~lL~~-------aglpvP~T~~~~s~~~~-~~~l~~~~~~~~~VVVKPl~Gs~GrG---I~~i~~~~~~~~ 102 (317)
T TIGR02291 34 LVDDKLKTKIIAQA-------AGITVPELYGVIHNQAE-VKTIHNIVKDHPDFVIKPAQGSGGKG---ILVITSRKDGRY 102 (317)
T ss_pred ccccHHHHHHHHHH-------cCCCCCCEEEecCchhh-HHHHHHHHccCCCEEEEECCCCCccC---eEEEEecccccc
Confidence 33444455444443 35889998877533222 22222221245 69999998766544 34443322
Q ss_pred ----------------------cccCCCCc--eeEEEee--ecCc---------EEEEEEEecceEEEEE
Q 027466 187 ----------------------SLKKLEPP--LVLQEFV--NHGM---------QMAFGYLADIHYIIFI 221 (223)
Q Consensus 187 ----------------------gL~~l~~P--~VlQeFI--NH~g---------vlfKVYViG~~~~v~~ 221 (223)
+|-.+..+ ..+|||+ .|.. -=..|+|+|+.....|
T Consensus 103 ~~~~~~~~~~~~l~~~~~~~~~~ly~l~~~~~~~lvE~~i~~~~~~~~~~~~~v~diRV~vv~~~~vaa~ 172 (317)
T TIGR02291 103 RKPSGATINKEEIERHVSNILAGLYSLGGKNDVALIEYRVKFDPCFDGFSYEGVPDIRIIVFKGYPVMAM 172 (317)
T ss_pred ccccccccchHHHHHHHHHHHHHHHhccCCCcEEEEEeeccCCcchhccccCCCCCEEEEEECCEEEEEE
Confidence 12122222 5677887 4421 2478999999876554
No 77
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=80.87 E-value=1.5 Score=41.02 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=47.9
Q ss_pred CcccCCceEEEccCCCCchHHHHhcCCc-cceEEeeecccC-CCCCeeEEEEeccccccC-----CC-------------
Q 027466 133 GKVDVPRQLVIERDASSIPDVVLKAGLT-LPLVAKPLVADG-SAKSHELSLAYDQYSLKK-----LE------------- 192 (223)
Q Consensus 133 ~~i~~P~~v~i~~~~~~~~~~l~~agl~-fP~I~KplvA~G-s~~SH~Maivf~~~gL~~-----l~------------- 192 (223)
..|.+|++.++++ .++..+... .+. ||+++||.+-.| ..++--..++.+++.+.+ +.
T Consensus 15 ~GIpvp~~~~~~~-~~ea~~~~~--~ig~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~ 91 (386)
T TIGR01016 15 YGIPVPRGYVATS-VEEAEEIAA--KLGAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQ 91 (386)
T ss_pred cCCCCCCceeeCC-HHHHHHHHH--HhCCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCC
Confidence 3688999988852 223222222 356 999999985444 334447777766655421 11
Q ss_pred --CceeEEEeeecCcEEEEEEEecc
Q 027466 193 --PPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 193 --~P~VlQeFINH~gvlfKVYViG~ 215 (223)
..+++|+|++|+--+| |=+++|
T Consensus 92 ~~~~vlVEe~v~~g~E~~-v~i~~d 115 (386)
T TIGR01016 92 PVNKILIEEATDIDKEYY-LSIVID 115 (386)
T ss_pred EeeEEEEEECccCCceEE-EEEEEc
Confidence 1499999999875544 334444
No 78
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=79.14 E-value=1.6 Score=41.09 Aligned_cols=87 Identities=18% Similarity=0.390 Sum_probs=47.8
Q ss_pred hhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCC-CCCeeEEE-Eecc
Q 027466 108 YAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGS-AKSHELSL-AYDQ 185 (223)
Q Consensus 108 ~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs-~~SH~Mai-vf~~ 185 (223)
...+-|.+.-.+|+.-+++ .+..|+-+.+++..+ .+ -..|+||+|.||=..-|. ..+..=++ +-+.
T Consensus 107 ~~l~wlceKPllY~ra~el-------gl~~P~Ty~v~S~~d----~~-~~el~FPvILKP~mgg~~~~~araKa~~a~d~ 174 (415)
T COG3919 107 ALLRWLCEKPLLYNRAEEL-------GLPYPKTYLVNSEID----TL-VDELTFPVILKPGMGGSVHFEARAKAFTAADN 174 (415)
T ss_pred HHHHHHhhCcHHHHHHHHh-------CCCCcceEEecchhh----hh-hhheeeeEEecCCCCCcceeehhhheeeccCH
Confidence 3444444444555554443 367899999974321 11 246899999999776442 11111111 2222
Q ss_pred cccc--------CCCC-ceeEEEeeecCcE
Q 027466 186 YSLK--------KLEP-PLVLQEFVNHGMQ 206 (223)
Q Consensus 186 ~gL~--------~l~~-P~VlQeFINH~gv 206 (223)
+.++ +.-| -+|+||||.-||-
T Consensus 175 ee~k~a~~~a~eeigpDnvvvQe~IPGGgE 204 (415)
T COG3919 175 EEMKLALHRAYEEIGPDNVVVQEFIPGGGE 204 (415)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecCCCCc
Confidence 2221 1122 5999999998763
No 79
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=74.37 E-value=3.3 Score=38.70 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=45.8
Q ss_pred CcccCCceEEEccCCCCchHHHHhcCC-ccceEEeeecc-cCCCCCeeEEEEeccccccC---------C-------C-C
Q 027466 133 GKVDVPRQLVIERDASSIPDVVLKAGL-TLPLVAKPLVA-DGSAKSHELSLAYDQYSLKK---------L-------E-P 193 (223)
Q Consensus 133 ~~i~~P~~v~i~~~~~~~~~~l~~agl-~fP~I~KplvA-~Gs~~SH~Maivf~~~gL~~---------l-------~-~ 193 (223)
..|.+|++.++++ .++..+... .+ .||+++||..- .|.++++-..+..+++.+.+ + . .
T Consensus 15 ~gIpvp~~~~~~~-~~ea~~~a~--~i~g~PvVvK~~~~~ggk~~~GGV~l~~~~~e~~~a~~~i~~~~~~~~~~~~~g~ 91 (388)
T PRK00696 15 YGVPVPRGIVATT-PEEAVEAAE--ELGGGVWVVKAQVHAGGRGKAGGVKLAKSPEEAREFAKQILGMTLVTHQTGPKGQ 91 (388)
T ss_pred cCCCCCCCeeeCC-HHHHHHHHH--HcCCCcEEEEEeeCCCCCcccccEEEcCCHHHHHHHHHHhhccceeeeccCCCCC
Confidence 3688999988852 223222222 36 89999999853 44567777777766554421 1 0 1
Q ss_pred ---ceeEEEeeecCcEEE
Q 027466 194 ---PLVLQEFVNHGMQMA 208 (223)
Q Consensus 194 ---P~VlQeFINH~gvlf 208 (223)
.+++|+|+.|+--+|
T Consensus 92 ~~~gvlVe~~~~~~~E~~ 109 (388)
T PRK00696 92 PVNKVLVEEGADIAKEYY 109 (388)
T ss_pred EEeEEEEEeccCCCceEE
Confidence 289999999864443
No 80
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=74.33 E-value=10 Score=35.97 Aligned_cols=141 Identities=18% Similarity=0.267 Sum_probs=83.4
Q ss_pred HHhHHHhcCcEEEEeeCCCCCCC-C-CCeeEEEeccCChHH--------------------HHHHHHHHHhCCCeEEeCC
Q 027466 49 LEGLARNKGILFVAIDQNRPLSD-Q-GPFDIVLHKLTGKEW--------------------RQILEEYRQTHPEVTVLDP 106 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~pl~~-Q-gpfDvILHKltd~~~--------------------~~~lq~y~~~hP~v~VIDP 106 (223)
+.--|..-|++.+.+|-=..-.. | --...++--+..+.+ .+.|.++.+. ...||=-
T Consensus 27 vaIe~QRLG~eViAVDrY~~APAmqVAhrs~Vi~MlD~~al~avv~rekPd~IVpEiEAI~td~L~elE~~--G~~VVP~ 104 (394)
T COG0027 27 VAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVIDMLDGDALRAVVEREKPDYIVPEIEAIATDALVELEEE--GYTVVPN 104 (394)
T ss_pred HHHHHHhcCCEEEEecCcCCChhhhhhhheeeeeccCHHHHHHHHHhhCCCeeeehhhhhhHHHHHHHHhC--CceEccc
Confidence 44455667999999996322111 1 122233333332221 2334444443 3446666
Q ss_pred hhhHHhhcCHHHHHHHHHh-ccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEecc
Q 027466 107 PYAIQHLHNRQSMLQCVAD-MNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (223)
Q Consensus 107 ~~~i~~L~dR~~~~~~l~~-l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~ 185 (223)
-.+.+.-+||..+-+...+ | .+.|-++...++ .+++.+.. ..+-||+++||+.. +.-|-=+++-++
T Consensus 105 ArAt~ltMnRegiRrlAAeeL-------glpTs~Y~fa~s-~~e~~~a~--~~iGfPcvvKPvMS---SSGkGqsvv~~~ 171 (394)
T COG0027 105 ARATKLTMNREGIRRLAAEEL-------GLPTSKYRFADS-LEELRAAV--EKIGFPCVVKPVMS---SSGKGQSVVRSP 171 (394)
T ss_pred hHHHHhhhcHHHHHHHHHHHh-------CCCCcccccccc-HHHHHHHH--HHcCCCeecccccc---cCCCCceeecCH
Confidence 7778888999876554332 3 344555665532 12333333 35889999999984 456777889888
Q ss_pred ccccC-----------CCCceeEEEeeecC
Q 027466 186 YSLKK-----------LEPPLVLQEFVNHG 204 (223)
Q Consensus 186 ~gL~~-----------l~~P~VlQeFINH~ 204 (223)
+.+.+ -..-+++-+||+-+
T Consensus 172 e~ve~AW~~A~~g~R~~~~RVIVE~fv~fd 201 (394)
T COG0027 172 EDVEKAWEYAQQGGRGGSGRVIVEEFVKFD 201 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEecce
Confidence 87743 24578999999876
No 81
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=72.63 E-value=22 Score=32.79 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=27.7
Q ss_pred eEEeeecccCCCCCeeEEEEeccccccCCCCceeEEEeeec--CcEEEEEEEecceEE
Q 027466 163 LVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNH--GMQMAFGYLADIHYI 218 (223)
Q Consensus 163 ~I~KplvA~Gs~~SH~Maivf~~~gL~~l~~P~VlQeFINH--~gvlfKVYViG~~~~ 218 (223)
.|.||.-+||... +-|. .+..++ +++||||.- -+|. ..+|+++.
T Consensus 141 ~ViKp~dgCgge~-----i~~~-~~~pd~---~i~qEfIeG~~lSVS---L~~GEkv~ 186 (307)
T COG1821 141 YVIKPADGCGGEG-----ILFG-RDFPDI---EIAQEFIEGEHLSVS---LSVGEKVL 186 (307)
T ss_pred EEecccccCCcce-----eecc-CCCcch---hhHHHhcCCcceEEE---EecCCccc
Confidence 6899999999842 2222 222233 999999963 3444 45676654
No 82
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=69.87 E-value=69 Score=29.64 Aligned_cols=157 Identities=17% Similarity=0.090 Sum_probs=99.9
Q ss_pred HHhHHHhcCcEEEEeeCCCCCC---CC-------CCeeEEEeccCChH-HHHHHHHHHHhCCCeEEeCChhhHHhhcCHH
Q 027466 49 LEGLARNKGILFVAIDQNRPLS---DQ-------GPFDIVLHKLTGKE-WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQ 117 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~pl~---~Q-------gpfDvILHKltd~~-~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~ 117 (223)
+...-+..|.+..++|.+.... .+ ..+|+++-.+.+.. -...+|.|.+..-=-.|.=|..+-.--+|..
T Consensus 26 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvfp~lhG~~gEDg~iqg~le~~giPyvg~gv~~Sa~~mdk~ 105 (317)
T COG1181 26 VLRALKGFGYDVTPVDITEAGLWMLDKEVTKRVLQKADVVFPVLHGPYGEDGTIQGLLELLGIPYVGKGVLASAGAMDKI 105 (317)
T ss_pred HHHHHhhcCceeEEEeccccceEEeccccchhhcccCCEEEEeCCCCCCCCchHHHHHHHhCCCEecCchhhhhhcccHH
Confidence 3333344788889999887632 12 46777665555441 1234666666654345666666666666655
Q ss_pred HHHHHHHhccccCCCCcccCCceEEEccCC-CCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC------
Q 027466 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK------ 190 (223)
Q Consensus 118 ~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~-~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~------ 190 (223)
.+-..... ..+.++.++.++.+. .+..-.-...|+.||+++||-.. || |=.+..+.+.+.+..
T Consensus 106 ~~K~~~~~-------~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~p~~Vkp~~~-gS--Svg~~~v~~~~d~~~~~e~a~ 175 (317)
T COG1181 106 VTKRLFKA-------EGLPVAPYVALTRDEYSSVIVEEVEEGLGFPLFVKPARE-GS--SVGRSPVNVEGDLQSALELAF 175 (317)
T ss_pred HHHHHHHH-------CCCCccceeeeecccchhHHHHHhhcccCCCEEEEcCCc-cc--eeeEEEeeeccchHHHHHHHH
Confidence 44443332 246778888886442 23322334579999999999764 33 566777888777653
Q ss_pred -CCCceeEEEeeecCcEEEEEEEecceE
Q 027466 191 -LEPPLVLQEFVNHGMQMAFGYLADIHY 217 (223)
Q Consensus 191 -l~~P~VlQeFINH~gvlfKVYViG~~~ 217 (223)
.+...++++|++ +.=..|=++|+..
T Consensus 176 ~~d~~vl~e~~~~--~rei~v~vl~~~~ 201 (317)
T COG1181 176 KYDRDVLREQGIT--GREIEVGVLGNDY 201 (317)
T ss_pred HhCCceeeccCCC--cceEEEEecCCcc
Confidence 256899999999 7777888888744
No 83
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=56.90 E-value=43 Score=31.60 Aligned_cols=97 Identities=16% Similarity=0.263 Sum_probs=55.2
Q ss_pred HHHHHhhHhhh---ccCCcccCCCCcEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCC----CCCCCCeeEEE
Q 027466 7 EIEEQTREEEL---LSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRP----LSDQGPFDIVL 79 (223)
Q Consensus 7 ~~~~~~~~~~~---~~~~~~~~~~~~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~p----l~~QgpfDvIL 79 (223)
++-.|.+-+|+ .|.|+.+..+. -++-++=+..-+..+...-..+--+..|=.++.+|=+.- +..+-.|.
T Consensus 92 ~~~~~~E~aela~~lS~p~e~e~s~-pii~fed~~~~~~~m~n~~~~n~~~~s~qk~~~~dGs~g~kYyIPpkSsF~--- 167 (366)
T KOG2356|consen 92 NNLKSREAAELALNLSIPSESESSE-PIIEFEDSESLSNLMSNGMINNWVRCSGQKPGIIDGSDGTKYYIPPKSSFH--- 167 (366)
T ss_pred hhhhHHHhhHHHHhcCCcccccccc-cceeehhhcchHHHHHhHhhhhhhcccccceeEeeCCCcceEEeCCcccee---
Confidence 44456666776 77777664432 233344333333333211111223445666777776443 22333333
Q ss_pred eccCChHHHHHHHHHHHhCCCeEEeCChhh
Q 027466 80 HKLTGKEWRQILEEYRQTHPEVTVLDPPYA 109 (223)
Q Consensus 80 HKltd~~~~~~lq~y~~~hP~v~VIDP~~~ 109 (223)
+.|..-++++-++.+..|+++|||||=-
T Consensus 168 --~gDv~~~~qll~~H~llpdlIIiDPPW~ 195 (366)
T KOG2356|consen 168 --VGDVKDIEQLLRAHDLLPDLIIIDPPWF 195 (366)
T ss_pred --cccHHHHHHHhHHHhhcCCeEEeCCCCC
Confidence 2456667788899999999999999843
No 84
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.98 E-value=13 Score=36.26 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=26.5
Q ss_pred eccccccCCCCceeEEEeeecCcEEEEEEEecc
Q 027466 183 YDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 183 f~~~gL~~l~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
|.+.|+.++.|||.+|.=|.-|+.|||.=--|+
T Consensus 257 y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGE 289 (545)
T KOG0555|consen 257 YFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGE 289 (545)
T ss_pred HHhcCceecCCCceEEEEecCcceEEeecccCc
Confidence 445666778999999999999999999744443
No 85
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=46.75 E-value=78 Score=28.59 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=47.2
Q ss_pred CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCc-------eEEEccCC---CCchHHHHhcCCccceEEeeecccCCC
Q 027466 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-------QLVIERDA---SSIPDVVLKAGLTLPLVAKPLVADGSA 174 (223)
Q Consensus 105 DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~-------~v~i~~~~---~~~~~~l~~agl~fP~I~KplvA~Gs~ 174 (223)
+|......+-|...+.+.+.+. .+.+|+ .+...... +++.+.+ ......++++||....|..
T Consensus 16 N~~~~~~l~~DK~~~~~l~~~~-------gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~viKP~~G~~G~ 87 (285)
T PF14397_consen 16 NPREYYPLLDDKLLFKQLFRDY-------GIPVPEAIFNVGRDYFDLREQHSIEDLEEFL-RKHAPDRFVIKPANGSGGK 87 (285)
T ss_pred CchhhccccCCHHHHHHHHHHh-------cCCCCceEEeccceEEecccccCHHHHHHHH-HhccCCcEEEEeCCCCCcc
Confidence 5566666777777777776654 344555 22221111 1222223 2223589999997655544
Q ss_pred CCeeEEEEecccc---------c----cCCC-CceeEEEeeecC
Q 027466 175 KSHELSLAYDQYS---------L----KKLE-PPLVLQEFVNHG 204 (223)
Q Consensus 175 ~SH~Maivf~~~g---------L----~~l~-~P~VlQeFINH~ 204 (223)
.. .++...+| + ..+. .-+++||+|.=.
T Consensus 88 Gi---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~liqe~i~qh 128 (285)
T PF14397_consen 88 GI---LVIDRRDGSEINRDISALYAGLESLGGKDYLIQERIEQH 128 (285)
T ss_pred CE---EEEEeecCcccccchhHHHHHHHhcCCccEEEEecccCC
Confidence 43 33333321 1 1122 279999998644
No 86
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=46.21 E-value=30 Score=33.08 Aligned_cols=60 Identities=22% Similarity=0.444 Sum_probs=36.0
Q ss_pred hhhccchhhHHhHHHhcCcEEEEeeCCCCCCCCC--CeeEEEeccCCh---HHHHHHHHHHHhCCCeEE
Q 027466 40 KTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQG--PFDIVLHKLTGK---EWRQILEEYRQTHPEVTV 103 (223)
Q Consensus 40 K~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~Qg--pfDvILHKltd~---~~~~~lq~y~~~hP~v~V 103 (223)
...++....+.++.++.|++++++|+++.+.+-+ ..+ ..... -.-+.+++-.++||++++
T Consensus 166 ev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~----~~~~~~~~~~y~l~~~L~~~~P~v~i 230 (394)
T PF02065_consen 166 EVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLP----EGYHRYVLGLYRLLDRLRARFPDVLI 230 (394)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-----GHHHHHHHHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCch----HHHHHHHHHHHHHHHHHHHhCCCcEE
Confidence 3455555567778889999999999999887643 112 11110 112456777889999876
No 87
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=43.63 E-value=17 Score=32.15 Aligned_cols=64 Identities=13% Similarity=0.218 Sum_probs=25.7
Q ss_pred cCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC----CCCceeEEEeeec
Q 027466 136 DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK----LEPPLVLQEFVNH 203 (223)
Q Consensus 136 ~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~----l~~P~VlQeFINH 203 (223)
..|+...+..+..++..... .+-.-.||+||-..++ ...+.|+-+.+.+.+ ...+.|+|+||.-
T Consensus 42 ~~p~t~~l~~~~~~~~~~~~-~~~~~~wI~KP~~~~r---G~GI~l~~~~~~i~~~~~~~~~~~vvQkYI~~ 109 (292)
T PF03133_consen 42 FYPETFILPQDYKEFLKYFE-KNPKNLWIVKPSNGSR---GRGIKLFNNLEQILRFSKNKNQPYVVQKYIEN 109 (292)
T ss_dssp -------HHHHHHHHHHHHH-TTS---EEEEES----------EEEES-HHHHHCCHCCTTS-EEEEE--SS
T ss_pred CCcceEecHHHHHHHHHHHh-cCCCCEEEEeccccCC---CCCceecCCHHHHHHHhhhhhhhhhhhhccCC
Confidence 45666666433222222222 2223569999987543 446667766666664 4579999999974
No 88
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=43.16 E-value=56 Score=25.42 Aligned_cols=45 Identities=29% Similarity=0.384 Sum_probs=28.9
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCCh-HHHHHHHHHHHh
Q 027466 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK-EWRQILEEYRQT 97 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~-~~~~~lq~y~~~ 97 (223)
.|.+|.+..||+ +.+.. +++|.|++.||.=.+. ...+++++|.+.
T Consensus 15 aF~DYl~sqgI~-~~i~~----~~~~~~~lwl~de~~~~~a~~el~~Fl~n 60 (101)
T PF12122_consen 15 AFIDYLASQGIE-LQIEP----EGQGQFALWLHDEEHLEQAEQELEEFLQN 60 (101)
T ss_dssp HHHHHHHHTT---EEEE-----SSSE--EEEES-GGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCe-EEEEE----CCCCceEEEEeCHHHHHHHHHHHHHHHHC
Confidence 588999999987 44444 6677899999944443 457778888764
No 89
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=42.84 E-value=26 Score=28.49 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHh--CCCeEEeCChhhHHhh
Q 027466 86 EWRQILEEYRQT--HPEVTVLDPPYAIQHL 113 (223)
Q Consensus 86 ~~~~~lq~y~~~--hP~v~VIDP~~~i~~L 113 (223)
...+++.++.++ .|+++||||+.++..-
T Consensus 127 ~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 127 EDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 456778888776 4899999999999885
No 90
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=41.94 E-value=52 Score=28.25 Aligned_cols=81 Identities=12% Similarity=0.068 Sum_probs=40.3
Q ss_pred CCcEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCCCC--CCCCeeEEEec-cCChHHHHHHHHHH-HhCCCeE
Q 027466 27 SKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLS--DQGPFDIVLHK-LTGKEWRQILEEYR-QTHPEVT 102 (223)
Q Consensus 27 ~~~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~--~QgpfDvILHK-ltd~~~~~~lq~y~-~~hP~v~ 102 (223)
.+...|-|+-.|-....+. +.+..++...|.. +++-..... ...++...-=+ .....+.+.+.+.. ...|+++
T Consensus 39 ~~~~~Vlyi~~Ed~~~~i~-~Rl~~i~~~~~~~--~~~~rl~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lv 115 (239)
T cd01125 39 TEPGRVVYLSAEDPREEIH-RRLEAILQHLEPD--DAGDRLFIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLV 115 (239)
T ss_pred CCCceEEEEECCCCHHHHH-HHHHHHHhhcCCc--CcccceEEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEE
Confidence 3567788888887665543 4566665544321 000000000 01122211100 11233444444443 5689999
Q ss_pred EeCChhhH
Q 027466 103 VLDPPYAI 110 (223)
Q Consensus 103 VIDP~~~i 110 (223)
||||+.++
T Consensus 116 viDpl~~~ 123 (239)
T cd01125 116 VIDPLVSF 123 (239)
T ss_pred EECChHHh
Confidence 99999876
No 91
>PF14972 Mito_morph_reg: Mitochondrial morphogenesis regulator
Probab=37.09 E-value=52 Score=28.09 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=28.1
Q ss_pred eEEEeccCCh-----HHHHHHHHHHHhCCCeEEeCChh
Q 027466 76 DIVLHKLTGK-----EWRQILEEYRQTHPEVTVLDPPY 108 (223)
Q Consensus 76 DvILHKltd~-----~~~~~lq~y~~~hP~v~VIDP~~ 108 (223)
-+|||-++|- .+..+|++..++..+++||+|..
T Consensus 4 ~~vI~evYd~ena~e~FE~eLe~ALe~~~~~IVIEP~~ 41 (165)
T PF14972_consen 4 CAVIREVYDGENAHEQFEAELERALEAKVSYIVIEPTR 41 (165)
T ss_pred EEEEehHhcCcchHHHHHHHHHHHHHhCCCEEEECCcc
Confidence 3689999984 46788999999999999999973
No 92
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=35.91 E-value=83 Score=26.77 Aligned_cols=40 Identities=10% Similarity=0.316 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHh-CCCeEEeCChhhHHhhcCHHHHHHHHHh
Q 027466 86 EWRQILEEYRQT-HPEVTVLDPPYAIQHLHNRQSMLQCVAD 125 (223)
Q Consensus 86 ~~~~~lq~y~~~-hP~v~VIDP~~~i~~L~dR~~~~~~l~~ 125 (223)
...+.+.+.+++ .|+++|||++.+.....++..+.+.+..
T Consensus 107 ~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~ 147 (234)
T PRK06067 107 KLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTE 147 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHH
Confidence 344556566654 8899999999988776777655555443
No 93
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=34.43 E-value=33 Score=31.81 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=45.6
Q ss_pred HHhhHhhhccCCcccC--CC-CcEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCCCCCC-----------CCe
Q 027466 10 EQTREEELLSFPQTQQ--QS-KLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQ-----------GPF 75 (223)
Q Consensus 10 ~~~~~~~~~~~~~~~~--~~-~~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~Q-----------gpf 75 (223)
+|++++|+...|...+ .. ....|=|--+ .+|-.++..-...++||+|.+-|.+.|..+| |.+
T Consensus 3 ~a~k~~ea~~~~~~~~ka~~~~e~~vLyhhp----ysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gev 78 (325)
T KOG4420|consen 3 DAAKPAEAPDAPEAASKAHWPRESLVLYHHP----YSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEV 78 (325)
T ss_pred ccccccccCCCchhhcCCCCchhcceeeecC----cccccceeeeehhhcccccceeeccCccccccCchheecCCCCCC
Confidence 5788888887776542 11 1124444333 2444445444558899999999999998876 678
Q ss_pred eEEEecc
Q 027466 76 DIVLHKL 82 (223)
Q Consensus 76 DvILHKl 82 (223)
-|++|--
T Consensus 79 PVl~~g~ 85 (325)
T KOG4420|consen 79 PVLIHGD 85 (325)
T ss_pred ceEecCC
Confidence 8888853
No 94
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=33.08 E-value=1.3e+02 Score=25.10 Aligned_cols=63 Identities=13% Similarity=0.130 Sum_probs=37.0
Q ss_pred EEEEeChhhhh--ccchhhHHhHHHhcCcEEEEe-eCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChh
Q 027466 32 VGYALTSKKTK--SFLQPKLEGLARNKGILFVAI-DQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY 108 (223)
Q Consensus 32 VGy~l~~kK~~--~f~~~~~~~~~~~~gi~fv~i-D~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ 108 (223)
||+.++...-. .-.+.++...|++.|+.+.-+ |-..+ .....+.+++.++++|+.+++.|.+
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~d---------------~~~q~~~i~~~i~~~~d~Iiv~~~~ 65 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIVFDAQND---------------PEEQIEQIEQAISQGVDGIIVSPVD 65 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEEEESTTT---------------HHHHHHHHHHHHHTTESEEEEESSS
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCC---------------HHHHHHHHHHHHHhcCCEEEecCCC
Confidence 45555554433 112346778899999998886 43322 2344556666666666666666554
Q ss_pred h
Q 027466 109 A 109 (223)
Q Consensus 109 ~ 109 (223)
.
T Consensus 66 ~ 66 (257)
T PF13407_consen 66 P 66 (257)
T ss_dssp T
T ss_pred H
Confidence 3
No 95
>KOG2158 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.22 E-value=20 Score=35.51 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=40.7
Q ss_pred ccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccCCCCceeEEEee-------ecCcEE
Q 027466 135 VDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFV-------NHGMQM 207 (223)
Q Consensus 135 i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l~~P~VlQeFI-------NH~gvl 207 (223)
-+=|+.|....+-.++++.... .+=|+||||.-.| .+--.+++.+..-....+. .++|||| ||=-..
T Consensus 203 ~fyp~sw~lPa~l~df~a~~~~--~KrtfivkpDsga---qg~giylisDir~~g~~Q~-~~vQeyV~~pLli~dkyKfd 276 (565)
T KOG2158|consen 203 MFYPTSWRLPAPLCDFPASTEI--MKRTFIVKPDSGA---QGSGIYLISDIREKGEYQN-KKVQEYVTYPLLISDKYKFD 276 (565)
T ss_pred cCCCccccCchHHHHHHHHHHH--hcccEEECCCCCC---CCcceeeechhhhhhHHHH-HHHHHHhcccccccccceee
Confidence 3457777764333344443322 2339999997543 3334556633322222222 7788887 555666
Q ss_pred EEEEEec
Q 027466 208 AFGYLAD 214 (223)
Q Consensus 208 fKVYViG 214 (223)
+.||++=
T Consensus 277 ~rvy~li 283 (565)
T KOG2158|consen 277 QRVYSLI 283 (565)
T ss_pred eeeeeee
Confidence 7777763
No 96
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=30.69 E-value=87 Score=27.05 Aligned_cols=28 Identities=4% Similarity=-0.113 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHh-CCCeEEeCChhhHHhh
Q 027466 86 EWRQILEEYRQT-HPEVTVLDPPYAIQHL 113 (223)
Q Consensus 86 ~~~~~lq~y~~~-hP~v~VIDP~~~i~~L 113 (223)
...+.++++..+ .|+++|||++..+...
T Consensus 127 ~i~~~i~~~~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 127 SVLEKVRYMAVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHHHHhcCCceEEEECCHHHHhcc
Confidence 345667777665 4899999999998755
No 97
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.27 E-value=2.2e+02 Score=21.94 Aligned_cols=78 Identities=12% Similarity=0.130 Sum_probs=46.6
Q ss_pred ccchhhHHhHHHhcCcEEEEeeCCCCCC----CCCCeeEEEeccCChHHHHHHHHHHHh-CCCeEEeCChhhHHhhcCHH
Q 027466 43 SFLQPKLEGLARNKGILFVAIDQNRPLS----DQGPFDIVLHKLTGKEWRQILEEYRQT-HPEVTVLDPPYAIQHLHNRQ 117 (223)
Q Consensus 43 ~f~~~~~~~~~~~~gi~fv~iD~~~pl~----~QgpfDvILHKltd~~~~~~lq~y~~~-hP~v~VIDP~~~i~~L~dR~ 117 (223)
++.-.++.++|+++|+++ .+.- .+.. ....+|+||-=-.-.-..+.+++..+. +-.|.+|||-+-....+|=.
T Consensus 14 s~la~km~~~a~~~gi~~-~i~a-~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg~~~~dg~ 91 (99)
T cd05565 14 GLLANALNKGAKERGVPL-EAAA-GAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYIELTRDPD 91 (99)
T ss_pred HHHHHHHHHHHHHCCCcE-EEEE-eeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHhHHhCCHH
Confidence 344556777899999873 2332 1222 235789988522222234556655543 56899999987665577766
Q ss_pred HHHHH
Q 027466 118 SMLQC 122 (223)
Q Consensus 118 ~~~~~ 122 (223)
..++.
T Consensus 92 ~vl~~ 96 (99)
T cd05565 92 GALKF 96 (99)
T ss_pred HHHHH
Confidence 55553
No 98
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=29.55 E-value=98 Score=25.61 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=18.9
Q ss_pred HHHHHHHHHHh-CCCeEEeCChhhHHh
Q 027466 87 WRQILEEYRQT-HPEVTVLDPPYAIQH 112 (223)
Q Consensus 87 ~~~~lq~y~~~-hP~v~VIDP~~~i~~ 112 (223)
+.+.+.++.++ .|+++|||++.++..
T Consensus 85 ~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 85 AIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 35555566555 589999999998753
No 99
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=29.35 E-value=48 Score=28.73 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=20.6
Q ss_pred CcEEEEeeCCCCCCCCCCeeEEEecc
Q 027466 57 GILFVAIDQNRPLSDQGPFDIVLHKL 82 (223)
Q Consensus 57 gi~fv~iD~~~pl~~QgpfDvILHKl 82 (223)
++.++.-|-...+++++|||.|+==.
T Consensus 124 nv~~~~gdg~~g~~~~apfD~I~v~~ 149 (209)
T PF01135_consen 124 NVEVVVGDGSEGWPEEAPFDRIIVTA 149 (209)
T ss_dssp SEEEEES-GGGTTGGG-SEEEEEESS
T ss_pred ceeEEEcchhhccccCCCcCEEEEee
Confidence 78999999998888999999998543
No 100
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=29.28 E-value=2.3e+02 Score=24.64 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=44.5
Q ss_pred CCCCcEEEEEEeChhhhhccc---hhhHHhHHHhcCcEEEEeeCCCCCCC---------CCCeeEEEeccCChHHHHHHH
Q 027466 25 QQSKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQILE 92 (223)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f~---~~~~~~~~~~~gi~fv~iD~~~pl~~---------QgpfDvILHKltd~~~~~~lq 92 (223)
...+..+||..++.-. ..|. ..++...|+++|+.++-.+...+.+. ++.+|.||=--.+......++
T Consensus 57 ~~~~~~~Igvv~~~~~-~~~~~~l~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 135 (328)
T PRK11303 57 RAGRTRSIGLIIPDLE-NTSYARIAKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQ 135 (328)
T ss_pred hcCCCceEEEEeCCCC-CchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHH
Confidence 3455689999986421 2221 22455678889999887665433221 246787764222111122344
Q ss_pred HHHHhCCCeEEeCC
Q 027466 93 EYRQTHPEVTVLDP 106 (223)
Q Consensus 93 ~y~~~hP~v~VIDP 106 (223)
++.+..=+++++|.
T Consensus 136 ~l~~~~iPvV~v~~ 149 (328)
T PRK11303 136 RLQNDGLPIIALDR 149 (328)
T ss_pred HHHhcCCCEEEECC
Confidence 44444446777875
No 101
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=29.15 E-value=1.9e+02 Score=25.27 Aligned_cols=83 Identities=10% Similarity=0.096 Sum_probs=51.9
Q ss_pred EEEEeChhh----hhccchhhHHhHHHhcCcEEEEeeCCCCCC----------CCCCeeEEEeccCChHHHHHHHHHHHh
Q 027466 32 VGYALTSKK----TKSFLQPKLEGLARNKGILFVAIDQNRPLS----------DQGPFDIVLHKLTGKEWRQILEEYRQT 97 (223)
Q Consensus 32 VGy~l~~kK----~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~----------~QgpfDvILHKltd~~~~~~lq~y~~~ 97 (223)
||+.++-.. +....+.++.+.+++.|+++..++...+.+ +| .+|+|+= +...+.+.+.+..++
T Consensus 2 va~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~-g~dlIi~--~g~~~~~~~~~vA~~ 78 (258)
T cd06353 2 VAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENVPEGADAERVLRELAAQ-GYDLIFG--TSFGFMDAALKVAKE 78 (258)
T ss_pred EEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecCCchHhHHHHHHHHHHc-CCCEEEE--CchhhhHHHHHHHHH
Confidence 566665333 222334456777778899988887763322 23 4788876 666778888888999
Q ss_pred CCCeE--EeCC---hhhHHhhcCHH
Q 027466 98 HPEVT--VLDP---PYAIQHLHNRQ 117 (223)
Q Consensus 98 hP~v~--VIDP---~~~i~~L~dR~ 117 (223)
||++. ++|. .+++..+.-|.
T Consensus 79 ~p~~~F~~~d~~~~~~Nv~~~~~~~ 103 (258)
T cd06353 79 YPDVKFEHCSGYKTAPNVGSYFARI 103 (258)
T ss_pred CCCCEEEECCCCCCCCCeeeEechh
Confidence 99855 4444 24544444443
No 102
>PF06228 ChuX_HutX: Haem utilisation ChuX/HutX; InterPro: IPR010413 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2OVI_A 2PH0_B 3FM2_B 2HQV_A.
Probab=27.85 E-value=53 Score=27.10 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=12.9
Q ss_pred EEeeecC-cEEEEEEEecc
Q 027466 198 QEFVNHG-MQMAFGYLADI 215 (223)
Q Consensus 198 QeFINH~-gvlfKVYViG~ 215 (223)
=.|.|++ ..+||||+=-|
T Consensus 106 v~F~~~~G~~~fKvflgRd 124 (141)
T PF06228_consen 106 VQFFDADGEAMFKVFLGRD 124 (141)
T ss_dssp EEEEETTSSEEEEEEE-BS
T ss_pred EEEECCCCCEEEEEEeecC
Confidence 4577776 89999998644
No 103
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=26.77 E-value=2e+02 Score=22.26 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=38.6
Q ss_pred EEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCC----------CCC-CCCeeEEEeccCChHHHHHHHHHHHhC
Q 027466 30 VVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRP----------LSD-QGPFDIVLHKLTGKEWRQILEEYRQTH 98 (223)
Q Consensus 30 ~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~p----------l~~-QgpfDvILHKltd~~~~~~lq~y~~~h 98 (223)
.+||---.+.|.-... +..+ .++|.+.++++++.. +.+ .++.|+++-=..-..+.+.+++-.+..
T Consensus 4 AVvGaS~~~~~~g~~v---~~~l-~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g 79 (116)
T PF13380_consen 4 AVVGASDNPGKFGYRV---LRNL-KAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALG 79 (116)
T ss_dssp EEET--SSTTSHHHHH---HHHH-HHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT
T ss_pred EEEcccCCCCChHHHH---HHHH-HhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcC
Confidence 4555554444433322 2233 449999999999864 232 256676666666666666666666666
Q ss_pred CCeEEeCCh
Q 027466 99 PEVTVLDPP 107 (223)
Q Consensus 99 P~v~VIDP~ 107 (223)
...+++=|=
T Consensus 80 ~~~v~~~~g 88 (116)
T PF13380_consen 80 VKAVWLQPG 88 (116)
T ss_dssp -SEEEE-TT
T ss_pred CCEEEEEcc
Confidence 665555553
No 104
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=26.49 E-value=86 Score=26.67 Aligned_cols=23 Identities=13% Similarity=0.322 Sum_probs=19.4
Q ss_pred CcEEEEeeCCCCCCCCCCeeEEE
Q 027466 57 GILFVAIDQNRPLSDQGPFDIVL 79 (223)
Q Consensus 57 gi~fv~iD~~~pl~~QgpfDvIL 79 (223)
++.++.-|....+.+.+|||+|+
T Consensus 128 ~v~~~~gd~~~~~~~~~~fD~I~ 150 (212)
T PRK13942 128 NVEVIVGDGTLGYEENAPYDRIY 150 (212)
T ss_pred CeEEEECCcccCCCcCCCcCEEE
Confidence 58899999877777789999997
No 105
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.98 E-value=1.5e+02 Score=26.11 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=44.5
Q ss_pred CCCcEEEEEEeChh-----hhhccchh-------hHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHH
Q 027466 26 QSKLVVVGYALTSK-----KTKSFLQP-------KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEE 93 (223)
Q Consensus 26 ~~~~~~VGy~l~~k-----K~~~f~~~-------~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~ 93 (223)
++..-|||..-.|+ |.+....+ +|..-.+-.|=+||.-|.+.|+. +-.
T Consensus 71 s~e~~rIacvS~Psly~y~k~re~~~~~~~v~lfEfDkRFe~yg~eFvfYDyN~p~d--------------------lp~ 130 (217)
T KOG3350|consen 71 SGEGSRIACVSCPSLYVYQKKREIEIPHDQVYLFEFDKRFELYGTEFVFYDYNCPLD--------------------LPD 130 (217)
T ss_pred cccCceEEEEeCchHHhhhhhhhccCCceeEEEEEehhhHHhccceeEEeccCCCCC--------------------CHH
Confidence 34557788877776 33332111 23333355688999999998865 335
Q ss_pred HHHhCCCeEEeCChhhHHhhcC
Q 027466 94 YRQTHPEVTVLDPPYAIQHLHN 115 (223)
Q Consensus 94 y~~~hP~v~VIDP~~~i~~L~d 115 (223)
+++.|=+++|.|||---...+-
T Consensus 131 ~lk~~fdiivaDPPfL~~eCl~ 152 (217)
T KOG3350|consen 131 ELKAHFDIIVADPPFLSEECLA 152 (217)
T ss_pred HHHhcccEEEeCCccccchhhh
Confidence 6777789999999855444443
No 106
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=25.62 E-value=2.9e+02 Score=24.16 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=42.5
Q ss_pred CCCCcEEEEEEeChhhhhcc---chhhHHhHHHhcCcEEEEeeCCCCCCC---------CCCeeEEEeccCChHHHHHHH
Q 027466 25 QQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQILE 92 (223)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f---~~~~~~~~~~~~gi~fv~iD~~~pl~~---------QgpfDvILHKltd~~~~~~lq 92 (223)
.+.+..+||+.++.-- ..| ...++...|+++|+...-.+.+..-+. +..+|.||-=-.+......++
T Consensus 60 ~~~~~~~Igvv~~~~~-~~~~~~i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 138 (342)
T PRK10014 60 RGGQSGVIGLIVRDLS-APFYAELTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLRE 138 (342)
T ss_pred ccCCCCEEEEEeCCCc-cchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHH
Confidence 3455678999986421 112 123466788899988665554322111 235787775322222233444
Q ss_pred HHHHhCCCeEEeC
Q 027466 93 EYRQTHPEVTVLD 105 (223)
Q Consensus 93 ~y~~~hP~v~VID 105 (223)
...+..-+++.+|
T Consensus 139 ~l~~~~iPvV~~~ 151 (342)
T PRK10014 139 MAEEKGIPVVFAS 151 (342)
T ss_pred HHhhcCCCEEEEe
Confidence 4444444566666
No 107
>PRK04266 fibrillarin; Provisional
Probab=25.09 E-value=2.5e+02 Score=24.41 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=43.6
Q ss_pred CcEEEEEEeChhhhhccchhhHHhHHHh-cCcEEEEeeCCCCCCC---CCCeeEEEeccCChH----HHHHHHHHHHhCC
Q 027466 28 KLVVVGYALTSKKTKSFLQPKLEGLARN-KGILFVAIDQNRPLSD---QGPFDIVLHKLTGKE----WRQILEEYRQTHP 99 (223)
Q Consensus 28 ~~~~VGy~l~~kK~~~f~~~~~~~~~~~-~gi~fv~iD~~~pl~~---QgpfDvILHKltd~~----~~~~lq~y~~~hP 99 (223)
...++|+=.++...+.+. ..|++ .++.++.-|...|... ..+||+|+|-+.+.. ..+++.++.+..-
T Consensus 96 ~g~V~avD~~~~ml~~l~-----~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG 170 (226)
T PRK04266 96 EGVVYAVEFAPRPMRELL-----EVAEERKNIIPILADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGG 170 (226)
T ss_pred CCeEEEEECCHHHHHHHH-----HHhhhcCCcEEEECCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCc
Confidence 357899988887665443 23333 4788888888755211 246999999877532 1334444555554
Q ss_pred CeEE
Q 027466 100 EVTV 103 (223)
Q Consensus 100 ~v~V 103 (223)
.+++
T Consensus 171 ~lvI 174 (226)
T PRK04266 171 YLLL 174 (226)
T ss_pred EEEE
Confidence 5666
No 108
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=24.98 E-value=1.1e+02 Score=25.79 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHh-CCCeEEeCChhhHHhh
Q 027466 86 EWRQILEEYRQT-HPEVTVLDPPYAIQHL 113 (223)
Q Consensus 86 ~~~~~lq~y~~~-hP~v~VIDP~~~i~~L 113 (223)
.+.+.++++.++ .|+++|||++..++.-
T Consensus 110 ~l~~~i~~~~~~~~~~~vvID~l~~l~~~ 138 (242)
T cd00984 110 DIRSRARRLKKEHGLGLIVIDYLQLMSGS 138 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCchhcCCC
Confidence 456666666544 7899999999988644
No 109
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=24.24 E-value=2.2e+02 Score=21.19 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=14.4
Q ss_pred HHhHHHhcCcEEEEeeCCCC
Q 027466 49 LEGLARNKGILFVAIDQNRP 68 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~p 68 (223)
+..+.++.|++.+.++.+.|
T Consensus 19 ~~~~l~~~G~~v~~l~~~~~ 38 (125)
T cd02065 19 VAIALRDNGFEVIDLGVDVP 38 (125)
T ss_pred HHHHHHHCCCEEEEcCCCCC
Confidence 45567888999888866543
No 110
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=24.13 E-value=2e+02 Score=23.08 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=38.7
Q ss_pred hhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCCh-----------HHHHHHHHHHHhCCC
Q 027466 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGK-----------EWRQILEEYRQTHPE 100 (223)
Q Consensus 46 ~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~-----------~~~~~lq~y~~~hP~ 100 (223)
..+...+|...|.-.+|+-..+. ..|.+.+.+++..+. .+.+.+|+.+.+||+
T Consensus 119 ~~G~~~lA~~~~~pivp~~~~~~--~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~lE~~i~~~P~ 182 (192)
T cd07984 119 PTGPARLALKTGAPVVPAFAYRL--PGGGYRIEFEPPLENPPSEDVEEDTQRLNDALEAAIREHPE 182 (192)
T ss_pred hHHHHHHHHHHCCcEEEEEEEEc--CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHhCch
Confidence 34666788888888888877542 257899999998653 235568888888885
No 111
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=23.87 E-value=1.6e+02 Score=24.69 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCeEEeCChhhHHhh
Q 027466 88 RQILEEYRQTHPEVTVLDPPYAIQHL 113 (223)
Q Consensus 88 ~~~lq~y~~~hP~v~VIDP~~~i~~L 113 (223)
.+.+.++.+..++++|||++.++...
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSATSLYRL 122 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcHHHhHH
Confidence 34455555578999999999988655
No 112
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=23.21 E-value=88 Score=30.05 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=15.5
Q ss_pred HHHhCCCeEEeCChhhHHh
Q 027466 94 YRQTHPEVTVLDPPYAIQH 112 (223)
Q Consensus 94 y~~~hP~v~VIDP~~~i~~ 112 (223)
-.+.||+++||||..+...
T Consensus 190 ~~Q~rp~~vViDp~v~f~~ 208 (402)
T COG3598 190 LEQKRPDFVVIDPFVAFYE 208 (402)
T ss_pred HHHhCCCeEEEcchhhhcC
Confidence 3568999999999987753
No 113
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=22.81 E-value=1.7e+02 Score=27.50 Aligned_cols=62 Identities=19% Similarity=0.332 Sum_probs=40.5
Q ss_pred CcccHHHHHHHhhHhhh---------------------ccCCccc---CCCCcEEEEEEeChh---------hhhccchh
Q 027466 1 MRMMKEEIEEQTREEEL---------------------LSFPQTQ---QQSKLVVVGYALTSK---------KTKSFLQP 47 (223)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---------------------~~~~~~~---~~~~~~~VGy~l~~k---------K~~~f~~~ 47 (223)
|||-|+|+.+..||.|- .+-|.+. .+++.+-|+..-.+. |-....-.
T Consensus 213 lrMskqEVKdE~K~~EGdP~iK~rrR~~~re~a~~~m~~~V~~AdVVItNPTH~AVal~Y~~~~~~aP~vvakG~~~~A~ 292 (347)
T TIGR00328 213 LKMTKQEVKDELKQSEGDPEVKGRIRQMQREAARRRMMQEVPKADVVITNPTHYAVALKYDPGKMPAPVVVAKGVDELAL 292 (347)
T ss_pred CCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhHhhcCCCCcEEEECCCceEEEeEeCCCCCCCCEEEEeeCcHHHH
Confidence 68889998887777652 2233333 457777887776654 33344444
Q ss_pred hHHhHHHhcCcEEEE
Q 027466 48 KLEGLARNKGILFVA 62 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~ 62 (223)
...++|+++||-.+.
T Consensus 293 ~I~~~A~~~~vPi~~ 307 (347)
T TIGR00328 293 KIKEIARENNVPIVE 307 (347)
T ss_pred HHHHHHHHcCCCEEe
Confidence 677899999987554
No 114
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=22.69 E-value=2.4e+02 Score=23.68 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=21.2
Q ss_pred HHHHHHHHHHH-hCCCeEEeCChhhHHhhcC
Q 027466 86 EWRQILEEYRQ-THPEVTVLDPPYAIQHLHN 115 (223)
Q Consensus 86 ~~~~~lq~y~~-~hP~v~VIDP~~~i~~L~d 115 (223)
.+...+.+.++ ..|+++|||++..+....+
T Consensus 102 ~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~ 132 (226)
T PF06745_consen 102 ELLSKIREAIEELKPDRVVIDSLSALLLYDD 132 (226)
T ss_dssp HHHHHHHHHHHHHTSSEEEEETHHHHTTSSS
T ss_pred HHHHHHHHHHHhcCCCEEEEECHHHHhhcCC
Confidence 35566666655 4789999999999943333
No 115
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=22.02 E-value=1.7e+02 Score=23.32 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=24.5
Q ss_pred HHHHHHHH-HHhCCCeEEeCChhhHHh---hcCHHHHHHHHHhc
Q 027466 87 WRQILEEY-RQTHPEVTVLDPPYAIQH---LHNRQSMLQCVADM 126 (223)
Q Consensus 87 ~~~~lq~y-~~~hP~v~VIDP~~~i~~---L~dR~~~~~~l~~l 126 (223)
+...+.+. .+..|+++|||++.+... -..|..+.+.+..+
T Consensus 83 ~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l 126 (187)
T cd01124 83 LIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFAL 126 (187)
T ss_pred HHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHH
Confidence 44555444 456799999999998765 22344444444444
No 116
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=21.51 E-value=97 Score=26.79 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=31.4
Q ss_pred cEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEecc
Q 027466 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKL 82 (223)
Q Consensus 29 ~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKl 82 (223)
..++|.=.++ .++..|++++++|+.-|.... ...++||+|+=-.
T Consensus 54 ~~v~gvD~s~---------~~~~~a~~~~~~~~~~d~~~~-~~~~~fD~v~~~~ 97 (255)
T PRK14103 54 AVIEALDSSP---------EMVAAARERGVDARTGDVRDW-KPKPDTDVVVSNA 97 (255)
T ss_pred CEEEEEECCH---------HHHHHHHhcCCcEEEcChhhC-CCCCCceEEEEeh
Confidence 4567777664 456677888999999998643 3447899997543
No 117
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=21.47 E-value=2.3e+02 Score=19.98 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=17.9
Q ss_pred cEEEEEEeChhhhhccchhhHHhHHH----hcCcEEEEeeCC
Q 027466 29 LVVVGYALTSKKTKSFLQPKLEGLAR----NKGILFVAIDQN 66 (223)
Q Consensus 29 ~~~VGy~l~~kK~~~f~~~~~~~~~~----~~gi~fv~iD~~ 66 (223)
...|-+|-+.-..-.-..+.+.++.+ +.++++|.|..+
T Consensus 3 ~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d 44 (95)
T PF13905_consen 3 PVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD 44 (95)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC
Confidence 44555555543322222234443333 357888888874
No 118
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=21.18 E-value=71 Score=27.88 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=43.3
Q ss_pred HhHHHhcCcEEEEeeCCCCCCC--CCCeeEEEeccCChHH---HHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHH
Q 027466 50 EGLARNKGILFVAIDQNRPLSD--QGPFDIVLHKLTGKEW---RQILEEYRQTHPEVTVLDPPYAIQHLHNRQSML 120 (223)
Q Consensus 50 ~~~~~~~gi~fv~iD~~~pl~~--QgpfDvILHKltd~~~---~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~ 120 (223)
+.-|-++|+..+.-|++..|.. .+.||.||=--|=+.+ .+.|++-.+---.++|- +.|--.--+|.+++
T Consensus 49 v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVs--FPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 49 VAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVS--FPNFGHWRNRLQLL 122 (193)
T ss_pred HHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEE--ecChHHHHHHHHHH
Confidence 4467889999999999999886 5799999843332222 23355554433344443 33455555666655
No 119
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=21.14 E-value=4.4e+02 Score=22.91 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=44.8
Q ss_pred CCCcEEEEEEeChhhhhccc---hhhHHhHHHhcCcEEEEeeCCCCCC---------CCCCeeEEEeccCChHHHHHHHH
Q 027466 26 QSKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRPLS---------DQGPFDIVLHKLTGKEWRQILEE 93 (223)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f~---~~~~~~~~~~~gi~fv~iD~~~pl~---------~QgpfDvILHKltd~~~~~~lq~ 93 (223)
+.+..+||..++.-. ..|. ..++...|+++|+.++-.+.+..-+ .+..+|-||==-++......+++
T Consensus 57 ~~~~~~Igvi~~~~~-~~~~~~~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 135 (327)
T TIGR02417 57 AGRSRTIGLVIPDLE-NYSYARIAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPEDAYYQK 135 (327)
T ss_pred cCCCceEEEEeCCCC-CccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHH
Confidence 445689999987422 2221 2345668888999988776643311 12457866532222212234455
Q ss_pred HHHhCCCeEEeCC
Q 027466 94 YRQTHPEVTVLDP 106 (223)
Q Consensus 94 y~~~hP~v~VIDP 106 (223)
..+..-+++++|.
T Consensus 136 l~~~~iPvV~~~~ 148 (327)
T TIGR02417 136 LQNEGLPVVALDR 148 (327)
T ss_pred HHhcCCCEEEEcc
Confidence 5555556788874
No 120
>cd08616 PI-PLCXD1c Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1. This subfamily corresponds to the catalytic domain present in a group of phosphatidylinositol-specific phospholipase C X domain containing 1 (PI-PLCXD1), 2 (PI-PLCXD2) and 3 (PI-PLCXD3), which are bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) sequence homologs found in vertebrates. The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, members in this group contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to
Probab=21.03 E-value=2.7e+02 Score=25.20 Aligned_cols=48 Identities=25% Similarity=0.457 Sum_probs=34.1
Q ss_pred cCcEEEEeeCCCCCCCCCCeeEEEeccCCh---HHHHHHHHHHHhCC-CeEEeC
Q 027466 56 KGILFVAIDQNRPLSDQGPFDIVLHKLTGK---EWRQILEEYRQTHP-EVTVLD 105 (223)
Q Consensus 56 ~gi~fv~iD~~~pl~~QgpfDvILHKltd~---~~~~~lq~y~~~hP-~v~VID 105 (223)
.|+.|.-+.+...-. .+.+ .+.|=+.+. ++.+.+.+|.++|| |++++|
T Consensus 70 ~GiRyfDlRv~~~~~-~~~~-~~~Hg~~~~~~~~~L~~i~~fl~~~p~Evvil~ 121 (290)
T cd08616 70 AGIRYFDLRIATKPK-DNDL-YFVHGLYGILVKEILEEINDFLTEHPKEVVILD 121 (290)
T ss_pred cCceEEEEEecccCC-CCcE-EEEEeccchhHHHHHHHHHHHHHHCCCcEEEEE
Confidence 599999888865422 3344 356766664 35677889999999 788887
No 121
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.53 E-value=99 Score=27.87 Aligned_cols=91 Identities=14% Similarity=0.215 Sum_probs=55.6
Q ss_pred CCcEEEEEEeChhhhhccchhh------HHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHH-hCC
Q 027466 27 SKLVVVGYALTSKKTKSFLQPK------LEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQ-THP 99 (223)
Q Consensus 27 ~~~~~VGy~l~~kK~~~f~~~~------~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~-~hP 99 (223)
.+..+|-|.-++.=.+.|+.+. +.++--.-.+.|+++|++--...-++-+.+|+ .+-++.+ ..-
T Consensus 54 ~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~---------~l~~~~k~~~~ 124 (235)
T COG2874 54 MNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLD---------LLLEFIKRWEK 124 (235)
T ss_pred hCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccChHHHHHHHH---------HHHhhHHhhcC
Confidence 5678999999999877777431 22333344677888888722221222222222 2333333 345
Q ss_pred CeEEeCChhhHHhhcCHHHHHHHHHhc
Q 027466 100 EVTVLDPPYAIQHLHNRQSMLQCVADM 126 (223)
Q Consensus 100 ~v~VIDP~~~i~~L~dR~~~~~~l~~l 126 (223)
+|++||.+.++-.--++...++.+..+
T Consensus 125 dViIIDSls~~~~~~~~~~vl~fm~~~ 151 (235)
T COG2874 125 DVIIIDSLSAFATYDSEDAVLNFMTFL 151 (235)
T ss_pred CEEEEecccHHhhcccHHHHHHHHHHH
Confidence 899999998887766676666665543
No 122
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=20.52 E-value=1e+02 Score=25.71 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCeEEeCChhhHH
Q 027466 88 RQILEEYRQTHPEVTVLDPPYAIQ 111 (223)
Q Consensus 88 ~~~lq~y~~~hP~v~VIDP~~~i~ 111 (223)
...+.++.+.+++++|||++.++.
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi~~l~ 116 (218)
T cd01394 93 IQETETFADEKVDLVVVDSATALY 116 (218)
T ss_pred HHHHHHHHhcCCcEEEEechHHhh
Confidence 345666666679999999999884
Done!