Query 027466
Match_columns 223
No_of_seqs 123 out of 152
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 17:22:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q7d_A Inositol-tetrakisphosph 100.0 1.5E-42 5.2E-47 316.2 20.3 196 25-221 14-222 (346)
2 1z2n_X Inositol 1,3,4-trisphos 99.9 4.2E-22 1.4E-26 174.7 15.7 184 25-220 7-195 (324)
3 1uc8_A LYSX, lysine biosynthes 99.0 1E-09 3.5E-14 92.7 10.0 158 48-219 15-190 (280)
4 3t7a_A Inositol pyrophosphate 98.9 1.4E-08 4.7E-13 92.3 12.7 184 26-221 4-224 (330)
5 1iow_A DD-ligase, DDLB, D-ALA\ 98.8 7.5E-08 2.6E-12 82.6 13.9 150 48-217 25-197 (306)
6 3r5x_A D-alanine--D-alanine li 98.8 2.2E-08 7.4E-13 86.7 9.9 154 49-217 27-192 (307)
7 3se7_A VANA; alpha-beta struct 98.7 2.3E-08 7.8E-13 89.2 8.0 150 49-216 27-223 (346)
8 4eg0_A D-alanine--D-alanine li 98.7 2.5E-07 8.6E-12 81.1 12.9 176 29-217 13-206 (317)
9 3q2o_A Phosphoribosylaminoimid 98.4 5.3E-06 1.8E-10 74.7 14.5 155 46-215 26-204 (389)
10 1i7n_A Synapsin II; synapse, p 98.4 2.7E-06 9.3E-11 76.5 11.6 129 74-218 68-213 (309)
11 2p0a_A Synapsin-3, synapsin II 98.3 7.8E-06 2.7E-10 74.7 12.3 130 74-219 85-231 (344)
12 1gsa_A Glutathione synthetase; 98.2 3.9E-06 1.3E-10 71.6 9.1 153 48-219 23-220 (316)
13 2i87_A D-alanine-D-alanine lig 98.2 4.9E-06 1.7E-10 74.4 9.8 127 73-216 86-229 (364)
14 3orq_A N5-carboxyaminoimidazol 98.2 5.4E-05 1.9E-09 68.2 15.4 151 47-213 25-200 (377)
15 1pk8_A RAT synapsin I; ATP bin 98.2 1.4E-05 4.9E-10 74.9 11.8 129 74-218 180-325 (422)
16 3k5i_A Phosphoribosyl-aminoimi 98.1 2.6E-05 9E-10 71.1 13.1 153 46-215 36-217 (403)
17 1ehi_A LMDDL2, D-alanine:D-lac 98.1 2.7E-05 9.3E-10 70.3 12.0 130 74-216 93-233 (377)
18 1e4e_A Vancomycin/teicoplanin 98.0 3.3E-05 1.1E-09 68.3 11.1 100 100-216 116-223 (343)
19 3ln6_A Glutathione biosynthesi 98.0 1.5E-05 5.1E-10 79.3 9.2 142 48-221 432-586 (750)
20 3ax6_A Phosphoribosylaminoimid 98.0 0.00012 4.1E-09 65.2 14.1 149 48-215 15-185 (380)
21 3aw8_A PURK, phosphoribosylami 98.0 4.8E-05 1.6E-09 67.6 11.2 149 49-215 14-188 (369)
22 3vot_A L-amino acid ligase, BL 97.9 0.0005 1.7E-08 62.2 17.6 140 48-202 19-202 (425)
23 4ffl_A PYLC; amino acid, biosy 97.9 0.00034 1.2E-08 61.9 16.0 145 48-221 15-181 (363)
24 2z04_A Phosphoribosylaminoimid 97.9 2.7E-05 9.1E-10 69.0 8.5 147 48-215 15-184 (365)
25 3e5n_A D-alanine-D-alanine lig 97.9 0.00022 7.6E-09 64.9 14.2 175 28-217 21-257 (386)
26 2pn1_A Carbamoylphosphate synt 97.9 3.5E-05 1.2E-09 66.9 8.4 101 100-215 98-202 (331)
27 4e4t_A Phosphoribosylaminoimid 97.9 6.6E-05 2.2E-09 69.1 10.6 151 47-214 48-227 (419)
28 3lwb_A D-alanine--D-alanine li 97.8 6.3E-05 2.2E-09 68.2 9.3 126 74-216 109-246 (373)
29 3i12_A D-alanine-D-alanine lig 97.8 0.00013 4.6E-09 65.4 11.0 126 74-216 98-237 (364)
30 1kjq_A GART 2, phosphoribosylg 97.8 0.00023 8E-09 63.2 12.4 151 47-214 24-209 (391)
31 3k3p_A D-alanine--D-alanine li 97.8 0.00011 3.8E-09 67.1 10.0 173 30-216 38-259 (383)
32 3eth_A Phosphoribosylaminoimid 97.8 0.00036 1.2E-08 63.2 13.2 146 48-213 15-167 (355)
33 4fu0_A D-alanine--D-alanine li 97.7 6E-05 2E-09 67.5 7.6 132 74-219 97-238 (357)
34 3mjf_A Phosphoribosylamine--gl 97.7 0.00019 6.4E-09 66.1 11.1 111 89-215 81-205 (431)
35 3lp8_A Phosphoribosylamine-gly 97.7 0.00022 7.4E-09 66.0 10.8 109 91-215 99-221 (442)
36 2fb9_A D-alanine:D-alanine lig 97.7 9.1E-05 3.1E-09 65.2 7.6 125 72-216 74-209 (322)
37 2dwc_A PH0318, 433AA long hypo 97.7 0.0002 6.8E-09 65.0 9.9 151 47-214 32-217 (433)
38 3df7_A Putative ATP-grAsp supe 97.6 0.00043 1.5E-08 60.8 11.4 109 73-215 68-177 (305)
39 4dim_A Phosphoribosylglycinami 97.6 0.00022 7.5E-09 63.8 9.4 140 47-202 20-192 (403)
40 2pvp_A D-alanine-D-alanine lig 97.6 0.001 3.6E-08 60.1 13.7 127 74-216 107-246 (367)
41 2xcl_A Phosphoribosylamine--gl 97.5 0.00019 6.4E-09 64.9 8.0 99 100-213 86-198 (422)
42 2ip4_A PURD, phosphoribosylami 97.5 0.00032 1.1E-08 63.4 9.3 100 100-214 85-194 (417)
43 2yw2_A Phosphoribosylamine--gl 97.5 0.00025 8.7E-09 64.0 8.2 99 100-213 86-198 (424)
44 2qk4_A Trifunctional purine bi 97.4 0.0004 1.4E-08 63.6 8.8 100 100-214 112-226 (452)
45 2yrx_A Phosphoribosylglycinami 97.4 0.00045 1.5E-08 63.3 9.0 99 100-213 107-219 (451)
46 3tqt_A D-alanine--D-alanine li 97.4 0.00054 1.9E-08 62.2 9.4 129 74-216 98-238 (372)
47 3ouz_A Biotin carboxylase; str 97.4 0.00031 1.1E-08 64.2 7.1 102 100-215 103-220 (446)
48 3vmm_A Alanine-anticapsin liga 97.4 0.0032 1.1E-07 58.9 14.0 124 47-204 92-234 (474)
49 3ln7_A Glutathione biosynthesi 97.3 0.00052 1.8E-08 68.4 9.0 146 47-221 436-592 (757)
50 2r85_A PURP protein PF1517; AT 97.3 0.0015 5E-08 56.3 10.3 130 47-202 14-177 (334)
51 1vkz_A Phosphoribosylamine--gl 97.3 0.00069 2.4E-08 61.5 8.5 99 102-215 93-204 (412)
52 1a9x_A Carbamoyl phosphate syn 97.3 0.00072 2.5E-08 69.3 9.3 154 48-216 32-224 (1073)
53 1a9x_A Carbamoyl phosphate syn 97.2 0.0034 1.2E-07 64.3 12.9 102 100-215 658-769 (1073)
54 2dzd_A Pyruvate carboxylase; b 97.1 0.0014 4.9E-08 59.9 8.5 102 100-215 104-221 (461)
55 2w70_A Biotin carboxylase; lig 96.9 0.001 3.5E-08 60.6 6.1 102 100-215 99-217 (449)
56 1ulz_A Pyruvate carboxylase N- 96.6 0.0015 5.1E-08 59.5 4.7 102 100-215 98-215 (451)
57 2pbz_A Hypothetical protein; N 96.6 0.0022 7.6E-08 57.6 5.5 131 48-202 15-167 (320)
58 1w96_A ACC, acetyl-coenzyme A 96.4 0.0041 1.4E-07 58.9 6.4 105 101-216 158-295 (554)
59 2vpq_A Acetyl-COA carboxylase; 96.4 0.0032 1.1E-07 57.3 5.5 102 100-215 98-215 (451)
60 3glk_A Acetyl-COA carboxylase 96.4 0.0052 1.8E-07 58.6 7.0 106 100-216 148-289 (540)
61 3jrx_A Acetyl-COA carboxylase 96.3 0.0061 2.1E-07 59.0 7.1 106 100-216 164-305 (587)
62 3u9t_A MCC alpha, methylcroton 96.3 0.0042 1.4E-07 60.8 5.5 103 100-215 125-242 (675)
63 2cqy_A Propionyl-COA carboxyla 96.2 0.00099 3.4E-08 48.4 0.4 64 134-203 20-98 (108)
64 3n6r_A Propionyl-COA carboxyla 96.1 0.0075 2.6E-07 59.1 6.3 109 93-216 93-217 (681)
65 3hbl_A Pyruvate carboxylase; T 95.4 0.024 8.1E-07 58.8 6.9 102 100-215 102-219 (1150)
66 2qf7_A Pyruvate carboxylase pr 95.3 0.021 7.3E-07 59.3 6.5 103 100-216 118-236 (1165)
67 3va7_A KLLA0E08119P; carboxyla 94.4 0.03 1E-06 58.6 4.7 103 100-216 128-245 (1236)
68 1wr2_A Hypothetical protein PH 94.4 0.035 1.2E-06 46.7 4.3 93 113-216 19-130 (238)
69 2r7k_A 5-formaminoimidazole-4- 93.1 0.25 8.4E-06 44.8 7.8 130 48-202 31-203 (361)
70 3ufx_B Succinyl-COA synthetase 87.3 0.4 1.4E-05 44.0 3.7 79 134-216 16-108 (397)
71 2nu8_B SCS-beta, succinyl-COA 83.4 1.4 4.7E-05 40.3 5.3 80 134-217 16-117 (388)
72 2io8_A Bifunctional glutathion 76.4 44 0.0015 32.4 13.6 167 31-218 381-593 (619)
73 2fp4_B Succinyl-COA ligase [GD 72.8 2.9 0.0001 38.3 4.0 79 134-216 16-123 (395)
74 3gyb_A Transcriptional regulat 42.3 55 0.0019 26.2 6.3 51 27-79 3-65 (280)
75 3tig_A TTL protein; ATP-grAsp, 38.6 17 0.00058 33.3 2.7 148 49-213 20-209 (380)
76 3l49_A ABC sugar (ribose) tran 36.6 81 0.0028 25.3 6.4 79 27-106 3-94 (291)
77 3s99_A Basic membrane lipoprot 36.2 59 0.002 28.8 5.9 90 25-116 22-131 (356)
78 3jwg_A HEN1, methyltransferase 35.7 75 0.0026 24.7 5.9 77 29-106 54-141 (219)
79 2l2q_A PTS system, cellobiose- 34.7 95 0.0033 22.5 6.0 79 44-125 19-101 (109)
80 2vob_A Trypanothione synthetas 34.6 3.3E+02 0.011 26.5 11.7 148 49-218 415-608 (652)
81 3brq_A HTH-type transcriptiona 34.6 62 0.0021 25.9 5.4 81 25-106 15-109 (296)
82 3ou2_A SAM-dependent methyltra 33.6 94 0.0032 23.7 6.1 69 29-107 69-148 (218)
83 3uug_A Multiple sugar-binding 33.2 1.5E+02 0.0051 24.2 7.7 79 28-106 2-92 (330)
84 1vbf_A 231AA long hypothetical 33.1 27 0.00091 27.6 2.8 24 57-80 117-140 (231)
85 1jx6_A LUXP protein; protein-l 32.7 1.9E+02 0.0064 23.9 8.3 98 6-106 20-137 (342)
86 1vlm_A SAM-dependent methyltra 29.8 60 0.002 25.5 4.4 34 48-81 76-109 (219)
87 3o1i_D Periplasmic protein TOR 29.8 1.2E+02 0.0041 24.4 6.4 41 26-67 2-45 (304)
88 3dp7_A SAM-dependent methyltra 29.7 70 0.0024 27.7 5.2 49 57-107 230-289 (363)
89 1jg1_A PIMT;, protein-L-isoasp 28.8 34 0.0012 27.4 2.8 23 57-79 141-163 (235)
90 3l6u_A ABC-type sugar transpor 27.6 89 0.003 25.1 5.2 81 25-106 4-97 (293)
91 3jy6_A Transcriptional regulat 26.4 1.3E+02 0.0046 23.9 6.1 78 26-106 4-93 (276)
92 2iks_A DNA-binding transcripti 26.3 2.1E+02 0.0073 22.9 7.4 81 25-106 16-108 (293)
93 2yxe_A Protein-L-isoaspartate 25.0 46 0.0016 25.9 2.9 51 29-81 103-153 (215)
94 3mi6_A Alpha-galactosidase; NE 24.9 52 0.0018 32.7 3.8 62 41-103 456-524 (745)
95 3jwh_A HEN1; methyltransferase 24.3 57 0.002 25.4 3.3 78 29-107 54-142 (217)
96 3lbf_A Protein-L-isoaspartate 24.0 49 0.0017 25.6 2.8 25 57-81 126-150 (210)
97 1r18_A Protein-L-isoaspartate( 23.5 50 0.0017 26.2 2.9 50 30-80 116-169 (227)
98 3kjx_A Transcriptional regulat 23.0 2.2E+02 0.0076 23.6 7.0 78 25-104 64-153 (344)
99 2plc_A PI-PLC, phosphatidylino 22.9 83 0.0028 26.8 4.3 43 56-105 56-104 (274)
100 2p7i_A Hypothetical protein; p 22.3 68 0.0023 25.0 3.4 41 30-80 66-109 (250)
101 3i53_A O-methyltransferase; CO 22.1 1.6E+02 0.0054 24.8 5.9 50 56-107 219-276 (332)
102 2x7x_A Sensor protein; transfe 22.0 2E+02 0.0067 23.7 6.4 79 26-106 3-95 (325)
103 3gwz_A MMCR; methyltransferase 21.8 1.7E+02 0.0057 25.3 6.1 50 56-107 252-309 (369)
104 3tb6_A Arabinose metabolism tr 21.7 1.8E+02 0.006 23.2 5.9 78 28-106 14-107 (298)
105 3rot_A ABC sugar transporter, 21.2 1.3E+02 0.0045 24.3 5.1 78 28-106 2-94 (297)
106 3egc_A Putative ribose operon 21.2 2.2E+02 0.0076 22.7 6.5 79 26-106 5-95 (291)
107 3lte_A Response regulator; str 21.0 2.1E+02 0.0071 19.6 6.2 70 90-169 42-111 (132)
108 3nbm_A PTS system, lactose-spe 20.7 2.6E+02 0.0088 20.6 6.7 78 43-124 20-104 (108)
No 1
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=100.00 E-value=1.5e-42 Score=316.16 Aligned_cols=196 Identities=30% Similarity=0.510 Sum_probs=177.0
Q ss_pred CCCCcEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCC------------hHHHHHHH
Q 027466 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTG------------KEWRQILE 92 (223)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd------------~~~~~~lq 92 (223)
.++++++|||||++||+++|++++|.+.++++|+++++||++.++.+|++||+||||+++ ..|.+.|+
T Consensus 14 ~~~~~~~vG~~l~~kk~~~~~~~~l~~al~~~G~~~~~iD~~~~~~~~~~~Dvvi~~l~~~~~ea~~~d~~~~~~~~~l~ 93 (346)
T 2q7d_A 14 TFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLTDVILEADQNDSQSLELVHRFQ 93 (346)
T ss_dssp GGGTTCEEEEECCHHHHHHHTHHHHHHHHHTTTCEEEECCTTSCSGGGCCCSEEEECCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCceEEEEEECcccchhhhHHHHHHHHHhCCcEEEEcccccchhhcCCCCEEEeCCcccccccccCchhHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999998 36899999
Q ss_pred HHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccC-CCCchHHHHhcCCccceEEeeeccc
Q 027466 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERD-ASSIPDVVLKAGLTLPLVAKPLVAD 171 (223)
Q Consensus 93 ~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~-~~~~~~~l~~agl~fP~I~KplvA~ 171 (223)
+|...||.++||||+.+++++.||..|++.|.+...+.....+.+|+++++.+. ..+..+.++..++.||+|+||+.++
T Consensus 94 ~~~~~~~gv~vinp~~ai~~~~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~P~VvKP~~g~ 173 (346)
T 2q7d_A 94 EYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAH 173 (346)
T ss_dssp HHHHHCTTSEEESCHHHHHHTTBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCSSEEEECSBCS
T ss_pred HHHHHCCCeEEcCCHHHHHHhhhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 999999999999999999999999999999998644334457999999999753 3566667777899999999999999
Q ss_pred CCCCCeeEEEEeccccccCCCCceeEEEeeecCcEEEEEEEecceEEEEE
Q 027466 172 GSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 172 Gs~~SH~Maivf~~~gL~~l~~P~VlQeFINH~gvlfKVYViG~~~~v~~ 221 (223)
||+ ||.|++|++.++|..+..|+++||||||+|+.|||||||+++..++
T Consensus 174 Gs~-s~~v~~v~~~~~l~~~~~~~lvQefI~~~G~dirv~VvG~~v~~~~ 222 (346)
T 2q7d_A 174 GTN-SHEMAIVFNQEGLNAIQPPCVVQNFINHNAVLYKVFVVGESYTVVQ 222 (346)
T ss_dssp STT-CCEEEEECSGGGTTC--CCEEEEECCCCTTEEEEEEEETTEEEEEE
T ss_pred cce-eeeeEEecCHHHHHhcCCCEEEEEeeCCCCeEEEEEEECCEEEEEE
Confidence 998 9999999999999999999999999999999999999999987754
No 2
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=99.88 E-value=4.2e-22 Score=174.68 Aligned_cols=184 Identities=14% Similarity=0.245 Sum_probs=156.2
Q ss_pred CCCCcEEEEEEeChhhhhccchhhHHhHHHhcCcEE--EEeeCCCCCCCCC-CeeEEEeccCCh--HHHHHHHHHHHhCC
Q 027466 25 QQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILF--VAIDQNRPLSDQG-PFDIVLHKLTGK--EWRQILEEYRQTHP 99 (223)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~f--v~iD~~~pl~~Qg-pfDvILHKltd~--~~~~~lq~y~~~hP 99 (223)
...+..+||++.+++++ ++ .+...++++|+++ +.+|.+.|+..++ ++|+++|++++. .+.+.++.+...++
T Consensus 7 ~~~~~m~i~il~~~~~~-s~---~l~~al~~~G~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~~~~l~~~~~~~~ 82 (324)
T 1z2n_X 7 TTKQTVSLFIWLPESKQ-KT---LFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRTHPVGKMADEMRKYEKDHP 82 (324)
T ss_dssp ---CEEEEEEECCHHHH-HH---HBSSCCSEEEEEETTEEEEEEEESSCCSSCCSEEEECCSCSSSHHHHHHHHHHHHCT
T ss_pred ccCCcEEEEEEEchhhh-hh---hHHHHHHhcCcEEEEEEecCCCCccccCCCceEEEEeccchHHHHHHHHHHHHHhCC
Confidence 44456799999998877 54 5667778899999 9999987887777 899999999886 67888999998888
Q ss_pred CeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeE
Q 027466 100 EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHEL 179 (223)
Q Consensus 100 ~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~M 179 (223)
.+.+++|+++++...||..+.+.+++. .+.+|+++.+++ .+++.+.+.+.|+.||+|+||...+|+..||.+
T Consensus 83 g~~~~~~~~~~~~~~dK~~~~~~l~~~-------gi~~P~~~~~~~-~~~~~~~~~~~~~~~P~vvKP~~g~g~~~s~gv 154 (324)
T 1z2n_X 83 KVLFLESSAIHDMMSSREEINALLIKN-------NIPIPNSFSVKS-KEEVIQLLQSKQLILPFIVKPENAQGTFNAHQM 154 (324)
T ss_dssp TSEEETCHHHHHHHTBHHHHHHHHHHT-------TCCCSCEEEESS-HHHHHHHHHTTCSCSSEEEEESBCSSSSGGGEE
T ss_pred CCeEeCCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEEeCC-HHHHHHHHHHcCCCCCEEEeeCCCCCCccceee
Confidence 999999999999999999999998863 478999998853 223344455567889999999998888888999
Q ss_pred EEEeccccccCCCCceeEEEeeecCcEEEEEEEecceEEEE
Q 027466 180 SLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIF 220 (223)
Q Consensus 180 aivf~~~gL~~l~~P~VlQeFINH~gvlfKVYViG~~~~v~ 220 (223)
.++.+++.|..+..|+++||||++.|.-+.|||+|+.+..+
T Consensus 155 ~~v~~~~~l~~~~~~~lvqe~i~~~g~~~~v~v~g~~~~~~ 195 (324)
T 1z2n_X 155 KIVLEQEGIDDIHFPCLCQHYINHNNKIVKVFCIGNTLKWQ 195 (324)
T ss_dssp EEECSGGGGTTCCSSEEEEECCCCTTCEEEEEEETTEEEEE
T ss_pred EEEeCHHHHhhcCCCEEEEEccCCCCcEEEEEEECCEEEEE
Confidence 99999999999899999999999999999999999987654
No 3
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=99.03 E-value=1e-09 Score=92.71 Aligned_cols=158 Identities=13% Similarity=0.142 Sum_probs=108.9
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCCC-------CCCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHH
Q 027466 48 KLEGLARNKGILFVAIDQNRPLSD-------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSML 120 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~~-------QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~ 120 (223)
.+...+++.|+.++.+|.+..... ...+|++++...+......+.++.++. .+.++.|+++++...|+..+.
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~~dK~~~~ 93 (280)
T 1uc8_A 15 MLFERAEALGLPYKKVYVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTAL-GIPVVNRPEVIEACGDKWATS 93 (280)
T ss_dssp HHHHHHHHHTCCEEEEEGGGCCEETTBCCGGGTTCCEEEECCSSHHHHHHHHHHHHHT-TCCEESCHHHHHHHHBHHHHH
T ss_pred HHHHHHHHcCCcEEEEehhhceeeccCCCcccCCCCEEEECCccchhhHHHHHHHHHC-CCceeCCHHHHHHhCCHHHHH
Confidence 466778899999999998654311 236895565544332233455555554 566778999999999999999
Q ss_pred HHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------C--
Q 027466 121 QCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------L-- 191 (223)
Q Consensus 121 ~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l-- 191 (223)
+.+++. .+.+|++..+++ .+++.+.+. .+.||+|+||....|+ ..+.++.+++.|.+ +
T Consensus 94 ~~l~~~-------gi~~p~~~~~~~-~~~~~~~~~--~~~~p~vvKp~~g~~~---~gv~~v~~~~el~~~~~~~~~~~~ 160 (280)
T 1uc8_A 94 VALAKA-------GLPQPKTALATD-REEALRLME--AFGYPVVLKPVIGSWG---RLLAXXXXXXXXXXXXXXKEVLGG 160 (280)
T ss_dssp HHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEECSBCCBC---SHHHHHHHHHC------------C
T ss_pred HHHHHc-------CcCCCCeEeeCC-HHHHHHHHH--HhCCCEEEEECCCCCc---ccceecccccccchhhhhHhhhcc
Confidence 998864 467899998853 223233333 3569999999998765 34445666555432 1
Q ss_pred --CCceeEEEeeecCcEEEEEEEecceEEE
Q 027466 192 --EPPLVLQEFVNHGMQMAFGYLADIHYII 219 (223)
Q Consensus 192 --~~P~VlQeFINH~gvlfKVYViG~~~~v 219 (223)
..++++||||+..+.=+.++++|+.+..
T Consensus 161 ~~~~~~lvqe~i~~~~~e~~v~v~~~~~~~ 190 (280)
T 1uc8_A 161 FQHQLFYIQEYVEKPGRDIRVFVVGERAIA 190 (280)
T ss_dssp TTTTCEEEEECCCCSSCCEEEEEETTEEEE
T ss_pred cCCCcEEEEeccCCCCceEEEEEECCEEEE
Confidence 4699999999987788899999988644
No 4
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=98.90 E-value=1.4e-08 Score=92.33 Aligned_cols=184 Identities=18% Similarity=0.210 Sum_probs=121.1
Q ss_pred CCCcEEEEEEeChhhhhccchhhHH-hHHHhcCcEEEEee----CCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCC
Q 027466 26 QSKLVVVGYALTSKKTKSFLQPKLE-GLARNKGILFVAID----QNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPE 100 (223)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f~~~~~~-~~~~~~gi~fv~iD----~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~ 100 (223)
+++..+||.|--+||.+|=--+.++ .+.+..-++.+--. ++.|.++=--+|++|--.++-==-+...+|.+.. .
T Consensus 4 ~~~~~~~gvcam~~k~~s~pm~~il~rl~~~~~f~~iif~d~~il~~~ve~wp~~d~lisf~s~gfpl~kai~y~~lr-~ 82 (330)
T 3t7a_A 4 TERQIVVGICSMAKKSKSKPMKEILERISLFKYITVVVFEEEVILNEPVENWPLCDCLISFHSKGFPLDKAVAYAKLR-N 82 (330)
T ss_dssp --CCEEEEEESCHHHHTSHHHHHHHHHHTTSTTEEEEECCHHHHHHSCGGGSCCCSEEEECCCTTCCHHHHHHHHHHH-C
T ss_pred CCCceEEEEEecccccccHHHHHHHHHhcccCcEEEEEeCCCceecCCcccCCcCCEEEEeccCCCcHHHHHHHHHHh-C
Confidence 4678999999999997774444444 34333334443322 2344444456677776666531123455666653 4
Q ss_pred eEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC-----Cc---hHHHHh--cCCccceEEeeecc
Q 027466 101 VTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-----SI---PDVVLK--AGLTLPLVAKPLVA 170 (223)
Q Consensus 101 v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~-----~~---~~~l~~--agl~fP~I~KplvA 170 (223)
..+|..+.++..+.||...++.|++ ..|.+|+.++++.+.. ++ .+.++- ..+.+|+|.||+-+
T Consensus 83 p~~INd~~~q~~~~DK~~~~~iL~~-------~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~kPfVeKPv~G 155 (330)
T 3t7a_A 83 PFVINDLNMQYLIQDRREVYSILQA-------EGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQKPFVEKPVSA 155 (330)
T ss_dssp CEESBCSTHHHHHTBHHHHHHHHHH-------TTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEESSEEEEESBT
T ss_pred CceeCCHHHHHHHHHHHHHHHHHHH-------cCCCCCCEEEEeCCCCCccccceeccchhhhhccccccCCeeEccccc
Confidence 6789999999999999999999986 3688999999976432 11 111221 23679999999985
Q ss_pred cCCCCCeeEEEEecc----------------cc------ccCCCCceeEEEeeecCcEEEEEEEecceEEEEE
Q 027466 171 DGSAKSHELSLAYDQ----------------YS------LKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 171 ~Gs~~SH~Maivf~~----------------~g------L~~l~~P~VlQeFINH~gvlfKVYViG~~~~v~~ 221 (223)
. -|...|-|.. ++ ...-+...++||||..+|.=.||||||+.+...+
T Consensus 156 s----dhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~~~vr~~~~~i~QEFI~~~G~DIRv~vVG~~vv~Am 224 (330)
T 3t7a_A 156 E----DHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPESNVRKTGSYIYEEFMPTDGTDVKVYTVGPDYAHAE 224 (330)
T ss_dssp T----CCCCEEECCGGGTCCEEEEEEEETTEEEEEESCCSCCSSSCEEEEECCCCSSEEEEEEEESTTCEEEE
T ss_pred c----cCcceeecccccCCchhhhhhhhCCcccccChhhhhccCCcEEEEeccCCCCceEEEEEECCEEEEEE
Confidence 2 3555555542 12 1122458999999999999999999999987654
No 5
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.81 E-value=7.5e-08 Score=82.57 Aligned_cols=150 Identities=14% Similarity=0.116 Sum_probs=107.1
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCCC---CCCeeEEEeccCC---h--HHHHHHHHHHHhCCCeEEe-CChhhHHhhcCHHH
Q 027466 48 KLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTG---K--EWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQS 118 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~~---QgpfDvILHKltd---~--~~~~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~ 118 (223)
.+...+++.|++.+.+|.+....+ ...+|+|+..+.+ + .+...++ .. .+.++ .++++++...|+..
T Consensus 25 ~l~~al~~~G~~v~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~e~~~~~~~~e----~~-g~~~~g~~~~~~~~~~dK~~ 99 (306)
T 1iow_A 25 AVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLE----LM-GLPYTGSGVMASALSMDKLR 99 (306)
T ss_dssp HHHHHHHHTTCEEEEECTTTSCGGGTTTTTEEEEEECCCSTTTSSSHHHHHHH----HH-TCCBSSCCHHHHHHHHCHHH
T ss_pred HHHHHHHHCCCeEEEEecCchHHHHhhccCCCEEEEcCCCCCCcchHHHHHHH----Hc-CCCccCCCHHHHHHHcCHHH
Confidence 466778899999999999743222 2478999877632 1 2322233 22 45555 78999999999999
Q ss_pred HHHHHHhccccCCCCcccCCceEEEccCCCCchH-------HHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-
Q 027466 119 MLQCVADMNLSNSYGKVDVPRQLVIERDASSIPD-------VVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK- 190 (223)
Q Consensus 119 ~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~-------~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~- 190 (223)
+.+.+++. .+.+|++..+++. +..+ .. ...+.||+|+||....|+ ..+.++.+.+.|..
T Consensus 100 ~~~~l~~~-------gi~~p~~~~~~~~--~~~~~~~~~~~~~-~~~~~~p~vvKP~~g~~~---~gv~~v~~~~el~~~ 166 (306)
T 1iow_A 100 SKLLWQGA-------GLPVAPWVALTRA--EFEKGLSDKQLAE-ISALGLPVIVKPSREGSS---VGMSKVVAENALQDA 166 (306)
T ss_dssp HHHHHHHT-------TCCBCCEEEEEHH--HHHHCCCTHHHHH-HHTTCSSEEEEETTCCTT---TTCEEESSGGGHHHH
T ss_pred HHHHHHHC-------CCCCCCeEEEchh--hhhccchhhhhhH-HhccCCCEEEEeCCCCCC---CCEEEeCCHHHHHHH
Confidence 99998863 4778999988633 2222 01 135789999999987765 44677888877643
Q ss_pred ------CCCceeEEEeeecCcEEEEEEEecceE
Q 027466 191 ------LEPPLVLQEFVNHGMQMAFGYLADIHY 217 (223)
Q Consensus 191 ------l~~P~VlQeFINH~gvlfKVYViG~~~ 217 (223)
...++++||||+ |.-|-|.++|+.+
T Consensus 167 ~~~~~~~~~~~lvee~i~--g~e~~v~~~~g~~ 197 (306)
T 1iow_A 167 LRLAFQHDEEVLIEKWLS--GPEFTVAILGEEI 197 (306)
T ss_dssp HHHHTTTCSEEEEEECCC--CCEEEEEEETTEE
T ss_pred HHHHHhhCCCEEEEeCcC--CEEEEEEEECCCc
Confidence 257999999998 6789999998864
No 6
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.79 E-value=2.2e-08 Score=86.70 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=108.0
Q ss_pred HHhHHHhcCcEEEEeeCCCC---CCCCCCeeEEEeccCChHH-HHHHHHHHHhCCCeEEeCC-hhhHHhhcCHHHHHHHH
Q 027466 49 LEGLARNKGILFVAIDQNRP---LSDQGPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCV 123 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~p---l~~QgpfDvILHKltd~~~-~~~lq~y~~~hP~v~VIDP-~~~i~~L~dR~~~~~~l 123 (223)
+...+++.|++.+.+|.+.+ +.....+|+++.-+.+... ...++.+.+.. .+.++-| +++++...|+..+.+.+
T Consensus 27 v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~~~~~~ge~~~~~~~le~~-gi~~~g~~~~~~~~~~dK~~~~~~l 105 (307)
T 3r5x_A 27 MIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDGTVQGTLESL-GIPYSGSNMLSSGICMDKNISKKIL 105 (307)
T ss_dssp HHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEECCCSHHHHSSHHHHHHHHH-TCCBSSSCHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEeCCCCCCcHHHHHHHHHHc-CCCeeCcCHHHHHHHcCHHHHHHHH
Confidence 55566788999999999843 3333588999998865421 11233333332 5667755 89999999999999998
Q ss_pred HhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccCC-------CCcee
Q 027466 124 ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLV 196 (223)
Q Consensus 124 ~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l-------~~P~V 196 (223)
++. .+.+|+++.+++. ++..... ...+.||+|+||....|+ ..+.++.+++.|.+. ..+++
T Consensus 106 ~~~-------Gip~p~~~~~~~~-~~~~~~~-~~~~~~P~vvKP~~~~~s---~Gv~~v~~~~el~~~~~~~~~~~~~~l 173 (307)
T 3r5x_A 106 RYE-------GIETPDWIELTKM-EDLNFDE-LDKLGFPLVVKPNSGGSS---VGVKIVYDKDELISMLETVFEWDSEVV 173 (307)
T ss_dssp HHT-------TCCCCCEEEEESS-SCCCHHH-HHHHCSSEEEEECC-------CCCEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred HHC-------CCCCCCEEEEeCh-hhhhHHH-HHhcCCCEEEEeCCCCCC---CCEEEeCCHHHHHHHHHHHHhcCCCEE
Confidence 863 4789999999643 2322211 124689999999876654 567788898777532 57999
Q ss_pred EEEeeecCcEEEEEEEecceE
Q 027466 197 LQEFVNHGMQMAFGYLADIHY 217 (223)
Q Consensus 197 lQeFINH~gvlfKVYViG~~~ 217 (223)
+||||+ |.=|-|.|+|+.+
T Consensus 174 vee~i~--G~e~~v~v~~g~~ 192 (307)
T 3r5x_A 174 IEKYIK--GEEITCSIFDGKQ 192 (307)
T ss_dssp EEECCC--SEEEEEEEETTEE
T ss_pred EECCcC--CEEEEEEEECCEE
Confidence 999999 6899999998866
No 7
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.72 E-value=2.3e-08 Score=89.20 Aligned_cols=150 Identities=12% Similarity=0.056 Sum_probs=107.7
Q ss_pred HHhHHHhcCcEEEEeeCCCCC--------------------------------------CCCCCeeEEEeccCChHHH-H
Q 027466 49 LEGLARNKGILFVAIDQNRPL--------------------------------------SDQGPFDIVLHKLTGKEWR-Q 89 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~pl--------------------------------------~~QgpfDvILHKltd~~~~-~ 89 (223)
+.+..++.|++.++||.+++- .++.++|+|+.-+.+.... .
T Consensus 27 v~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~lhG~~gedg 106 (346)
T 3se7_A 27 VATHLGTGVFEPFYLGITKSGAWQLCDGPGENWEDGNCRPAVLSPDRSVHGLLVLEQGKYETIRLDLVLPVLHGKLGEDG 106 (346)
T ss_dssp HHHHSCTTTEEEEEEEECTTSCEEEESCSSSSSSSSCCEEEEECCCTTTCEEEEEETTEEEEEECSEEEECCCSTTTTSS
T ss_pred HHHHhcccCCEEEEEEECCCCCEEeccchhhhhcccccccceeccCccCccceecccccccccCCCEEEEccCCCCCCCh
Confidence 444456779999999987652 0123579998888654211 2
Q ss_pred HHHHHHHhCCCeEEeCC-hhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeee
Q 027466 90 ILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPL 168 (223)
Q Consensus 90 ~lq~y~~~hP~v~VIDP-~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kpl 168 (223)
.+|.+.+.. .+.++-| +.++...+|+..+.+.+++. .+.+|+++.+++.... ....+.||+|+||.
T Consensus 107 ~iq~~le~~-gip~~g~~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~-----~~~~lg~PvvvKP~ 173 (346)
T 3se7_A 107 AIQGLLELS-GIPYVGCDIQSSALCMDKSLTYLVARSA-------GIATPNFWTVTADEKI-----PTDQLTYPVFVKPA 173 (346)
T ss_dssp HHHHHHHHH-CCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEEETTSCC-----CTTTCCSSEEEEES
T ss_pred HHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHHHHc-------CcCcCCEEEEcCcHHH-----HHHhcCCCEEEEeC
Confidence 344444443 5666655 88999999999999998864 5789999999643311 12468999999998
Q ss_pred cccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecce
Q 027466 169 VADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 169 vA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
...| |.-+.++.+++.|.. ...++++||||+ |.=|-|.|+|+.
T Consensus 174 ~~~~---s~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~--G~E~~v~vl~~~ 223 (346)
T 3se7_A 174 RSGS---SFGVSKVAREEDLQGAVEAAREYDSKVLIEEAVI--GTEIGCAVMGNG 223 (346)
T ss_dssp SCCT---TTTCEEECSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEEET
T ss_pred CCCC---CcCEEEECCHHHHHHHHHHHHhCCCcEEEEeCcC--CEEEEEEEEecC
Confidence 8765 455778999877743 357999999999 789999999883
No 8
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.67 E-value=2.5e-07 Score=81.05 Aligned_cols=176 Identities=13% Similarity=0.016 Sum_probs=114.8
Q ss_pred cEEEEEEeC-hh--hhhccch-hhHHhHHHhcCcEEEEeeCCCCCCC---CCCeeEEEeccCChH-HHHHHHHHHHhCCC
Q 027466 29 LVVVGYALT-SK--KTKSFLQ-PKLEGLARNKGILFVAIDQNRPLSD---QGPFDIVLHKLTGKE-WRQILEEYRQTHPE 100 (223)
Q Consensus 29 ~~~VGy~l~-~k--K~~~f~~-~~~~~~~~~~gi~fv~iD~~~pl~~---QgpfDvILHKltd~~-~~~~lq~y~~~hP~ 100 (223)
..+|+..+- .+ +.=|+.. ..+....++.|++.+.+|.+..... ...+|+++--+.+.. ....++.+.+.. .
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~ge~~~~~~~le~~-g 91 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYGENGQIQGALDFY-G 91 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGGTSSHHHHHHHHH-T
T ss_pred cceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCCchHHHHHHHHHc-C
Confidence 345666653 12 2222222 2355666889999999996543222 257899987665431 012344444444 5
Q ss_pred eEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHH--hcCCccceEEeeecccCCCCCe
Q 027466 101 VTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL--KAGLTLPLVAKPLVADGSAKSH 177 (223)
Q Consensus 101 v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~--~agl~fP~I~KplvA~Gs~~SH 177 (223)
+.++ .++.++....|+..+.+.+++. .+.+|+++.+++. ++..+... ...+.||+|+||....|+ .
T Consensus 92 ip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~~~~~g~PvvvKP~~~~~s---~ 160 (317)
T 4eg0_A 92 IRYTGSGVLGSALGLDKFRTKLVWQQT-------GVPTPPFETVMRG-DDYAARATDIVAKLGLPLFVKPASEGSS---V 160 (317)
T ss_dssp CEESSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETT-SCHHHHHHHHHHHHCSCEEEEECC--------
T ss_pred CCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEECc-hhHHHHHHHHHHhcCCCEEEEeCCCCCC---C
Confidence 7776 6779999999999999998864 5789999998643 23332221 134789999999887655 4
Q ss_pred eEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecceE
Q 027466 178 ELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIHY 217 (223)
Q Consensus 178 ~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~~ 217 (223)
-+.++.+++.|.+ ...++++||||+. |.=|-|.|+||.+
T Consensus 161 Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~i~~-G~E~~v~vl~~~~ 206 (317)
T 4eg0_A 161 AVLKVKTADALPAALSEAATHDKIVIVEKSIEG-GGEYTACIAGDLD 206 (317)
T ss_dssp CCEEECSGGGHHHHHHHHTTTCSEEEEEECCCS-SEEEEEEEETTCC
T ss_pred CEEEECCHHHHHHHHHHHHhCCCeEEEEcCCCC-CcEEEEEEECCcc
Confidence 5568899887742 3568999999997 6889999999864
No 9
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.40 E-value=5.3e-06 Score=74.73 Aligned_cols=155 Identities=9% Similarity=0.090 Sum_probs=99.6
Q ss_pred hhhHHhHHHhcCcEEEEeeCCCCCCCCCCee-EEEeccCChHHH-H-----------------HHHHHHHhCCCeEEeCC
Q 027466 46 QPKLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEWR-Q-----------------ILEEYRQTHPEVTVLDP 106 (223)
Q Consensus 46 ~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfD-vILHKltd~~~~-~-----------------~lq~y~~~hP~v~VIDP 106 (223)
...+...|++.|+..+-+|.+..-....-.| .+.-...|.+.. + .+-++.+++. + +--+
T Consensus 26 g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e~~~~~~~~~l~~~g-~-~~~~ 103 (389)
T 3q2o_A 26 GRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFENIDYRCLQWLEKHA-Y-LPQG 103 (389)
T ss_dssp HHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCCCCCHHHHHHHHHHS-C-CTTC
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeeccccccHHHHHHHHhhC-c-cCCC
Confidence 3456677889999999999864322211122 222223332110 0 1112222222 1 4467
Q ss_pred hhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccc
Q 027466 107 PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 186 (223)
Q Consensus 107 ~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~ 186 (223)
+++++...||..+.+.++++ .+.+|++..+++ .+++.+... .+.||+|+||... ..++.-|.++.+++
T Consensus 104 ~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~~--~~~g~Gv~~v~~~~ 171 (389)
T 3q2o_A 104 SQLLSKTQNRFTEKNAIEKA-------GLPVATYRLVQN-QEQLTEAIA--ELSYPSVLKTTTG--GYDGKGQVVLRSEA 171 (389)
T ss_dssp SHHHHHTTSHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEESSC--CSSSCCEEEESSGG
T ss_pred HHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--hcCCCEEEEeCCC--CCCCCCeEEECCHH
Confidence 78999999999999998864 478899998853 223233332 3679999999654 32357899999998
Q ss_pred cccCC-----CCceeEEEeeecCcEEEEEEEecc
Q 027466 187 SLKKL-----EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 187 gL~~l-----~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
.|.+. ..|+++||||+ |+.=|-|.+++|
T Consensus 172 el~~~~~~~~~~~~lvEe~i~-g~~E~~v~~~~~ 204 (389)
T 3q2o_A 172 DVDEARKLANAAECILEKWVP-FEKEVSVIVIRS 204 (389)
T ss_dssp GHHHHHHHHHHSCEEEEECCC-CSEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEeccc-CceEEEEEEEEc
Confidence 87543 46999999999 557778888865
No 10
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=98.37 E-value=2.7e-06 Score=76.48 Aligned_cols=129 Identities=13% Similarity=0.119 Sum_probs=89.3
Q ss_pred CeeEEEeccCCh------HHHHHHHHHHHhCCCeEEeCChhhHHhhcCH----HHHHHHHHhccccCCCCcccCCceEEE
Q 027466 74 PFDIVLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVI 143 (223)
Q Consensus 74 pfDvILHKltd~------~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR----~~~~~~l~~l~~~~~~~~i~~P~~v~i 143 (223)
.+|++|=+.... .|+..+. +.+. -.+.+++++.+|....|+ ..+++.+..+.. ..+..|.....
T Consensus 68 ~~D~vi~R~~~~~~~~~~~~r~vl~-~le~-~GvpviN~~~sI~~~~DK~~~~~~~~~~l~~~gi----~~~P~~~~~~~ 141 (309)
T 1i7n_A 68 RPDFVLIRQHAFGMAENEDFRHLVI-GMQY-AGLPSINSLESIYNFCDKPWVFAQMVAIFKTLGG----EKFPLIEQTYY 141 (309)
T ss_dssp CCSEEEECSCCCCSSTTCCCHHHHH-HHHH-TTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred cCCEEEEecccccccccchHHHHHH-HHHH-CCccccCCHHHHHHhCCccHHHHHHHHHHHhCCC----CCCCCCCEEee
Confidence 478888777543 2453344 3333 389999999999999999 566666665432 23443333333
Q ss_pred ccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccCC-------CCceeEEEeeecCcEEEEEEEecce
Q 027466 144 ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 144 ~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l-------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
. + ..+.+. .+.||+|+||+.++ ...-+.++-+++.+.++ ...+++||||. .|.=+.|||||++
T Consensus 142 ~-~---~~~~~~--~~g~PvVvK~~~Gs---~G~GV~lv~~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VvGg~ 211 (309)
T 1i7n_A 142 P-N---HREMLT--LPTFPVVVKIGHAH---SGMGKVKVENHYDFQDIASVVALTQTYATAEPFID-AKYDIRVQKIGNN 211 (309)
T ss_dssp S-S---GGGGSS--CCCSSEEEEESSCS---TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-C---hhhhhh--ccCCCEEEEeCCCC---ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeecC-CCceEEEEEECCE
Confidence 2 2 122222 36799999999854 45678999998877432 56889999999 7899999999999
Q ss_pred EE
Q 027466 217 YI 218 (223)
Q Consensus 217 ~~ 218 (223)
+.
T Consensus 212 v~ 213 (309)
T 1i7n_A 212 YK 213 (309)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 11
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=98.26 E-value=7.8e-06 Score=74.66 Aligned_cols=130 Identities=12% Similarity=0.140 Sum_probs=90.8
Q ss_pred CeeEEEeccCCh------HHHHHHHHHHHhCCCeEEeCChhhHHhhcCH----HHHHHHHHhccccCCCCcccCCceEEE
Q 027466 74 PFDIVLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVI 143 (223)
Q Consensus 74 pfDvILHKltd~------~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR----~~~~~~l~~l~~~~~~~~i~~P~~v~i 143 (223)
.+|++|=+.... .|+..+. +.+. -.+.+|+++++|....|+ ..+++.+..+.. ..+..|.....
T Consensus 85 ~~D~vi~R~~~~~~~~~~~yr~vl~-~le~-~GvpviN~~~sI~~~~DK~~v~~~~l~~l~~~gi----~~~P~~~~t~~ 158 (344)
T 2p0a_A 85 KPDFILVRQHAYSMALGEDYRSLVI-GLQY-GGLPAVNSLYSVYNFCSKPWVFSQLIKIFHSLGP----EKFPLVEQTFF 158 (344)
T ss_dssp CCSEEEECSCSEEGGGTEECHHHHH-HHHH-TTCCEESCHHHHHHTTCHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHHHHH-HHHH-CCceecCCHHHHHhhCCchHHHHHHHHHHHHCCC----CCCCCCCEEec
Confidence 579888877653 2453333 3333 389999999999999999 666776665432 23443333333
Q ss_pred ccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecce
Q 027466 144 ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 144 ~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
. +..+. + ..+.||+|+||+.++ ...-+.++-+++.+.+ ....+++||||+ .+.=+.|||||++
T Consensus 159 ~-~~~~~---~--~~~g~PvVvK~~~Gs---~G~GV~lve~~~~~~~~~~~~~~~~~~~~vQefI~-~g~DiRv~VVGg~ 228 (344)
T 2p0a_A 159 P-NHKPM---V--TAPHFPVVVKLGHAH---AGMGKIKVENQLDFQDITSVVAMAKTYATTEAFID-SKYDIRIQKIGSN 228 (344)
T ss_dssp S-SSTTC---C--CCSSSSEEEEESSCC---TTTTEEEECSHHHHHHHHHHHHHHTCCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-chhhh---h--hccCCCEEEEeCCCC---ceeCeEEECCHHHHHHHHHHHhccCCeEEEEeccC-CCccEEEEEECCE
Confidence 2 22222 2 236799999999854 4566999999987753 256788999999 7899999999999
Q ss_pred EEE
Q 027466 217 YII 219 (223)
Q Consensus 217 ~~v 219 (223)
+..
T Consensus 229 vva 231 (344)
T 2p0a_A 229 YKA 231 (344)
T ss_dssp EEE
T ss_pred EEE
Confidence 853
No 12
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=98.24 E-value=3.9e-06 Score=71.64 Aligned_cols=153 Identities=12% Similarity=0.102 Sum_probs=99.3
Q ss_pred hHHhHHHhcCcEEEEeeCCCCC-CC-----------------------------CCCeeEEEeccCC---hHH--HHHHH
Q 027466 48 KLEGLARNKGILFVAIDQNRPL-SD-----------------------------QGPFDIVLHKLTG---KEW--RQILE 92 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl-~~-----------------------------QgpfDvILHKltd---~~~--~~~lq 92 (223)
.+...+++.|+.++.+|.+..- .. -..+|+|+-.... .++ ...+.
T Consensus 23 ~l~~a~~~~G~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~ 102 (316)
T 1gsa_A 23 AMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL 102 (316)
T ss_dssp HHHHHHHHTTCEEEEECGGGEEEETTEEEEEEEEEEECSCSSCCEEEEEEEEEEGGGSSEEEECCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEEchhHeEEECCeEEEEEeeeEeccCcccceeccCccccccccCCEEEEecCCCCchhhHHHHHHH
Confidence 4667788899999999875210 00 0136777765532 222 22333
Q ss_pred HHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccC
Q 027466 93 EYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADG 172 (223)
Q Consensus 93 ~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~G 172 (223)
+..+.. .+.++.|+++++...|+..+.+.++ .+|++..++ +.+++.+.+.+.| |+|+||....|
T Consensus 103 ~~l~~~-g~~~~~~~~~~~~~~dK~~~~~~l~-----------~~P~t~~~~-~~~~~~~~~~~~~---p~vvKP~~g~~ 166 (316)
T 1gsa_A 103 ERAEEK-GTLIVNKPQSLRDCNEKLFTAWFSD-----------LTPETLVTR-NKAQLKAFWEKHS---DIILKPLDGMG 166 (316)
T ss_dssp HHHHHT-TCEEESCHHHHHHCCTTGGGGGGTT-----------TSCCEEEES-CHHHHHHHHHHHS---SEEEECSSCCT
T ss_pred HHHHHc-CCeEecCHHHHHhhhhHHHHHhhhh-----------cCCCeEEeC-CHHHHHHHHHHcC---CEEEEECCCCC
Confidence 333343 4667899999999999988776543 679998885 2223333344333 99999998665
Q ss_pred CCCCeeEEEEe-ccccccC-------C-CCceeEEEeeecC-cEEEEEEEecceEEE
Q 027466 173 SAKSHELSLAY-DQYSLKK-------L-EPPLVLQEFVNHG-MQMAFGYLADIHYII 219 (223)
Q Consensus 173 s~~SH~Maivf-~~~gL~~-------l-~~P~VlQeFINH~-gvlfKVYViG~~~~v 219 (223)
+ ..+.++. +++.|.. . ..|+++||||+-. +.=+-++++|+.+..
T Consensus 167 g---~Gv~~v~~~~~~l~~~~~~~~~~~~~~~lvqe~i~~~~~~~~~v~~~~g~~~~ 220 (316)
T 1gsa_A 167 G---ASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVP 220 (316)
T ss_dssp T---TTCEEECTTCTTHHHHHHHHTTTTTSCEEEEECCGGGGGCEEEEEEETTEECS
T ss_pred c---ccEEEecCChHHHHHHHHHHHhcCCceEEEecccCCCCCCCEEEEEECCEEee
Confidence 5 4466776 6665532 2 3699999999963 677888999887643
No 13
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.22 E-value=4.9e-06 Score=74.42 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=87.0
Q ss_pred CCeeEEEecc---CChHHHHHHHHHHHhCCCeEEeCC-hhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC
Q 027466 73 GPFDIVLHKL---TGKEWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS 148 (223)
Q Consensus 73 gpfDvILHKl---td~~~~~~lq~y~~~hP~v~VIDP-~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~ 148 (223)
..+|+|+--+ .++. ..++...+.. .+.++-| +.++....|+..+.+.+++. .+.+|+++.+++...
T Consensus 86 ~~~D~v~~~~~g~~~ed--~~~~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~ 155 (364)
T 2i87_A 86 QPYDAVFPLLHGPNGED--GTIQGLFEVL-DVPYVGNGVLSAASSMDKLVMKQLFEHR-------GLPQLPYISFLRSEY 155 (364)
T ss_dssp SBCSEEEEECCCSSSCT--THHHHHHHHH-TCCBSSCCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEEEEHHHH
T ss_pred cCCCEEEEeCCCCCCcC--HHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEechhh
Confidence 3678888544 2221 1123333322 4666654 89999999999999998864 477899998853210
Q ss_pred ------CchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecc
Q 027466 149 ------SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 149 ------~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
++.+.. ..+.||+|+||....|+ ..+.++.+++.|.. ...++++||||+ |.=|-|.|+|+
T Consensus 156 ~~~~~~~~~~~~--~~~g~PvvvKP~~g~~s---~Gv~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~ 228 (364)
T 2i87_A 156 EKYEHNILKLVN--DKLNYPVFVKPANLGSS---VGISKCNNEAELKEGIKEAFQFDRKLVIEQGVN--AREIEVAVLGN 228 (364)
T ss_dssp HHHHHHHHHHHH--HHCCSSEEEEESSCSSC---TTCEEESSHHHHHHHHHHHHTTCSEEEEEECCC--CEEEEEEEEES
T ss_pred cccchhHHHHHH--HhcCCCEEEEeCCCCCC---CCEEEECCHHHHHHHHHHHHhcCCeEEEEeCcc--CeEEEEEEEcC
Confidence 111111 24789999999987664 46788999877743 357999999998 68899999987
Q ss_pred e
Q 027466 216 H 216 (223)
Q Consensus 216 ~ 216 (223)
.
T Consensus 229 ~ 229 (364)
T 2i87_A 229 D 229 (364)
T ss_dssp S
T ss_pred C
Confidence 4
No 14
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.16 E-value=5.4e-05 Score=68.21 Aligned_cols=151 Identities=14% Similarity=0.118 Sum_probs=93.9
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCCCCCCCee-EEEeccCChHHH-------------------HHHHHHHHhCCCeEEeCC
Q 027466 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFD-IVLHKLTGKEWR-------------------QILEEYRQTHPEVTVLDP 106 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl~~QgpfD-vILHKltd~~~~-------------------~~lq~y~~~hP~v~VIDP 106 (223)
..+...|++.|+..+-+|.+..-....-.| .+.--.+|.+.. +.+.+..+.. .+.-+
T Consensus 25 ~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~E~~~~~~l~~l~~~~---~v~p~ 101 (377)
T 3orq_A 25 KMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEFENISAQQLKLLCEKY---NIPQG 101 (377)
T ss_dssp HHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESSTTSCHHHHHHHHHHS---CCTTT
T ss_pred HHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecccccCHHHHHHHhhhc---CCCCC
Confidence 346667888999999999864321111111 222223332211 1122222221 23345
Q ss_pred hhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccc
Q 027466 107 PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 186 (223)
Q Consensus 107 ~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~ 186 (223)
+++++...||..+.+.++++ .+.+|++..+++ .+++.+..+ .+.||+|+||.... .++.-+.++.+++
T Consensus 102 ~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~gg--~~g~Gv~~v~~~~ 169 (377)
T 3orq_A 102 YQAIQLLQDRLTEKETLKSA-------GTKVVPFISVKE-STDIDKAIE--TLGYPFIVKTRFGG--YDGKGQVLINNEK 169 (377)
T ss_dssp THHHHHHHSHHHHHHHHHHT-------TCCBCCEEEECS-STHHHHHHH--HTCSSEEEEESSSC--CTTTTEEEECSTT
T ss_pred HHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--HcCCCEEEEeCCCC--CCCCCeEEECCHH
Confidence 68888899999998888764 478899998853 334333333 36799999997642 2456778999988
Q ss_pred cccCC-----CCceeEEEeeecCcEEEEEEEe
Q 027466 187 SLKKL-----EPPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 187 gL~~l-----~~P~VlQeFINH~gvlfKVYVi 213 (223)
.|.+. ..++++||||+ +..=|-|.++
T Consensus 170 el~~a~~~~~~~~~ivEe~i~-g~~E~sv~~~ 200 (377)
T 3orq_A 170 DLQEGFKLIETSECVAEKYLN-IKKEVSLTVT 200 (377)
T ss_dssp SHHHHHHHHTTSCEEEEECCC-EEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEccCC-CCEEEEEEEE
Confidence 87532 47999999998 3355666676
No 15
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=98.15 E-value=1.4e-05 Score=74.90 Aligned_cols=129 Identities=12% Similarity=0.123 Sum_probs=89.3
Q ss_pred CeeEEEeccCCh------HHHHHHHHHHHhCCCeEEeCChhhHHhhcCH----HHHHHHHHhccccCCCCcccCCceEEE
Q 027466 74 PFDIVLHKLTGK------EWRQILEEYRQTHPEVTVLDPPYAIQHLHNR----QSMLQCVADMNLSNSYGKVDVPRQLVI 143 (223)
Q Consensus 74 pfDvILHKltd~------~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR----~~~~~~l~~l~~~~~~~~i~~P~~v~i 143 (223)
.+|++|=+.... .|+..+. +.+. -.+.+|+++++|....|+ ..+++.+..+.. ..+..|.+...
T Consensus 180 ~~DaviiR~~~~~~~~~~~yr~vlr-~lE~-~GvpviNs~~sI~~~~DK~~vf~~~l~ll~~~gi----~~iP~t~~t~~ 253 (422)
T 1pk8_A 180 KPDFVLIRQHAFSMARNGDYRSLVI-GLQY-AGIPSVNSLHSVYNFCDKPWVFAQMVRLHKKLGT----EEFPLIDQTFY 253 (422)
T ss_dssp CCSEEEECSCSBCSSTTCBCHHHHH-HHHH-TTCCEESCHHHHHHTSSHHHHHHHHHHHHHHHCT----TTSCBCCCEEE
T ss_pred CCCEEEEeccccccccchhHHHHHH-HHHH-CCccccCCHHHHHHhCCccHHHHHHHHHHHhCCC----CCCCCCceEec
Confidence 478888777543 2554444 3333 389999999999999999 556666665432 13343333333
Q ss_pred ccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccCC-------CCceeEEEeeecCcEEEEEEEecce
Q 027466 144 ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL-------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 144 ~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l-------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
. +. .+.+ ..+.||+|+||+..+ ...-+.++-+++.+.++ ...+++||||+ .+.=+.|||||++
T Consensus 254 ~-~~---~~~i--~~~g~PvVvKp~~GS---~G~GV~lve~~~~l~~ii~~~~~~~~~~~vQEfI~-~g~DIRv~VVGg~ 323 (422)
T 1pk8_A 254 P-NH---KEML--SSTTYPVVVKMGHAH---SGMGKVKVDNQHDFQDIASVVALTKTYATAEPFID-AKYDVRVQKIGQN 323 (422)
T ss_dssp S-SG---GGCC--CCSSSSEEEEESSCC---TTTTEEEECSHHHHHHHHHHHHHHTSCEEEEECCC-EEEEEEEEEETTE
T ss_pred C-ch---hhhh--hccCCCEEEEeCCCC---ceeCeEEeCCHHHHHHHHHHHhccCceEEEEeecC-CCceEEEEEECCE
Confidence 2 21 1122 236799999999854 45679999999877532 56788999999 7899999999999
Q ss_pred EE
Q 027466 217 YI 218 (223)
Q Consensus 217 ~~ 218 (223)
+.
T Consensus 324 vv 325 (422)
T 1pk8_A 324 YK 325 (422)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 16
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.15 E-value=2.6e-05 Score=71.11 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=98.8
Q ss_pred hhhHHhHHHhcCcEEEEeeCCCCCCC-CC--CeeEEEeccCChHHHHHHHHHHHhCC--------------------CeE
Q 027466 46 QPKLEGLARNKGILFVAIDQNRPLSD-QG--PFDIVLHKLTGKEWRQILEEYRQTHP--------------------EVT 102 (223)
Q Consensus 46 ~~~~~~~~~~~gi~fv~iD~~~pl~~-Qg--pfDvILHKltd~~~~~~lq~y~~~hP--------------------~v~ 102 (223)
...+...|++.|+..+.+| +..-.. |- .+..+.-..+|.. .++++.++ + .+.
T Consensus 36 g~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~---~l~~~a~~-~d~i~~e~e~~~~~~l~~l~~g~~ 110 (403)
T 3k5i_A 36 GRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKERE---AVRQLAKT-CDVVTAEIEHVDTYALEEVASEVK 110 (403)
T ss_dssp HHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHH---HHHHHHTT-CSEEEESSSCSCHHHHHHHTTTSE
T ss_pred HHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHH---HHHHHHHh-CCEEEECCCCCCHHHHHHHHcCCc
Confidence 3456677888999999999 532111 21 1233444444542 22222222 2 345
Q ss_pred EeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEcc-CCCCchHHHHhcCCccceEEeeecccCCCCCeeEEE
Q 027466 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (223)
Q Consensus 103 VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~-~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Mai 181 (223)
+.-++++++...||..+.+.++++ .+.+|++..++. +.+++.+... .+.||+|+||.... ..+.-+.+
T Consensus 111 v~p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~~~~~~--~~g~P~VvKp~~gg--~~g~Gv~~ 179 (403)
T 3k5i_A 111 IEPSWQAIRTIQNKFNQKEHLRKY-------GIPMAEHRELVENTPAELAKVGE--QLGYPLMLKSKTMA--YDGRGNFR 179 (403)
T ss_dssp ESSCHHHHHHHTSHHHHHHHHHTT-------TCCBCCEEEESSCCHHHHHHHHH--HHCSSEEEEESSSC--CTTTTEEE
T ss_pred cCcCHHHHHHhcCHHHHHHHHHHC-------CcCCCCEEEEcCCCHHHHHHHHH--HhCCCEEEEeCCCC--cCCCCEEE
Confidence 667889999999999999888753 588999999863 2223222332 36799999997542 23557888
Q ss_pred EeccccccC----C-CCceeEEEeeecCcEEEEEEEecc
Q 027466 182 AYDQYSLKK----L-EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 182 vf~~~gL~~----l-~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
+.+++.|.+ + ..++++||||+. +.=+=|.+++|
T Consensus 180 v~~~~el~~a~~~~~~~~~lvEe~i~~-~~E~sv~v~~~ 217 (403)
T 3k5i_A 180 VNSQDDIPEALEALKDRPLYAEKWAYF-KMELAVIVVKT 217 (403)
T ss_dssp ECSTTSHHHHHHHTTTSCEEEEECCCE-EEEEEEEEEEC
T ss_pred ECCHHHHHHHHHhcCCCcEEEecCCCC-CeEEEEEEEEc
Confidence 999887743 2 469999999973 45566667665
No 17
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.09 E-value=2.7e-05 Score=70.30 Aligned_cols=130 Identities=13% Similarity=0.092 Sum_probs=88.4
Q ss_pred CeeEEEeccCChHH-HHHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC--C
Q 027466 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--S 149 (223)
Q Consensus 74 pfDvILHKltd~~~-~~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~--~ 149 (223)
.+|+|+--+.+..- ...++...+.. .+.++ -++.++....|+..+.+.+++. .+.+|+++.+++..+ .
T Consensus 93 ~~D~v~~~~~g~~gedg~~~~lle~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 164 (377)
T 1ehi_A 93 DFDIFFPVVHGNLGEDGTLQGLFKLL-DKPYVGAPLRGHAVSFDKALTKELLTVN-------GIRNTKYIVVDPESANNW 164 (377)
T ss_dssp CCSEEEEECCSTTTSSSHHHHHHHHT-TCCBSSCCHHHHHHHHSHHHHHHHHHTT-------TCCCCCEEEECTTGGGGC
T ss_pred CCCEEEEecCCCCCcCHHHHHHHHHc-CCCEeCcCHHHHHHHcCHHHHHHHHHHc-------CCCCCCEEEEeccccchH
Confidence 67888866533210 01244444443 56666 7789999999999999998753 578999999864311 1
Q ss_pred chHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecce
Q 027466 150 IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 150 ~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
....+. ..+.||+|+||....|+ .-+.++.+++.|.. ...++++||||+ |..=|-|.|+||.
T Consensus 165 ~~~~~~-~~~g~PvvVKP~~~~~s---~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~ 233 (377)
T 1ehi_A 165 SWDKIV-AELGNIVFVKAANQGSS---VGISRVTNAEEYTEALSDSFQYDYKVLIEEAVN-GARELEVGVIGND 233 (377)
T ss_dssp CHHHHH-HHHCSCEEEEESSCCTT---TTEEEECSHHHHHHHHHHHTTTCSCEEEEECCC-CSCEEEEEEEESS
T ss_pred HHHHHH-HhcCCCEEEEeCCCCCC---cCEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCC-CCceEEEEEEcCC
Confidence 122221 23679999999987655 45788999877642 356999999997 2266788888874
No 18
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.03 E-value=3.3e-05 Score=68.30 Aligned_cols=100 Identities=12% Similarity=0.090 Sum_probs=77.3
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
.+.++ -++.++....|+..+.+.+++. .+.+|+++.+++.. +.. . ..+.||+|+||....|+. -
T Consensus 116 gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~-~~~-~---~~~~~PvvvKP~~~~~s~---G 180 (343)
T 1e4e_A 116 GIPFVGCDIQSSAICMDKSLTYIVAKNA-------GIATPAFWVINKDD-RPV-A---ATFTYPVFVKPARSGSSF---G 180 (343)
T ss_dssp TCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCBCCCEEEECTTC-CCC-G---GGSCSCEEEEESSCCTTT---T
T ss_pred CCCccCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCEEEEechh-hhh-h---hccCCCEEEEeCCCCCCC---C
Confidence 45655 4588999999999999998864 47789999986432 221 1 457899999999877654 5
Q ss_pred EEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecce
Q 027466 179 LSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 179 Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
+.++.+++.|.. ...++++||||. |.-|-|.|+|+.
T Consensus 181 v~~v~~~~el~~a~~~~~~~~~~~lvEe~I~--G~E~~v~vl~~~ 223 (343)
T 1e4e_A 181 VKKVNSADELDYAIESARQYDSKILIEQAVS--GCEVGCAVLGNS 223 (343)
T ss_dssp CEEECSGGGHHHHHHHHTTTCSSEEEEECCC--SEEEEEEEEEET
T ss_pred EEEeCCHHHHHHHHHHHHhcCCcEEEEeCcC--CeEEEEEEEeCC
Confidence 788999887743 357999999997 788999999875
No 19
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.00 E-value=1.5e-05 Score=79.29 Aligned_cols=142 Identities=13% Similarity=0.106 Sum_probs=101.4
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCCCC---CCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHHHHHH
Q 027466 48 KLEGLARNKGILFVAIDQNRPLSDQ---GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVA 124 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~~Q---gpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~ 124 (223)
.+.+.|+++|++++.+|.+.++-.. .++|++.. ..+.-.++..++...-|+..+.+.+.
T Consensus 432 ~l~~aA~~~Gi~v~vidp~~~l~~l~~~~~~~~~~~------------------g~itg~~~~~a~~~~~DK~~tk~lL~ 493 (750)
T 3ln6_A 432 LLLFDVIQKGVNFEVLDEQDQFLKLWHNSHIEYVKN------------------GNMTSKDNYIVPLAMANKVVTKKILD 493 (750)
T ss_dssp HHHHHHHHHTCEEEESCSSSCEEEEEETTEEEEEET------------------TTBCTTSCTHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCchHhhhccCCCcEEEec------------------CCeeCCCHHHHHHHHhCHHHHHHHHH
Confidence 4677899999999999998775532 34555432 12345567777877779998888887
Q ss_pred hccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEe---ccccccC-------CCCc
Q 027466 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAY---DQYSLKK-------LEPP 194 (223)
Q Consensus 125 ~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf---~~~gL~~-------l~~P 194 (223)
+. .|.+|++.++++ .++..+.+. ..+.||+|+||....| +.-+.++. +.+.+.+ ...+
T Consensus 494 ~~-------GIPvP~~~~~~~-~~ea~~~~~-~~~g~PvVVKP~~G~~---G~GV~iv~~~~s~eel~~a~~~~~~~~~~ 561 (750)
T 3ln6_A 494 EK-------HFPTPFGDEFTD-RKEALNYFS-QIQDKPIVVKPKSTNF---GLGISIFKTSANLASYEKAIDIAFTEDSA 561 (750)
T ss_dssp HT-------TCCCCCCCCEET-TTTHHHHHH-HSSSSCEEEEETTCCS---SSSCEEESSCCCHHHHHHHHHHHHHHCSE
T ss_pred HC-------CcCCCCEEEECC-HHHHHHHHH-HhcCCcEEEEeCCCCC---CCCEEEEeCCCCHHHHHHHHHHHHhhCCc
Confidence 63 578899998863 334333332 3478999999965443 55788887 5555432 2568
Q ss_pred eeEEEeeecCcEEEEEEEecceEEEEE
Q 027466 195 LVLQEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 195 ~VlQeFINH~gvlfKVYViG~~~~v~~ 221 (223)
+++||||. |.=|-|+|+|+++.-++
T Consensus 562 vlVEefI~--G~E~~v~Vvgg~vvaa~ 586 (750)
T 3ln6_A 562 ILVEEYIE--GTEYRFFVLEGDCIAVL 586 (750)
T ss_dssp EEEEECCC--SEEEEEEEETTEEEEEE
T ss_pred EEEEeccC--CCEEEEEEECCEEEEEE
Confidence 99999998 78999999999886544
No 20
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.99 E-value=0.00012 Score=65.22 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=94.3
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCCC-C--------------------CCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCC
Q 027466 48 KLEGLARNKGILFVAIDQNRPLSD-Q--------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDP 106 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~~-Q--------------------gpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP 106 (223)
.+...+++.|+..+.+|.+..-.. + ..+|+|+--..+.. ..+-++.++. .+.+.-+
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~~--~~~~~~l~~~-gi~~~~~ 91 (380)
T 3ax6_A 15 MMTLEAKKMGFYVIVLDPTPRSPAGQVADEQIVAGFFDSERIEDLVKGSDVTTYDLEHID--VQTLKKLYNE-GYKIHPS 91 (380)
T ss_dssp HHHHHHHHTTCEEEEEESSTTCTTGGGSSEEEECCTTCHHHHHHHHHTCSEEEESCSCSC--HHHHHHHHHT-TCEESSC
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchhhhCceEEECCCCCHHHHHHHHhcCCEEEecccCCC--HHHHHHHHHC-CCeECCC
Confidence 455567788999999998533211 1 12344432111111 1122233332 3445688
Q ss_pred hhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccc
Q 027466 107 PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQY 186 (223)
Q Consensus 107 ~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~ 186 (223)
+++++...|+..+.+.+++. .+.+|++..+++. ++ .+ ..+.||+|+||.... -.|..+.++.+++
T Consensus 92 ~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~~-~~---~~--~~~~~P~vvKp~~~~--y~g~Gv~~v~~~~ 156 (380)
T 3ax6_A 92 PYTLEIIQDKFVQKEFLKKN-------GIPVPEYKLVKDL-ES---DV--REFGFPVVQKARKGG--YDGRGVFIIKNEK 156 (380)
T ss_dssp HHHHHHHHSHHHHHHHHHHT-------TCCCCCEEECSSH-HH---HH--HTTCSSEEEEESCCC-------EEEECSGG
T ss_pred HHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEeCCH-HH---HH--HhcCCCEEEEecCCC--CCCCCeEEECCHH
Confidence 88999999999998888764 4778999888532 11 22 357899999999754 1356678899988
Q ss_pred cccCC-CCceeEEEeeecCcEEEEEEEecc
Q 027466 187 SLKKL-EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 187 gL~~l-~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
.|... +.++++||||+. |.=|-|.+++|
T Consensus 157 el~~~~~~~~lvEe~i~~-g~e~sv~~~~~ 185 (380)
T 3ax6_A 157 DLENAIKGETYLEEFVEI-EKELAVMVARN 185 (380)
T ss_dssp GGGGCCCSSEEEEECCCE-EEEEEEEEEEC
T ss_pred HHHHHhcCCEEEEeccCC-CeeEEEEEEEC
Confidence 87643 479999999986 67788888865
No 21
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=97.98 E-value=4.8e-05 Score=67.57 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=92.3
Q ss_pred HHhHHHhcCcEEEEeeCCCCCC-CC-------------------CCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChh
Q 027466 49 LEGLARNKGILFVAIDQNRPLS-DQ-------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPY 108 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~pl~-~Q-------------------gpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~ 108 (223)
+...+++.|++.+.+|.+..-. .+ ..+|+|+-=..+. ....++...+.. .+--+++
T Consensus 14 ~~~a~~~~G~~v~~~~~~~~~~~~~~a~~~~~~~~d~~~l~~~~~~~d~v~~~~e~~-~~~~~~~l~~~g---~~g~~~~ 89 (369)
T 3aw8_A 14 LALAGYPLGLSFRFLDPSPEACAGQVGELVVGEFLDEGALLRFAEGLALVTYEFENV-PVEAARRLEGRL---PLYPPAK 89 (369)
T ss_dssp HHHHHTTBTCCEEEEESCTTCGGGGTSEEEECCTTCHHHHHHHHTTCSEEEECCTTC-CHHHHHHHHHHS---CBSSCHH
T ss_pred HHHHHHHcCCEEEEEeCCCCChHHHhhceEecCCCCHHHHHHHHhCCCEEEECCCCc-CHHHHHHHHHcC---CcCCCHH
Confidence 4445677788888888653211 01 2356654222221 122223222222 5667788
Q ss_pred hHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeeccc-CCCCCeeEEEEecccc
Q 027466 109 AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD-GSAKSHELSLAYDQYS 187 (223)
Q Consensus 109 ~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~-Gs~~SH~Maivf~~~g 187 (223)
+++...|+..+.+.+++. .+.+|++..+++ .++..+.. ..+.||+|+||.... |+ ..+.++.+++.
T Consensus 90 ~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~--~~~g~P~vvKp~~~~~~g---~Gv~~v~~~~e 156 (369)
T 3aw8_A 90 ALEVAQDRLREKTFFQGL-------GVPTPPFHPVDG-PEDLEEGL--KRVGLPALLKTRRGGYDG---KGQALVRTEEE 156 (369)
T ss_dssp HHHHHTCHHHHHHHHHHH-------TCCCCCEEEESS-HHHHHHHH--TTTCSSEEEEECCC---------EEEECSHHH
T ss_pred HHHHhcCHHHHHHHHHHC-------CCCCCCceeeCC-HHHHHHHH--HHcCCCEEEEEcCCCCCc---ceEEEECCHHH
Confidence 999999999998888764 477899998852 22222222 357899999998876 54 46778888876
Q ss_pred cc----CC-CCceeEEEeeecCcEEEEEEEecc
Q 027466 188 LK----KL-EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 188 L~----~l-~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
|. .+ ..++++||||.. |.=|-|.+++|
T Consensus 157 l~~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d 188 (369)
T 3aw8_A 157 ALEALKALGGRGLILEGFVPF-DREVSLLAVRG 188 (369)
T ss_dssp HHHHHTTTCSSSEEEEECCCC-SEEEEEEEEEC
T ss_pred HHHHHHhcCCCcEEEEEcCCC-CEEEEEEEEEC
Confidence 64 23 468999999986 56777888865
No 22
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=97.95 E-value=0.0005 Score=62.21 Aligned_cols=140 Identities=13% Similarity=0.166 Sum_probs=89.9
Q ss_pred hHHhHHHhcCcEEEEeeCCCC-CCCC-CCeeEEEe-cc-CCh-HHHHHHHHHHHhCC-CeEE--e---------------
Q 027466 48 KLEGLARNKGILFVAIDQNRP-LSDQ-GPFDIVLH-KL-TGK-EWRQILEEYRQTHP-EVTV--L--------------- 104 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~p-l~~Q-gpfDvILH-Kl-td~-~~~~~lq~y~~~hP-~v~V--I--------------- 104 (223)
-+.+.|++.|+..+.+|-+.+ ...+ .-.|-.++ .. .|. .+.+.+.+..++++ +.++ -
T Consensus 19 ~i~~aa~~lG~~vv~v~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~id~V~~~~e~~~~~~a~l~e~lg 98 (425)
T 3vot_A 19 FIFEEAERLGLKVTFFYNSAEDFPGNLPAVERCVPLPLFEDEEAAMDVVRQTFVEFPFDGVMTLFEPALPFTAKAAEALN 98 (425)
T ss_dssp HHHHHHHHTTCEEEEEEETTSCCCCSCTTEEEEEEECTTTCHHHHHHHHHHHHHHSCCSEEECCCGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCEEEEEECCCcccccCHhhccEEEecCCCCCHHHHHHHHHHhhhhcCCCEEEECCchhHHHHHHHHHHcC
Confidence 355778999999999976543 2222 24454443 22 233 34555655555443 3221 1
Q ss_pred ---CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEE
Q 027466 105 ---DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (223)
Q Consensus 105 ---DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Mai 181 (223)
-++++++...|+..|-+.+++. .+.+|++..+++. ++ +..+.+.||+|+||.... .|.-+.+
T Consensus 99 lpg~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~----~~~~~~g~P~vvKp~~g~---gs~Gv~~ 163 (425)
T 3vot_A 99 LPGLPFTTMENCRNKNKTRSILQQN-------GLNTPVFHEFHTL-AD----LENRKLSYPLVVKPVNGF---SSQGVVR 163 (425)
T ss_dssp CSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESSG-GG----GTTCCCCSSEEEEESCC--------CEE
T ss_pred CCCCCHHHHHHhhCHHHHHHHHHHC-------CCCCCceeccCcH-HH----HHHhhcCCcEEEEECCCC---CCCCceE
Confidence 2567888999999998888763 4778999998632 12 234678999999997644 4667889
Q ss_pred EeccccccC------------------CCCceeEEEeee
Q 027466 182 AYDQYSLKK------------------LEPPLVLQEFVN 202 (223)
Q Consensus 182 vf~~~gL~~------------------l~~P~VlQeFIN 202 (223)
+.+++.|.+ -..++++||||+
T Consensus 164 v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~ 202 (425)
T 3vot_A 164 VDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID 202 (425)
T ss_dssp ECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC
T ss_pred echHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec
Confidence 999877632 246899999997
No 23
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=97.94 E-value=0.00034 Score=61.88 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=91.6
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCCCC----------------------CCeeEEEeccCChHHHHHHHHHHHhCCCeEEeC
Q 027466 48 KLEGLARNKGILFVAIDQNRPLSDQ----------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLD 105 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~~Q----------------------gpfDvILHKltd~~~~~~lq~y~~~hP~v~VID 105 (223)
.+...|++.|+..+.+|.+..-... ..+|+|+==..+..... +.....+.-.+.+.-
T Consensus 15 ~~~~~Ak~~G~~vv~vd~~~~~~~~~~aD~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~-~~~~~~~~~~~~~g~ 93 (363)
T 4ffl_A 15 EAAYLSKKAGMKVVLVDKNPQALIRNYADEFYCFDVIKEPEKLLELSKRVDAVLPVNENLACIE-FLNSIKEKFSCPVLF 93 (363)
T ss_dssp HHHHHHHHTTCEEEEEESCTTCTTTTTSSEEEECCTTTCHHHHHHHHTSSSEEEECCCCHHHHH-HHHHHGGGCSSCBCC
T ss_pred HHHHHHHHCCCEEEEEeCCCCChhHhhCCEEEECCCCcCHHHHHHHhcCCCEEEECCCChhHHH-HHHHHHHHCCCccCC
Confidence 4566789999999999976542211 12343322211111122 222333333455677
Q ss_pred ChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEecc
Q 027466 106 PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQ 185 (223)
Q Consensus 106 P~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~ 185 (223)
++++++...||..+-+.+++.. +.+|.+. .+.||+|+||.... .+..|.++.++
T Consensus 94 ~~~a~~~~~dK~~~k~~l~~~g-------ip~~~~~----------------~ig~P~vvKp~~g~---g~~gv~~v~~~ 147 (363)
T 4ffl_A 94 DFEAYRISRDKKKSKDYFKSIG-------VPTPQDR----------------PSKPPYFVKPPCES---SSVGARIIYDD 147 (363)
T ss_dssp CHHHHHHHTSHHHHHHHHHHTT-------CCCCCBS----------------CSSSCEEEECSSCC---TTTTCEEEC--
T ss_pred CHHHHHHhhCHHHHHHHHHhcC-------CCCCCce----------------ecCCCEEEEECCCC---CCcCeEEeccH
Confidence 8899999999999999988643 4455432 25799999997544 45678899999
Q ss_pred ccccCCCCceeEEEeeecCcEEEEEEEecceEEEEE
Q 027466 186 YSLKKLEPPLVLQEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 186 ~gL~~l~~P~VlQeFINH~gvlfKVYViG~~~~v~~ 221 (223)
+.+.....++++|||+. |.-|=|.+++|.-..++
T Consensus 148 ~~~~~~~~~~~~ee~i~--g~e~sv~~~~d~~~~~~ 181 (363)
T 4ffl_A 148 KDLEGLEPDTLVEEYVE--GEVVSLEVVGDGSHFAV 181 (363)
T ss_dssp ----CCCTTCEEEECCC--SEEEEEEEEEESSCEEE
T ss_pred HHhhhhccchhhhhhcc--CcEEEEEEEEECCeEEE
Confidence 99999999999999995 66777888876544433
No 24
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=97.93 E-value=2.7e-05 Score=69.03 Aligned_cols=147 Identities=18% Similarity=0.180 Sum_probs=78.6
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCC-----CC-----------CCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHH
Q 027466 48 KLEGLARNKGILFVAIDQNRPLS-----DQ-----------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQ 111 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~-----~Q-----------gpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~ 111 (223)
.+...+++.|++.+.+|.+.... +. ..+|+|+--..+... ..+ ++.+. .+.-++++++
T Consensus 15 ~~~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~v~~~~e~~~~-~~~-~~l~~----~~g~~~~~~~ 88 (365)
T 2z04_A 15 MTILEGRKLGFKFHVLEDKENAPACRVADRCFRTGQISEFVDSCDIITYEFEHIKD-EVL-EKCES----KLIPNPQALY 88 (365)
T ss_dssp HHHHHHGGGTCEEEEECSSSSCHHHHHSSEEECGGGHHHHHHHCSEEEESSSCCCH-HHH-HHHTT----TBSSCTHHHH
T ss_pred HHHHHHHHCCCEEEEEeCCCCCchhhhccceeeHHHHHHHhhcCCEEEECCCCCcH-HHH-HHHhh----hcCCCHHHHH
Confidence 46667788999999999864321 10 136777754433222 222 22222 5667789999
Q ss_pred hhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeeccc-CCCCCeeEEEEeccccccC
Q 027466 112 HLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD-GSAKSHELSLAYDQYSLKK 190 (223)
Q Consensus 112 ~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~-Gs~~SH~Maivf~~~gL~~ 190 (223)
...|+..+.+.+++. .+.+|++..++ .++..+.+ ..+.||+|+||.... |+. .+.++.+++.|.+
T Consensus 89 ~~~dK~~~~~~l~~~-------gip~p~~~~~~--~~~~~~~~--~~~~~P~vvKp~~~~~~g~---Gv~~v~~~~el~~ 154 (365)
T 2z04_A 89 VKKSRIREKLFLKKH-------GFPVPEFLVIK--RDEIIDAL--KSFKLPVVIKAEKLGYDGK---GQYRIKKLEDANQ 154 (365)
T ss_dssp HHTCHHHHHHHHHTT-------TCCCCCEEEC------------------CEEEECC-----------------------
T ss_pred HhhCHHHHHHHHHHc-------CCCCCCEEEEc--HHHHHHHH--HhcCCCEEEEEcCCCcCCC---CeEEECCHHHHHH
Confidence 999999999988753 47789998876 33333322 246799999999876 653 5677888777653
Q ss_pred C------CCceeEEEeeecCcEEEEEEEecc
Q 027466 191 L------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 191 l------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
. ..++++||||.. |.=|-|.+++|
T Consensus 155 ~~~~~~~~~~~lvEe~i~~-g~e~sv~~~~d 184 (365)
T 2z04_A 155 VVKNHDKEESFIIEEFVKF-EAEISCIGVRD 184 (365)
T ss_dssp ----------CEEEECCCC-SEEEEEEEEEC
T ss_pred HHHHhccCCCEEEEccCCC-CEEEEEEEEEC
Confidence 2 368999999986 56788888864
No 25
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=97.89 E-value=0.00022 Score=64.93 Aligned_cols=175 Identities=13% Similarity=0.148 Sum_probs=113.9
Q ss_pred CcEEEEEEe---Chhhhhccchhh-HHhHHHhcCcEEEEeeCCCCC----------------------------------
Q 027466 28 KLVVVGYAL---TSKKTKSFLQPK-LEGLARNKGILFVAIDQNRPL---------------------------------- 69 (223)
Q Consensus 28 ~~~~VGy~l---~~kK~~~f~~~~-~~~~~~~~gi~fv~iD~~~pl---------------------------------- 69 (223)
+..+|+..+ |.-+.=|+..-. +.+..++.|++.++||.+++-
T Consensus 21 ~~~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (386)
T 3e5n_A 21 RKIRVGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALLPG 100 (386)
T ss_dssp CCEEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEECGGGSEESTTCTTTCEECCCCCCEEECTT
T ss_pred CCceEEEEeccCCCCchhHHHHHHHHHHHhCccCCEEEEEEECCCCCEEecccchhhccccccccccccccccceeeccC
Confidence 355666665 444444444322 334446678999999977541
Q ss_pred ------------CCCCCeeEEEeccCChHHH-HHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcc
Q 027466 70 ------------SDQGPFDIVLHKLTGKEWR-QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKV 135 (223)
Q Consensus 70 ------------~~QgpfDvILHKltd~~~~-~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i 135 (223)
.....+|+|+-=+.+..-. ..+|...+.. .+.++ -++.++...+|+..+.+.+++. .+
T Consensus 101 ~~~~~~~~~~~~~~~~~~D~vf~~lhG~~gEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GI 172 (386)
T 3e5n_A 101 AQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMA-NLPFVGSGVLGSAVAMDKDMAKRVLRDA-------RL 172 (386)
T ss_dssp CSSSCEEECC--CCCCCCSEEEEEECSHHHHSSHHHHHHHHT-TCCBSSCCHHHHHHHHBHHHHHHHHHHT-------TC
T ss_pred ccccceeccccccccCCCCEEEEcCCCCCCcCHHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHHC-------CC
Confidence 0122467776555443211 1355555554 55555 4568999999999999988863 47
Q ss_pred cCCceEEEccCC---CCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCc
Q 027466 136 DVPRQLVIERDA---SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGM 205 (223)
Q Consensus 136 ~~P~~v~i~~~~---~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~g 205 (223)
.+|+++.+++.. .+..+.. ..+.||+|+||....|+ --+.++.+++.|.. ...++++||||. |
T Consensus 173 p~p~~~~~~~~~~~~~~~~~~~--~~lg~PvvVKP~~ggss---~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G 245 (386)
T 3e5n_A 173 AVAPFVCFDRHTAAHADVDTLI--AQLGLPLFVKPANQGSS---VGVSQVRTADAFAAALALALAYDHKVLVEAAVA--G 245 (386)
T ss_dssp CBCCEEEEEHHHHTTCCHHHHH--HHHCSSEEEEESBSCSS---TTCEEECSGGGHHHHHHHHTTTCSEEEEEECCC--S
T ss_pred CCCCEEEEeCcccchhhHHHHH--HhcCCCEEEEECCCCcC---CCEEEECCHHHHHHHHHHHHhCCCcEEEEcCCC--C
Confidence 899999986321 1322222 24689999999987765 45678899888742 256899999998 5
Q ss_pred EEEEEEEecceE
Q 027466 206 QMAFGYLADIHY 217 (223)
Q Consensus 206 vlfKVYViG~~~ 217 (223)
.=|=|-|+|+..
T Consensus 246 ~E~~v~vl~~~~ 257 (386)
T 3e5n_A 246 REIECAVLGNAV 257 (386)
T ss_dssp EEEEEEEECSSS
T ss_pred eEEEEEEEeCCC
Confidence 888888888754
No 26
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.89 E-value=3.5e-05 Score=66.93 Aligned_cols=101 Identities=17% Similarity=0.154 Sum_probs=57.8
Q ss_pred Ce-EEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 100 EV-TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v-~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
.+ ++.-++++++...|+..+.+.+++. .+.+|+++... ++..+.+....+.||+|+||....| |..
T Consensus 98 g~~~~~~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~---~~~~~~~~~~~~~~P~vvKp~~g~g---~~g 164 (331)
T 2pn1_A 98 GVTVIVSPYAACELCFDKYTMYEYCLRQ-------GIAHARTYATM---ASFEEALAAGEVQLPVFVKPRNGSA---SIE 164 (331)
T ss_dssp TCEECCCCHHHHHHHHBHHHHHHHHHHH-------TCCCCCEESSH---HHHHHHHHTTSSCSCEEEEESBC--------
T ss_pred CcEEecCCHHHHHHhhCHHHHHHHHHHc-------CCCCCcEEecH---HHhhhhhhcccCCCCEEEEeCCCCC---CCC
Confidence 44 3456788899999999999988764 36778876421 1222223224688999999988765 566
Q ss_pred EEEEeccccccCC---CCceeEEEeeecCcEEEEEEEecc
Q 027466 179 LSLAYDQYSLKKL---EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 179 Maivf~~~gL~~l---~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
+.++.+++.|... ..++++||||+ |.-|-|.+++|
T Consensus 165 v~~v~~~~el~~~~~~~~~~lvee~i~--G~e~~v~~~~d 202 (331)
T 2pn1_A 165 VRRVETVEEVEQLFSKNTDLIVQELLV--GQELGVDAYVD 202 (331)
T ss_dssp ------------------CEEEEECCC--SEEEEEEEEEC
T ss_pred eEEeCCHHHHHHHHHhCCCeEEEecCC--CcEEEEEEEEe
Confidence 7788888877653 36999999998 36777777753
No 27
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=97.88 E-value=6.6e-05 Score=69.07 Aligned_cols=151 Identities=15% Similarity=0.104 Sum_probs=95.5
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCC-----CCC---C-------------CeeEEEeccCChH-HHHHHHHHHHhCCCeEEe
Q 027466 47 PKLEGLARNKGILFVAIDQNRPL-----SDQ---G-------------PFDIVLHKLTGKE-WRQILEEYRQTHPEVTVL 104 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl-----~~Q---g-------------pfDvILHKltd~~-~~~~lq~y~~~hP~v~VI 104 (223)
..+...|++.|+..+-+|.+..- .+. + ..|+|+ ++.+ ....+-++.++. ..+.
T Consensus 48 ~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~---~~~e~~~~~~~~~l~~~--~~vg 122 (419)
T 4e4t_A 48 RMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVS---TEFENVPAASLDFLART--TFVA 122 (419)
T ss_dssp HHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEE---ECCTTCCHHHHHHHHTT--SEES
T ss_pred HHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEE---EccCcCCHHHHHHHHcc--CCcC
Confidence 45667788899999999965321 110 1 235555 2211 111222333333 4777
Q ss_pred CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHh--cCCccceEEeeecccCCCCCeeEEEE
Q 027466 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLK--AGLTLPLVAKPLVADGSAKSHELSLA 182 (223)
Q Consensus 105 DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~--agl~fP~I~KplvA~Gs~~SH~Maiv 182 (223)
-++++++...||..+-+.++++ .+.+|++..+++. +++.+...+ .++ ||+|+||.. .| ..+.-+.++
T Consensus 123 p~~~a~~~~~dK~~~k~~l~~~-------Gip~p~~~~v~~~-~e~~~~~~~~~~~~-~P~VvKp~~-~g-~~G~Gv~~v 191 (419)
T 4e4t_A 123 PAGRCVAVAQDRIAEKRFIEAS-------GVPVAPHVVIESA-AALAALDDAALDAV-LPGILKTAR-LG-YDGKGQVRV 191 (419)
T ss_dssp SCHHHHHHHTCHHHHHHHHHHT-------TCCBCCEEEECSH-HHHHTSCHHHHHTT-CSEEEEESS-SC-CTTTTEEEE
T ss_pred CCHHHHHHhcCHHHHHHHHHHc-------CcCCCCeEEECCH-HHHHHHHHhhcccc-CCEEEEecC-CC-CCCCceEEE
Confidence 8889999999999999998764 4788999988531 121111111 117 999999952 23 356778999
Q ss_pred eccccccC----C-CCceeEEEeeecCcEEEEEEEec
Q 027466 183 YDQYSLKK----L-EPPLVLQEFVNHGMQMAFGYLAD 214 (223)
Q Consensus 183 f~~~gL~~----l-~~P~VlQeFINH~gvlfKVYViG 214 (223)
.+++.|.. + ..++++||||+- +.=+=|.+++
T Consensus 192 ~~~~el~~a~~~~~~~~~lvEe~i~~-~~Eisv~v~~ 227 (419)
T 4e4t_A 192 STAREARDAHAALGGVPCVLEKRLPL-KYEVSALIAR 227 (419)
T ss_dssp CSHHHHHHHHHHTTTCCEEEEECCCE-EEEEEEEEEE
T ss_pred CCHHHHHHHHHhcCCCcEEEeecCCC-CeEEEEEEEE
Confidence 99887743 2 469999999985 3445555664
No 28
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.82 E-value=6.3e-05 Score=68.18 Aligned_cols=126 Identities=15% Similarity=0.134 Sum_probs=88.7
Q ss_pred CeeEEEeccCC---hHHHHHHHHHHHhCCCeEEeCC-hhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCC
Q 027466 74 PFDIVLHKLTG---KEWRQILEEYRQTHPEVTVLDP-PYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASS 149 (223)
Q Consensus 74 pfDvILHKltd---~~~~~~lq~y~~~hP~v~VIDP-~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~ 149 (223)
.+|+|+-=+.+ ++ ..+|.+.+.. ++.++-| +.++...+|+..+.+.+++. .+.+|+++.+++....
T Consensus 109 ~~D~vfp~lhG~~gEd--g~iq~lle~~-gip~vG~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~ 178 (373)
T 3lwb_A 109 SVDVVFPVLHGPYGED--GTIQGLLELA-GVPYVGAGVLASAVGMDKEFTKKLLAAD-------GLPVGAYAVLRPPRST 178 (373)
T ss_dssp TCSEEEECCEETTEEC--CHHHHHHHHH-TCCBSSSCHHHHHHHHBHHHHHHHHHHT-------TCCBCCEEEECTTCCC
T ss_pred CccEEEECCCCCCCcc--HHHHHHHHHc-CCCccCCcHHHHHHHcCHHHHHHHHHHc-------CcCCCCEEEEECcccc
Confidence 46776655422 21 1234444433 5666666 78999999999999998864 4789999999644321
Q ss_pred -chHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecce
Q 027466 150 -IPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 150 -~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
..+. ...+.||+|+||....|| .-+.+|.+++.|.. ...++++||||. |.=|-|-|+|+.
T Consensus 179 ~~~~~--~~~lg~PvvVKP~~ggss---~GV~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 246 (373)
T 3lwb_A 179 LHRQE--CERLGLPVFVKPARGGSS---IGVSRVSSWDQLPAAVARARRHDPKVIVEAAIS--GRELECGVLEMP 246 (373)
T ss_dssp CCHHH--HHHHCSCEEEEESBCSTT---TTCEEECSGGGHHHHHHHHHTTCSSEEEEECCE--EEEEEEEEEECT
T ss_pred hhHHH--HHhcCCCEEEEeCCCCCC---CCEEEeCCHHHHHHHHHHHHhcCCCEEEeCCCC--CeEEEEEEEECC
Confidence 1222 345789999999887665 45678899888743 257999999999 788888898875
No 29
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=97.80 E-value=0.00013 Score=65.41 Aligned_cols=126 Identities=13% Similarity=0.195 Sum_probs=87.5
Q ss_pred CeeEEEeccCC---hHHHHHHHHHHHhCCCeEEeC-ChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC--
Q 027466 74 PFDIVLHKLTG---KEWRQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-- 147 (223)
Q Consensus 74 pfDvILHKltd---~~~~~~lq~y~~~hP~v~VID-P~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~-- 147 (223)
.+|+|+==+.+ ++ ..+|.+.+.. .+.++- ++.++...+|+..+.+.+++. .+.+|+++.+++..
T Consensus 98 ~~D~vf~~lhG~~gEd--g~iq~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~ 167 (364)
T 3i12_A 98 TVDVIFPIVHGTLGED--GSLQGMLRVA-NLPFVGSDVLSSAACMDKDVAKRLLRDA-------GLNIAPFITLTRTNRH 167 (364)
T ss_dssp CCSEEEECCCSTTTTS--SHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEEETTTGG
T ss_pred CCCEEEEeCCCCCCcC--HHHHHHHHHc-CCCccCCCHHHHHHHHCHHHHHHHHHHC-------CCCCCCEEEEEccccc
Confidence 56887654433 32 1345555554 566655 478999999999999998863 57899999996432
Q ss_pred -CCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecce
Q 027466 148 -SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 148 -~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
.+..+.. ..+.||+|+||....|+ .-+.++.+++.|.. ...++++||||. |.=|=|.|+|+.
T Consensus 168 ~~~~~~~~--~~lg~PvvVKP~~ggss---~Gv~~v~~~~el~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 237 (364)
T 3i12_A 168 AFSFAEVE--SRLGLPLFVKPANQGSS---VGVSKVANEAQYQQAVALAFEFDHKVVVEQGIK--GREIECAVLGND 237 (364)
T ss_dssp GCCHHHHH--HHHCSSEEEEETTCCTT---TTCEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESS
T ss_pred hhhHHHHH--HhcCCCEEEEECCCCCC---cCeEEeCCHHHHHHHHHHHHhcCCcEEEEcCcC--CeEEEEEEEeCC
Confidence 1322222 24679999999866554 55678889877743 256899999997 477778888775
No 30
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=97.80 E-value=0.00023 Score=63.24 Aligned_cols=151 Identities=10% Similarity=0.127 Sum_probs=91.8
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCCCCC-----------------------CCeeEEEeccCChHHHHHHHHHHHhCCCeEE
Q 027466 47 PKLEGLARNKGILFVAIDQNRPLSDQ-----------------------GPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl~~Q-----------------------gpfDvILHKltd~~~~~~lq~y~~~hP~v~V 103 (223)
..+...+++.|+..+.+|.+..-... ..+|+|+-=.-+. ..+.++. .++. .+.+
T Consensus 24 ~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~~~~~d~v~~~~e~~-~~~~~~~-l~~~-gi~~ 100 (391)
T 1kjq_A 24 KEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAI-ATDMLIQ-LEEE-GLNV 100 (391)
T ss_dssp HHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHHHHCCSEEEECSSCS-CHHHHHH-HHHT-TCEE
T ss_pred HHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHHHcCCCEEEECCCcC-CHHHHHH-HHhC-CCCc
Confidence 35666778899999999986321110 1344444322111 0111222 2222 3445
Q ss_pred eCChhhHHhhcCHHHHHHHH-HhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEE
Q 027466 104 LDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (223)
Q Consensus 104 IDP~~~i~~L~dR~~~~~~l-~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maiv 182 (223)
.-++++++...||..+.+.+ ++. .+.+|++..+++ .+++.+.+. .+.||+|+||.... .+..+.++
T Consensus 101 ~~~~~~~~~~~dK~~~~~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~---gg~Gv~~v 167 (391)
T 1kjq_A 101 VPCARATKLTMNREGIRRLAAEEL-------QLPTSTYRFADS-ESLFREAVA--DIGYPCIVKPVMSS---SGKGQTFI 167 (391)
T ss_dssp SSCHHHHHHHHSHHHHHHHHHTTS-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEEESCC------CCCEEE
T ss_pred CCCHHHHHHhhCHHHHHHHHHHhC-------CCCCCCeeeeCC-HHHHHHHHH--hcCCCEEEEeCCCC---CCCCeEEE
Confidence 66788999999999888886 542 477899998852 223233332 36799999998544 45667889
Q ss_pred eccccccC-----------CCCceeEEEeeecCcEEEEEEEec
Q 027466 183 YDQYSLKK-----------LEPPLVLQEFVNHGMQMAFGYLAD 214 (223)
Q Consensus 183 f~~~gL~~-----------l~~P~VlQeFINH~gvlfKVYViG 214 (223)
.+++.|.+ -..++++||||.. |.=|-|.+++
T Consensus 168 ~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~ 209 (391)
T 1kjq_A 168 RSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKF-DFEITLLTVS 209 (391)
T ss_dssp CSGGGHHHHHHHHHHHSGGGCCCEEEEECCCC-SEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHhhcccCCCCEEEEEecCC-CeEEEEEEEE
Confidence 99877642 1468999999985 4445555553
No 31
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=97.77 E-value=0.00011 Score=67.12 Aligned_cols=173 Identities=11% Similarity=0.076 Sum_probs=110.1
Q ss_pred EEEEEEe---Chhhhhccchhh-HHhHHHhcCcEEEEeeCCCC------------C------CCC---------------
Q 027466 30 VVVGYAL---TSKKTKSFLQPK-LEGLARNKGILFVAIDQNRP------------L------SDQ--------------- 72 (223)
Q Consensus 30 ~~VGy~l---~~kK~~~f~~~~-~~~~~~~~gi~fv~iD~~~p------------l------~~Q--------------- 72 (223)
.+|+..+ |.-+.=|+..-. +.+..++.|++.++||.++. + ...
T Consensus 38 ~~v~vl~GG~S~E~evSl~Sa~~v~~al~~~~~~v~~i~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (383)
T 3k3p_A 38 ETLVLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAGDFIKTQEFDSQPSETDKLMTNDTIIASQKIKPSDIY 117 (383)
T ss_dssp EEEEEEEECSSTTHHHHHHHHHHHHHHSCTTTEEEEEEEECTTSCEEEEEEESSCCC--CCCCCTTSCCGGGEECGGGGC
T ss_pred CeEEEEeCCCCCcchHHHHHHHHHHHHhhhcCCEEEEEEecCCCCEEecccccccccccccccccccccccccccccccc
Confidence 4677776 444544444322 33445678999999998753 0 010
Q ss_pred CCeeEEEeccCChHH-HHHHHHHHHhCCCeEEeC-ChhhHHhhcCHHHHHHHHHhccccCCCCc-ccCCceEEEccCCC-
Q 027466 73 GPFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGK-VDVPRQLVIERDAS- 148 (223)
Q Consensus 73 gpfDvILHKltd~~~-~~~lq~y~~~hP~v~VID-P~~~i~~L~dR~~~~~~l~~l~~~~~~~~-i~~P~~v~i~~~~~- 148 (223)
..+|+++-=+-+..- ...+|.+.+.. .+.++- ++.+....+|+..+.+.+++. . +.+|+++.+++...
T Consensus 118 ~~~D~vf~~lhG~~GEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~-------G~Ipvp~~~~~~~~~~~ 189 (383)
T 3k3p_A 118 EEEAVVFPVLHGPMGEDGSIQGFLEVL-KMPYVGTNILSSSVAMDKITTNQVLESA-------TTIPQVAYVALIEGEPL 189 (383)
T ss_dssp CTTCEEEEECCSTTTSSSHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHH-------CCCCBCCEEEEETTSCH
T ss_pred cCCCEEEEcCCCCCcchHHHHHHHHHc-CCCccCCCHHHHHHHhCHHHHHHHHHhC-------CCcCCCCEEEEeCccch
Confidence 146887765543210 01345555544 566554 578899999999999998864 4 78999999964321
Q ss_pred -CchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecce
Q 027466 149 -SIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 149 -~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
+..... ...+.||+|+||....| |.-+.++.+++.|.+ ...++++||||+ |.=|-|.|+||.
T Consensus 190 ~~~~~~~-~~~lg~PvvVKP~~ggs---s~GV~~v~~~~el~~al~~a~~~~~~vlVEe~I~--G~E~~v~vl~d~ 259 (383)
T 3k3p_A 190 ESKLAEV-EEKLIYPVFVKPANMGS---SVGISKAENRTDLKQAIALALKYDSRVLIEQGVD--AREIEVGILGNT 259 (383)
T ss_dssp HHHHHHH-HHHCCSSEEEEECC---------CEEESSHHHHHHHHHHHHHHCSEEEEEECCC--SEEEEEEEEESS
T ss_pred hHHHHHH-HHhcCCCEEEEeCCCCC---CCCEEEECCHHHHHHHHHHHHhCCCeEEEEcCCC--CeEEEEEEEeCC
Confidence 111121 23588999999987765 556778899877743 256899999998 788899999875
No 32
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=97.76 E-value=0.00036 Score=63.22 Aligned_cols=146 Identities=11% Similarity=0.013 Sum_probs=93.4
Q ss_pred hHHhHHHhcCcEEEEeeCCCC--CCCCC-CeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHHHHHH
Q 027466 48 KLEGLARNKGILFVAIDQNRP--LSDQG-PFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVA 124 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~p--l~~Qg-pfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~ 124 (223)
.+..-|++.|+.+ +|.+.. -.-.+ ..|+|.--..... .+.++...+.. .|.-++++++...||..+-+.++
T Consensus 15 m~~~aa~~lG~~v--~~~~~~a~~~~~~l~~d~it~e~e~v~-~~~l~~l~~~~---~v~p~~~a~~~~~DK~~~k~~l~ 88 (355)
T 3eth_A 15 MLRQAGEPLGIAV--WPVGLDAEPAAVPFQQSVITAEIERWP-ETALTRQLARH---PAFVNRDVFPIIADRLTQKQLFD 88 (355)
T ss_dssp HHHHHHGGGTCEE--EEECTTCCGGGCCCTTSEEEESCSCCC-CCHHHHHHHTC---TTBTTTTHHHHHHSHHHHHHHHH
T ss_pred HHHHHHHHCCCEE--ECCCCCCCceEEcccCCEEEECcCCcC-HHHHHHHHhcC---CcCCCHHHHHHhcCHHHHHHHHH
Confidence 3555678889998 565433 10011 3466554433221 12233333332 57788999999999999999887
Q ss_pred hccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEec--cccccC--CCCceeEEEe
Q 027466 125 DMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD--QYSLKK--LEPPLVLQEF 200 (223)
Q Consensus 125 ~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~--~~gL~~--l~~P~VlQeF 200 (223)
++ .+.+|++..+++ .+++.+..+ .+.||+|+||... |+ ++.-+.++.+ ++.|.+ +. ++++|+|
T Consensus 89 ~~-------GIptp~~~~v~~-~~e~~~~~~--~~G~P~VvKp~~~-G~-~GkGv~~v~~~~~~el~~a~~~-~vivEe~ 155 (355)
T 3eth_A 89 KL-------HLPTAPWQLLAE-RSEWPAVFD--RLGELAIVKRRTG-GY-DGRGQWRLRANETEQLPAECYG-ECIVEQG 155 (355)
T ss_dssp HT-------TCCBCCEEEECC-GGGHHHHHH--HHCSEEEEEESSS-CC-TTTTEEEEETTCGGGSCGGGTT-TEEEEEC
T ss_pred HC-------ccCCCCEEEECC-HHHHHHHHH--HcCCCEEEEecCC-CC-CCCeEEEEcCCCHHHHHHHhhC-CEEEEEc
Confidence 64 578899998853 334333333 3679999999763 33 5688999999 888764 34 7999999
Q ss_pred eecCcEEEEEEEe
Q 027466 201 VNHGMQMAFGYLA 213 (223)
Q Consensus 201 INH~gvlfKVYVi 213 (223)
|+.+ .=+=|-++
T Consensus 156 I~~~-~Eisv~v~ 167 (355)
T 3eth_A 156 INFS-GEVSLVGA 167 (355)
T ss_dssp CCCS-EEEEEEEE
T ss_pred cCCC-cEEEEEEE
Confidence 9853 32334444
No 33
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=97.74 E-value=6e-05 Score=67.47 Aligned_cols=132 Identities=19% Similarity=0.237 Sum_probs=89.3
Q ss_pred CeeEEEeccCChHH-HHHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC-CCc
Q 027466 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA-SSI 150 (223)
Q Consensus 74 pfDvILHKltd~~~-~~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~-~~~ 150 (223)
.+|+++-=+.+..- ...+|.+.+.. .+..+ =++.++...+||..+-+.+++. .+.+|+++.+.+.. ...
T Consensus 97 ~~D~vf~~l~G~~gEdg~~q~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 168 (357)
T 4fu0_A 97 KVDLVFPVLHGKNGEDGTLQGIFELA-GIPVVGCDTLSSALCMDKDRAHKLVSLA-------GISVPKSVTFKRFNEEAA 168 (357)
T ss_dssp ECSEEEECCCSHHHHSSHHHHHHHHT-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCBCCCEEEEEGGGHHHH
T ss_pred CCCEEEECCcCccccCHHHHHHHHHC-CCcEECcCHHHHHHHhCHHHHHHHHHHC-------CCCCCCEEeecCCChHHH
Confidence 45666544443211 12355555554 55555 3577889999999999988863 57899999886422 111
Q ss_pred hHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecceEEE
Q 027466 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIHYII 219 (223)
Q Consensus 151 ~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~~~v 219 (223)
.+.. .+.+.||+|+||.... .|.-|.+|.+++.|.+ ...++++|+||+ |.-+=|.|+|+....
T Consensus 169 ~~~~-~~~lg~PvvVKP~~gg---~s~Gv~~v~~~~el~~~~~~a~~~~~~vlvE~~i~--G~e~~v~vl~~~~~~ 238 (357)
T 4fu0_A 169 MKEI-EANLTYPLFIKPVRAG---SSFGITKVIEKQELDAAIELAFEHDTEVIVEETIN--GFEVGCAVLGIDELI 238 (357)
T ss_dssp HHHH-HHHCCSSEEEEETTCS---SSTTCEEESSHHHHHHHHHHHTTTCSEEEEEECCC--SEEEEEEEEESSSEE
T ss_pred HHHH-HHhcCCCEEEEECCCC---CCCceEEeccHHhHHHHHHHHhccCCeEEEEEecC--CEEEEEEEEecCCce
Confidence 2222 2458999999997643 3667899999988743 357899999995 788888899876543
No 34
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=97.73 E-value=0.00019 Score=66.09 Aligned_cols=111 Identities=12% Similarity=0.020 Sum_probs=78.1
Q ss_pred HHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEee
Q 027466 89 QILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKP 167 (223)
Q Consensus 89 ~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kp 167 (223)
..+.+..++. .+.++ -+.++++...|+..+.+.+++. .|.+|++..+++ .++..+.++ .+.||+|+||
T Consensus 81 ~~~~~~l~~~-Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIptp~~~~~~~-~~ea~~~~~--~~g~PvVvKp 149 (431)
T 3mjf_A 81 IGVVDAFRAA-GLAIFGPTQAAAQLEGSKAFTKDFLARH-------NIPSAEYQNFTD-VEAALAYVR--QKGAPIVIKA 149 (431)
T ss_dssp TTHHHHHHHT-TCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCSBCCEEEESC-HHHHHHHHH--HHCSSEEEEE
T ss_pred HHHHHHHHhc-CCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEeeCC-HHHHHHHHH--HcCCeEEEEE
Confidence 3344444443 56666 7889999999999999988764 477899998852 223333333 3579999999
Q ss_pred ecccCCCCCeeEEEEeccccccC----C---------CCceeEEEeeecCcEEEEEEEecc
Q 027466 168 LVADGSAKSHELSLAYDQYSLKK----L---------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 168 lvA~Gs~~SH~Maivf~~~gL~~----l---------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
.-.. .+..+.++.+++.+.+ + ..++++|||+. |.=|=|.+++|
T Consensus 150 ~~~~---gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~d 205 (431)
T 3mjf_A 150 DGLA---AGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD--GEEASFIVMVD 205 (431)
T ss_dssp SSSC---TTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC--SEEEEEEEEEE
T ss_pred CCCC---CCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC--CcEEEEEEEEc
Confidence 7543 5667888988866532 1 35899999999 57777777755
No 35
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=97.69 E-value=0.00022 Score=65.97 Aligned_cols=109 Identities=10% Similarity=0.029 Sum_probs=74.3
Q ss_pred HHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeec
Q 027466 91 LEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 169 (223)
Q Consensus 91 lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kplv 169 (223)
+.+..++. .+.++ -+.++++...|+..+.+.+++. .|.+|++..+++ .++..+.++ .+.||+|+||..
T Consensus 99 ~~~~l~~~-Gi~~~Gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~-~~ea~~~~~--~~g~PvVvKp~~ 167 (442)
T 3lp8_A 99 LSDALTEE-GILVFGPSKAAARLESSKGFTKELCMRY-------GIPTAKYGYFVD-TNSAYKFID--KHKLPLVVKADG 167 (442)
T ss_dssp HHHHHHHT-TCEEESCCHHHHHHHHCHHHHHHHHHHH-------TCCBCCEEEESS-HHHHHHHHH--HSCSSEEEEESS
T ss_pred HHHHHHhc-CCcEecCCHHHHHHhhCHHHHHHHHHHC-------CCCCCCEEEECC-HHHHHHHHH--HcCCcEEEeECC
Confidence 33334333 46555 6677888888888888887764 477899988852 223333333 368999999975
Q ss_pred ccCCCCCeeEEEEeccccccC----------C---CCceeEEEeeecCcEEEEEEEecc
Q 027466 170 ADGSAKSHELSLAYDQYSLKK----------L---EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 170 A~Gs~~SH~Maivf~~~gL~~----------l---~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
.. .+..+.++.+++.+.+ + ..++++||||. |.=|=|.++.|
T Consensus 168 ~~---gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~--G~E~sv~~~~d 221 (442)
T 3lp8_A 168 LA---QGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE--GKEISFFTLVD 221 (442)
T ss_dssp CC---TTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEEEE
T ss_pred CC---CCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec--CcEEEEEEEEC
Confidence 43 5667888988876532 1 25899999999 56677777744
No 36
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=97.66 E-value=9.1e-05 Score=65.24 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=87.6
Q ss_pred CCCeeEEEeccCC---hHHHHHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCC
Q 027466 72 QGPFDIVLHKLTG---KEWRQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDA 147 (223)
Q Consensus 72 QgpfDvILHKltd---~~~~~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~ 147 (223)
...+|+|+--+.+ +. ..++...+.. .+.++ -++.++....|+..+.+.+++. .+.+|+++.+++..
T Consensus 74 ~~~~D~v~~~~hg~~ged--g~i~~~le~~-gip~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~~ 143 (322)
T 2fb9_A 74 WERYDVVFPLLHGRFGED--GTVQGFLELL-GKPYVGAGVAASALCMDKDLSKRVLAQA-------GVPVVPWVAVRKGE 143 (322)
T ss_dssp CTTCSEEEEECCSTTTTS--SHHHHHHHHH-TCCBSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEEETTS
T ss_pred ccCCCEEEEeCCCCCCcc--HHHHHHHHHc-CCCeeCcCHHHHHHHcCHHHHHHHHHHC-------CCCCCCEEEEECch
Confidence 3468999866543 21 1233333332 45555 4589999999999999998863 47789999986432
Q ss_pred CCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecce
Q 027466 148 SSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 148 ~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
.+ .+ .+.||+|+||....|+ .-+.++.+++.|.. ...++++||||. |..=|-|.|+|+.
T Consensus 144 ~~---~~---~~g~PvvvKP~~g~~s---~Gv~~v~~~~el~~a~~~~~~~~~~vlvEe~I~-G~~E~~v~vl~~~ 209 (322)
T 2fb9_A 144 PP---VV---PFDPPFFVKPANTGSS---VGISRVERFQDLEAALALAFRYDEKAVVEKALS-PVRELEVGVLGNV 209 (322)
T ss_dssp CC---CC---CSCSCEEEEETTCCTT---TTCEEESSHHHHHHHHHHHTTTCSEEEEEECCS-SCEEEEEEEESSS
T ss_pred hh---hh---ccCCCEEEEeCCCCCC---CCEEEECCHHHHHHHHHHHHhcCCeEEEEeCCC-CCeeEEEEEEeCC
Confidence 21 11 5789999999987665 45678888877643 357899999997 2277889999875
No 37
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=97.66 E-value=0.0002 Score=65.05 Aligned_cols=151 Identities=13% Similarity=0.142 Sum_probs=89.8
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCCC--------------C---------CCCeeEEEeccCChHHHHHHHHHHHhCCCeEE
Q 027466 47 PKLEGLARNKGILFVAIDQNRPLS--------------D---------QGPFDIVLHKLTGKEWRQILEEYRQTHPEVTV 103 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl~--------------~---------QgpfDvILHKltd~~~~~~lq~y~~~hP~v~V 103 (223)
..+...+++.|+..+.+|.+..-. + +..+|+|+--.-+.. .+.++. .++. .+.+
T Consensus 32 ~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~V~~~~e~~~-~~~~~~-l~~~-gi~~ 108 (433)
T 2dwc_A 32 KEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAIN-LDALFE-FEKD-GYFV 108 (433)
T ss_dssp HHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCSC-HHHHHH-HHHT-TCCB
T ss_pred HHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHHHcCCCEEEECcccCC-HHHHHH-HHhc-CCee
Confidence 346667788999999999763210 0 124555554332111 122222 2222 3345
Q ss_pred eCChhhHHhhcCHHHHHHHH-HhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEE
Q 027466 104 LDPPYAIQHLHNRQSMLQCV-ADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (223)
Q Consensus 104 IDP~~~i~~L~dR~~~~~~l-~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maiv 182 (223)
.-++++++...||..+.+.+ ++. .+.+|++..+++ .+++.+.+. .+.||+|+||.... .+..+.++
T Consensus 109 ~~~~~~~~~~~dK~~~k~~l~~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvKp~~g~---gg~Gv~~v 175 (433)
T 2dwc_A 109 VPNARATWIAMHRERLRETLVKEA-------KVPTSRYMYATT-LDELYEACE--KIGYPCHTKAIMSS---SGKGSYFV 175 (433)
T ss_dssp SSCHHHHHHHHCHHHHHHHHHHTS-------CCCCCCEEEESS-HHHHHHHHH--HHCSSEEEEECCC---------EEE
T ss_pred CCCHHHHHHhhCHHHHHHHHHHhc-------CCCCCCeeEeCC-HHHHHHHHH--hcCCCEEEEECCCc---CCCCeEEE
Confidence 66788999999999888887 543 477899998853 222222332 35799999998543 46778899
Q ss_pred eccccccC----C-------CCceeEEEeeecCcEEEEEEEec
Q 027466 183 YDQYSLKK----L-------EPPLVLQEFVNHGMQMAFGYLAD 214 (223)
Q Consensus 183 f~~~gL~~----l-------~~P~VlQeFINH~gvlfKVYViG 214 (223)
.+++.|.. + ..++++||||+. |.=|-|.+++
T Consensus 176 ~~~~el~~~~~~~~~~~~~~~~~~lvEe~i~~-g~E~sv~~~~ 217 (433)
T 2dwc_A 176 KGPEDIPKAWEEAKTKARGSAEKIIVEEHIDF-DVEVTELAVR 217 (433)
T ss_dssp CSGGGHHHHHHC---------CCEEEEECCCC-SEEEEECCEE
T ss_pred CCHHHHHHHHHHHHhhcccCCCCEEEEccCCC-CeeEEEEEEe
Confidence 99877632 2 368999999985 4445555543
No 38
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.63 E-value=0.00043 Score=60.84 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=75.1
Q ss_pred CCeeEEEeccCCh-HHHHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCch
Q 027466 73 GPFDIVLHKLTGK-EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIP 151 (223)
Q Consensus 73 gpfDvILHKltd~-~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~ 151 (223)
.++|+++-=.+++ ...+.+-+..+.. ...+.-++++++...|+..+.+.+++ .+.+|+++.
T Consensus 68 ~~~D~~~~i~~~ed~~l~~~~~~l~~~-g~~~g~~~~~~~~~~dK~~~~~~l~~--------Gip~p~~~~--------- 129 (305)
T 3df7_A 68 EKSDAFLIIAPEDDFLLYTLTKKAEKY-CENLGSSSRAIAVTSDKWELYKKLRG--------EVQVPQTSL--------- 129 (305)
T ss_dssp TTCSEEEEECCCGGGHHHHHHHHHHTT-SEESSCCHHHHHHHTSHHHHHHHHTT--------TSCCCCEES---------
T ss_pred HhcCEEEEEccCCcHHHHHHHHHHHhc-CCccCCCHHHHHHhcCHHHHHHHHHh--------CCCCCCEec---------
Confidence 3666644433333 2344454555543 47889999999999999999999764 366788773
Q ss_pred HHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccCCCCceeEEEeeecCcEEEEEEEecc
Q 027466 152 DVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 152 ~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
..+.||+|+||....|+.. +.++.+ ...++++||||. |.=|=|.++++
T Consensus 130 -----~~~~~P~vvKP~~g~gs~G---v~~v~~------~~~~~lvEe~I~--G~e~sv~v~~g 177 (305)
T 3df7_A 130 -----RPLDCKFIIKPRTACAGEG---IGFSDE------VPDGHIAQEFIE--GINLSVSLAVG 177 (305)
T ss_dssp -----SCCSSSEEEEESSCC-------CBCCSS------CCTTEEEEECCC--SEEEEEEEEES
T ss_pred -----ccCCCCEEEEeCCCCCCCC---EEEEec------CCCCEEEEeccC--CcEEEEEEEeC
Confidence 2478999999998776543 334444 457999999999 67788888854
No 39
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=97.62 E-value=0.00022 Score=63.78 Aligned_cols=140 Identities=16% Similarity=0.147 Sum_probs=85.9
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCC------------------------CCCCCeeEEEeccCChHHHHHHHHHHHhCCCeE
Q 027466 47 PKLEGLARNKGILFVAIDQNRPL------------------------SDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVT 102 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl------------------------~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~ 102 (223)
..+...|++.|+..+.+|...+- .....+|.|+--..+... ..+.+..++. .+
T Consensus 20 ~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~~d~v~~~~~~~~~-~~~a~~~~~~-gl- 96 (403)
T 4dim_A 20 LGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKVKDLNLDGAATCCLDTGI-VSLARICDKE-NL- 96 (403)
T ss_dssp HHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHTTTSCCSEEECCSCSTTH-HHHHHHHHHH-TC-
T ss_pred HHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHHHHcCCCEEEeCCcchhH-HHHHHHHHHc-Cc-
Confidence 34667778889998888753211 012345666632222211 1222222222 12
Q ss_pred EeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEE
Q 027466 103 VLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA 182 (223)
Q Consensus 103 VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maiv 182 (223)
+--++++++.+.|+..+.+.+++. .+.+|++..++ +.++..+.. ..+.||+|+||....| +..+.++
T Consensus 97 ~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~-~~~~~~~~~--~~~g~P~vvKp~~g~g---g~Gv~~v 163 (403)
T 4dim_A 97 VGLNEEAAIMCGDKYKMKEAFKKY-------NVNTARHFVVR-NENELKNAL--ENLKLPVIVKATDLQG---SKGIYIA 163 (403)
T ss_dssp SSCCHHHHHHHHCHHHHHHHHHHH-------TCCCCCEECCC-SHHHHHHHH--HTSCSSEEEECSCC--------CEEE
T ss_pred CCCCHHHHHHHhCHHHHHHHHHHc-------CCCCCCEEEeC-CHHHHHHHH--hcCCCCEEEEECCCCC---CCCEEEE
Confidence 245788999999999999988764 47789998774 222222222 3578999999987654 5678889
Q ss_pred eccccccCC---------CCceeEEEeee
Q 027466 183 YDQYSLKKL---------EPPLVLQEFVN 202 (223)
Q Consensus 183 f~~~gL~~l---------~~P~VlQeFIN 202 (223)
.+++.|.+. ..++++||||.
T Consensus 164 ~~~~el~~~~~~~~~~~~~~~~lvEe~i~ 192 (403)
T 4dim_A 164 KKEEEAIDGFNETMNLTKRDYCIVEEFIE 192 (403)
T ss_dssp SSHHHHHHHHHHHHHHCSSSCCEEEECCC
T ss_pred CCHHHHHHHHHHHHhcCcCCcEEEEEccC
Confidence 998877432 36899999998
No 40
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.60 E-value=0.001 Score=60.05 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=84.8
Q ss_pred CeeEEEeccCChHH-HHHHHHHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC-Cc
Q 027466 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS-SI 150 (223)
Q Consensus 74 pfDvILHKltd~~~-~~~lq~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~-~~ 150 (223)
.+|+|+--+.+..- ...++...+.. .+.++ -++.++....|+..+.+.+++. .+.+|+++.+++... +.
T Consensus 107 ~~D~v~~~lhg~~gedg~i~~~le~~-gip~~G~~~~a~~~~~DK~~~k~~l~~~-------Gip~p~~~~~~~~~~~~~ 178 (367)
T 2pvp_A 107 ELPLVINLVHGGDGEDGKLASLLEFY-RIAFIGPRIEASVLSYNKYLTKLYAKDL-------GIKTLDYVLLNEKNRANA 178 (367)
T ss_dssp ECCSEEECCCSTTTTSSHHHHHHHHT-TCCEESCCHHHHHHHHSHHHHHHHHHHH-------TCBCCCCEEECTTTGGGH
T ss_pred CCCEEEEcCCCCCccHHHHHHHHHHc-CCCccCCCHHHHHHHcCHHHHHHHHHHC-------CcCCCCEEEEeCCchHHH
Confidence 35666544433210 11244444443 56666 6689999999999999998864 477899999864321 22
Q ss_pred hHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEE---EEEEEecce
Q 027466 151 PDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQM---AFGYLADIH 216 (223)
Q Consensus 151 ~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvl---fKVYViG~~ 216 (223)
.+ ...+.||+|+||....|+ --+.++.+++.|.. ...++++||||. |..= +-+.| ++.
T Consensus 179 ~~---~~~lg~PvvVKP~~g~ss---~Gv~~v~~~~el~~a~~~~~~~~~~vlVEe~I~-G~~E~svi~v~v-~g~ 246 (367)
T 2pvp_A 179 LD---LMNFNFPFIVKPSNAGSS---LGVNVVKEEKELIYALDSAFEYSKEVLIEPFIQ-GVKEYNLAGCKI-KKD 246 (367)
T ss_dssp HH---HCCSCSCEEEEESSCCTT---TTCEEESSTTSHHHHHHHHTTTCSCEEEEECCT-TCEEEEEEEEEE-TTE
T ss_pred HH---HhccCCCEEEEECCCCCC---CCEEEECCHHHHHHHHHHHHhcCCcEEEEeCCC-CCceeeEEEEEE-CCE
Confidence 22 346889999999887665 45678899887743 356999999997 3144 66666 665
No 41
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=97.54 E-value=0.00019 Score=64.86 Aligned_cols=99 Identities=10% Similarity=0.030 Sum_probs=71.3
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
.+.++ -++++++...|+..+.+.+++. .+.+|++..+++ .+++.+.+. .+.||+|+||....| +..
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~vvKp~~~~~---g~G 152 (422)
T 2xcl_A 86 GLHVFGPSKAAAIIEGSKQFAKDLMKKY-------DIPTAEYETFTS-FDEAKAYVQ--EKGAPIVIKADGLAA---GKG 152 (422)
T ss_dssp TCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEESSCGG---GTC
T ss_pred CCCEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--hcCCCEEEEeCCCCC---CCc
Confidence 45566 6778899999999999888764 477899988852 223333333 357999999987654 556
Q ss_pred EEEEeccccccC----------C---CCceeEEEeeecCcEEEEEEEe
Q 027466 179 LSLAYDQYSLKK----------L---EPPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 179 Maivf~~~gL~~----------l---~~P~VlQeFINH~gvlfKVYVi 213 (223)
+.++.+++.+.. + ..++++||||. |.=|-|.++
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~ 198 (422)
T 2xcl_A 153 VTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS--GEEFSLMAF 198 (422)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc--CcEEEEEEE
Confidence 788888766532 1 36899999999 567777777
No 42
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=97.53 E-value=0.00032 Score=63.35 Aligned_cols=100 Identities=12% Similarity=0.085 Sum_probs=71.3
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
.+.++ -++++++...|+..+.+.+++. .+.+|++..+++ .++..+.+. .+.||+|+||....| +..
T Consensus 85 gi~~~g~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~P~vvKp~~~~g---g~G 151 (417)
T 2ip4_A 85 GLLLFGPTQKAAMIEGSKAFAKGLMERY-------GIPTARYRVFRE-PLEALAYLE--EVGVPVVVKDSGLAA---GKG 151 (417)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------CCCBCCEEEESS-HHHHHHHHH--HHCSSEEEECTTSCS---STT
T ss_pred CCCEECccHHHHHHHcCHHHHHHHHHHc-------CCCCCCeeeeCC-HHHHHHHHH--HcCCCEEEEECCCCC---CCC
Confidence 45566 6788899999999998888764 477899988852 223233333 357999999977654 456
Q ss_pred EEEEeccccccC---------CCCceeEEEeeecCcEEEEEEEec
Q 027466 179 LSLAYDQYSLKK---------LEPPLVLQEFVNHGMQMAFGYLAD 214 (223)
Q Consensus 179 Maivf~~~gL~~---------l~~P~VlQeFINH~gvlfKVYViG 214 (223)
+.++.+++.|.+ ...++++||||. |.=|-|.+++
T Consensus 152 v~~v~~~~el~~~~~~~~~~~~~~~~lvEe~i~--g~E~sv~~~~ 194 (417)
T 2ip4_A 152 VTVAFDLHQAKQAVANILNRAEGGEVVVEEYLE--GEEATVLALT 194 (417)
T ss_dssp CEEESCHHHHHHHHHHHTTSSSCCCEEEEECCC--SCEEEEEEEE
T ss_pred EEEeCCHHHHHHHHHHHHhhccCCeEEEEECcc--CcEEEEEEEE
Confidence 778888766532 236899999998 5577777774
No 43
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=97.50 E-value=0.00025 Score=64.03 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=70.7
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
.+.++ -++++++...|+..+.+.+++. .+.+|++..+++ .++..+.+. .+.||+|+||....| +.-
T Consensus 86 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~PvvvKp~~g~g---g~G 152 (424)
T 2yw2_A 86 GLKIFGPNKEAAKLEGSKAFAKTFMKKY-------GIPTARYEVFTD-FEKAKEYVE--KVGAPIVVKADGLAA---GKG 152 (424)
T ss_dssp TCCEESCCTTTTHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEESSCCT---TCS
T ss_pred CCcEECcCHHHHHHHhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--HcCCcEEEEeCCCCC---CCC
Confidence 45566 6788999999999998888764 477899988852 223333333 367999999977644 567
Q ss_pred EEEEeccccccC----C---------CCceeEEEeeecCcEEEEEEEe
Q 027466 179 LSLAYDQYSLKK----L---------EPPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 179 Maivf~~~gL~~----l---------~~P~VlQeFINH~gvlfKVYVi 213 (223)
+.++.+++.|.+ + ..++++||||. |.=|-|.++
T Consensus 153 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--g~E~sv~~~ 198 (424)
T 2yw2_A 153 AVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE--GEEASYIVM 198 (424)
T ss_dssp EEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC--SEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CcEEEEEEE
Confidence 889998876632 1 25899999998 456666666
No 44
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=97.43 E-value=0.0004 Score=63.58 Aligned_cols=100 Identities=12% Similarity=0.108 Sum_probs=69.0
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccc-eEEeeecccCCCCCe
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVADGSAKSH 177 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP-~I~KplvA~Gs~~SH 177 (223)
.+.++ -++++++...|+..+.+.+++. .+.+|++..+++ .++..+.+. .+.|| +|+||....| +.
T Consensus 112 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~g~P~vvvKp~~~~g---g~ 178 (452)
T 2qk4_A 112 GVQCFGPTAEAAQLESSKRFAKEFMDRH-------GIPTAQWKAFTK-PEEACSFIL--SADFPALVVKASGLAA---GK 178 (452)
T ss_dssp TCCEESCCTTTTHHHHBHHHHHHHHHHT-------TCCBCCEEEESS-HHHHHHHHH--HCSSCEEEEEESBC------C
T ss_pred CCcEeCcCHHHHHHhcCHHHHHHHHHHC-------CCCCCCeEEECC-HHHHHHHHH--hCCCCeEEEEeCCCCC---CC
Confidence 45555 6677888888888888887763 477899988852 222233332 36899 9999977654 46
Q ss_pred eEEEEeccccccC----C---------CCceeEEEeeecCcEEEEEEEec
Q 027466 178 ELSLAYDQYSLKK----L---------EPPLVLQEFVNHGMQMAFGYLAD 214 (223)
Q Consensus 178 ~Maivf~~~gL~~----l---------~~P~VlQeFINH~gvlfKVYViG 214 (223)
.+.++.+++.|.+ + ..++++||||. |.=|-|.+++
T Consensus 179 Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~~ 226 (452)
T 2qk4_A 179 GVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD--GEEVSCLCFT 226 (452)
T ss_dssp CEEECSSHHHHHHHHHHHTTC-------CCEEEEECCC--SEEEEEEEEE
T ss_pred CEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC--CCeEEEEEEE
Confidence 7788888766532 1 36899999999 5677777774
No 45
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=97.42 E-value=0.00045 Score=63.34 Aligned_cols=99 Identities=7% Similarity=-0.007 Sum_probs=67.1
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
.+.++ -++++++...|+..+.+.+++. .+.+|++..+++ .+++.+.+. .+.||+|+||....|+ ..
T Consensus 107 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~~~~~~~~--~~~~PvVvKp~~~~gg---~G 173 (451)
T 2yrx_A 107 GLRIFGPSQRAALIEGSKAFAKELMKKY-------GIPTADHAAFTS-YEEAKAYIE--QKGAPIVIKADGLAAG---KG 173 (451)
T ss_dssp TCCEESCCHHHHHHHHCHHHHHHHHHHT-------TCCBCCEEEESC-HHHHHHHHH--HHCSSEEEEECC-------CC
T ss_pred CCCEeCccHHHHHHhhCHHHHHHHHHHc-------CCCCCCeEEECC-HHHHHHHHH--hcCCcEEEEeCCCCCC---Cc
Confidence 45555 5677888888888888887763 477899988852 223333333 3579999999987654 56
Q ss_pred EEEEeccccccC----C---------CCceeEEEeeecCcEEEEEEEe
Q 027466 179 LSLAYDQYSLKK----L---------EPPLVLQEFVNHGMQMAFGYLA 213 (223)
Q Consensus 179 Maivf~~~gL~~----l---------~~P~VlQeFINH~gvlfKVYVi 213 (223)
+.++.+++.+.. + ..++++||||. |.=|=|.++
T Consensus 174 v~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~--G~E~sv~~~ 219 (451)
T 2yrx_A 174 VTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE--GEEFSFMAF 219 (451)
T ss_dssp EEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC--SEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc--CcEEEEEEE
Confidence 788888766532 1 36899999999 556667666
No 46
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=97.42 E-value=0.00054 Score=62.20 Aligned_cols=129 Identities=8% Similarity=-0.011 Sum_probs=87.7
Q ss_pred CeeEEEeccCChHH-HHHHHHHHHhCCCeEEeC-ChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCC--C
Q 027466 74 PFDIVLHKLTGKEW-RQILEEYRQTHPEVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDAS--S 149 (223)
Q Consensus 74 pfDvILHKltd~~~-~~~lq~y~~~hP~v~VID-P~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~--~ 149 (223)
.+|+++-=+.+..- ...+|.+.+.. .+.++- ++.++...+|+..+.+.+++. .+.+|+++.+++... .
T Consensus 98 ~~D~vf~~lhG~~gEdg~iq~lle~~-gipy~G~~~~a~~~~~DK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~ 169 (372)
T 3tqt_A 98 SADCVFPMVHGTQGEDGALQGLLELL-NLPYVGANVQSSAVCMEKDLTKTVLRAG-------GIPVVDWHTLSPRDATEG 169 (372)
T ss_dssp CCSEEEECCCSTTTTSSHHHHHHHHT-TCCBSSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCCCEEECTTSCCTT
T ss_pred CCCEEEEcCCCCCCcCHHHHHHHHHc-CCCeeCcCHHHHHHHhCHHHHHHHHHHC-------CcCCCCEEEEechhhhhh
Confidence 57888766644310 11345555554 566664 467899999999999998864 478999999964322 1
Q ss_pred chHHHHhcCCccc-eEEeeecccCCCCCeeEEEEeccccccC-------CCCceeEEEeeecCcEEEEEEEecce
Q 027466 150 IPDVVLKAGLTLP-LVAKPLVADGSAKSHELSLAYDQYSLKK-------LEPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 150 ~~~~l~~agl~fP-~I~KplvA~Gs~~SH~Maivf~~~gL~~-------l~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
..+.. ...+.|| +|+||....| |--+.++.+++.|.. ...++++||||. |.=|-|-|+|+.
T Consensus 170 ~~~~~-~~~lg~P~vvVKP~~ggs---s~Gv~~v~~~~eL~~a~~~a~~~~~~vlVEe~I~--G~E~~v~vl~~~ 238 (372)
T 3tqt_A 170 VYQRL-LDRWGTSELFVKAVSLGS---SVATLPVKTETEFTKAVKEVFRYDDRLMVEPRIR--GREIECAVLGNG 238 (372)
T ss_dssp HHHHH-HHHC---CEEEEESSCCS---GGGEEEECSHHHHHHHHHHHTTTCSCEEEEECCC--SEEEEEEEEESS
T ss_pred HHHHH-HHhcCCCeEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhcCCCEEEECCCC--CEEEEEEEEeCC
Confidence 12222 2358899 9999987544 567889999887742 357999999998 688888999876
No 47
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=97.36 E-value=0.00031 Score=64.23 Aligned_cols=102 Identities=9% Similarity=0.161 Sum_probs=71.7
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEEeeecccCCCCC
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~S 176 (223)
.+.++ -++++++.+.|+..+.+.+++. .+.+|++. .++ +.+++.+..+ .+.||+|+||.... .+
T Consensus 103 g~~~~g~~~~~~~~~~dK~~~~~~l~~~-------Gip~p~~~~~~~~-~~~e~~~~~~--~~g~PvvvKp~~g~---gg 169 (446)
T 3ouz_A 103 NIKFIGPSVEAMNLMSDKSKAKQVMQRA-------GVPVIPGSDGALA-GAEAAKKLAK--EIGYPVILKAAAGG---GG 169 (446)
T ss_dssp TCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSSCC-SHHHHHHHHH--HHCSSEEEEETTCC---TT
T ss_pred CCceECcCHHHHHHhCCHHHHHHHHHHc-------CCCcCCCcccCCC-CHHHHHHHHH--HhCCCEEEEECCCC---CC
Confidence 46666 6789999999999999988764 46778876 443 2223233332 36799999998655 45
Q ss_pred eeEEEEeccccccCC-------------CCceeEEEeeecCcEEEEEEEecc
Q 027466 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 177 H~Maivf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
..|.++.+++.|.+. ..++++||||... .=|=|.+++|
T Consensus 170 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~d 220 (446)
T 3ouz_A 170 RGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP-RHIEVQVIGD 220 (446)
T ss_dssp CSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC-EEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC-cEEEEEEEEc
Confidence 678899999887432 5799999999853 3455556654
No 48
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=97.35 E-value=0.0032 Score=58.88 Aligned_cols=124 Identities=13% Similarity=0.161 Sum_probs=82.3
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhc
Q 027466 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADM 126 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l 126 (223)
..+.++|++.|++.|-. +++. ....+.+..++. .+. -.++++++...|+..+.+.+++.
T Consensus 92 ~~I~~~a~~~~id~Vip------------------~sE~-~l~~~a~~~e~~-Gi~-g~~~~ai~~~~DK~~~k~~l~~~ 150 (474)
T 3vmm_A 92 EQIVKVAEMFGADAITT------------------NNEL-FIAPMAKACERL-GLR-GAGVQAAENARDKNKMRDAFNKA 150 (474)
T ss_dssp HHHHHHHHHTTCSEEEE------------------SCGG-GHHHHHHHHHHT-TCC-CSCHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEEE------------------CCcc-cHHHHHHHHHHc-CCC-CCCHHHHHHhhCHHHHHHHHHHc
Confidence 45677888888764432 3333 112233333332 333 67899999999999999998864
Q ss_pred cccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC----------------
Q 027466 127 NLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK---------------- 190 (223)
Q Consensus 127 ~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~---------------- 190 (223)
.+.+|++..+++ .++..+.. ..+.||+|+||....|+ ..|.++.+++.|.+
T Consensus 151 -------GIpvp~~~~v~s-~ee~~~~~--~~lg~PvVVKP~~g~gg---~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~ 217 (474)
T 3vmm_A 151 -------GVKSIKNKRVTT-LEDFRAAL--EEIGTPLILKPTYLASS---IGVTLITDTETAEDEFNRVNDYLKSINVPK 217 (474)
T ss_dssp -------TSCCCCEEEECS-HHHHHHHH--HHSCSSEEEEESSCCTT---TTCEEECCTTSHHHHHHHHHHHHTTSCCCT
T ss_pred -------CCCCCCeEEECC-HHHHHHHH--HHcCCCEEEEECCCCcC---ceEEEECCHHHHHHHHHHHHHHHhhccccc
Confidence 478899988853 22222222 24789999999876655 45678999877632
Q ss_pred ---CCCceeEEEeeecC
Q 027466 191 ---LEPPLVLQEFVNHG 204 (223)
Q Consensus 191 ---l~~P~VlQeFINH~ 204 (223)
...++++||||.-.
T Consensus 218 a~~~~~~vlVEe~I~G~ 234 (474)
T 3vmm_A 218 AVTFEAPFIAEEFLQGE 234 (474)
T ss_dssp TCCCSCSEEEEECCCBC
T ss_pred cccCCCeEEEEeCCCCc
Confidence 24689999999843
No 49
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.35 E-value=0.00052 Score=68.42 Aligned_cols=146 Identities=11% Similarity=0.057 Sum_probs=99.9
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhc
Q 027466 47 PKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADM 126 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l 126 (223)
+.+++.|+++||+++.++.+.|+..-|--|-+ +.+ .....+.-++..++...-|+..+.+.+.+.
T Consensus 436 ~~Iv~~A~~~gid~~vlg~e~~l~~lg~~~~~-~~i--------------g~~~~t~~~s~~aa~~~~DK~~tk~lL~~~ 500 (757)
T 3ln7_A 436 QALLFDVIQKGIHTEILDENDQFLCLKYGDHI-EYV--------------KNGNMTSHDSYISPLIMENKVVTKKVLQKA 500 (757)
T ss_dssp HHHHHHHHHHTCEEEEEETTTTEEEEEETTEE-EEE--------------ETTTBCSSSBSHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEECCCHHHHHhcccccc-eee--------------ccCccCCCCHHHHHHHhcCHHHHHHHHHHC
Confidence 35778999999999999998886533211111 110 011234456777777777998888888763
Q ss_pred cccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEE----eccccccC-------CCCce
Q 027466 127 NLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLA----YDQYSLKK-------LEPPL 195 (223)
Q Consensus 127 ~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maiv----f~~~gL~~-------l~~P~ 195 (223)
.|.+|++.++++ .++..+.. ...+.||+|+||....|+ .-+.++ .+.+.+.+ ...++
T Consensus 501 -------GIPvP~~~~~~~-~~ea~~~~-~~~~g~PvVVKP~~g~~G---~GV~iv~~~v~~~eel~~al~~a~~~~~~v 568 (757)
T 3ln7_A 501 -------GFNVPQSVEFTS-LEKAVASY-ALFENRAVVIKPKSTNYG---LGITIFQQGVQNREDFAKALEIAFREDKEV 568 (757)
T ss_dssp -------TCCCCCEEEESC-HHHHHHGG-GGSSSSCEEEEESSCSTT---TTCEECSSCCCCHHHHHHHHHHHHHHCSSE
T ss_pred -------CcCCCCEEEECC-HHHHHHHH-HHhcCCCEEEEeCCCCCC---CCeEEecCCCCCHHHHHHHHHHHHhcCCcE
Confidence 478899998852 11211222 135789999999886664 456777 67666542 25689
Q ss_pred eEEEeeecCcEEEEEEEecceEEEEE
Q 027466 196 VLQEFVNHGMQMAFGYLADIHYIIFI 221 (223)
Q Consensus 196 VlQeFINH~gvlfKVYViG~~~~v~~ 221 (223)
++||||. |.=|-|+|+|+++.-++
T Consensus 569 lVEefI~--G~Ei~v~Vlggkvvaai 592 (757)
T 3ln7_A 569 MVEDYLV--GTEYRFFVLGDETLAVL 592 (757)
T ss_dssp EEEECCC--SEEEEEEEETTEEEEEE
T ss_pred EEEEcCC--CcEEEEEEECCEEEEEE
Confidence 9999995 68999999999887654
No 50
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=97.30 E-value=0.0015 Score=56.31 Aligned_cols=130 Identities=19% Similarity=0.246 Sum_probs=80.8
Q ss_pred hhHHhHHHhcCcEEEEeeCCCCC--------CCC---CC-e---------eEEEeccCChHH-HHHHHHHHHhCCCeEEe
Q 027466 47 PKLEGLARNKGILFVAIDQNRPL--------SDQ---GP-F---------DIVLHKLTGKEW-RQILEEYRQTHPEVTVL 104 (223)
Q Consensus 47 ~~~~~~~~~~gi~fv~iD~~~pl--------~~Q---gp-f---------DvILHKltd~~~-~~~lq~y~~~hP~v~VI 104 (223)
..+...+++.|+..+.+|.+.+. .+. .+ + |+|+ ..++.. ...++.. + .-.+.++
T Consensus 14 ~~l~~a~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~d~i~--~~~e~~~~~~~~~l-e-~~g~~~~ 89 (334)
T 2r85_A 14 LQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVV--PTGSFVAHLGIELV-E-NMKVPYF 89 (334)
T ss_dssp HHHHHHHHHTTCCEEEESCGGGHHHHHTTSCCCSEEECSSCCHHHHHHTTEEEC--CCTTHHHHHCHHHH-H-TCCSCBB
T ss_pred HHHHHHHHhCCCEEEEEECCCCCcccccccccCceEecCCcChHHhcccCCEEE--ECcchhhhhHHHHH-H-HcCCCcc
Confidence 35667788899999999987421 111 12 2 5554 112211 1112222 2 2355566
Q ss_pred CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEec
Q 027466 105 DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYD 184 (223)
Q Consensus 105 DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~ 184 (223)
-++++++...|+..+.+.+++. .+.+|++ ++ +.+ .+.||+|+||....|+. .+.++.+
T Consensus 90 ~~~~~~~~~~dK~~~~~~l~~~-------gip~p~~--~~-~~~---------~l~~P~vvKP~~g~~s~---Gv~~v~~ 147 (334)
T 2r85_A 90 GNKRVLRWESDRNLERKWLKKA-------GIRVPEV--YE-DPD---------DIEKPVIVKPHGAKGGK---GYFLAKD 147 (334)
T ss_dssp SCTTHHHHHHSHHHHHHHHHHT-------TCCCCCB--CS-CGG---------GCCSCEEEEECC----T---TCEEESS
T ss_pred CCHHHHHHHHhHHHHHHHHHHc-------CCCCCCc--cC-ChH---------HcCCCEEEEeCCCCCCC---CEEEECC
Confidence 7789999999999998888763 3667887 32 211 24699999999877654 4567888
Q ss_pred cccccCC----------C--CceeEEEeee
Q 027466 185 QYSLKKL----------E--PPLVLQEFVN 202 (223)
Q Consensus 185 ~~gL~~l----------~--~P~VlQeFIN 202 (223)
++.|... . .++++||||+
T Consensus 148 ~~el~~~~~~~~~~~~~~~~~~~lvee~i~ 177 (334)
T 2r85_A 148 PEDFWRKAEKFLGIKRKEDLKNIQIQEYVL 177 (334)
T ss_dssp HHHHHHHHHHHHCCCSGGGCCSEEEEECCC
T ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEeccC
Confidence 8766321 2 7899999998
No 51
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=97.29 E-value=0.00069 Score=61.46 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=71.4
Q ss_pred EEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEE
Q 027466 102 TVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSL 181 (223)
Q Consensus 102 ~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Mai 181 (223)
++--++++++...||..+.+.+++. .+.+|++..+++ .++..+.+ ..+.||+|+||....| +.-+.+
T Consensus 93 ~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~-~~e~~~~~--~~~g~PvvvKp~~~~g---g~Gv~~ 159 (412)
T 1vkz_A 93 VFGPVKEVARLEGSKVYAKRFMKKY-------GIRTARFEVAET-PEELREKI--KKFSPPYVIKADGLAR---GKGVLI 159 (412)
T ss_dssp BSSCCHHHHHHHHCHHHHHHHHHHT-------TCCCCCEEEESS-HHHHHHHH--TTSCSSEEEEESSCCS---SCCEEE
T ss_pred hhCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCEEEECC-HHHHHHHH--HhcCCCEEEEeCCCCC---CCCEEE
Confidence 4446788999999999999988864 477899988852 22222222 3578999999987654 467889
Q ss_pred EeccccccC-----------CC--CceeEEEeeecCcEEEEEEEecc
Q 027466 182 AYDQYSLKK-----------LE--PPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 182 vf~~~gL~~-----------l~--~P~VlQeFINH~gvlfKVYViG~ 215 (223)
+.+++.|.+ +. .++++||||. |.=|=|.+++|
T Consensus 160 v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~--G~E~sv~~~~d 204 (412)
T 1vkz_A 160 LDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA--GNELSAMAVVN 204 (412)
T ss_dssp ESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC--SEEEEEEEEEE
T ss_pred ECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc--CcEEEEEEEEC
Confidence 998866532 11 3899999999 57777777743
No 52
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.27 E-value=0.00072 Score=69.26 Aligned_cols=154 Identities=15% Similarity=0.194 Sum_probs=97.6
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCCC---C---------------------CCeeEEEeccCCh---HHHHHHHH--HHHhC
Q 027466 48 KLEGLARNKGILFVAIDQNRPLSD---Q---------------------GPFDIVLHKLTGK---EWRQILEE--YRQTH 98 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~~---Q---------------------gpfDvILHKltd~---~~~~~lq~--y~~~h 98 (223)
.+...+++.|+..+.+|.+..... + ..+|+|+==+-+. .....+.+ ..+++
T Consensus 32 ~~~~al~~~G~~vv~v~~~~~~~~~~~~~ad~~~i~p~~~e~i~~i~~~~~~D~V~p~~g~~~~l~~~~~l~~~~~le~~ 111 (1073)
T 1a9x_A 32 QACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEF 111 (1073)
T ss_dssp HHHHHHHHHTCEEEEECSCTTCGGGCGGGSSEEECSCCCHHHHHHHHHHHCCSEEECSSSHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEECCCCHHHHHHHHHHhCCCEEEeccCCchHHHHHHHHHHhhHHHHc
Confidence 366677889999999997644210 0 1234443222111 11111111 22232
Q ss_pred CCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCe
Q 027466 99 PEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (223)
Q Consensus 99 P~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH 177 (223)
.+.++ -++++++...||..+.+.++++ .+.+|++..+++ .++..+... .+.||+|+||....|+.
T Consensus 112 -gv~~~G~~~~ai~~~~DK~~~k~~l~~~-------Gipvp~~~~v~~-~~ea~~~~~--~ig~PvVvKp~~~~Gg~--- 177 (1073)
T 1a9x_A 112 -GVTMIGATADAIDKAEDRRRFDVAMKKI-------GLETARSGIAHT-MEEALAVAA--DVGFPCIIRPSFTMGGS--- 177 (1073)
T ss_dssp -TCEECSSCHHHHHHHHSHHHHHHHHHHT-------TCCCCSEEEESS-HHHHHHHHH--HHCSSEEEEETTCCTTT---
T ss_pred -CCeeeCCCHHHHHHhhCHHHHHHHHHHC-------CcCCCCEEEECC-HHHHHHHHH--HcCCCEEEEECCCCCCC---
Confidence 46666 7789999999999999988864 477899998853 222222222 36799999999887754
Q ss_pred eEEEEeccccccCC---------CCceeEEEeeecCcEEEEEEEecce
Q 027466 178 ELSLAYDQYSLKKL---------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 178 ~Maivf~~~gL~~l---------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
.+.++.+++.|.+. ..++++||||.. ..=|-|-|++|.
T Consensus 178 Gv~iv~~~eel~~~~~~~~~~~~~~~vlvEe~I~G-~~E~~v~v~~d~ 224 (1073)
T 1a9x_A 178 GGGIAYNREEFEEICARGLDLSPTKELLIDESLIG-WKEYEMEVVRDK 224 (1073)
T ss_dssp TCEEESSHHHHHHHHHHHHHHCTTSCEEEEECCTT-SEEEEEEEEECT
T ss_pred ceEEeCCHHHHHHHHHHHHhhCCCCcEEEEEccCC-CeEEEEEEEEeC
Confidence 56689998776432 248999999983 355667777764
No 53
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=97.16 E-value=0.0034 Score=64.29 Aligned_cols=102 Identities=19% Similarity=0.329 Sum_probs=63.8
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
.+.++ -++++++...||..+.+.++++ .+.+|++..+++ .++..+... .+.||+|+||....|+ ..
T Consensus 658 Gi~i~G~~~~ai~~~~DK~~~~~ll~~~-------GIp~P~~~~~~s-~eea~~~~~--~ig~PvvVKP~~~~gG---~G 724 (1073)
T 1a9x_A 658 GVPVIGTSPDAIDRAEDRERFQHAVERL-------KLKQPANATVTA-IEMAVEKAK--EIGYPLVVRASYVLGG---RA 724 (1073)
T ss_dssp TCCBCSSCHHHHHHHHSHHHHHHHHHHH-------TCCCCCEEECCS-HHHHHHHHH--HHCSSEEEEC----------C
T ss_pred CCCeeCCCHHHHHHhhCHHHHHHHHHHc-------CcCCCCceEECC-HHHHHHHHH--HcCCCEEEEECCCCCC---CC
Confidence 34444 5688999999999999988765 467899988752 222222222 3679999999987654 57
Q ss_pred EEEEeccccccCC---------CCceeEEEeeecCcEEEEEEEecc
Q 027466 179 LSLAYDQYSLKKL---------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 179 Maivf~~~gL~~l---------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
|.++.+++.|.+. ..|+++|+||+.. .=|=|-+++|
T Consensus 725 v~iv~~~~el~~~~~~a~~~~~~~~vlvEefI~g~-~E~~V~~l~d 769 (1073)
T 1a9x_A 725 MEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDA-VEVDVDAICD 769 (1073)
T ss_dssp EEEECSHHHHHHHHHHCC--------EEEBCCTTC-EEEEEEEEEC
T ss_pred eEEECCHHHHHHHHHHHHhhCCCCcEEEEEccCCC-cEEEEEEEEE
Confidence 9999998877421 3599999999854 3444555543
No 54
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=97.09 E-value=0.0014 Score=59.94 Aligned_cols=102 Identities=5% Similarity=0.129 Sum_probs=69.4
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEEeeecccCCCCC
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~S 176 (223)
.+.++ -++++++...|+..+.+.+++. .+.+|++. .++ +.++..+.+. .+.||+|+||....|+
T Consensus 104 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------Gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~gg--- 170 (461)
T 2dzd_A 104 GIIFIGPNENHLDMFGDKVKARHAAVNA-------GIPVIPGSDGPVD-GLEDVVAFAE--AHGYPIIIKAALGGGG--- 170 (461)
T ss_dssp TCEESSCCHHHHHHTTSHHHHHHHHHHT-------TCCBCCBCSSCCS-SHHHHHHHHH--HHCSCEEEEESTTCSS---
T ss_pred CCEEECCCHHHHHHhhCHHHHHHHHHHc-------CCCCCCCcccCcC-CHHHHHHHHH--hcCCcEEEEeCCCCCC---
Confidence 45544 5588899999999998888764 46778876 443 2222222332 3679999999987654
Q ss_pred eeEEEEeccccccC------------C-CCceeEEEeeecCcEEEEEEEecc
Q 027466 177 HELSLAYDQYSLKK------------L-EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 177 H~Maivf~~~gL~~------------l-~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
..+.++.+++.|.+ + ..++++||||.- +.=|-|-+++|
T Consensus 171 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 221 (461)
T 2dzd_A 171 RGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIEN-PKHIEVQILGD 221 (461)
T ss_dssp SSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCS-CEEEEEEEEEC
T ss_pred CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCC-CeEEEEEEEEc
Confidence 56788999877642 1 468999999984 34455666654
No 55
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=96.95 E-value=0.001 Score=60.57 Aligned_cols=102 Identities=8% Similarity=0.103 Sum_probs=69.2
Q ss_pred CeEEeC-ChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCc-hHHHHhcCCccceEEeeecccCCCC
Q 027466 100 EVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSI-PDVVLKAGLTLPLVAKPLVADGSAK 175 (223)
Q Consensus 100 ~v~VID-P~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~-~~~l~~agl~fP~I~KplvA~Gs~~ 175 (223)
.+.++- ++++++...|+..+.+.+++. .+.+|++. .++ +.++. .+.+. .+.||+|+||....|+
T Consensus 99 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~~--~~g~PvvvKp~~g~gg-- 166 (449)
T 2w70_A 99 GFIFIGPKAETIRLMGDKVSAIAAMKKA-------GVPCVPGSDGPLG-DDMDKNRAIAK--RIGYPVIIKASGGGGG-- 166 (449)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHH-------TCCBCSBCSSCCC-SCHHHHHHHHH--HHCSSEEEEETTCCTT--
T ss_pred CCceECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccccC-CHHHHHHHHHH--HhCCcEEEEECCCCCC--
Confidence 455544 588999999999998888764 36678876 553 22333 33333 3679999999887655
Q ss_pred CeeEEEEeccccccCC-------------CCceeEEEeeecCcEEEEEEEecc
Q 027466 176 SHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 176 SH~Maivf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
..+.++.+++.|.+. ..++++||||.- +.=|-|.++++
T Consensus 167 -~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~~~~~ 217 (449)
T 2w70_A 167 -RGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLEN-PRHVEIQVLAD 217 (449)
T ss_dssp -TTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSS-CEEEEEEEEEC
T ss_pred -CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCC-CeEEEEEEEEc
Confidence 456788888766421 469999999974 34455666643
No 56
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=96.65 E-value=0.0015 Score=59.55 Aligned_cols=102 Identities=13% Similarity=0.178 Sum_probs=68.9
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEEeeecccCCCCC
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~S 176 (223)
.+.++ -++++++...|+..+.+.+++. .+.+|++. .++ +.++..+.+. .+.||+|+||....|+
T Consensus 98 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~gg--- 164 (451)
T 1ulz_A 98 GITFIGPHWKVIELMGDKARSKEVMKKA-------GVPVVPGSDGVLK-SLEEAKALAR--EIGYPVLLKATAGGGG--- 164 (451)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSSCC-CHHHHHHHHH--HHCSSEEEEECSSSSC---
T ss_pred CCeEECcCHHHHHHhcCHHHHHHHHHHc-------CCCCCCCcccccC-CHHHHHHHHH--HcCCCEEEEECCCCCC---
Confidence 45555 5588889999999998888764 36678876 443 2223233332 3679999999887654
Q ss_pred eeEEEEeccccccC------------C-CCceeEEEeeecCcEEEEEEEecc
Q 027466 177 HELSLAYDQYSLKK------------L-EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 177 H~Maivf~~~gL~~------------l-~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
..+.++.+++.|.+ + ..++++||||..+ .=|-|.++++
T Consensus 165 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~-~e~~v~v~~~ 215 (451)
T 1ulz_A 165 RGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP-KHIEYQVLGD 215 (451)
T ss_dssp CSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC-EEEEEEEEEC
T ss_pred ccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC-eEEEEEEEEc
Confidence 45678888776632 1 4689999999753 4455666654
No 57
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=96.61 E-value=0.0022 Score=57.56 Aligned_cols=131 Identities=8% Similarity=0.015 Sum_probs=74.8
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCC---CCCCeeE--EEecc------CCh-----HHHHH--HHHHHHhCCCeEEeCChhh
Q 027466 48 KLEGLARNKGILFVAIDQNRPLS---DQGPFDI--VLHKL------TGK-----EWRQI--LEEYRQTHPEVTVLDPPYA 109 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~---~QgpfDv--ILHKl------td~-----~~~~~--lq~y~~~hP~v~VIDP~~~ 109 (223)
.+...|++.|+..+.+|.+.+-. .....|- ++.+. .|. ++... ++.. + .-.+.+..+.++
T Consensus 15 ~~~~aAk~lG~~viv~d~~~~~p~~~a~~~ad~~~~~~~~~dl~~~~dvitpe~e~v~~~~l~~l-e-~~~~p~~p~~~~ 92 (320)
T 2pbz_A 15 QILLGAKKEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEMTSILNDDGIVVPHGSFVAYLGIEAI-E-KAKARFFGNRRF 92 (320)
T ss_dssp HHHHHHHHTTCCEEEEECTTTHHHHHTCTTCSEEEECSCSCCTTCCSSBCCCBTTHHHHSCHHHH-H-TCCSCCBSCSSG
T ss_pred HHHHHHHHCCCEEEEEECCCCCccchhhhcCCeEEECCcHHHHHhcCCEEEecccchhHHHHHHH-H-HcCCCcCCCHHH
Confidence 45667888999999999875321 1111111 11111 121 22211 2222 2 235678888899
Q ss_pred HHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEecccccc
Q 027466 110 IQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLK 189 (223)
Q Consensus 110 i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~ 189 (223)
++...||...-+.++++ .+.+|++.. .+++ .+.||+|+||..+. +++-..++.+ +.|.
T Consensus 93 l~~~~dr~~~~~~l~~~-------Gip~P~~~~----~ee~-------~i~~PviVKp~~g~---ggkG~~~v~~-eel~ 150 (320)
T 2pbz_A 93 LKWETTFELQDKALEGA-------GIPRVEVVE----PEDA-------KPDELYFVRIEGPR---GGSGHFIVEG-SELE 150 (320)
T ss_dssp GGGGSCHHHHHHHHHHH-------TCCBCCBCC----SCCC-------CSSCCEEEECC---------------C-EECS
T ss_pred HHHHHhHHHHHHHHHHC-------CcCCCCeeC----HhHc-------CcCCcEEEEECCCC---CCCCEEEECh-HHHH
Confidence 99999998766777664 477788772 2232 47899999998875 4788889999 8886
Q ss_pred CC----CCceeEEEeee
Q 027466 190 KL----EPPLVLQEFVN 202 (223)
Q Consensus 190 ~l----~~P~VlQeFIN 202 (223)
.. ..++++||||+
T Consensus 151 ~~~~~~~~~~IiEEfI~ 167 (320)
T 2pbz_A 151 ERLSTLEEPYRVERFIP 167 (320)
T ss_dssp CCCC----CCEEEECCC
T ss_pred HHHHhcCCCEEEEeeec
Confidence 43 25899999998
No 58
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=96.44 E-value=0.0041 Score=58.90 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=67.1
Q ss_pred eEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEE-----ccC-----------------CCCchHHHH-h
Q 027466 101 VTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-----ERD-----------------ASSIPDVVL-K 156 (223)
Q Consensus 101 v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i-----~~~-----------------~~~~~~~l~-~ 156 (223)
+.++ -++++++.+.|+..+.+.+++. .+.+|++..+ +.+ ..+..+.++ .
T Consensus 158 i~~~gp~~~a~~~~~dK~~~k~~l~~~-------GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~ 230 (554)
T 1w96_A 158 VIFIGPPGNAMRSLGDKISSTIVAQSA-------KVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKA 230 (554)
T ss_dssp CEESSCCHHHHHHSCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHH
T ss_pred EEEeCCCHHHHHHHhCHHHHHHHHHHC-------CCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 4444 3456889999999998888764 3556665432 000 012112111 1
Q ss_pred cCCccceEEeeecccCCCCCeeEEEEeccccccCC---------CCceeEEEeeecCcEEEEEEEecce
Q 027466 157 AGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 157 agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l---------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
..+.||+|+||....|+ ..+.++.+++.|... ..++++||||.. +.=|=|.+++|.
T Consensus 231 ~~~g~PvVvKp~~g~gg---~Gv~~v~~~~el~~a~~~~~~~~~~~~vlvEe~i~g-~~e~sv~vl~d~ 295 (554)
T 1w96_A 231 KRIGFPVMIKASEGGGG---KGIRQVEREEDFIALYHQAANEIPGSPIFIMKLAGR-ARHLEVQLLADQ 295 (554)
T ss_dssp HHHCSSEEEEETTCCTT---TTEEEECSHHHHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEECT
T ss_pred HHcCCCEEEEECCCCCC---ceEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEcC
Confidence 24679999999887654 567889998776431 468999999984 455566677653
No 59
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=96.44 E-value=0.0032 Score=57.31 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=68.5
Q ss_pred CeEEeC-ChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEEeeecccCCCCC
Q 027466 100 EVTVLD-PPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (223)
Q Consensus 100 ~v~VID-P~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~S 176 (223)
.+.++- ++++++...|+..+.+.+++. .+.+|++. .++ +.+++.+.++ .+.||+|+||....| +
T Consensus 98 gi~~~g~~~~~~~~~~dK~~~k~~l~~~-------gip~p~~~~~~~~-~~~~~~~~~~--~~g~PvvvKp~~g~g---g 164 (451)
T 2vpq_A 98 QLKFIGPSYQSIQKMGIKDVAKAEMIKA-------NVPVVPGSDGLMK-DVSEAKKIAK--KIGYPVIIKATAGGG---G 164 (451)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCSBCSSCBS-CHHHHHHHHH--HHCSSEEEEETTCCT---T
T ss_pred CCeEECCCHHHHHHhcCHHHHHHHHHHc-------CCCcCCCcccCcC-CHHHHHHHHH--hcCCcEEEEECCCCC---C
Confidence 566555 488999999999999988764 36677765 443 2223333333 357999999988665 4
Q ss_pred eeEEEEeccccccCC-------------CCceeEEEeeecCcEEEEEEEecc
Q 027466 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 177 H~Maivf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
..+.++.+++.|.+. ..++++||||.. +.=|-|-++++
T Consensus 165 ~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g-~~e~~v~v~~~ 215 (451)
T 2vpq_A 165 KGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIEN-FRHIEIQIVGD 215 (451)
T ss_dssp CSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCS-EEEEEEEEEEC
T ss_pred CCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCC-CeEEEEEEEEc
Confidence 567788888665321 468999999985 33455555543
No 60
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=96.42 E-value=0.0052 Score=58.63 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=66.9
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEE----Ecc---------------------CCCCchHH
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV----IER---------------------DASSIPDV 153 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~----i~~---------------------~~~~~~~~ 153 (223)
.+.++ -++++++.+.|+..+.+.+++. .+.+|++.. ++. ...+..+.
T Consensus 148 Gi~~iGp~~~ai~~~~DK~~~k~ll~~~-------GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea 220 (540)
T 3glk_A 148 GVAFLGPPSEAMWALGDKIASTVVAQTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 220 (540)
T ss_dssp TCEESSCCHHHHC---CHHHHHHHHHHT-------TCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHH
T ss_pred CCceeCCCHHHHHHhCCHHHHHHHHHHc-------CCCCCCcccccccccccccccccccccccccccccccCcCCHHHH
Confidence 67777 7888899999999999988764 356666543 000 01111111
Q ss_pred HH-hcCCccceEEeeecccCCCCCeeEEEEeccccccCC---------CCceeEEEeeecCcEEEEEEEecce
Q 027466 154 VL-KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 154 l~-~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l---------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
.+ ...+.||+|+||....| +.-|.++.+++.|.+. ..++++|+||.. +.=+=|-|+||.
T Consensus 221 ~~~a~~igyPvVVKp~~ggG---G~Gv~iv~~~~eL~~a~~~~~~~~~~~~vlVEe~I~g-~rei~V~vl~d~ 289 (540)
T 3glk_A 221 LEAAERIGFPLMIKASEGGG---GKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILADQ 289 (540)
T ss_dssp HHHHHHHCSSEEEEETTCC-------EEEECSTTTHHHHHHHHHHHSTTCCEEEEECCSS-EEEEEEEEEECT
T ss_pred HHHHHhcCCcEEEEECCCCC---CCCEEEECCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEcC
Confidence 11 12478999999987655 5679999999887432 468999999964 456667777764
No 61
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=96.35 E-value=0.0061 Score=59.00 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=71.8
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEE--E--c---------------------cCCCCchHH
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLV--I--E---------------------RDASSIPDV 153 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~--i--~---------------------~~~~~~~~~ 153 (223)
.+.++ -++++++.+.|+..+.+.+++. .|.+|++.. + + ....+..+.
T Consensus 164 Gi~~iGp~~~ai~~~~DK~~ak~ll~~a-------GVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea 236 (587)
T 3jrx_A 164 GVAFLGPPSEAMWALGDKIASTVVAQTL-------QVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEG 236 (587)
T ss_dssp TCEESSCCHHHHHHHCSHHHHHHHHHHT-------TCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHH
T ss_pred CCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CCCCCCeecccccccccccccccccccccchhhccccccCCHHHH
Confidence 67777 7888999999999999988764 355565543 0 0 001121111
Q ss_pred HH-hcCCccceEEeeecccCCCCCeeEEEEeccccccCC---------CCceeEEEeeecCcEEEEEEEecce
Q 027466 154 VL-KAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKL---------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 154 l~-~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~l---------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
.+ ...+.||+|+||....| +.-|.++.+++.|.+. ..++++|+||.. +.=|=|-|+||.
T Consensus 237 ~~~a~~iGyPvVVKp~~GgG---GkGv~iV~s~eEL~~a~~~a~~~~~~~~vlVEeyI~g-~rei~V~vl~D~ 305 (587)
T 3jrx_A 237 LEAAERIGFPLMIKASEGGG---GKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQH-ARHLEVQILADQ 305 (587)
T ss_dssp HHHHHHHCSSEEEEETTCCS---SSSEEEECSTTTHHHHHHHHHHHSTTCCEEEEECCCS-CEEEEEEEEECS
T ss_pred HHHHHhcCCeEEEEeCCCCC---CCCeEEeCCHHHHHHHHHHHHhhccCCCEEEEEecCC-CcEEEEEEEEcC
Confidence 11 12478999999987665 4568999999887432 469999999974 456667777764
No 62
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=96.25 E-value=0.0042 Score=60.82 Aligned_cols=103 Identities=10% Similarity=0.131 Sum_probs=65.7
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEE-ccCCCCchHHHHhcCCccceEEeeecccCCCCCe
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVI-ERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i-~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH 177 (223)
.+.++ -|+++++.+.|+..+.+.+++. .+.+|++... ..+.++..+... .+.||+|+||....| +.
T Consensus 125 Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GVpvpp~~~~~~~s~~e~~~~a~--~igyPvvvKp~~G~G---g~ 192 (675)
T 3u9t_A 125 GLLFLGPPAAAIDAMGSKSAAKALMEEA-------GVPLVPGYHGEAQDLETFRREAG--RIGYPVLLKAAAGGG---GK 192 (675)
T ss_dssp TCEESSCCHHHHHHHTSHHHHHHHHHHT-------TCCBCCCCCSCCCCTTHHHHHHH--HSCSSBCCBCCC--------
T ss_pred CCceeCCCHHHHHHhchHHHHHHHHHHc-------CcCcCCccccCCCCHHHHHHHHH--hCCCcEEEEECCCCC---Cc
Confidence 45555 6789999999999999888764 4667776542 123334333333 367999999997665 45
Q ss_pred eEEEEeccccccC----C---------CCceeEEEeeecCcEEEEEEEecc
Q 027466 178 ELSLAYDQYSLKK----L---------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 178 ~Maivf~~~gL~~----l---------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
-|.++.+++.|.+ + ..++++|+||.-. .=+=|-|++|
T Consensus 193 Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~-reiev~v~~d 242 (675)
T 3u9t_A 193 GMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP-RHVEIQVFAD 242 (675)
T ss_dssp -CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC-BCEEEEEEEC
T ss_pred cEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC-cEEEEEEEEc
Confidence 6888999877632 1 3589999999853 3334444544
No 63
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.18 E-value=0.00099 Score=48.43 Aligned_cols=64 Identities=17% Similarity=0.431 Sum_probs=42.2
Q ss_pred cccCCceE--EEccCCCCchHHHHhcCCccceEEeeecccCCCCCeeEEEEeccccccC------------C-CCceeEE
Q 027466 134 KVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK------------L-EPPLVLQ 198 (223)
Q Consensus 134 ~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~Maivf~~~gL~~------------l-~~P~VlQ 198 (223)
.+.+|+++ .++ +.++..+... .+.||+|+||....|+ ..+.++.+++.|.. . ..++++|
T Consensus 20 gip~p~~~~~~~~-~~~~~~~~~~--~~~~P~vvKp~~~~~~---~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lve 93 (108)
T 2cqy_A 20 EVNTIPGFDGVVK-DAEEAVRIAR--EIGYPVMIKASAGGGG---KGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIE 93 (108)
T ss_dssp CCCCCSCCCSCBS-SHHHHHHHHH--HHCSSEEEEETTSCCT---TTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEE
T ss_pred CCCCCCCcccccC-CHHHHHHHHH--hcCCCEEEEECCCCCC---ccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEe
Confidence 57888886 553 2222222222 3679999999976554 45677888766632 2 3689999
Q ss_pred Eeeec
Q 027466 199 EFVNH 203 (223)
Q Consensus 199 eFINH 203 (223)
|||..
T Consensus 94 e~i~g 98 (108)
T 2cqy_A 94 KFIDN 98 (108)
T ss_dssp ECCSS
T ss_pred eccCC
Confidence 99974
No 64
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=96.08 E-value=0.0075 Score=59.10 Aligned_cols=109 Identities=15% Similarity=0.223 Sum_probs=39.4
Q ss_pred HHHHhCCCeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEEeeec
Q 027466 93 EYRQTHPEVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLV 169 (223)
Q Consensus 93 ~y~~~hP~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~Kplv 169 (223)
+..+++ .+.++ -++++++.+.|+..+.+.+++. .+.+|++. .++ +.++..+.. ..+.||+|+||..
T Consensus 93 ~~le~~-Gi~~iGp~~~ai~~~~dK~~~k~~l~~~-------GVPvpp~~~~~~~-s~~e~~~~a--~~igyPvVvKp~~ 161 (681)
T 3n6r_A 93 EALEAE-GVIFVGPPKGAIEAMGDKITSKKIAQEA-------NVSTVPGYMGLIE-DADEAVKIS--NQIGYPVMIKASA 161 (681)
T ss_dssp HHHHTT-TCCCSSSCHHHHHHTTSHHHHHHHHHTT-------TCCCCCC-------------------------------
T ss_pred HHHHHc-CCceECCCHHHHHHhCCHHHHHHHHHHc-------CcCcCCccccCcC-CHHHHHHHH--HhcCCcEEEEECC
Confidence 334443 56666 6789999999999999988753 46777764 333 333333322 3578999999987
Q ss_pred ccCCCCCeeEEEEeccccccCC-------------CCceeEEEeeecCcEEEEEEEecce
Q 027466 170 ADGSAKSHELSLAYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 170 A~Gs~~SH~Maivf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
..| +.-|.++.+++.|.+. ..++++|+||... .=|=|-|++|.
T Consensus 162 ggg---gkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~-rei~V~v~~d~ 217 (681)
T 3n6r_A 162 GGG---GKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP-RHIEIQVLCDS 217 (681)
T ss_dssp --------------------------------------------CCSC-EEEEEEEECCS
T ss_pred CCC---CCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC-cEEEEEEEEeC
Confidence 654 5678899998877432 2489999999853 55667777664
No 65
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=95.36 E-value=0.024 Score=58.85 Aligned_cols=102 Identities=7% Similarity=0.115 Sum_probs=66.2
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEEeeecccCCCCC
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~S 176 (223)
.+.++ -++++++.+.|+..+.+.+++. .+.+|++. .++ +.++..+.. ..+.||+|+||....| +
T Consensus 102 Gi~~iGp~~eai~~~~DK~~~r~ll~~a-------GIPvpp~~~~~v~-s~eea~~~a--~~iGyPvVVKP~~GgG---g 168 (1150)
T 3hbl_A 102 GIKFIGPHLEHLDMFGDKVKARTTAIKA-------DLPVIPGTDGPIK-SYELAKEFA--EEAGFPLMIKATSGGG---G 168 (1150)
T ss_dssp TCEESSSCHHHHHHHHSHHHHHHHHHHT-------TCCBCCBCSSCBC-SSSTTTTTG--GGTCSSEEEECCC-------
T ss_pred CCCeeCCCHHHHHHhCCHHHHHHHHHHc-------CcCCCCccccCCC-CHHHHHHHH--HHcCCCEEEEeCCCCC---C
Confidence 56666 6778999999999999988764 46778877 443 223322222 3478999999987654 5
Q ss_pred eeEEEEeccccccC----C---------CCceeEEEeeecCcEEEEEEEecc
Q 027466 177 HELSLAYDQYSLKK----L---------EPPLVLQEFVNHGMQMAFGYLADI 215 (223)
Q Consensus 177 H~Maivf~~~gL~~----l---------~~P~VlQeFINH~gvlfKVYViG~ 215 (223)
.-|.++.+++.|.+ + ..++++|+||.. ..=|=|-|+||
T Consensus 169 ~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G-~reieV~vl~d 219 (1150)
T 3hbl_A 169 KGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDN-PKHIEVQVIGD 219 (1150)
T ss_dssp ---CEECCSSSCTHHHHSSSSSCC------CBEEECCCSS-CEEEEEEEEEC
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCC-CcEEEEEEEEe
Confidence 67889999888742 1 358999999974 24455666655
No 66
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=95.33 E-value=0.021 Score=59.27 Aligned_cols=103 Identities=13% Similarity=0.196 Sum_probs=36.3
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceE--EEccCCCCchHHHHhcCCccceEEeeecccCCCCC
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL--VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKS 176 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v--~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~S 176 (223)
.+.++ -++++++.+.|+..+.+.+.+. .+.+|++. .++ +.++..+.. ..+.||+|+||....|+
T Consensus 118 Gi~~iGp~~~ai~~~~DK~~~k~~l~~~-------GIPvp~~~~~~v~-s~eea~~~a--~~igyPvVVKp~~g~GG--- 184 (1165)
T 2qf7_A 118 GIIFIGPKADTMRQLGNKVAARNLAISV-------GVPVVPATEPLPD-DMAEVAKMA--AAIGYPVMLKASWGGGG--- 184 (1165)
T ss_dssp TCEESSCCHHHHHHHHSHHHHHHHHHHT-------TCCBC----------------------------------------
T ss_pred CCceECCCHHHHHHHCCHHHHHHHHHHc-------CCCCCCeeCcCCC-CHHHHHHHH--HhcCCCEEEEeCCCCCC---
Confidence 45555 4578999999999998888764 47778887 443 223322222 24789999999987665
Q ss_pred eeEEEEeccccccCC-------------CCceeEEEeeecCcEEEEEEEecce
Q 027466 177 HELSLAYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 177 H~Maivf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
.-|.++.+++.|.+. ..++++||||.. +.=|=|-+++|.
T Consensus 185 ~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~g-g~EisV~vl~D~ 236 (1165)
T 2qf7_A 185 RGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVER-ARHVESQILGDT 236 (1165)
T ss_dssp -----------------------------------CCCSS-EEEEEEEEEECT
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccC-CcEEEEEEEEcC
Confidence 468899998776432 258999999985 455667777663
No 67
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=94.43 E-value=0.03 Score=58.63 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=31.5
Q ss_pred CeEEe-CChhhHHhhcCHHHHHHHHHhccccCCCCcccCCc-eEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCe
Q 027466 100 EVTVL-DPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPR-QLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSH 177 (223)
Q Consensus 100 ~v~VI-DP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~-~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH 177 (223)
.+.++ -++++++.+.|+..+.+.+++. .|.+|+ +..++ +.++..+.. ..+.||+|+||....| +.
T Consensus 128 Gi~~iGps~eai~~~~DK~~ak~ll~~a-------GIPvpp~~~~v~-s~eea~~~a--~~iGyPvVVKP~~GgG---Gk 194 (1236)
T 3va7_A 128 NIVFVGPSGDAIRKLGLKHSAREIAERA-------KVPLVPGSGLIK-DAKEAKEVA--KKLEYPVMVKSTAGGG---GI 194 (1236)
T ss_dssp TCEESSCCHHHHHHHHSTTHHHHHHHHT-------TCCCCC---------------------------------------
T ss_pred CCCeeCCCHHHHHHhcCHHHHHHHHHHc-------CCCCCCeeEecC-CHHHHHHHH--HHcCCCEEEEeCCCCC---CC
Confidence 45554 6678888999998888888764 466666 44443 333333322 3478999999976554 56
Q ss_pred eEEEEeccccccCC-------------CCceeEEEeeecCcEEEEEEEecce
Q 027466 178 ELSLAYDQYSLKKL-------------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 178 ~Maivf~~~gL~~l-------------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
-|.++.+++.|.+. ..++++||||.- +.=|=|.|++|.
T Consensus 195 GV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G-~rEisV~vl~Dg 245 (1236)
T 3va7_A 195 GLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN-ARHVEIQMMGDG 245 (1236)
T ss_dssp --------------------------------------C-CEEEEEEEEEES
T ss_pred CEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC-CeEEEEEEEecC
Confidence 68899998776431 347999999975 455666666653
No 68
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=94.39 E-value=0.035 Score=46.67 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=57.6
Q ss_pred hcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeeccc--CCCCCeeEEE-Eecccccc
Q 027466 113 LHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD--GSAKSHELSL-AYDQYSLK 189 (223)
Q Consensus 113 L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~--Gs~~SH~Mai-vf~~~gL~ 189 (223)
.+|...+.+.+.+ ..|.+|++.++++. ++..+.. ..+.||+++||...+ |..++--..+ +.+++.+.
T Consensus 19 ~l~k~~~k~ll~~-------~GIp~p~~~~~~~~-~ea~~~a--~~lg~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~ 88 (238)
T 1wr2_A 19 AMVEYEAKQVLKA-------YGLPVPEEKLAKTL-DEALEYA--KEIGYPVVLKLMSPQILHKSDAKVVMLNIKNEEELK 88 (238)
T ss_dssp EECHHHHHHHHHT-------TTCCCCCCEEESSH-HHHHHHH--HHHCSSEEEEEECTTCCCHHHHTCEEEEECSHHHHH
T ss_pred CCCHHHHHHHHHH-------cCcCCCCeEEeCCH-HHHHHHH--HHhCCCEEEEEccCCCCcCCccCCEEEeCCCHHHHH
Confidence 4677777777764 35889999988532 2222221 246899999998751 1112334445 67876663
Q ss_pred CC----------------CCceeEEEeeecCcEEEEEEEecce
Q 027466 190 KL----------------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 190 ~l----------------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
+. ..++++|+||.++ .=+=|-+++|.
T Consensus 89 ~a~~~~~~~~~~~~~~~~~~~vlVEe~i~~g-~E~~v~v~~d~ 130 (238)
T 1wr2_A 89 KKWEEIHENAKKYRPDAEILGVLVAPMLKPG-REVIIGVTEDP 130 (238)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEEEEECCCCC-EEEEEEEEEET
T ss_pred HHHHHHHHhhhhhCCCCccceEEEEECCCCC-eEEEEEEEeCC
Confidence 21 1579999999964 44455566665
No 69
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=93.11 E-value=0.25 Score=44.75 Aligned_cols=130 Identities=16% Similarity=0.130 Sum_probs=72.0
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCC---CCCCeeEEE-ec-cCC---hHHHHHHHHHHHhC---------------------
Q 027466 48 KLEGLARNKGILFVAIDQNRPLS---DQGPFDIVL-HK-LTG---KEWRQILEEYRQTH--------------------- 98 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~---~QgpfDvIL-HK-ltd---~~~~~~lq~y~~~h--------------------- 98 (223)
.+...|++.|+.++.+|.+.+-. .....|-.+ -- .+| ... +++..+.+
T Consensus 31 ~l~~aAk~lG~~vi~vd~~~~~p~~~~~~~ad~~~~~d~~~d~~~~~~---l~~l~~~~~vV~pe~~~v~~~gl~~l~~~ 107 (361)
T 2r7k_A 31 HILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEI---QEKLRELNSIVVPHGSFIAYCGLDNVENS 107 (361)
T ss_dssp HHHHHHHHTTCCEEEEECTTSCHHHHHTTCCSEEEECSSGGGGGSHHH---HHHHHHTTEEECCBHHHHHHHCHHHHHHT
T ss_pred HHHHHHHHCCCEEEEEECCCCCCcccccccCceEEECCCcccccHHHH---HHHHHHcCCEEEeCchhhhHHHHHHHHHH
Confidence 36678899999999999985421 122334333 22 334 222 22222221
Q ss_pred CCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCCCCee
Q 027466 99 PEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 99 P~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
-.+.+.-+..+.+.-.||...-+.+++. .+.+|++ ++ +.++ +.+|+|+||.-+. .++-
T Consensus 108 ~g~~v~g~~~a~~~e~~k~~~k~~l~~~-------GIptp~~--~~-~~~e---------~~~PvVVK~~~~a---~GkG 165 (361)
T 2r7k_A 108 FLVPMFGNRRILRWESERSLEGKLLREA-------GLRVPKK--YE-SPED---------IDGTVIVKFPGAR---GGRG 165 (361)
T ss_dssp CCSCBBSCGGGGGTTTCHHHHHHHHHHT-------TCCCCCE--ES-SGGG---------CCSCEEEECSCCC---C---
T ss_pred cCCCcCCCHHHHHHhhhHHHHHHHHHHc-------CcCCCCE--eC-CHHH---------cCCCEEEeeCCCC---CCCC
Confidence 1233333444444455555444444442 4777865 32 2111 2599999998764 4778
Q ss_pred EEEEeccccccC----C--------C--CceeEEEeee
Q 027466 179 LSLAYDQYSLKK----L--------E--PPLVLQEFVN 202 (223)
Q Consensus 179 Maivf~~~gL~~----l--------~--~P~VlQeFIN 202 (223)
..++.+.+.+.+ + . .++|+|||++
T Consensus 166 v~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 166 YFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred EEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 889988766532 1 2 4799999998
No 70
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=87.34 E-value=0.4 Score=44.02 Aligned_cols=79 Identities=19% Similarity=0.121 Sum_probs=50.8
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCccceEEeeecc-cCCCCCeeEEEEeccccccC-----C--------CCceeEEE
Q 027466 134 KVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVA-DGSAKSHELSLAYDQYSLKK-----L--------EPPLVLQE 199 (223)
Q Consensus 134 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA-~Gs~~SH~Maivf~~~gL~~-----l--------~~P~VlQe 199 (223)
.|.+|++.++++ .++..+..++ +.||+++||... .|..++.-+.++.+++.+.+ + -.++++||
T Consensus 16 GIpvp~~~~~~s-~eea~~aa~~--lG~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe 92 (397)
T 3ufx_B 16 GVPVPPGKVAYT-PEEAKRIAEE--FGKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAE 92 (397)
T ss_dssp TCCCCCEEEESS-HHHHHHHHHH--HTSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEE
T ss_pred CCCCCCeEEECC-HHHHHHHHHH--cCCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEE
Confidence 588999998853 2222223333 459999999872 34456778888877765522 1 24799999
Q ss_pred eeecCcEEEEEEEecce
Q 027466 200 FVNHGMQMAFGYLADIH 216 (223)
Q Consensus 200 FINH~gvlfKVYViG~~ 216 (223)
|++++--+| |-++.|.
T Consensus 93 ~v~~g~El~-vgv~~D~ 108 (397)
T 3ufx_B 93 AVDIAKEYY-AGLILDR 108 (397)
T ss_dssp CCCEEEEEE-EEEEEET
T ss_pred eecCCeeEE-EEEEecC
Confidence 999864443 3444444
No 71
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=83.39 E-value=1.4 Score=40.28 Aligned_cols=80 Identities=9% Similarity=0.051 Sum_probs=51.5
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCccc-eEEeeeccc-CCCCCeeEEEEeccccccC---------C-----------
Q 027466 134 KVDVPRQLVIERDASSIPDVVLKAGLTLP-LVAKPLVAD-GSAKSHELSLAYDQYSLKK---------L----------- 191 (223)
Q Consensus 134 ~i~~P~~v~i~~~~~~~~~~l~~agl~fP-~I~KplvA~-Gs~~SH~Maivf~~~gL~~---------l----------- 191 (223)
.+.+|++.++++ .++..+..+ .+.|| +++||.... |..++.-+.++.+++.+.+ +
T Consensus 16 GIpvp~~~~~~s-~eea~~aa~--~lG~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~ 92 (388)
T 2nu8_B 16 GLPAPVGYACTT-PREAEEAAS--KIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQP 92 (388)
T ss_dssp TCCCCCEEEESS-HHHHHHHHH--HHCSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEE
T ss_pred CcCCCCeeEECC-HHHHHHHHH--HhCCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcc
Confidence 588999998853 222222222 36799 999998743 3457788888888765521 1
Q ss_pred CCceeEEEeeecCcEEEEEEEecceE
Q 027466 192 EPPLVLQEFVNHGMQMAFGYLADIHY 217 (223)
Q Consensus 192 ~~P~VlQeFINH~gvlfKVYViG~~~ 217 (223)
..++++|+|++++--+| |-++.|..
T Consensus 93 ~~~vlVEe~v~~~~E~~-v~v~~D~~ 117 (388)
T 2nu8_B 93 VNQILVEAATDIAKELY-LGAVVDRS 117 (388)
T ss_dssp CCCEEEEECCCEEEEEE-EEEEEETT
T ss_pred cceEEEEEccccCCcEE-EEEEEecc
Confidence 13799999999864443 44555543
No 72
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=76.42 E-value=44 Score=32.37 Aligned_cols=167 Identities=14% Similarity=0.161 Sum_probs=93.4
Q ss_pred EEEEEeChhhhhccchhhHHhHHHhcCcEEEEee-CCCCC--CCCC--------CeeEEEeccCChHHH-HHHH------
Q 027466 31 VVGYALTSKKTKSFLQPKLEGLARNKGILFVAID-QNRPL--SDQG--------PFDIVLHKLTGKEWR-QILE------ 92 (223)
Q Consensus 31 ~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD-~~~pl--~~Qg--------pfDvILHKltd~~~~-~~lq------ 92 (223)
+|..+..+.-.+.....-|.+.|++.|++...+| ++ .| .+.| ++|+|. |+.-.+|. ..+.
T Consensus 381 ~v~~a~~~~~Ed~~t~~~L~~~a~eaG~~~~~~~~i~-dl~~~~~G~l~d~dg~~I~~lf-klypwE~m~~~~~~~~~~~ 458 (619)
T 2io8_A 381 FVHIMQDKDIEENYHAQFMEQALHQAGFETRILRGLD-ELGWDAAGQLIDGEGRLVNCVW-KTWAWETAFDQIREVSDRE 458 (619)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEESST-TCEECSSSCEECTTSCBCCEEE-ESSCHHHHHHHHHHC---C
T ss_pred EEEEEecCCccchHHHHHHHHHHHHCCCceEEecchH-hEEECCCCcEECCCCCEeeeEE-ecCCHHHHHHHhhhhcccc
Confidence 4544433332222233346789999999999998 54 33 2222 666654 46666654 2321
Q ss_pred ---------------HHHH--hCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHH
Q 027466 93 ---------------EYRQ--THPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVL 155 (223)
Q Consensus 93 ---------------~y~~--~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~ 155 (223)
++.+ ....+.+|.|+.++- +.|+.. +..|-++...+ .-.-|.+ ++.+ . .+.
T Consensus 459 ~~~~~~~~g~~~~g~~ll~~l~~~~v~iieP~~~~l-lsNKai-lalLw~l~p~h---p~LLpT~--f~~~--~---~l~ 526 (619)
T 2io8_A 459 FAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVI-PGNKAI-LPILWSLFPHH---RYLLDTD--FTVN--D---ELV 526 (619)
T ss_dssp CSSCCCCSCCSSCCCCHHHHHTCTTCEEESCGGGGT-TTSTTH-HHHHHHHSTTC---TTCCCEE--SSCC--H---HHH
T ss_pred cccccccccCccchHHHHHHHHhCCCEEECHHHHHH-hhhHHH-HHHHHHhCCCC---CCCCCee--ecCC--c---ccc
Confidence 2333 356899999998876 777653 33333332111 1112333 2111 1 122
Q ss_pred hcCCccceEEeeecccCCCCCeeEEEEec-cccccC----C-CCceeEEEeeecC-----cEEEEEEEecceEE
Q 027466 156 KAGLTLPLVAKPLVADGSAKSHELSLAYD-QYSLKK----L-EPPLVLQEFVNHG-----MQMAFGYLADIHYI 218 (223)
Q Consensus 156 ~agl~fP~I~KplvA~Gs~~SH~Maivf~-~~gL~~----l-~~P~VlQeFINH~-----gvlfKVYViG~~~~ 218 (223)
.. .+|.||+..-+.+ .|.|+-+ .+.+.+ . +.++|.|+|+.-- -.++=+|++|+++.
T Consensus 527 ~~----~yV~KPi~gReG~---nV~i~~~~~~~~~~~~~~y~~~~~IyQe~~~lp~~d~~~~~iG~f~vgg~~a 593 (619)
T 2io8_A 527 KT----GYAVKPIAGRCGS---NIDLVSHHEEVLDKTSGKFAEQKNIYQQLWCLPKVDGKYIQVCTFTVGGNYG 593 (619)
T ss_dssp HH----CEEEEETTCCTTT---TCEEECTTSCEEEECCCTTTTSCEEEEECCCCCEETTEEEEEEEEEETTEEE
T ss_pred cC----CEEEccCCCCCCC---CEEEEeCCChhHhhccccccCCCeEEEEecCCCCcCCcceEEEEEEECCEEE
Confidence 22 4999999965554 4777654 222221 1 3589999999853 34577888888764
No 73
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=72.77 E-value=2.9 Score=38.26 Aligned_cols=79 Identities=16% Similarity=0.152 Sum_probs=47.9
Q ss_pred cccCCceEEEccCCCCchHHHHhcCCcc-ceEEeeecccCCC-CC-------eeEEEEeccccccC----C---------
Q 027466 134 KVDVPRQLVIERDASSIPDVVLKAGLTL-PLVAKPLVADGSA-KS-------HELSLAYDQYSLKK----L--------- 191 (223)
Q Consensus 134 ~i~~P~~v~i~~~~~~~~~~l~~agl~f-P~I~KplvA~Gs~-~S-------H~Maivf~~~gL~~----l--------- 191 (223)
.+.+|++.++.+ .++..+..+ .+.| |+++||.+.+|.. +. --+.++.+++.+.+ +
T Consensus 16 GIpvp~~~~~~s-~~ea~~~a~--~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q 92 (395)
T 2fp4_B 16 GVKVQRFFVADT-ANEALEAAK--RLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQ 92 (395)
T ss_dssp TCCCCCEEEESS-HHHHHHHHH--HHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTT
T ss_pred CcCCCCeEEECC-HHHHHHHHH--HcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhc
Confidence 588999998853 222222222 3678 8999999777551 11 23777777655421 1
Q ss_pred -------CCceeEEEeeecCcEEEEEEEecce
Q 027466 192 -------EPPLVLQEFVNHGMQMAFGYLADIH 216 (223)
Q Consensus 192 -------~~P~VlQeFINH~gvlfKVYViG~~ 216 (223)
-..+++|+|++++--+| |-++.|.
T Consensus 93 ~g~~g~~~~~vlVEe~v~~~~E~~-v~i~~D~ 123 (395)
T 2fp4_B 93 TPKEGVKVNKVMVAEALDISRETY-LAILMDR 123 (395)
T ss_dssp SCTTCEECCCEEEEECCCCSEEEE-EEEEEET
T ss_pred cCCCCCccceEEEEEccCCceeEE-EEEEEcc
Confidence 12589999999764444 3444444
No 74
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=42.32 E-value=55 Score=26.23 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=35.1
Q ss_pred CCcEEEEEEeChhhhhccc---hhhHHhHHHhcCcEEEEeeCCCCCCCC---------CCeeEEE
Q 027466 27 SKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVL 79 (223)
Q Consensus 27 ~~~~~VGy~l~~kK~~~f~---~~~~~~~~~~~gi~fv~iD~~~pl~~Q---------gpfDvIL 79 (223)
++..+||+.++.-. ..|. ..++...|+++|+.++-.+.+ +.+.| ..+|.||
T Consensus 3 ~~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI 65 (280)
T 3gyb_A 3 LRTQLIAVLIDDYS-NPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAGTDPITSALSMRPDGII 65 (280)
T ss_dssp -CCCEEEEEESCTT-SGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSSSCHHHHHHTTCCSEEE
T ss_pred CccCEEEEEeCCCC-ChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHHHHHHHHHHhCCCCEEE
Confidence 45678999997642 2222 234667888999999999888 54433 5789998
No 75
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=38.56 E-value=17 Score=33.30 Aligned_cols=148 Identities=11% Similarity=0.173 Sum_probs=73.5
Q ss_pred HHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChHHHHHHHHHHH--hCCC-eEEeCChhhHHhhcCHHHHHHHHHh
Q 027466 49 LEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQILEEYRQ--THPE-VTVLDPPYAIQHLHNRQSMLQCVAD 125 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~~~~~lq~y~~--~hP~-v~VIDP~~~i~~L~dR~~~~~~l~~ 125 (223)
+....+++|. +..++-+ -..+|++...-...- |.+ .+|. .-.|.=+.....|.....|.+.+..
T Consensus 20 V~~vL~~~g~-w~ev~~~-----~~~~dl~W~~~~~~p-------~~~l~~~p~~~Q~vNhfPg~~~l~rKd~L~~nl~~ 86 (380)
T 3tig_A 20 VAKILLASGQ-WKRLKRD-----NPKFNLMLGERNRLP-------FGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKT 86 (380)
T ss_dssp HHHHHHHTTS-EEECCTT-----CSCCSEEECCSSSCC-------GGGSSCSTTCCCEESCCTTTHHHHSHHHHHHHHHH
T ss_pred HHHHHHhcCC-eEEeCCC-----CCceeEEEecCCCCC-------HHHhccCCCcceEEeecCCcccccccHHHHHHHHH
Confidence 3455567774 2233332 236788876443211 111 1243 2455556666677777777776654
Q ss_pred ccccCCCCcccCCceEEE-ccC--------------------CCC---chHHH---HhcCCccceEEeeecccCCCCCee
Q 027466 126 MNLSNSYGKVDVPRQLVI-ERD--------------------ASS---IPDVV---LKAGLTLPLVAKPLVADGSAKSHE 178 (223)
Q Consensus 126 l~~~~~~~~i~~P~~v~i-~~~--------------------~~~---~~~~l---~~agl~fP~I~KplvA~Gs~~SH~ 178 (223)
.........+ .|+..++ ..+ .++ +.+.. ++.|-.-+||+||...+.. .-
T Consensus 87 ~~~~~~~~~f-~P~ty~L~P~~~~~p~~~~~~~~~~~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG---~G 162 (380)
T 3tig_A 87 SPELTETCTW-FPESYVIYPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKG---EG 162 (380)
T ss_dssp CHHHHTTCTT-SCCEEECCC------------------------CCHHHHHHHHHHHHTTCCCCEEEEESCC-------C
T ss_pred hhhcccccCc-CCcceeeCccccccccccccccccccccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCC---CC
Confidence 2111111122 3444444 211 012 22222 2357889999999764332 23
Q ss_pred EEEEeccccccCC----CCceeEEEeeec------Cc--EEEEEEEe
Q 027466 179 LSLAYDQYSLKKL----EPPLVLQEFVNH------GM--QMAFGYLA 213 (223)
Q Consensus 179 Maivf~~~gL~~l----~~P~VlQeFINH------~g--vlfKVYVi 213 (223)
..++-+.+.+.+. ..+.|+|+||.. +| .=..+||+
T Consensus 163 I~l~~~~~~i~~~~~~~~~~~VvQkYI~~PlLi~~~grKFDlR~Yvl 209 (380)
T 3tig_A 163 ILISSDATELLDFIDNQGQVHVIQKYLESPLLLEPGHRKFDIRSWVL 209 (380)
T ss_dssp CBCCSCSHHHHHHHHHHTSCEEEEECCSSBCCBTTTTBCEEEEEEEE
T ss_pred EEEeCCHHHHHHHHhccCCcEEEEecccCceeecCCCceeEEEEEEE
Confidence 4444444444322 468999999975 44 23466766
No 76
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=36.62 E-value=81 Score=25.29 Aligned_cols=79 Identities=13% Similarity=0.104 Sum_probs=47.6
Q ss_pred CCcEEEEEEeChhhhhcc---chhhHHhHHHhcCcEEEEeeCCCCCCCC---------CCeeEEEeccCC-hHHHHHHHH
Q 027466 27 SKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTG-KEWRQILEE 93 (223)
Q Consensus 27 ~~~~~VGy~l~~kK~~~f---~~~~~~~~~~~~gi~fv~iD~~~pl~~Q---------gpfDvILHKltd-~~~~~~lq~ 93 (223)
.+..+||+.++.-- ..| ...++...|+++|+.++-.+.+.+.+.| ..+|.||=--.+ ......+++
T Consensus 3 ~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~ 81 (291)
T 3l49_A 3 LEGKTIGITAIGTD-HDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK 81 (291)
T ss_dssp CTTCEEEEEESCCS-SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 35678999998543 222 2345667889999999988876553221 356777743333 233444555
Q ss_pred HHHhCCCeEEeCC
Q 027466 94 YRQTHPEVTVLDP 106 (223)
Q Consensus 94 y~~~hP~v~VIDP 106 (223)
..+..-.++.+|.
T Consensus 82 ~~~~~iPvV~~~~ 94 (291)
T 3l49_A 82 INDAGIPLFTVDT 94 (291)
T ss_dssp HHHTTCCEEEESC
T ss_pred HHHCCCcEEEecC
Confidence 5555555666664
No 77
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=36.17 E-value=59 Score=28.75 Aligned_cols=90 Identities=9% Similarity=0.103 Sum_probs=55.9
Q ss_pred CCCCcEEEEEEeChhh-hhccch---hhHHhHHHhcC--cEEEEeeCCCCCCC---------CCCeeEEEeccCChHHHH
Q 027466 25 QQSKLVVVGYALTSKK-TKSFLQ---PKLEGLARNKG--ILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQ 89 (223)
Q Consensus 25 ~~~~~~~VGy~l~~kK-~~~f~~---~~~~~~~~~~g--i~fv~iD~~~pl~~---------QgpfDvILHKltd~~~~~ 89 (223)
...+.++||...+-.. -++|++ .++...+++.| +++.-++...+-++ +..+|+|+ .+.....+
T Consensus 22 ~~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii--~~g~~~~~ 99 (356)
T 3s99_A 22 MAEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIF--TTSFGYMD 99 (356)
T ss_dssp ----CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEE--ECSGGGHH
T ss_pred ccCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEE--ECCHHHHH
Confidence 3456799999996433 245664 45667888889 98887776433211 13589887 34555667
Q ss_pred HHHHHHHhCCC--eEEeCC---hhhHHhhcCH
Q 027466 90 ILEEYRQTHPE--VTVLDP---PYAIQHLHNR 116 (223)
Q Consensus 90 ~lq~y~~~hP~--v~VIDP---~~~i~~L~dR 116 (223)
.+.+..+++|+ ++++|- .+++..+.-|
T Consensus 100 ~~~~vA~~~Pdv~fv~id~~~~~~Nv~sv~~~ 131 (356)
T 3s99_A 100 PTVKVAKKFPDVKFEHATGYKTADNMSAYNAR 131 (356)
T ss_dssp HHHHHHTTCTTSEEEEESCCCCBTTEEEEEEC
T ss_pred HHHHHHHHCCCCEEEEEeccccCCcEEEEEec
Confidence 78888899998 555664 3455554444
No 78
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=35.66 E-value=75 Score=24.68 Aligned_cols=77 Identities=14% Similarity=0.114 Sum_probs=42.4
Q ss_pred cEEEEEEeChhhhhccchhhHHh----HHHhcCcEEEEeeCCCCCCCCCCeeEEE-----eccCChHHHHHHHHHHH-hC
Q 027466 29 LVVVGYALTSKKTKSFLQPKLEG----LARNKGILFVAIDQNRPLSDQGPFDIVL-----HKLTGKEWRQILEEYRQ-TH 98 (223)
Q Consensus 29 ~~~VGy~l~~kK~~~f~~~~~~~----~~~~~gi~fv~iD~~~pl~~QgpfDvIL-----HKltd~~~~~~lq~y~~-~h 98 (223)
..++|.=.++.-.+.... .+.. -....++.|+.-|+...-...+.||+|+ |-+.+..+.+.+++..+ -.
T Consensus 54 ~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk 132 (219)
T 3jwg_A 54 EQITGVDVSYSVLERAKD-RLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR 132 (219)
T ss_dssp CEEEEEESCHHHHHHHHH-HHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHH-HHHhhccccccCcceEEEeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhC
Confidence 578888877654332211 1100 0011279999999965444457999998 33444455555655544 34
Q ss_pred CC-eEEeCC
Q 027466 99 PE-VTVLDP 106 (223)
Q Consensus 99 P~-v~VIDP 106 (223)
|. +++..|
T Consensus 133 pgG~~i~~~ 141 (219)
T 3jwg_A 133 PQTVIVSTP 141 (219)
T ss_dssp CSEEEEEEE
T ss_pred CCEEEEEcc
Confidence 55 444444
No 79
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=34.71 E-value=95 Score=22.52 Aligned_cols=79 Identities=24% Similarity=0.286 Sum_probs=46.9
Q ss_pred cchhhHHhHHHhcCcE--EEEeeCCCCCCC-CCCeeEEEeccCChHHHHHHHHHHH-hCCCeEEeCChhhHHhhcCHHHH
Q 027466 44 FLQPKLEGLARNKGIL--FVAIDQNRPLSD-QGPFDIVLHKLTGKEWRQILEEYRQ-THPEVTVLDPPYAIQHLHNRQSM 119 (223)
Q Consensus 44 f~~~~~~~~~~~~gi~--fv~iD~~~pl~~-QgpfDvILHKltd~~~~~~lq~y~~-~hP~v~VIDP~~~i~~L~dR~~~ 119 (223)
+...++...++++|++ .-..+.. .+++ ...+|+||-=..=....+++++... .+-++++|+|.... .+|...+
T Consensus 19 ll~~kl~~~~~~~gi~~~i~~~~~~-~~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv~~I~~~~y~--~~d~~~v 95 (109)
T 2l2q_A 19 MLVQRIEKYAKSKNINATIEAIAET-RLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPIEIINTIDYG--TMNGEKV 95 (109)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEECST-THHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCEEECCHHHHH--HTCHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEEecHH-HHHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCEEEEChHHhc--cCCHHHH
Confidence 4445666777888875 3333332 1221 2468999864332222455555443 35678999998774 5788877
Q ss_pred HHHHHh
Q 027466 120 LQCVAD 125 (223)
Q Consensus 120 ~~~l~~ 125 (223)
++.+.+
T Consensus 96 l~~i~~ 101 (109)
T 2l2q_A 96 LQLAIN 101 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 80
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=34.61 E-value=3.3e+02 Score=26.46 Aligned_cols=148 Identities=10% Similarity=0.053 Sum_probs=78.7
Q ss_pred HHhHHHhcCcEEEEee-CCCCCC--C-------C-CCeeEEEeccCChHHHHHH-H------------------HHHH--
Q 027466 49 LEGLARNKGILFVAID-QNRPLS--D-------Q-GPFDIVLHKLTGKEWRQIL-E------------------EYRQ-- 96 (223)
Q Consensus 49 ~~~~~~~~gi~fv~iD-~~~pl~--~-------Q-gpfDvILHKltd~~~~~~l-q------------------~y~~-- 96 (223)
|.+.|++.|++...++ ++ .|. + + .++|++. |+.-.+|.-.- . +|.+
T Consensus 415 L~~~a~eaG~~t~~~~~i~-dL~~~~~G~l~D~~g~~Id~lf-KLyPwE~m~~~~~~~~~~~~~~~~g~p~~g~~~~~~l 492 (652)
T 2vob_A 415 CMQAAEAVGLEGKLCILFD-EFRFDDNGHVVDSDGVRVRNVW-KTWMWESAITDYYAAREERGENWKPSPKDKVRLCDLL 492 (652)
T ss_dssp HHHHHHHTTCEEEEEETTT-TCEECTTSCEECTTSCBCCEEE-ECSCHHHHHHHHHHHHHHHCSSCCCCTTSBCCHHHHH
T ss_pred HHHHHHHCCCcEEEecchh-heEECCCCcEECCCCcEeeEEE-ecCCHHHHHHhhhhcccccccccccCccchhHHHHHH
Confidence 6688999999999987 54 432 2 2 3777765 48777774322 0 2322
Q ss_pred hCC--CeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeecccCCC
Q 027466 97 THP--EVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVADGSA 174 (223)
Q Consensus 97 ~hP--~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~KplvA~Gs~ 174 (223)
... .+++|.|+-+ .|+.=..++..|-++...+. -.-|.+ + +... .+... .+|.||+..-+.+
T Consensus 493 ~~~~~~v~~ieP~wk--~LlsNKaiLalLW~l~p~hp---~LLpt~--f--~~~~---~~~~~----~yV~KPi~gReG~ 556 (652)
T 2vob_A 493 LGDDWEILYFEPMWK--VIPSNKAILPMIYHNHPEHP---AILKAE--Y--ELTD---ELRKH----GYAKKPIVGRVGS 556 (652)
T ss_dssp SSSCTTSEEESCGGG--GTTTSTTHHHHHHHHCTTCT---TBCCEE--S--SCCH---HHHHH----CEEEEECC-----
T ss_pred hcCCCceEEeChhHH--HhhcCHHHHHHHHhcccCCC---CCCchh--h--cCCC---ccccC----CeEeccCCCCCCC
Confidence 245 8999999844 34444566666666533221 122333 1 1111 12222 4999999865554
Q ss_pred CCeeEEEEecccc--ccC-----CCCceeEEEeee-----cCcEEEEEEEecceEE
Q 027466 175 KSHELSLAYDQYS--LKK-----LEPPLVLQEFVN-----HGMQMAFGYLADIHYI 218 (223)
Q Consensus 175 ~SH~Maivf~~~g--L~~-----l~~P~VlQeFIN-----H~gvlfKVYViG~~~~ 218 (223)
+ ..|+ +..+ ..+ -+.|+|.|+|+. -+-.++=+|++|+.+.
T Consensus 557 n---V~I~-~~~~~~~~~~~g~y~~~~~IyQe~~~lp~f~~~~~~iG~~lvg~~~a 608 (652)
T 2vob_A 557 N---VIIT-SGDGVVHAESGGKYGKRNMIYQQLFELKKQDDYYAIIGGWMIGDAFS 608 (652)
T ss_dssp --------------------------CEEEEECCC--CBTTBCCEEEEEEETTEEE
T ss_pred C---EEEE-cCCchhhhhcccccCCCCeEEEecccCCccCCcceEEEEEEECCEEE
Confidence 3 4443 2222 111 135899999987 3467888888888654
No 81
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=34.56 E-value=62 Score=25.95 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=43.8
Q ss_pred CCCCcEEEEEEeChh-hhhccc---hhhHHhHHHhcCcEEEEeeCCCCCCC---------CCCeeEEEeccCChHHHHHH
Q 027466 25 QQSKLVVVGYALTSK-KTKSFL---QPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQIL 91 (223)
Q Consensus 25 ~~~~~~~VGy~l~~k-K~~~f~---~~~~~~~~~~~gi~fv~iD~~~pl~~---------QgpfDvILHKltd~~~~~~l 91 (223)
.+.+..+||+.++.. -...|. ..++...|+++|+.++-.+.+.+.+. +..+|.||==-++.. ...+
T Consensus 15 ~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~ 93 (296)
T 3brq_A 15 SAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-VDEI 93 (296)
T ss_dssp ----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSC-HHHH
T ss_pred hcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-hHHH
Confidence 345678999999762 112222 23566788899999888776544221 246786664322211 1234
Q ss_pred HHHHH-hCCCeEEeCC
Q 027466 92 EEYRQ-THPEVTVLDP 106 (223)
Q Consensus 92 q~y~~-~hP~v~VIDP 106 (223)
++..+ ..-.++++|.
T Consensus 94 ~~l~~~~~iPvV~~~~ 109 (296)
T 3brq_A 94 DDIIDAHSQPIMVLNR 109 (296)
T ss_dssp HHHHHTCSSCEEEESC
T ss_pred HHHHhcCCCCEEEEcc
Confidence 44444 4556777774
No 82
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=33.58 E-value=94 Score=23.75 Aligned_cols=69 Identities=14% Similarity=0.109 Sum_probs=40.6
Q ss_pred cEEEEEEeChhhhhccchhhHHhHHHhc---CcEEEEeeCCCCCCCCCCeeEEE-----eccCChHHHHHHHHHH---Hh
Q 027466 29 LVVVGYALTSKKTKSFLQPKLEGLARNK---GILFVAIDQNRPLSDQGPFDIVL-----HKLTGKEWRQILEEYR---QT 97 (223)
Q Consensus 29 ~~~VGy~l~~kK~~~f~~~~~~~~~~~~---gi~fv~iD~~~pl~~QgpfDvIL-----HKltd~~~~~~lq~y~---~~ 97 (223)
..++|.=+++.- +..|++. ++.|+..|+... ...++||+|+ |-+.+..+...+++.. +.
T Consensus 69 ~~v~~~D~s~~~---------~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 138 (218)
T 3ou2_A 69 DRVTALDGSAEM---------IAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAP 138 (218)
T ss_dssp SEEEEEESCHHH---------HHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred CeEEEEeCCHHH---------HHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCC
Confidence 356777666543 3333333 589999999866 5678999998 4444433444444433 32
Q ss_pred CCCeEEeCCh
Q 027466 98 HPEVTVLDPP 107 (223)
Q Consensus 98 hP~v~VIDP~ 107 (223)
.--+++.|+-
T Consensus 139 gG~l~~~~~~ 148 (218)
T 3ou2_A 139 GGVVEFVDVT 148 (218)
T ss_dssp EEEEEEEEEC
T ss_pred CeEEEEEeCC
Confidence 2235566553
No 83
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=33.22 E-value=1.5e+02 Score=24.22 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=43.8
Q ss_pred CcEEEEEEeChhhhhcc--chhhHHhHHHhcCcEEEEeeCCCCCCCC---------CCeeEEEeccCCh-HHHHHHHHHH
Q 027466 28 KLVVVGYALTSKKTKSF--LQPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGK-EWRQILEEYR 95 (223)
Q Consensus 28 ~~~~VGy~l~~kK~~~f--~~~~~~~~~~~~gi~fv~iD~~~pl~~Q---------gpfDvILHKltd~-~~~~~lq~y~ 95 (223)
+..+||+.++.-.-.-| ...++...|+++|+.++-.+-+.+.+.| ..+|.||=--.+. .....+++..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~ 81 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAG 81 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHH
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHH
Confidence 45789999886431111 2235667889999998887754332211 2356555433332 2334455555
Q ss_pred HhCCCeEEeCC
Q 027466 96 QTHPEVTVLDP 106 (223)
Q Consensus 96 ~~hP~v~VIDP 106 (223)
+..-.++.+|-
T Consensus 82 ~~giPvV~~~~ 92 (330)
T 3uug_A 82 EQGIKVIAYDR 92 (330)
T ss_dssp HTTCEEEEESS
T ss_pred HCCCCEEEECC
Confidence 55545666653
No 84
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=33.07 E-value=27 Score=27.65 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=19.3
Q ss_pred CcEEEEeeCCCCCCCCCCeeEEEe
Q 027466 57 GILFVAIDQNRPLSDQGPFDIVLH 80 (223)
Q Consensus 57 gi~fv~iD~~~pl~~QgpfDvILH 80 (223)
++.++..|...++...++||+|+=
T Consensus 117 ~v~~~~~d~~~~~~~~~~fD~v~~ 140 (231)
T 1vbf_A 117 NIKLILGDGTLGYEEEKPYDRVVV 140 (231)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEE
T ss_pred CeEEEECCcccccccCCCccEEEE
Confidence 688999998776666789999874
No 85
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=32.73 E-value=1.9e+02 Score=23.88 Aligned_cols=98 Identities=6% Similarity=0.082 Sum_probs=51.1
Q ss_pred HHHHHHhhHhhhccCCccc--CCCCcEEEEEEeChhhhhcc---chhhHHhHHHhcCcEEEEe--eCC--CCCCC-----
Q 027466 6 EEIEEQTREEELLSFPQTQ--QQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAI--DQN--RPLSD----- 71 (223)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~--~~~~~~~VGy~l~~kK~~~f---~~~~~~~~~~~~gi~fv~i--D~~--~pl~~----- 71 (223)
+.|.+-++|. +--|+.. .+.+..+||+.++..-...| ...++...|+++|+.+.-. +.+ .+.+.
T Consensus 20 ~rV~~aa~el--gY~pn~~Ar~~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i 97 (342)
T 1jx6_A 20 NLTNALSEAV--RAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSL 97 (342)
T ss_dssp HHHHHHHHHH--HSCCCCCSSCCSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHh--cCCCCccccccCCceEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHH
Confidence 3344444443 3334433 35667899999975111222 2235667888899876544 333 22111
Q ss_pred ----CCCeeEEEeccCChH-HHHHHHHHHHh-CCCeEEeCC
Q 027466 72 ----QGPFDIVLHKLTGKE-WRQILEEYRQT-HPEVTVLDP 106 (223)
Q Consensus 72 ----QgpfDvILHKltd~~-~~~~lq~y~~~-hP~v~VIDP 106 (223)
+..+|.||- ..+.. ....+++..+. .|-|+++|-
T Consensus 98 ~~l~~~~vdgiIi-~~~~~~~~~~~~~~~~~~ip~V~~~~~ 137 (342)
T 1jx6_A 98 MEALKSKSDYLIF-TLDTTRHRKFVEHVLDSTNTKLILQNI 137 (342)
T ss_dssp HHHHHTTCSEEEE-CCSSSTTHHHHHHHHHHCSCEEEEETC
T ss_pred HHHHhcCCCEEEE-eCChHhHHHHHHHHHHcCCCEEEEecC
Confidence 146888877 55432 23445555554 454555463
No 86
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=29.79 E-value=60 Score=25.49 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=24.4
Q ss_pred hHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEec
Q 027466 48 KLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHK 81 (223)
Q Consensus 48 ~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHK 81 (223)
..++.|+++++.++..|+...-...+.||+|+--
T Consensus 76 ~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 76 RMAEIARKRGVFVLKGTAENLPLKDESFDFALMV 109 (219)
T ss_dssp HHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred HHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEc
Confidence 4556777779999999986432235689999844
No 87
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=29.76 E-value=1.2e+02 Score=24.37 Aligned_cols=41 Identities=10% Similarity=0.091 Sum_probs=27.0
Q ss_pred CCCcEEEEEEeChhhhhccc---hhhHHhHHHhcCcEEEEeeCCC
Q 027466 26 QSKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNR 67 (223)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f~---~~~~~~~~~~~gi~fv~iD~~~ 67 (223)
+++..+||+.++.-. ..|. ..++...|+++|+.++-.+.+.
T Consensus 2 s~~~~~Igvi~~~~~-~~~~~~~~~g~~~~a~~~g~~~~~~~~~~ 45 (304)
T 3o1i_D 2 SGSDEKICAIYPHLK-DSYWLSVNYGMVSEAEKQGVNLRVLEAGG 45 (304)
T ss_dssp ---CCEEEEEESCSC-SHHHHHHHHHHHHHHHHHTCEEEEEECSS
T ss_pred CCCCcEEEEEeCCCC-CcHHHHHHHHHHHHHHHcCCeEEEEcCCC
Confidence 456789999998642 1221 2356678899999998888764
No 88
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=29.67 E-value=70 Score=27.69 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=33.0
Q ss_pred CcEEEEeeCCCC---CCCCCCeeEEE-----eccCChHHHHHHHHHHHh-CC--CeEEeCCh
Q 027466 57 GILFVAIDQNRP---LSDQGPFDIVL-----HKLTGKEWRQILEEYRQT-HP--EVTVLDPP 107 (223)
Q Consensus 57 gi~fv~iD~~~p---l~~QgpfDvIL-----HKltd~~~~~~lq~y~~~-hP--~v~VIDP~ 107 (223)
++.|+.-|+..+ +. +.||+|+ |-++|....+.|++..+. .| -++++|+.
T Consensus 230 ~v~~~~~d~~~~~~~~p--~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 230 RIHGHGANLLDRDVPFP--TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp GEEEEECCCCSSSCCCC--CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred ceEEEEccccccCCCCC--CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 599999999763 54 6799985 445566666666665543 34 37777764
No 89
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*
Probab=28.76 E-value=34 Score=27.39 Aligned_cols=23 Identities=13% Similarity=0.507 Sum_probs=19.4
Q ss_pred CcEEEEeeCCCCCCCCCCeeEEE
Q 027466 57 GILFVAIDQNRPLSDQGPFDIVL 79 (223)
Q Consensus 57 gi~fv~iD~~~pl~~QgpfDvIL 79 (223)
++.++.-|...++.+.++||+|+
T Consensus 141 ~v~~~~~d~~~~~~~~~~fD~Ii 163 (235)
T 1jg1_A 141 NVHVILGDGSKGFPPKAPYDVII 163 (235)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEE
T ss_pred CcEEEECCcccCCCCCCCccEEE
Confidence 48889999877887778899998
No 90
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=27.63 E-value=89 Score=25.07 Aligned_cols=81 Identities=14% Similarity=0.164 Sum_probs=47.6
Q ss_pred CCCCcEEEEEEeChhhhhccc---hhhHHhHHHhcCcEEEEeeCCCCCCCC---------CCeeEEEeccCCh-HHHHHH
Q 027466 25 QQSKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGK-EWRQIL 91 (223)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f~---~~~~~~~~~~~gi~fv~iD~~~pl~~Q---------gpfDvILHKltd~-~~~~~l 91 (223)
.+++..+||+.++.-. ..|. ..++...|+++|+.++-.+.+.+.+.| ..+|.||==-.+. .....+
T Consensus 4 ~~~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~ 82 (293)
T 3l6u_A 4 TSPKRNIVGFTIVNDK-HEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAI 82 (293)
T ss_dssp -----CEEEEEESCSC-SHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHH
T ss_pred CCCCCcEEEEEEecCC-cHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHH
Confidence 3456789999998643 2222 235667889999999988876543322 4567666433332 233556
Q ss_pred HHHHHhCCCeEEeCC
Q 027466 92 EEYRQTHPEVTVLDP 106 (223)
Q Consensus 92 q~y~~~hP~v~VIDP 106 (223)
++..+..-.++++|.
T Consensus 83 ~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 83 EEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHTTCCEEEESS
T ss_pred HHHHHcCCCEEEecC
Confidence 666666667787774
No 91
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=26.41 E-value=1.3e+02 Score=23.91 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=46.6
Q ss_pred CCCcEEEEEEeChhhhhcc---chhhHHhHHHhcCcEEEEeeCCCCCCC---------CCCeeEEEeccCChHHHHHHHH
Q 027466 26 QSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQILEE 93 (223)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f---~~~~~~~~~~~~gi~fv~iD~~~pl~~---------QgpfDvILHKltd~~~~~~lq~ 93 (223)
+++..+||+.++.-. ..| ...++...|+++|+.++-.+.+.+.+. +..+|.||==-.+. ...++.
T Consensus 4 ~~~s~~Igvi~~~~~-~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~ 80 (276)
T 3jy6_A 4 TQSSKLIAVIVANID-DYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQE 80 (276)
T ss_dssp -CCCCEEEEEESCTT-SHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHH
T ss_pred CCCCcEEEEEeCCCC-chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHH
Confidence 456789999998642 111 123566788999999998887654221 24566666433333 344555
Q ss_pred HHHhCCCeEEeCC
Q 027466 94 YRQTHPEVTVLDP 106 (223)
Q Consensus 94 y~~~hP~v~VIDP 106 (223)
..+..-+++++|.
T Consensus 81 l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 81 ILHQQMPVVSVDR 93 (276)
T ss_dssp HHTTSSCEEEESC
T ss_pred HHHCCCCEEEEec
Confidence 5555556666764
No 92
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=26.29 E-value=2.1e+02 Score=22.90 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=41.9
Q ss_pred CCCCcEEEEEEeChhhhhcc---chhhHHhHHHhcCcEEEEeeCCCCCCC---------CCCeeEEEeccCChHHHHHHH
Q 027466 25 QQSKLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQILE 92 (223)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f---~~~~~~~~~~~~gi~fv~iD~~~pl~~---------QgpfDvILHKltd~~~~~~lq 92 (223)
.+.+..+||+.++.-. ..| ...++...|+++|+.++-.+.+.+.+. +..+|.||==-++..-...++
T Consensus 16 ~~~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~ 94 (293)
T 2iks_A 16 RAGRTRSIGLVIPDLE-NTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQ 94 (293)
T ss_dssp --CCCCEEEEEESCSC-SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHH
T ss_pred hcCCCcEEEEEeCCCc-CcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHH
Confidence 3456789999997522 112 123456688899999887776543221 145676553222211111233
Q ss_pred HHHHhCCCeEEeCC
Q 027466 93 EYRQTHPEVTVLDP 106 (223)
Q Consensus 93 ~y~~~hP~v~VIDP 106 (223)
+..+..-+++++|.
T Consensus 95 ~~~~~~iPvV~~~~ 108 (293)
T 2iks_A 95 RWANDPFPIVALDR 108 (293)
T ss_dssp TTTTSSSCEEEEES
T ss_pred HHHhCCCCEEEECC
Confidence 33333445677764
No 93
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=25.02 E-value=46 Score=25.90 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=29.9
Q ss_pred cEEEEEEeChhhhhccchhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEec
Q 027466 29 LVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHK 81 (223)
Q Consensus 29 ~~~VGy~l~~kK~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHK 81 (223)
..++|.-.++...+... ..+... .-.++.++.-|...++.+.++||+|+--
T Consensus 103 ~~v~~vD~~~~~~~~a~-~~~~~~-~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 153 (215)
T 2yxe_A 103 GLVVSIERIPELAEKAE-RTLRKL-GYDNVIVIVGDGTLGYEPLAPYDRIYTT 153 (215)
T ss_dssp SEEEEEESCHHHHHHHH-HHHHHH-TCTTEEEEESCGGGCCGGGCCEEEEEES
T ss_pred CEEEEEeCCHHHHHHHH-HHHHHc-CCCCeEEEECCcccCCCCCCCeeEEEEC
Confidence 45667666665443321 111110 1125888888887776667889999854
No 94
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=24.92 E-value=52 Score=32.69 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=37.3
Q ss_pred hhccchhhHHhHHHhcCcEEEEeeCCCCCCCCCCeeEEEeccCChH-------HHHHHHHHHHhCCCeEE
Q 027466 41 TKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKE-------WRQILEEYRQTHPEVTV 103 (223)
Q Consensus 41 ~~~f~~~~~~~~~~~~gi~fv~iD~~~pl~~QgpfDvILHKltd~~-------~~~~lq~y~~~hP~v~V 103 (223)
.+.+....+.++.++.||+++++|+++.+.+-+--..==.+ .++. +-+.+++..++||++++
T Consensus 456 vr~~i~~~l~~ll~~~GIDy~K~D~nr~i~~~~~~~~~~~~-q~~~~~~y~~g~y~ll~~l~~~~P~v~i 524 (745)
T 3mi6_A 456 VVDYLFKLMSQMIESANLDYIKWDMNRYATEMFSSRLTSDQ-QLELPHRYILGVYQLYARLTQAYPNVLF 524 (745)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEECCCSCCCSCCCSSSCGGG-GGGHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCCcccCCCcCcccc-ccHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence 33444444556777889999999999988643210000000 0111 23457888899999887
No 95
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=24.27 E-value=57 Score=25.42 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=41.6
Q ss_pred cEEEEEEeChhhhhccchhhHHh----HHHhcCcEEEEeeCCCCCCCCCCeeEEE-----eccCChHHHHHHHHHHH-hC
Q 027466 29 LVVVGYALTSKKTKSFLQPKLEG----LARNKGILFVAIDQNRPLSDQGPFDIVL-----HKLTGKEWRQILEEYRQ-TH 98 (223)
Q Consensus 29 ~~~VGy~l~~kK~~~f~~~~~~~----~~~~~gi~fv~iD~~~pl~~QgpfDvIL-----HKltd~~~~~~lq~y~~-~h 98 (223)
..++|.=.++.-.+.... .+.. -....++.|+.-|+...-...+.||+|+ |-+++..+.+.+++..+ -.
T Consensus 54 ~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk 132 (217)
T 3jwh_A 54 EQITGVDVSYRSLEIAQE-RLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQ 132 (217)
T ss_dssp SEEEEEESCHHHHHHHHH-HHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTC
T ss_pred CEEEEEECCHHHHHHHHH-HHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcC
Confidence 477888777654332211 1100 0011279999999865444457999997 33344444555555443 34
Q ss_pred CC-eEEeCCh
Q 027466 99 PE-VTVLDPP 107 (223)
Q Consensus 99 P~-v~VIDP~ 107 (223)
|+ ++++-|.
T Consensus 133 pgG~li~~~~ 142 (217)
T 3jwh_A 133 PKIVIVTTPN 142 (217)
T ss_dssp CSEEEEEEEB
T ss_pred CCEEEEEccC
Confidence 54 4444443
No 96
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=23.99 E-value=49 Score=25.63 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=19.4
Q ss_pred CcEEEEeeCCCCCCCCCCeeEEEec
Q 027466 57 GILFVAIDQNRPLSDQGPFDIVLHK 81 (223)
Q Consensus 57 gi~fv~iD~~~pl~~QgpfDvILHK 81 (223)
++.++.-|....+.+.++||+|+=-
T Consensus 126 ~v~~~~~d~~~~~~~~~~~D~i~~~ 150 (210)
T 3lbf_A 126 NVSTRHGDGWQGWQARAPFDAIIVT 150 (210)
T ss_dssp SEEEEESCGGGCCGGGCCEEEEEES
T ss_pred ceEEEECCcccCCccCCCccEEEEc
Confidence 4788888887766667889998853
No 97
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7
Probab=23.48 E-value=50 Score=26.18 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=32.3
Q ss_pred EEEEEEeChhhhhccchhhHHhH----HHhcCcEEEEeeCCCCCCCCCCeeEEEe
Q 027466 30 VVVGYALTSKKTKSFLQPKLEGL----ARNKGILFVAIDQNRPLSDQGPFDIVLH 80 (223)
Q Consensus 30 ~~VGy~l~~kK~~~f~~~~~~~~----~~~~gi~fv~iD~~~pl~~QgpfDvILH 80 (223)
.++|.-.++...+... ..+... ....++.++.-|...++.+.++||+|+-
T Consensus 116 ~v~~vD~~~~~~~~a~-~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~ 169 (227)
T 1r18_A 116 RIVGIEHQAELVRRSK-ANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAPYNAIHV 169 (227)
T ss_dssp EEEEEESCHHHHHHHH-HHHHHHHHHHHHHTSEEEEESCGGGCCGGGCSEEEEEE
T ss_pred EEEEEEcCHHHHHHHH-HHHHhcCccccCCCceEEEECCcccCCCcCCCccEEEE
Confidence 6777777776544322 122111 0134799999999888777789999953
No 98
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=23.00 E-value=2.2e+02 Score=23.60 Aligned_cols=78 Identities=6% Similarity=-0.083 Sum_probs=44.5
Q ss_pred CCCCcEEEEEEeChhhhhccc---hhhHHhHHHhcCcEEEEeeCCCCCCC---------CCCeeEEEeccCChHHHHHHH
Q 027466 25 QQSKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHKLTGKEWRQILE 92 (223)
Q Consensus 25 ~~~~~~~VGy~l~~kK~~~f~---~~~~~~~~~~~gi~fv~iD~~~pl~~---------QgpfDvILHKltd~~~~~~lq 92 (223)
.+.+..+||+.++.-. ..|. ..++...|+++|+.++-.+.+.+.+. +..+|-||=--++... ..++
T Consensus 64 ~~~~~~~Ig~i~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~ 141 (344)
T 3kjx_A 64 ASNRVNLVAVIIPSLS-NMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARA 141 (344)
T ss_dssp TTSCCSEEEEEESCSS-SSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHH
T ss_pred hcCCCCEEEEEeCCCC-cHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHH
Confidence 3456789999997642 2222 23466688889999887776544221 2456766643222211 3344
Q ss_pred HHHHhCCCeEEe
Q 027466 93 EYRQTHPEVTVL 104 (223)
Q Consensus 93 ~y~~~hP~v~VI 104 (223)
...+..-+++++
T Consensus 142 ~l~~~~iPvV~i 153 (344)
T 3kjx_A 142 MLDAAGIPVVEI 153 (344)
T ss_dssp HHHHCSSCEEEE
T ss_pred HHHhCCCCEEEE
Confidence 444555566666
No 99
>2plc_A PI-PLC, phosphatidylinositol-specific phospholipase C; hydrolase, phospholipid degradation, virulence factor of human pathogen; 2.00A {Listeria monocytogenes} SCOP: c.1.18.2 PDB: 1aod_A*
Probab=22.88 E-value=83 Score=26.79 Aligned_cols=43 Identities=14% Similarity=0.315 Sum_probs=31.6
Q ss_pred cCcEEEEeeCCCCCCCCCCeeEEEeccCC-----hHHHHHHHHHHHhCC-CeEEeC
Q 027466 56 KGILFVAIDQNRPLSDQGPFDIVLHKLTG-----KEWRQILEEYRQTHP-EVTVLD 105 (223)
Q Consensus 56 ~gi~fv~iD~~~pl~~QgpfDvILHKltd-----~~~~~~lq~y~~~hP-~v~VID 105 (223)
.|+.+.-|+.. +.+ .+.|-... ..+.+.+.+|.++|| ++++|+
T Consensus 56 ~GvR~ldlr~~------~~~-~~~H~~~~~~~~~~~~L~~i~~fL~~~P~EvVil~ 104 (274)
T 2plc_A 56 AGIRYIDIRAK------DNL-NIYHGPIFLNASLSGVLETITQFLKKNPKETIIMR 104 (274)
T ss_dssp TTCCEEEEEEC------TTS-EEEETTEEEEEEHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred hCCcEEEEEEC------CcE-EEEEcCCCCCCCHHHHHHHHHHHHHhCCCceEEEE
Confidence 59999999997 222 45565541 367888999999999 677775
No 100
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=22.25 E-value=68 Score=24.95 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=28.1
Q ss_pred EEEEEEeChhhhhccchhhHHhHHHhc---CcEEEEeeCCCCCCCCCCeeEEEe
Q 027466 30 VVVGYALTSKKTKSFLQPKLEGLARNK---GILFVAIDQNRPLSDQGPFDIVLH 80 (223)
Q Consensus 30 ~~VGy~l~~kK~~~f~~~~~~~~~~~~---gi~fv~iD~~~pl~~QgpfDvILH 80 (223)
-++|.=+++. .++.|+++ ++.|+..|+... ...+.||+|+=
T Consensus 66 ~v~gvD~s~~---------~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~ 109 (250)
T 2p7i_A 66 DITCVEASEE---------AISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVL 109 (250)
T ss_dssp CEEEEESCHH---------HHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEE
T ss_pred cEEEEeCCHH---------HHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEE
Confidence 4667666543 44444444 899999998766 45678999984
No 101
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=22.11 E-value=1.6e+02 Score=24.77 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=33.2
Q ss_pred cCcEEEEeeCCCCCCCCCCeeEEE-----eccCChHHHHHHHHHHHh-CC--CeEEeCCh
Q 027466 56 KGILFVAIDQNRPLSDQGPFDIVL-----HKLTGKEWRQILEEYRQT-HP--EVTVLDPP 107 (223)
Q Consensus 56 ~gi~fv~iD~~~pl~~QgpfDvIL-----HKltd~~~~~~lq~y~~~-hP--~v~VIDP~ 107 (223)
..++|+..|+..|+.. +||+|+ |-+.|....+.+++..+. .| -++++|+.
T Consensus 219 ~~v~~~~~d~~~~~p~--~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 219 GRAQVVVGSFFDPLPA--GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp TTEEEEECCTTSCCCC--SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cCeEEecCCCCCCCCC--CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 3599999999866554 799986 455665555556555432 34 47777764
No 102
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=22.03 E-value=2e+02 Score=23.74 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=45.4
Q ss_pred CCCcEEEEEEeChhhhhccc---hhhHHhHHHhc-CcEEEEeeCCCCCCC---------CCCeeEEEeccCChH-HHHHH
Q 027466 26 QSKLVVVGYALTSKKTKSFL---QPKLEGLARNK-GILFVAIDQNRPLSD---------QGPFDIVLHKLTGKE-WRQIL 91 (223)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f~---~~~~~~~~~~~-gi~fv~iD~~~pl~~---------QgpfDvILHKltd~~-~~~~l 91 (223)
+.+..+||+.++. ...|. ..++...|+++ |+.++-.+.+.+.+. +..+|.||==-++.. ....+
T Consensus 3 ~~~~~~Igvi~~~--~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 3 DTPHFRIGVAQCS--DDSWRHKMNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp ---CCEEEEEESC--CSHHHHHHHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CCCCeEEEEEecC--CCHHHHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 4456799999876 33332 23455677888 999888776543221 145776664333332 23445
Q ss_pred HHHHHhCCCeEEeCC
Q 027466 92 EEYRQTHPEVTVLDP 106 (223)
Q Consensus 92 q~y~~~hP~v~VIDP 106 (223)
++..+..-+++++|.
T Consensus 81 ~~~~~~~iPvV~~~~ 95 (325)
T 2x7x_A 81 EEAYQKGIPVILVDR 95 (325)
T ss_dssp HHHHHTTCCEEEESS
T ss_pred HHHHHCCCeEEEeCC
Confidence 555555556777774
No 103
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=21.80 E-value=1.7e+02 Score=25.32 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=33.7
Q ss_pred cCcEEEEeeCCCCCCCCCCeeEEE-----eccCChHHHHHHHHHHHh-CCC--eEEeCCh
Q 027466 56 KGILFVAIDQNRPLSDQGPFDIVL-----HKLTGKEWRQILEEYRQT-HPE--VTVLDPP 107 (223)
Q Consensus 56 ~gi~fv~iD~~~pl~~QgpfDvIL-----HKltd~~~~~~lq~y~~~-hP~--v~VIDP~ 107 (223)
.++.|+..|+..|+.. .||+|+ |-+.|....+.|++..+. .|+ ++++|+.
T Consensus 252 ~~v~~~~~d~~~~~p~--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 309 (369)
T 3gwz_A 252 DRCEILPGDFFETIPD--GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNL 309 (369)
T ss_dssp TTEEEEECCTTTCCCS--SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEB
T ss_pred CceEEeccCCCCCCCC--CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 3699999999866655 799975 455555555667766554 343 6676653
No 104
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.68 E-value=1.8e+02 Score=23.18 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=44.9
Q ss_pred CcEEEEEEeChhhhhccc---hhhHHhHHHhcCcEEEEeeCCCCCCC---------CCCeeEEEeccCCh----HHHHHH
Q 027466 28 KLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRPLSD---------QGPFDIVLHKLTGK----EWRQIL 91 (223)
Q Consensus 28 ~~~~VGy~l~~kK~~~f~---~~~~~~~~~~~gi~fv~iD~~~pl~~---------QgpfDvILHKltd~----~~~~~l 91 (223)
+..+||+.++.-. ..|. ..++...|+++|+.++-.+.+.+.+. +..+|.||==-++. ...+.+
T Consensus 14 ~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 14 SNKTIGVLTTYIS-DYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp -CCEEEEEESCSS-STTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred cCceEEEEeCCCC-chHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 3489999998643 1121 23566788899999998887654332 24677766433321 122344
Q ss_pred HHHHHhCCCeEEeCC
Q 027466 92 EEYRQTHPEVTVLDP 106 (223)
Q Consensus 92 q~y~~~hP~v~VIDP 106 (223)
++..+..-.++++|.
T Consensus 93 ~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 93 LNLEKNGIPFAMINA 107 (298)
T ss_dssp HHHHHTTCCEEEESS
T ss_pred HHHHhcCCCEEEEec
Confidence 444455555666653
No 105
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=21.20 E-value=1.3e+02 Score=24.31 Aligned_cols=78 Identities=6% Similarity=0.006 Sum_probs=46.3
Q ss_pred CcEEEEEEeChhhhhcc---chhhHHhHHHhcCcEEEEeeCC--CCCCC---------CCCeeEEEeccCC-hHHHHHHH
Q 027466 28 KLVVVGYALTSKKTKSF---LQPKLEGLARNKGILFVAIDQN--RPLSD---------QGPFDIVLHKLTG-KEWRQILE 92 (223)
Q Consensus 28 ~~~~VGy~l~~kK~~~f---~~~~~~~~~~~~gi~fv~iD~~--~pl~~---------QgpfDvILHKltd-~~~~~~lq 92 (223)
.+++||+.++... ..| ...++...|+++|+.++-.+.+ .+.+. +..+|.||==-.+ ..+...++
T Consensus 2 ~~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 2 VRDKYYLITHGSQ-DPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp -CCEEEEECSCCC-SHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred ceEEEEEEecCCC-CchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 3578999887652 222 2335667889999999888865 12111 1356766632222 23345566
Q ss_pred HHHHhCCCeEEeCC
Q 027466 93 EYRQTHPEVTVLDP 106 (223)
Q Consensus 93 ~y~~~hP~v~VIDP 106 (223)
+..+..=.++.+|.
T Consensus 81 ~~~~~giPvV~~~~ 94 (297)
T 3rot_A 81 RANKLNIPVIAVDT 94 (297)
T ss_dssp HHHHHTCCEEEESC
T ss_pred HHHHCCCCEEEEcC
Confidence 66666667777774
No 106
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=21.17 E-value=2.2e+02 Score=22.71 Aligned_cols=79 Identities=14% Similarity=0.173 Sum_probs=44.0
Q ss_pred CCCcEEEEEEeChhhhhccc---hhhHHhHHHhcCcEEEEeeCCCCCCCC---------CCeeEEEeccCChHHHHHHHH
Q 027466 26 QSKLVVVGYALTSKKTKSFL---QPKLEGLARNKGILFVAIDQNRPLSDQ---------GPFDIVLHKLTGKEWRQILEE 93 (223)
Q Consensus 26 ~~~~~~VGy~l~~kK~~~f~---~~~~~~~~~~~gi~fv~iD~~~pl~~Q---------gpfDvILHKltd~~~~~~lq~ 93 (223)
.++..+||+.++.-. ..|. ..++...|+++|+.++-.+.+.+.+.| ..+|.||==-.+. ....+++
T Consensus 5 ~~~~~~Igvv~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 5 SKRSNVVGLIVSDIE-NVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp --CCCEEEEEESCTT-SHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred cCCCcEEEEEECCCc-chHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 456789999997643 1121 235667889999999988876543221 4566665222221 1223344
Q ss_pred HHHhCCCeEEeCC
Q 027466 94 YRQTHPEVTVLDP 106 (223)
Q Consensus 94 y~~~hP~v~VIDP 106 (223)
..+..-.++++|.
T Consensus 83 ~~~~~iPvV~~~~ 95 (291)
T 3egc_A 83 ELPKTFPIVAVNR 95 (291)
T ss_dssp SSCTTSCEEEESS
T ss_pred hhccCCCEEEEec
Confidence 4444556666664
No 107
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=20.96 E-value=2.1e+02 Score=19.56 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=38.0
Q ss_pred HHHHHHHhCCCeEEeCChhhHHhhcCHHHHHHHHHhccccCCCCcccCCceEEEccCCCCchHHHHhcCCccceEEeeec
Q 027466 90 ILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLV 169 (223)
Q Consensus 90 ~lq~y~~~hP~v~VIDP~~~i~~L~dR~~~~~~l~~l~~~~~~~~i~~P~~v~i~~~~~~~~~~l~~agl~fP~I~Kplv 169 (223)
.++...+..|+++++|--- +=.+-..+++.+.+.. ....|..+++.....+......++|. .-++.||.-
T Consensus 42 a~~~l~~~~~dlii~d~~l---~~~~g~~~~~~l~~~~------~~~~~~ii~~~~~~~~~~~~~~~~g~-~~~l~kP~~ 111 (132)
T 3lte_A 42 AGIKLSTFEPAIMTLDLSM---PKLDGLDVIRSLRQNK------VANQPKILVVSGLDKAKLQQAVTEGA-DDYLEKPFD 111 (132)
T ss_dssp HHHHHHHTCCSEEEEESCB---TTBCHHHHHHHHHTTT------CSSCCEEEEECCSCSHHHHHHHHHTC-CEEECSSCC
T ss_pred HHHHHHhcCCCEEEEecCC---CCCCHHHHHHHHHhcC------ccCCCeEEEEeCCChHHHHHHHHhCh-HHHhhCCCC
Confidence 3444456789999999631 1144556666655421 12346666665333333334445563 567888853
No 108
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=20.70 E-value=2.6e+02 Score=20.56 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=48.3
Q ss_pred ccchhhHHhHHHhcCcEEEE--eeCCCCCCCC-CCeeEEEeccCChHH---HHHHHHHHHh-CCCeEEeCChhhHHhhcC
Q 027466 43 SFLQPKLEGLARNKGILFVA--IDQNRPLSDQ-GPFDIVLHKLTGKEW---RQILEEYRQT-HPEVTVLDPPYAIQHLHN 115 (223)
Q Consensus 43 ~f~~~~~~~~~~~~gi~fv~--iD~~~pl~~Q-gpfDvILHKltd~~~---~~~lq~y~~~-hP~v~VIDP~~~i~~L~d 115 (223)
++.-.++...|+++|+++-- ...+. +.+. ..+|+||= +.+. .+.+++..+. +=.|.+|||-+-..-.+|
T Consensus 20 sllv~km~~~a~~~gi~v~i~a~~~~~-~~~~~~~~DvvLL---gPQV~y~~~~ik~~~~~~~ipV~vI~~~~Yg~~~~~ 95 (108)
T 3nbm_A 20 AQLANAINEGANLTEVRVIANSGAYGA-HYDIMGVYDLIIL---APQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKS 95 (108)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTS-CTTTGGGCSEEEE---CGGGGGGHHHHHHHHTTTTCEEEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCceEEEEcchHH-HHhhccCCCEEEE---ChHHHHHHHHHHHHhhhcCCcEEEeCHHHhhhhhCC
Confidence 44445667788889987433 33332 3333 46899973 4433 3445555544 346899999877665788
Q ss_pred HHHHHHHHH
Q 027466 116 RQSMLQCVA 124 (223)
Q Consensus 116 R~~~~~~l~ 124 (223)
=...++.+.
T Consensus 96 g~~vl~~~~ 104 (108)
T 3nbm_A 96 PSKALQFVL 104 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887777653
Done!