RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027466
(223 letters)
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1,
inositol 1,3,4-5/6 phosphate, inositol phosphate,
inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB:
2qb5_A* 2odt_X
Length = 346
Score = 188 bits (479), Expect = 5e-59
Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 14/194 (7%)
Query: 24 QQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLT 83
Q K VGY L+ KK K L R +G+ V ++ +RP+ +QGP D+++HKLT
Sbjct: 13 QTFLKGKRVGYWLSEKKIKKLNFQAFAELCRKRGMEVVQLNLSRPIEEQGPLDVIIHKLT 72
Query: 84 ------------GKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNS 131
E +EY HPE VLDP AI+ L +R + + +
Sbjct: 73 DVILEADQNDSQSLELVHRFQEYIDAHPETIVLDPLPAIRTLLDRSKSYELIRKIEAYME 132
Query: 132 YGKVDVPRQLVIER-DASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKK 190
++ P + + ++ K GLT P + K VA G+ SHE+++ ++Q L
Sbjct: 133 DDRICSPPFMELTSLCGDDTMRLLEKNGLTFPFICKTRVAHGT-NSHEMAIVFNQEGLNA 191
Query: 191 LEPPLVLQEFVNHG 204
++PP V+Q F+NH
Sbjct: 192 IQPPCVVQNFINHN 205
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase,
ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba
histolytica} PDB: 1z2o_X* 1z2p_X*
Length = 324
Score = 187 bits (475), Expect = 8e-59
Identities = 28/183 (15%), Positives = 68/183 (37%), Gaps = 9/183 (4%)
Query: 23 TQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKL 82
+ + V + L K K+ + + + L D+ P I+ +
Sbjct: 5 SMTTKQTVSLFIWLPESKQKTLFISTKNHTQFELNNIIFDVTLSTELPDKEPNAIITKRT 64
Query: 83 TGK-EWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQL 141
+ + +Y + HP+V L+ + +R+ + + + +P
Sbjct: 65 HPVGKMADEMRKYEKDHPKVLFLESSAIHDMMSSREEINALLIK-------NNIPIPNSF 117
Query: 142 VIERDASSIPDVVLKAGLTLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFV 201
++ + ++ L LP + KP A G+ +H++ + +Q + + P + Q ++
Sbjct: 118 SVKSKE-EVIQLLQSKQLILPFIVKPENAQGTFNAHQMKIVLEQEGIDDIHFPCLCQHYI 176
Query: 202 NHG 204
NH
Sbjct: 177 NHN 179
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 2e-05
Identities = 41/301 (13%), Positives = 83/301 (27%), Gaps = 97/301 (32%)
Query: 4 MKEEIEEQTREEELLSFPQTQQQSKL-----VVVGYALTSKKTKSFLQPKLEGLARNKGI 58
+ I+ + R+ +++ +Q+ +L V Y ++ + L+ L L K +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 59 LF----------VAID--QNRPLSDQGPFDIVLHKLT-GK--EWRQILEE----YRQTHP 99
L VA+D + + + F I L +LE Q P
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 100 EVTVL-----DPPYAIQHLHNRQSMLQC-------------VADMNLSNSYGKVDVP-RQ 140
T + I + L V + N++ ++ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---NLSCKI 268
Query: 141 LVIERDASSIPDVV------------LKAGLT------------------LPLVAK---P 167
L+ R + D + LT LP P
Sbjct: 269 LLTTRFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 168 LVAD--GSAKSHELSLA--YDQYSLKKLEPPLVLQEFVNH----GMQMAFGYLADIHYII 219
+ L+ + + KL +++ +N + F L+ +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTT--IIESSLNVLEPAEYRKMFDRLS-----V 380
Query: 220 F 220
F
Sbjct: 381 F 381
Score = 33.7 bits (76), Expect = 0.050
Identities = 38/255 (14%), Positives = 68/255 (26%), Gaps = 96/255 (37%)
Query: 12 TREEELLSF--PQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPL 69
TR +++ F T L LT + KS L L+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD----------CRPQDLPRE 321
Query: 70 SDQG-PFDIVL-------HKLTGKEWRQI----LEEYRQTHPEVTVLDPPYAIQHLHNRQ 117
P + + T W+ + L ++ + VL+P + +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNVLEPAE-YRKM---- 374
Query: 118 SMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKA-----------GLTLPLVAK 166
+ +L + ++ IP ++L + L
Sbjct: 375 --------------F------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 167 PLVADGSAKS----HELSLAY---------------DQYSLKK------LEPPLVLQEFV 201
LV +S + L D Y++ K L PP + Q F
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 202 NHGMQMAFGYLADIH 216
+H G+ H
Sbjct: 475 SH-----IGH----H 480
Score = 29.1 bits (64), Expect = 1.5
Identities = 13/107 (12%), Positives = 33/107 (30%), Gaps = 11/107 (10%)
Query: 114 HNRQSMLQCVADMNLSNSYGKV--DVPRQLVIERDASSIPDVVLKAGLTLPLVAKPLVAD 171
H+ M + Y + V D + D + +++K +
Sbjct: 2 HHHHHMDFETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQD------MPKSILSKEEIDH 53
Query: 172 GSAKSHELSLAYDQYSLKKLEPPLVLQEFVNHGMQMAFGYLAD-IHY 217
+S + + ++Q+FV +++ + +L I
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.012
Identities = 36/247 (14%), Positives = 68/247 (27%), Gaps = 91/247 (36%)
Query: 21 PQTQQQSKLVVVGY----ALTSKKTKSFLQPKLEGLARNKGILFVAIDQNRPLSDQGPFD 76
T ++K ++ Y + + L VAI QG D
Sbjct: 113 DTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----FGGQGNTD 167
Query: 77 IVLHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVD 136
+E R + + Y V L ++ + L +++ D + G ++
Sbjct: 168 DYF-----EELRDLYQTYH---VLVGDL-IKFSAETL---SELIRTTLDAEKVFTQG-LN 214
Query: 137 VPRQLVIERDASSIPDV--VLKAGLTLPL------------------------------- 163
+ L + S+ PD +L ++ PL
Sbjct: 215 ILEWL---ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 164 -VAKPLVA--------------DGSAK-----------SHELSLAYDQYSLKKLEPPLVL 197
++ LV K +E AY SL PP +L
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE---AYPNTSL----PPSIL 324
Query: 198 QEFVNHG 204
++ + +
Sbjct: 325 EDSLENN 331
Score = 33.9 bits (77), Expect = 0.043
Identities = 42/254 (16%), Positives = 71/254 (27%), Gaps = 108/254 (42%)
Query: 67 RPLS-DQGPFDIVLHKLTGKEWR--QILEEYRQTHPEVT----VLDPPYAIQHLHNRQSM 119
RPL+ G + VL T + Q+ E++ + PE T D P L +
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK--F 64
Query: 120 LQCVADMNLSNSYGKVDVPRQLVI---ERD----------ASSIPD----------VVLK 156
L V+ + + G+ D L + E A+ + ++K
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 157 AGLT-LPLVAKPL-----------VADGSAKSH--------------ELSLAYDQYSLKK 190
+T + +P V +G+A+ EL Y Y
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY---- 180
Query: 191 LEPPLV----------LQEFVN----------HGMQ-MAF----------GYLADI---- 215
LV L E + G+ + + YL I
Sbjct: 181 --HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 216 ---------HYIIF 220
HY++
Sbjct: 239 PLIGVIQLAHYVVT 252
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 30.2 bits (69), Expect = 0.55
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 85 KEWRQILEEYRQTHP-----EVTVLDPPYAIQHLH 114
WR L +Q P + P YAI+ L
Sbjct: 353 GVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLD 387
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 29.5 bits (67), Expect = 0.97
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 21/117 (17%)
Query: 4 MKEEIEEQTREEELLSFPQTQQQSKLVVVGYALTSKKTKSFLQPKLEGLARNKGILFVAI 63
MK +++ +E+ L + S++ V + + K K+ + R+ G + +
Sbjct: 93 MKMGLKDTPTQEDWLV-SVLPEGSRVGVDPLIIPTDYWK-----KMAKVLRSAGHHLIPV 146
Query: 64 DQN--------RPLSDQGPFDIVLHKLTGKEW-------RQILEEYRQTHPEVTVLD 105
+N RP P + TG W R + E VT LD
Sbjct: 147 KENLVDKIWTDRPERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALD 203
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 29.4 bits (66), Expect = 0.99
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 101 VTVLDPPY-AIQHLHNRQSMLQCVADMNLSNSYGKVDVPRQLVIERDASSIPDVVLKAGL 159
VTV+ PY A + ++ +M + + R +S + + +
Sbjct: 99 VTVIVSPYAACELCFDKYTMYEYCLRQG-------IAHAR---TYATMASFEEALAAGEV 148
Query: 160 TLPLVAKPLVADGSAKSHELSLAYDQYSLKKLEPPLVLQEFV 201
LP+ KP S + + + L L++QE +
Sbjct: 149 QLPVFVKPRNGSASIEVRRVETVEEVEQLFSKNTDLIVQELL 190
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.0
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 11/26 (42%)
Query: 184 DQYSLKKLE-----------PPLVLQ 198
++ +LKKL+ P L ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE;
2.70A {Escherichia coli}
Length = 616
Score = 28.3 bits (64), Expect = 2.2
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 85 KEWRQILEEYRQTHP-----EVTVLDPPYAIQHLH 114
KEW ++ ++T + + P + ++
Sbjct: 369 KEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMN 403
>3quf_A Extracellular solute-binding protein, family 1; structural
genomics, PSI-biology, midwest center for structu
genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum
subsp}
Length = 414
Score = 28.2 bits (63), Expect = 2.4
Identities = 4/35 (11%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 70 SDQGPFDIVL-HKLTGKEWRQILEEYRQTHPEVTV 103
+ G I + ++++ + + +P++T+
Sbjct: 25 AGGGKTKISFYSYFKDNQIGEVVKGFEKKNPDITL 59
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 28.0 bits (63), Expect = 2.8
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 7/37 (18%)
Query: 85 KEWRQILEEYRQTHP-------EVTVLDPPYAIQHLH 114
EW + ++++ +P + + P I+ L
Sbjct: 435 SEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLS 471
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic
binding protein, galactose, GBP, sugar binding protein;
HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Length = 400
Score = 27.1 bits (60), Expect = 5.5
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 78 VLHKLTGKE---WRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQ 121
+ G E ++ Y+Q +P V V++ N +++L+
Sbjct: 5 IFSWWAGDEGPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLK 51
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A
{Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10
c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A*
1tkc_A*
Length = 680
Score = 27.1 bits (61), Expect = 6.4
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 85 KEWRQILEEYRQTHPE 100
+W ++ EY++ PE
Sbjct: 310 NKWNKLFSEYQKKFPE 325
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase,
structural genomics, center for structural genomics of
infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A
{Bacillus anthracis} PDB: 3hyl_A*
Length = 690
Score = 26.7 bits (60), Expect = 7.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 85 KEWRQILEEYRQTHPE 100
EW +L EY Q +PE
Sbjct: 334 AEWNTMLGEYAQAYPE 349
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate,
plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP:
c.36.1.6 c.36.1.10 c.48.1.1
Length = 675
Score = 26.7 bits (60), Expect = 8.0
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 85 KEWRQILEEYRQTHPE 100
+W EY + + +
Sbjct: 320 ADWNAKFAEYEKKYAD 335
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium
tuberculosis}
Length = 700
Score = 26.7 bits (60), Expect = 8.1
Identities = 3/16 (18%), Positives = 8/16 (50%)
Query: 85 KEWRQILEEYRQTHPE 100
+ W+ + + + PE
Sbjct: 329 ERWQLEFDAWARREPE 344
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown
function (DUF404), structural genomics; 2.35A
{Methylobacillus flagellatus}
Length = 474
Score = 26.5 bits (58), Expect = 8.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 45 LQPKLEGLARNKGILFVAIDQNRPLSDQGPFDIVLHKLTGKEWRQI 90
+ + E L R GI F ++ PFD+V L+ EW ++
Sbjct: 42 KRQEAELLFRRVGITFNVYGEDAGAERLIPFDVVPRILSASEWARL 87
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine
diphosphate binding domain, transferase; HET: TPP; 2.22A
{Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10
c.48.1.1
Length = 673
Score = 26.7 bits (60), Expect = 8.4
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 85 KEWRQILEEYRQTHPE 100
K W ++L +Y P
Sbjct: 309 KAWEELLAKYTAAFPA 324
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 26.4 bits (59), Expect = 8.6
Identities = 3/31 (9%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 85 KEWRQILEEYRQTHPEVT-VLDPPYAIQHLH 114
+ R + E+ + I ++
Sbjct: 362 EPLRARIAEFLADPETYEDGMRVHQVIDSMN 392
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate,
benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas
fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A*
3iaf_A* 3d7k_A*
Length = 563
Score = 26.3 bits (59), Expect = 9.6
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 8/38 (21%)
Query: 85 KEWRQILEEYRQTHP--------EVTVLDPPYAIQHLH 114
+W + + Q L P +A Q +
Sbjct: 343 GDWCAKVTDLAQERYASIAAKSSSEHALHPFHASQVIA 380
>2e6k_A Transketolase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 2.09A
{Thermus thermophilus}
Length = 651
Score = 26.3 bits (59), Expect = 9.9
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 85 KEWRQILEEYRQTHPE 100
+ W + LE Y + +P+
Sbjct: 307 EAWEKALEAYARAYPD 322
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.384
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,395,307
Number of extensions: 195323
Number of successful extensions: 541
Number of sequences better than 10.0: 1
Number of HSP's gapped: 530
Number of HSP's successfully gapped: 38
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)