RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 027466
         (223 letters)



>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module
           {Leishmania mexicana mexicana [TaxId: 44270]}
          Length = 336

 Score = 27.1 bits (59), Expect = 1.8
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 85  KEWRQILEEYRQTHPE 100
           K W ++L +Y    P 
Sbjct: 307 KAWEELLAKYTAAFPA 322


>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 335

 Score = 26.6 bits (58), Expect = 2.4
 Identities = 5/16 (31%), Positives = 10/16 (62%)

Query: 85  KEWRQILEEYRQTHPE 100
            +W ++  EY++  PE
Sbjct: 308 NKWNKLFSEYQKKFPE 323


>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize
           (Zea mays) [TaxId: 4577]}
          Length = 338

 Score = 26.7 bits (58), Expect = 2.6
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 85  KEWRQILEEYRQTHPE 100
            +W     EY + + +
Sbjct: 311 ADWNAKFAEYEKKYAD 326


>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
           {Escherichia coli [TaxId: 562]}
          Length = 331

 Score = 25.9 bits (56), Expect = 3.8
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 85  KEWRQILEEYRQTHPE 100
             W +    Y + +P+
Sbjct: 304 SAWNEKFAAYAKAYPQ 319


>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus
           [TaxId: 49283]}
          Length = 362

 Score = 25.8 bits (55), Expect = 4.2
 Identities = 3/17 (17%), Positives = 10/17 (58%)

Query: 87  WRQILEEYRQTHPEVTV 103
              +L+++++  P V +
Sbjct: 18  QAAVLDQWQRQEPGVKL 34


>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 551

 Score = 25.7 bits (56), Expect = 5.4
 Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 79  LHKLTGKEWRQILEEYRQTHPEVTVLDPPYAIQHLHNRQSMLQCVADMNLSNSYGKVDVP 138
           L+ +   E    LE  ++ +              + + + +   + D    +S GK    
Sbjct: 420 LNLMLAGEGHSRLERLKKRY----------ISYMVSDWRDLTANLMDSVFIDSSGKKSKD 469

Query: 139 RQLVIER 145
           ++ + E+
Sbjct: 470 KEQIKEK 476


>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding
           protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 60

 Score = 23.6 bits (51), Expect = 7.2
 Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)

Query: 81  KLTGKEW--RQILEEYRQTHPEVTVLDPPY 108
           +L G++    + L E+ + HP  TV  P Y
Sbjct: 17  RLVGEDAPKNKDLVEWLKLHPTYTVDMPSY 46


>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel
           6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 137

 Score = 24.5 bits (52), Expect = 8.9
 Identities = 4/26 (15%), Positives = 12/26 (46%)

Query: 76  DIVLHKLTGKEWRQILEEYRQTHPEV 101
           ++    L   E + +  ++R++ P  
Sbjct: 111 EVEAFALIADELKFVASQFRRSGPSS 136


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0405    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 802,444
Number of extensions: 34965
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 11
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)