BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027467
         (223 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
           Pyrococcus Horikoshii
 pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
           Pyrococcus Horikoshii
 pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
           Pyrococcus Horikoshii
 pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
           Pyrococcus Horikoshii
          Length = 262

 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 25/212 (11%)

Query: 1   MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNP 60
           + ELA+ELG+ +     E++ N  YNS  ++   G  +G YRK H+     Y+EK +F P
Sbjct: 72  LXELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGY-IGKYRKIHL----FYREKVFFEP 126

Query: 61  GDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDH 120
           GD GFKVF   FAK+GV IC+D +FPE+AR + L+GAEI+ +P  +             +
Sbjct: 127 GDLGFKVFDIGFAKVGVXICFDWFFPESARTLALKGAEIIAHPANL----------VXPY 176

Query: 121 WRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEE 180
             R     A  N V  + ++R+G+E          + F G S IA P  E+++ A + EE
Sbjct: 177 APRAXPIRALENRVYTITADRVGEE--------RGLKFIGKSLIASPKAEVLSIASETEE 228

Query: 181 AVLVAQFDLDKLKSKR--SSWGVFRDRRPELY 210
            + V + DL+  ++KR      +F+DRR E Y
Sbjct: 229 EIGVVEIDLNLARNKRLNDXNDIFKDRREEYY 260


>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
 pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
 pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
 pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
 pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
 pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
 pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
 pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
          Length = 262

 Score =  116 bits (291), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 72/212 (33%), Positives = 115/212 (54%), Gaps = 25/212 (11%)

Query: 1   MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNP 60
           + ++A++ GV +     E+  +  YNS  ++   G  +G YRK H+     Y+EKF+F P
Sbjct: 72  LMDVARDTGVYIVAGTAEKDGDVLYNSAVVVGPRGF-IGKYRKIHL----FYREKFFFEP 126

Query: 61  GDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDH 120
           GD GF+VF   F K+GV I +D +FPE+AR + L+GA+++ +P  +             +
Sbjct: 127 GDLGFRVFDLGFMKVGVMIXFDWFFPESARTLALKGADVIAHPANL----------VMPY 176

Query: 121 WRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEE 180
             R M   A  N V  V ++R+G+E          + F G S IA P  E+++ A + EE
Sbjct: 177 APRAMPIRALENKVYTVTADRVGEE--------RGLKFIGKSLIASPKAEVLSMASETEE 228

Query: 181 AVLVAQFDLDKLKSKRSS--WGVFRDRRPELY 210
            V VA+ DL  +++KR +    +F+DRR E Y
Sbjct: 229 EVGVAEIDLSLVRNKRINDLNDIFKDRREEYY 260


>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
           Amidohydrolase With A Novel Catalytic Framework Common
           To Amidohydrolases
 pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
           Amidohydrolase With A Novel Catalytic Framework Common
           To Amidohydrolases
          Length = 303

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 109/231 (47%), Gaps = 26/231 (11%)

Query: 3   ELAKELGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ----- 53
           E A ELG+   + +     E      +N+  ++D  G  +G YRK H+P    Y+     
Sbjct: 82  EKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPF 141

Query: 54  ---EKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILF----YPTAI 106
              EK YF PGD GF V+    AK+G+ IC D+ +PEA R M L+GAEI+      PT  
Sbjct: 142 QHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAEIICGGYNTPTHN 201

Query: 107 GSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAG 166
              PQ D L S  H    MQ  +  N     A+ ++G E              G+S I  
Sbjct: 202 PPVPQHDHLTSFHHLLS-MQAGSYQNGAWSAAAGKVGME--------ENCMLLGHSCIVA 252

Query: 167 PTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD-RRPELYKVLLTL 216
           PTGEIVA     E+ V+ A  DLD+ +  R     F+  R+P+ Y ++  L
Sbjct: 253 PTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL 303


>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
           N-Carbamoyl-D- Amino-Acid Amidohydrolase
 pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
           N-Carbamoyl-D- Amino-Acid Amidohydrolase
 pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
           N-Carbamoyl-D- Amino-Acid Amidohydrolase
 pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
           N-Carbamoyl-D- Amino-Acid Amidohydrolase
          Length = 304

 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 107/229 (46%), Gaps = 26/229 (11%)

Query: 3   ELAKELGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ----- 53
           E A ELG+   + +     E      +N+  ++D  G  +G YRK H+P    Y+     
Sbjct: 83  ETAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPF 142

Query: 54  ---EKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILF----YPTAI 106
              EK YF PGD GF V+    AK+G+ IC D+ +PE  R M L+GAEI+      PT  
Sbjct: 143 QHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEIICGGYNTPTHN 202

Query: 107 GSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAG 166
              PQ D L S  H    MQ  +  N     A+ ++G E              G+S I  
Sbjct: 203 PPVPQHDHLTSFHHLLS-MQAGSYQNGAWSAAAGKVGME--------EGCMLLGHSCIVA 253

Query: 167 PTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFR-DRRPELYKVLL 214
           PTGEIVA     E+ V+ A  DLD+ +  R     F+  R+P+ Y ++ 
Sbjct: 254 PTGEIVALTTTLEDEVITAALDLDRCRELREHIFNFKAHRQPQHYGLIC 302


>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
           Amidohydrolase
 pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
           Amidohydrolase
 pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
           Amidohydrolase
 pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
           Amidohydrolase
          Length = 304

 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 107/228 (46%), Gaps = 26/228 (11%)

Query: 3   ELAKELGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ----- 53
           E A ELG+   + +     E      +N+  ++D  G  +G YRK H+P    Y+     
Sbjct: 83  ETAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPF 142

Query: 54  ---EKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILF----YPTAI 106
              EK YF PGD GF V+    AK+G+ IC D+ +PE  R M L+GAEI+      PT  
Sbjct: 143 QHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEIICGGYNTPTHN 202

Query: 107 GSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAG 166
              PQ D L S  H    MQ  +  N     A+ ++G E              G+S I  
Sbjct: 203 PPVPQHDHLTSFHHLLS-MQAGSYQNGAWSAAAGKVGME--------EGCMLLGHSCIVA 253

Query: 167 PTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFR-DRRPELYKVL 213
           PTGEIVA     E+ V+ A  DLD+ +  R     F+  R+P+ Y ++
Sbjct: 254 PTGEIVALTTTLEDEVITAALDLDRCRELREHIFNFKAHRQPQHYGLI 301


>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
           N-Carbamoyl-D-Amino Acid Amidohydrolase
 pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
           N-Carbamoyl-D-Amino Acid Amidohydrolase
 pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
           N-Carbamoyl-D-Amino Acid Amidohydrolase
 pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
           N-Carbamoyl-D-Amino Acid Amidohydrolase
          Length = 304

 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 107/228 (46%), Gaps = 26/228 (11%)

Query: 3   ELAKELGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ----- 53
           E A ELG+   + +     E      +N+  ++D  G  +G YRK H+P    Y+     
Sbjct: 83  ETAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPF 142

Query: 54  ---EKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILF----YPTAI 106
              EK YF PGD GF V+    AK+G+ IC D+ +PE  R M L+GAEI+      PT  
Sbjct: 143 QHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEIICGGYNTPTHN 202

Query: 107 GSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAG 166
              PQ D L S  H    MQ  +  N     A+ ++G E              G+S I  
Sbjct: 203 PPVPQHDHLTSFHHLLS-MQCGSYQNGAWSAAAGKVGME--------EGCMLLGHSCIVA 253

Query: 167 PTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFR-DRRPELYKVL 213
           PTGEIVA     E+ V+ A  DLD+ +  R     F+  R+P+ Y ++
Sbjct: 254 PTGEIVALTTTLEDEVITAALDLDRCRELREHIFNFKAHRQPQHYGLI 301


>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
 pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
           Drosophila Melanogaster
          Length = 405

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 103/221 (46%), Gaps = 17/221 (7%)

Query: 1   MQELAKELGVVMPVSFFE---EANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFY 57
           + ELAK   +V+  S  E   E     +N+  +I   G  LG +RK+HIP    + E  Y
Sbjct: 152 LAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTY 211

Query: 58  FNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDS 117
           +  G+TG  VF+T+F K+ V IC+ +  P+      L GAEI+F P+A        G  S
Sbjct: 212 YMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSAT------IGRLS 265

Query: 118 RDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHG--------KSQITFYGNSFIAGPTG 169
              W    +  A AN    V  NR+G E    E+         K    FYG+S++A P G
Sbjct: 266 EPLWSIEARNAAIANSYFTVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDG 325

Query: 170 EIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELY 210
               +    ++ +LV + DL+  +  +  WG    +R  LY
Sbjct: 326 SRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRMTQRVPLY 366


>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
           Amino Acid Amidohydrolase
 pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
           Amino Acid Amidohydrolase
 pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
           Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
           Methionine
 pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
           Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
           Methionine
 pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
           Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
           Valine
 pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
           Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
           Valine
 pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
           Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
           Phenylalanine
 pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
           Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
           Phenylalanine
          Length = 303

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 107/231 (46%), Gaps = 26/231 (11%)

Query: 3   ELAKELGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ----- 53
           E A ELG+   + +     E      +N+  ++D  G  +G YRK H+P    Y+     
Sbjct: 82  EKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPF 141

Query: 54  ---EKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILF----YPTAI 106
              EK YF PGD GF V+    AK+G+ I  D+ +PEA R M L+GAEI+      PT  
Sbjct: 142 QHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHN 201

Query: 107 GSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAG 166
              PQ D L S  H    MQ  +  N     A+ + G E              G+S I  
Sbjct: 202 PPVPQHDHLTSFHHLLS-MQAGSYQNGAWSAAAGKAGME--------ENCMLLGHSCIVA 252

Query: 167 PTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD-RRPELYKVLLTL 216
           PTGEIVA     E+ V+ A  DLD+ +  R     F+  R+P+ Y ++  L
Sbjct: 253 PTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL 303


>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
 pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
          Length = 276

 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 21/218 (9%)

Query: 1   MQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDGPG---YQE 54
           + E+AKE  + ++  S  EE     YN+ ++   DGS L  +RK H+   D PG   +QE
Sbjct: 69  LSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQE 128

Query: 55  KFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDG 114
               +PGD+ F  F T + K+G+ IC+D  F E A+    +G ++L YP A       + 
Sbjct: 129 SKTLSPGDS-FSTFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAF------NL 181

Query: 115 LDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAA 174
                HW  + +  A  N V  VA+    ++       K+    +G+S +  P G+++  
Sbjct: 182 TTGPAHWELLQRARAVDNQV-YVATASPARD------DKASYVAWGHSTVVDPWGQVLTK 234

Query: 175 ADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKV 212
           A   EE +L +  DL KL   R    + + +R +LY V
Sbjct: 235 A-GTEETILYSDIDLKKLAEIRQQIPILKQKRADLYTV 271


>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
           Member Of Branch 10 Of The Nitrilase Superfamily
 pdb|1F89|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
           Member Of Branch 10 Of The Nitrilase Superfamily
          Length = 291

 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 20/191 (10%)

Query: 25  YNSIAIIDADGSDLGLYRKSH-----IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAI 79
           YN+  I + DG  +  +RK H     IP+G  + E    +PG+    +  TK+ K GV I
Sbjct: 110 YNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKSTTI-DTKYGKFGVGI 168

Query: 80  CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 139
           C+D  FPE A     +GA  + YP+A  +      +    HW  + +  A  N V ++  
Sbjct: 169 CYDMRFPELAMLSARKGAFAMIYPSAFNT------VTGPLHWHLLARSRAVDNQVYVMLC 222

Query: 140 NRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSW 199
           +   + +  + H       YG+S +  P G+IVA A + EE ++ A+ D + ++S R + 
Sbjct: 223 SP-ARNLQSSYHA------YGHSIVVDPRGKIVAEAGEGEE-IIYAELDPEVIESFRQAV 274

Query: 200 GVFRDRRPELY 210
            + + RR ++Y
Sbjct: 275 PLTKQRRFDVY 285


>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
 pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
          Length = 440

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 88/193 (45%), Gaps = 19/193 (9%)

Query: 25  YNSIAIIDADGSDLGLYRKSH-----IPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAI 79
           +N+  IID+DG     Y K H     IP      E  +   G        T   ++G++I
Sbjct: 109 WNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSI 168

Query: 80  CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 139
           C+D  FPE +     +GA++L +P+A      + GL    HW  +++  A  N   +VA+
Sbjct: 169 CYDVRFPELSLWNRKRGAQLLSFPSAFT---LNTGL---AHWETLLRARAIENQCYVVAA 222

Query: 140 NRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSW 199
            + G       + K Q   YG+S +  P G +VA   ++ +    A+ DL  + + R   
Sbjct: 223 AQTG-----AHNPKRQ--SYGHSMVVDPWGAVVAQCSERVDMCF-AEIDLSYVDTLREMQ 274

Query: 200 GVFRDRRPELYKV 212
            VF  RR +LY +
Sbjct: 275 PVFSHRRSDLYTL 287


>pdb|3P8K|A Chain A, Crystal Structure Of A Putative Carbon-Nitrogen Family
           Hydrolase From Staphylococcus Aureus
 pdb|3P8K|B Chain B, Crystal Structure Of A Putative Carbon-Nitrogen Family
           Hydrolase From Staphylococcus Aureus
          Length = 281

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 19/192 (9%)

Query: 21  NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQ-TKFAKIGVAI 79
           NN  +N+   ++  G  +  Y K H+   P  +E  +   G+   + FQ +    +   I
Sbjct: 108 NNQIFNTAFSVNKSGQLINEYDKVHLV--PXLREHEFLTAGEYVAEPFQLSDGTYVTQLI 165

Query: 80  CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 139
           C+D  FPE  R     GA+I FY   +   P         HW  +++  A  N   ++ +
Sbjct: 166 CYDLRFPELLRYPARSGAKIAFY---VAQWPX----SRLQHWHSLLKARAIENNXFVIGT 218

Query: 140 NRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSW 199
           N  G +      G ++  + G+S +  P G++V   ++  + +L    +L++++ +R + 
Sbjct: 219 NSTGFD------GNTE--YAGHSIVINPNGDLVGELNESAD-ILTVDLNLNEVEQQRENI 269

Query: 200 GVFRDRRPELYK 211
            VF+  + +LYK
Sbjct: 270 PVFKSIKLDLYK 281


>pdb|3HKX|A Chain A, Crystal Structure Analysis Of An Amidase From
           Nesterenkonia Sp
          Length = 283

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 21/183 (11%)

Query: 30  IIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAA 89
           + D  G  L  Y+K  +    G +EK  F PG+    V      ++ + +C+D  FPE  
Sbjct: 118 LADEHGEVLASYQKVQLY---GPEEKAAFVPGEQPPPVLSWGGRQLSLLVCYDVEFPEMV 174

Query: 90  RAMVLQGAEILFYPTAI-GSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIE 148
           RA   +GA+++  PTA+ G E    G+        ++   A  N + L  +N  G E   
Sbjct: 175 RAAAARGAQLVLVPTALAGDETSVPGI--------LLPARAVENGITLAYANHCGPE--- 223

Query: 149 TEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPE 208
                  + F G S + GP G+ +      E  +LV         +   S    +DRR E
Sbjct: 224 -----GGLVFDGGSVVVGPAGQPLGEL-GVEPGLLVVDLPDQSQDAGSDSADYLQDRRAE 277

Query: 209 LYK 211
           L++
Sbjct: 278 LHR 280


>pdb|4F4H|A Chain A, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
           From Burkholderia Thailandensis
 pdb|4F4H|B Chain B, Crystal Structure Of A Glutamine Dependent Nad+ Synthetase
           From Burkholderia Thailandensis
          Length = 565

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 71/164 (43%), Gaps = 15/164 (9%)

Query: 25  YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQW 84
           YN+ ++I   G   G YRK  +P+   + EK YF   D    VF+    K GV IC D W
Sbjct: 116 YNAASLI-VGGEVAGTYRKQDLPNTEVFDEKRYFAT-DAAPYVFELNGVKFGVVICEDVW 173

Query: 85  FPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGK 144
              AA+     GA++L  P         D +  R    R      G   +P+V  N +G 
Sbjct: 174 HASAAQLAKAAGAQVLIVPNGSPYHMNKDAV--RIDILRARIRETG---LPMVYVNLVG- 227

Query: 145 EIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFD 188
                  G+ ++ F G SF+    GE+VA     EE   + +FD
Sbjct: 228 -------GQDELVFDGGSFVLDGAGELVAKMPQFEEGNAIVEFD 264


>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
           Cysteine- Glutamate-lysine Catalytic Triad
 pdb|2DYU|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
           Cysteine- Glutamate-lysine Catalytic Triad
 pdb|2DYV|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2DYV|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
          Length = 334

 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 21/183 (11%)

Query: 5   AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG 64
           AK  GV   +    ++N   YN+  IID  G  +  YRK   P  P   E +Y  PGD G
Sbjct: 95  AKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKL-FPWNP--IEPWY--PGDLG 149

Query: 65  FKVFQTKF-AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRR 123
             V +    +K+ V IC D   PE AR    +G  +    +   ++         D W  
Sbjct: 150 MPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNVYIRISGYSTQ-------VNDQWIL 202

Query: 124 VMQGHAGANVVPLVASNRIGKEIIETEHGKSQIT-FYGNSFIAGP-------TGEIVAAA 175
             + +A  N++  V+ N  G + +    G+ QI  F G + + G        TGEI    
Sbjct: 203 TNRSNAWHNLMYTVSVNLAGYDNVFYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKM 262

Query: 176 DDK 178
            D 
Sbjct: 263 ADN 265


>pdb|2PLQ|A Chain A, Crystal Structure Of The Amidase From Geobacillus Pallidus
           Rapc8
          Length = 348

 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 20/178 (11%)

Query: 21  NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80
           N A YN++ +I+  G  +  YRK  IP  P   E +Y  PGDT +     K  KI + +C
Sbjct: 112 NKAPYNTLVLINNKGEIVQKYRKI-IPWCP--IEGWY--PGDTTYVTEGPKGLKISLIVC 166

Query: 81  WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASN 140
            D  +PE  R   ++GAE++          Q     +++    + +  A AN   +  +N
Sbjct: 167 DDGNYPEIWRDCAMKGAELIV-------RCQGYMYPAKEQQIMMAKAMAWANNTYVAVAN 219

Query: 141 RIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSS 198
             G + +         +++G+S I G  G  +     +E  +  A+  + +++  R +
Sbjct: 220 ATGFDGV--------YSYFGHSAIIGFDGRTLGECGTEENGIQYAEVSISQIRDFRKN 269


>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
           Streptomyces Avermitilis
 pdb|3N05|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
           Streptomyces Avermitilis
          Length = 590

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 62/154 (40%), Gaps = 23/154 (14%)

Query: 41  YRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQW-----FPEAARAMVLQ 95
           + K H+P+   + E  YF PGDT   + +     I +AIC D W      P A  A    
Sbjct: 125 FAKHHLPNYGVFDEFRYFVPGDT-MPIVRLHGVDIALAICEDLWQDGGRVPAARSA---- 179

Query: 96  GAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQ 155
           GA +L    A   E   D  D+R    R     AG     L     IG        G+ +
Sbjct: 180 GAGLLLSVNASPYERDKD--DTRLELVRKRAQEAGCTTAYLAM---IG--------GQDE 226

Query: 156 ITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDL 189
           + F G+S +    GE+VA A    E  +V   DL
Sbjct: 227 LVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDL 260


>pdb|2UXY|A Chain A, Aliphatic Amidase
          Length = 341

 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 20/181 (11%)

Query: 18  EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 77
           E    A YN++ +ID +G  +  YRK  IP  P   E +Y  PG   +     K  KI +
Sbjct: 109 EHPRKAPYNTLVLIDNNGEIVQKYRKI-IPWCP--IEGWY--PGGQTYVSEGPKGMKISL 163

Query: 78  AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLV 137
            I  D  +PE  R   ++GAE++          Q     ++D    + +  A AN   + 
Sbjct: 164 IIXDDGNYPEIWRDCAMKGAELIV-------RCQGYMYPAKDQQVMMAKAMAWANNCYVA 216

Query: 138 ASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRS 197
            +N  G + +         +++G+S I G  G  +    ++E  +  AQ  L +++  R+
Sbjct: 217 VANAAGFDGV--------YSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSLSQIRDARA 268

Query: 198 S 198
           +
Sbjct: 269 N 269


>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2E2K|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2E2K|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2E2K|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2E2K|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2E2K|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2E2L|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2E2L|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2E2L|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2E2L|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2E2L|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
 pdb|2E2L|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
           Cysteine- Glutamate-Lysine Catalytic Triad
          Length = 334

 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 21/183 (11%)

Query: 5   AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG 64
           AK  GV   +    ++N   YN+  IID  G  +  YRK   P  P   E +Y  PGD G
Sbjct: 95  AKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKL-FPWNP--IEPWY--PGDLG 149

Query: 65  FKVFQ-TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRR 123
             V +    +K+ V I  D   PE AR    +G  +    +   ++         D W  
Sbjct: 150 MPVCEGPGGSKLAVCISHDGMIPELAREAAYKGCNVYIRISGYSTQ-------VNDQWIL 202

Query: 124 VMQGHAGANVVPLVASNRIGKEIIETEHGKSQIT-FYGNSFIAGP-------TGEIVAAA 175
             + +A  N++  V+ N  G + +    G+ QI  F G + + G        TGEI    
Sbjct: 203 TNRSNAWHNLMYTVSVNLAGYDNVFYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKM 262

Query: 176 DDK 178
            D 
Sbjct: 263 ADN 265


>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
           Dehydrogenase Have Different Activities And Stabilities
           But Similar Crystal Structures
 pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
           Dehydrogenase Have Different Activities And Stabilities
           But Similar Crystal Structures
 pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
           Dehydrogenase Have Different Activities And Stabilities
           But Similar Crystal Structures
 pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
           Dehydrogenase Have Different Activities And Stabilities
           But Similar Crystal Structures
 pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
           Dehydrogenase Have Different Activities And Stabilities
           But Similar Crystal Structures
 pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
           Dehydrogenase Have Different Activities And Stabilities
           But Similar Crystal Structures
 pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
           Dehydrogenase Have Different Activities And Stabilities
           But Similar Crystal Structures
 pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
           Dehydrogenase Have Different Activities And Stabilities
           But Similar Crystal Structures
          Length = 326

 Score = 29.3 bits (64), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 19/64 (29%)

Query: 114 GLDSRDHWRRVMQGHAGANVVPLVA----------------SNRI---GKEIIETEHGKS 154
           GLD RD    V+ GHAG  ++PL++                ++RI   G E++E + G  
Sbjct: 170 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAG 229

Query: 155 QITF 158
             T 
Sbjct: 230 SATL 233


>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
           Dehydrogenase Have Different Activities And Stabilities
           But Similar Crystal Structures
 pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
           Dehydrogenase Have Different Activities And Stabilities
           But Similar Crystal Structures
          Length = 362

 Score = 28.9 bits (63), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 19/64 (29%)

Query: 114 GLDSRDHWRRVMQGHAGANVVPLVA----------------SNRI---GKEIIETEHGKS 154
           GLD RD    V+ GHAG  ++PL++                ++RI   G E++E + G  
Sbjct: 206 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAG 265

Query: 155 QITF 158
             T 
Sbjct: 266 SATL 269


>pdb|3MMG|A Chain A, Crystal Structure Of Tobacco Vein Mottling Virus Protease
 pdb|3MMG|B Chain B, Crystal Structure Of Tobacco Vein Mottling Virus Protease
          Length = 241

 Score = 28.1 bits (61), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 120 HWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKE 179
           HW     G AG+ +V ++  N +G       H  +  T   N F+  P   +    D  +
Sbjct: 142 HWITTKDGQAGSPLVSIIDGNILGI------HSLTHTTNGSNYFVEFPEKFVATYLDAAD 195

Query: 180 EAVLVAQFDLDKLKSKRSSWGVF 202
                 +F+ DK+     SWG F
Sbjct: 196 GWCKNWKFNADKI-----SWGSF 213


>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
           Synthetase From Mycobacterium Tuberculosis Bound To
           Naad+ And Don
 pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
           Synthetase From Mycobacterium Tuberculosis Bound To
           Naad+ And Don
 pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
           Synthetase From Mycobacterium Tuberculosis Bound To
           Naad+ And Don
 pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
           Synthetase From Mycobacterium Tuberculosis Bound To
           Naad+ And Don
 pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
           From M. Tuberculosis Bound To AmpPPI, NAD+, AND
           GLUTAMATE
 pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
           From M. Tuberculosis Bound To AmpPPI, NAD+, AND
           GLUTAMATE
 pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
           From M. Tuberculosis Bound To AmpPPI, NAD+, AND
           GLUTAMATE
 pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
           From M. Tuberculosis Bound To AmpPPI, NAD+, AND
           GLUTAMATE
          Length = 680

 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 48/207 (23%), Positives = 76/207 (36%), Gaps = 42/207 (20%)

Query: 25  YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIG-------- 76
           YN+  +I   G+ LG+  KS++P    + E+    PGD      +   A +         
Sbjct: 105 YNTAVVIH-RGAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVAFGTDLLFA 163

Query: 77  ----------VAICWDQWFP-----EAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHW 121
                     V IC D + P     EAA A     A +   P  IG          R   
Sbjct: 164 ASDLPGFVLHVEICEDMFVPMPPSAEAALAGATVLANLSGSPITIG----------RAED 213

Query: 122 RRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEA 181
           RR++   A A  +        G+         + + + G + I    G ++A ++   + 
Sbjct: 214 RRLLARSASARCLAAYVYAAAGE-----GESTTDLAWDGQTMI-WENGALLAESERFPKG 267

Query: 182 VL--VAQFDLDKLKSKRSSWGVFRDRR 206
           V   VA  D + L+S+R   G F D R
Sbjct: 268 VRRSVADVDTELLRSERLRMGTFDDNR 294


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.137    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,422,024
Number of Sequences: 62578
Number of extensions: 323488
Number of successful extensions: 659
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 26
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)