Query 027467
Match_columns 223
No_of_seqs 142 out of 1235
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03381 agmatine_aguB N-carb 100.0 2E-45 4.2E-50 302.9 22.1 208 1-212 71-278 (279)
2 cd07587 ML_beta-AS mammalian-l 100.0 4.5E-45 9.7E-50 309.3 22.5 209 1-215 143-362 (363)
3 PLN02747 N-carbamolyputrescine 100.0 2.9E-44 6.3E-49 298.4 23.6 219 1-219 77-295 (296)
4 PLN00202 beta-ureidopropionase 100.0 2.4E-44 5.1E-49 307.9 23.2 210 1-216 164-384 (405)
5 cd07568 ML_beta-AS_like mammal 100.0 5.1E-43 1.1E-47 289.7 22.9 203 1-214 82-285 (287)
6 cd07573 CPA N-carbamoylputresc 100.0 1.6E-41 3.5E-46 280.4 22.8 210 1-214 71-283 (284)
7 PRK10438 C-N hydrolase family 100.0 1.7E-41 3.6E-46 276.3 21.5 190 1-210 66-255 (256)
8 cd07569 DCase N-carbamyl-D-ami 100.0 4.3E-41 9.3E-46 280.1 21.5 206 1-214 80-301 (302)
9 cd07564 nitrilases_CHs Nitrila 100.0 4.6E-41 1E-45 279.2 20.2 206 1-214 81-295 (297)
10 PLN02504 nitrilase 100.0 7.9E-41 1.7E-45 282.1 19.2 204 1-218 110-327 (346)
11 cd07586 nitrilase_8 Uncharacte 100.0 3.1E-40 6.6E-45 270.7 22.1 200 2-211 65-266 (269)
12 cd07580 nitrilase_2 Uncharacte 100.0 1.1E-40 2.3E-45 273.4 19.3 196 1-210 70-268 (268)
13 cd07583 nitrilase_5 Uncharacte 100.0 2.9E-40 6.3E-45 268.6 21.0 187 1-206 66-253 (253)
14 cd07576 R-amidase_like Pseudom 100.0 2.4E-40 5.1E-45 269.2 20.4 188 1-208 67-254 (254)
15 cd07579 nitrilase_1_R2 Second 100.0 7.3E-41 1.6E-45 275.4 16.9 190 1-211 63-269 (279)
16 cd07565 aliphatic_amidase alip 100.0 7.6E-40 1.7E-44 270.8 22.5 191 1-215 75-269 (291)
17 cd07584 nitrilase_6 Uncharacte 100.0 1.2E-39 2.5E-44 265.7 20.5 186 1-206 70-257 (258)
18 cd07577 Ph0642_like Pyrococcus 100.0 7.9E-40 1.7E-44 266.9 18.8 191 1-210 67-259 (259)
19 PLN02798 nitrilase 100.0 1.9E-39 4.2E-44 268.2 21.0 197 1-211 77-283 (286)
20 cd07585 nitrilase_7 Uncharacte 100.0 4.4E-39 9.5E-44 262.8 20.6 193 1-210 67-261 (261)
21 cd07581 nitrilase_3 Uncharacte 100.0 1.6E-38 3.4E-43 258.7 21.5 188 1-206 66-255 (255)
22 cd07572 nit Nit1, Nit 2, and r 100.0 9E-39 2E-43 261.4 20.0 191 1-206 67-265 (265)
23 cd07567 biotinidase_like bioti 100.0 7.8E-39 1.7E-43 264.5 17.4 172 1-194 93-280 (299)
24 cd07570 GAT_Gln-NAD-synth Glut 100.0 4.9E-38 1.1E-42 256.6 18.5 191 2-209 66-260 (261)
25 cd07582 nitrilase_4 Uncharacte 100.0 1.5E-37 3.3E-42 257.8 21.0 191 1-201 82-285 (294)
26 PRK13286 amiE acylamide amidoh 100.0 5.6E-37 1.2E-41 257.9 21.3 180 1-201 87-272 (345)
27 cd07575 Xc-1258_like Xanthomon 100.0 5.7E-37 1.2E-41 249.2 20.6 186 1-207 65-250 (252)
28 cd07578 nitrilase_1_R1 First n 100.0 3E-37 6.4E-42 251.7 18.7 186 1-209 70-258 (258)
29 cd07574 nitrilase_Rim1_like Un 100.0 5E-37 1.1E-41 253.1 20.2 195 1-209 77-280 (280)
30 PRK13287 amiF formamidase; Pro 100.0 1.6E-36 3.4E-41 254.8 20.9 181 1-201 88-271 (333)
31 cd07197 nitrilase Nitrilase su 100.0 5.1E-36 1.1E-40 243.2 21.4 184 1-204 68-251 (253)
32 COG0388 Predicted amidohydrola 100.0 1.2E-35 2.6E-40 244.2 21.2 192 1-207 72-264 (274)
33 KOG0807 Carbon-nitrogen hydrol 100.0 7.7E-37 1.7E-41 235.4 12.5 199 2-213 83-291 (295)
34 cd07571 ALP_N-acyl_transferase 100.0 2.7E-34 5.9E-39 235.6 17.9 170 1-191 64-251 (270)
35 PRK13981 NAD synthetase; Provi 100.0 9.5E-34 2.1E-38 252.5 21.5 176 1-191 66-243 (540)
36 PRK02628 nadE NAD synthetase; 100.0 1.2E-31 2.7E-36 243.5 20.9 192 1-206 81-295 (679)
37 KOG0806 Carbon-nitrogen hydrol 100.0 4.6E-32 9.9E-37 218.0 10.9 203 1-215 86-296 (298)
38 PLN02339 NAD+ synthase (glutam 100.0 9.7E-30 2.1E-34 230.9 19.5 185 6-204 77-289 (700)
39 PRK00302 lnt apolipoprotein N- 100.0 4.8E-30 1E-34 227.3 16.4 169 1-190 283-470 (505)
40 KOG0808 Carbon-nitrogen hydrol 100.0 8.2E-30 1.8E-34 198.9 14.3 214 1-220 153-377 (387)
41 KOG0805 Carbon-nitrogen hydrol 100.0 7.6E-30 1.6E-34 197.6 13.1 205 1-219 103-321 (337)
42 cd07566 ScNTA1_like Saccharomy 100.0 2.1E-29 4.5E-34 208.5 15.1 158 1-166 74-265 (295)
43 TIGR00546 lnt apolipoprotein N 100.0 6.5E-29 1.4E-33 213.7 14.6 150 1-171 223-391 (391)
44 COG0815 Lnt Apolipoprotein N-a 99.9 1.6E-24 3.5E-29 190.4 16.1 170 2-192 294-483 (518)
45 PF00795 CN_hydrolase: Carbon- 99.9 8E-24 1.7E-28 164.2 9.6 105 1-105 76-186 (186)
46 PRK12291 apolipoprotein N-acyl 99.9 4.2E-23 9.2E-28 178.1 14.9 135 8-169 263-413 (418)
47 PRK13825 conjugal transfer pro 99.8 7.6E-20 1.6E-24 156.0 15.3 133 3-141 246-387 (388)
48 KOG2303 Predicted NAD synthase 99.4 1.8E-13 3.9E-18 116.3 7.1 178 8-199 80-285 (706)
49 PLN02798 nitrilase 85.2 6.9 0.00015 32.2 8.5 79 88-173 34-118 (286)
50 PF09587 PGA_cap: Bacterial ca 84.5 14 0.00031 29.7 9.8 77 64-145 120-228 (250)
51 cd07576 R-amidase_like Pseudom 83.4 13 0.00028 29.7 9.2 78 87-174 23-106 (254)
52 cd07581 nitrilase_3 Uncharacte 81.8 11 0.00024 30.2 8.2 79 87-174 21-106 (255)
53 cd07583 nitrilase_5 Uncharacte 81.4 8.8 0.00019 30.8 7.5 78 87-173 23-105 (253)
54 cd07567 biotinidase_like bioti 81.3 14 0.0003 30.9 8.7 86 87-174 31-144 (299)
55 TIGR03381 agmatine_aguB N-carb 81.3 14 0.0003 30.1 8.7 76 87-173 23-109 (279)
56 cd07584 nitrilase_6 Uncharacte 81.2 14 0.00029 29.7 8.6 78 88-174 24-111 (258)
57 cd07568 ML_beta-AS_like mammal 81.2 10 0.00022 31.1 7.9 77 88-174 35-122 (287)
58 cd07572 nit Nit1, Nit 2, and r 80.7 12 0.00027 30.1 8.2 79 87-173 22-108 (265)
59 cd07564 nitrilases_CHs Nitrila 78.7 16 0.00035 30.2 8.4 79 87-175 24-121 (297)
60 PLN00202 beta-ureidopropionase 77.6 17 0.00037 31.8 8.4 80 87-174 117-206 (405)
61 cd07573 CPA N-carbamoylputresc 77.4 19 0.00041 29.4 8.4 78 87-174 23-111 (284)
62 PLN02747 N-carbamolyputrescine 77.1 18 0.00038 29.9 8.2 78 87-174 29-116 (296)
63 cd07587 ML_beta-AS mammalian-l 77.0 15 0.00032 31.6 7.8 79 88-174 95-185 (363)
64 cd07197 nitrilase Nitrilase su 76.5 19 0.00041 28.5 8.0 77 87-173 22-106 (253)
65 cd07566 ScNTA1_like Saccharomy 73.6 23 0.00049 29.5 7.9 72 95-174 35-116 (295)
66 cd07585 nitrilase_7 Uncharacte 73.3 29 0.00062 27.9 8.4 74 88-171 24-103 (261)
67 cd07569 DCase N-carbamyl-D-ami 71.4 29 0.00062 28.8 8.1 82 87-174 29-123 (302)
68 cd07582 nitrilase_4 Uncharacte 67.9 43 0.00092 27.6 8.4 74 95-175 41-125 (294)
69 PLN02504 nitrilase 67.5 42 0.00091 28.6 8.4 78 88-175 49-150 (346)
70 COG1225 Bcp Peroxiredoxin [Pos 66.2 11 0.00024 28.3 4.1 23 24-46 119-141 (157)
71 cd07579 nitrilase_1_R2 Second 63.4 46 0.00099 27.3 7.7 73 88-170 23-98 (279)
72 PF10087 DUF2325: Uncharacteri 63.3 21 0.00046 24.1 4.8 40 95-144 47-86 (97)
73 PF00795 CN_hydrolase: Carbon- 63.0 37 0.00081 25.5 6.7 74 89-173 27-114 (186)
74 KOG2792 Putative cytochrome C 62.6 7.8 0.00017 31.5 2.8 45 1-45 215-262 (280)
75 COG1504 Uncharacterized conser 61.8 44 0.00094 23.5 5.9 93 14-126 9-109 (121)
76 cd07571 ALP_N-acyl_transferase 61.6 41 0.0009 27.3 7.1 73 89-173 32-104 (270)
77 cd07565 aliphatic_amidase alip 61.6 70 0.0015 26.4 8.5 73 95-174 38-117 (291)
78 cd07578 nitrilase_1_R1 First n 58.5 83 0.0018 25.2 8.3 77 88-173 25-109 (258)
79 cd07381 MPP_CapA CapA and rela 57.3 96 0.0021 24.6 10.7 75 64-143 122-217 (239)
80 KOG0807 Carbon-nitrogen hydrol 55.3 58 0.0013 26.4 6.5 85 86-176 37-127 (295)
81 PLN02274 inosine-5'-monophosph 54.8 70 0.0015 28.9 7.8 99 26-140 197-296 (505)
82 PF01784 NIF3: NIF3 (NGG1p int 52.8 47 0.001 26.7 5.9 61 74-139 32-94 (241)
83 PRK09461 ansA cytoplasmic aspa 52.6 98 0.0021 26.3 8.0 65 73-144 210-275 (335)
84 cd07574 nitrilase_Rim1_like Un 52.6 58 0.0013 26.4 6.6 75 88-171 26-114 (280)
85 KOG0806 Carbon-nitrogen hydrol 52.2 23 0.00049 29.6 3.9 27 22-48 125-151 (298)
86 PRK13287 amiF formamidase; Pro 50.3 1.3E+02 0.0028 25.5 8.4 73 95-175 51-130 (333)
87 cd07575 Xc-1258_like Xanthomon 49.2 1E+02 0.0022 24.6 7.4 72 89-172 26-102 (252)
88 TIGR01019 sucCoAalpha succinyl 47.5 83 0.0018 26.1 6.6 52 85-146 76-127 (286)
89 PF07355 GRDB: Glycine/sarcosi 46.9 93 0.002 26.6 6.8 66 71-143 47-121 (349)
90 PRK09437 bcp thioredoxin-depen 46.8 29 0.00063 25.4 3.6 17 26-42 121-137 (154)
91 cd07570 GAT_Gln-NAD-synth Glut 43.9 93 0.002 24.9 6.4 21 87-107 23-43 (261)
92 PF09142 TruB_C: tRNA Pseudour 42.8 33 0.00072 20.8 2.7 35 125-176 9-43 (56)
93 PRK13286 amiE acylamide amidoh 42.5 1.5E+02 0.0032 25.3 7.6 76 95-175 50-132 (345)
94 cd02971 PRX_family Peroxiredox 42.2 57 0.0012 23.0 4.5 20 25-44 110-129 (140)
95 cd07580 nitrilase_2 Uncharacte 42.0 1.6E+02 0.0035 23.6 7.6 73 87-171 23-106 (268)
96 COG0388 Predicted amidohydrola 41.9 1.8E+02 0.0038 23.5 7.8 22 87-108 26-47 (274)
97 PTZ00253 tryparedoxin peroxida 41.5 53 0.0012 25.4 4.4 15 24-38 126-140 (199)
98 TIGR02608 delta_60_rpt delta-6 41.3 62 0.0014 19.6 3.7 31 160-190 3-37 (55)
99 PF00809 Pterin_bind: Pterin b 40.3 70 0.0015 25.1 5.0 56 75-143 71-126 (210)
100 cd00411 Asparaginase Asparagin 40.1 1.9E+02 0.0042 24.4 7.9 63 73-143 210-272 (323)
101 smart00870 Asparaginase Aspara 39.5 2E+02 0.0043 24.3 7.8 64 73-144 212-275 (323)
102 smart00037 CNX Connexin homolo 38.8 15 0.00033 19.8 0.6 10 78-87 21-30 (34)
103 cd03014 PRX_Atyp2cys Peroxired 38.5 68 0.0015 22.9 4.4 20 25-44 110-129 (143)
104 PTZ00314 inosine-5'-monophosph 36.9 3.2E+02 0.0069 24.7 9.2 68 27-105 194-262 (495)
105 TIGR00486 YbgI_SA1388 dinuclea 36.8 2.2E+02 0.0048 22.9 7.5 59 75-139 37-97 (249)
106 PF12681 Glyoxalase_2: Glyoxal 35.0 1.3E+02 0.0029 19.7 5.5 35 3-39 72-106 (108)
107 PF13342 Toprim_Crpt: C-termin 34.9 65 0.0014 20.0 3.2 35 3-38 23-57 (62)
108 KOG2733 Uncharacterized membra 34.5 1.6E+02 0.0035 25.6 6.3 61 78-143 66-147 (423)
109 TIGR01917 gly_red_sel_B glycin 34.4 1.8E+02 0.004 25.6 6.8 69 68-143 40-117 (431)
110 TIGR01918 various_sel_PB selen 34.2 1.9E+02 0.004 25.6 6.8 69 68-143 40-117 (431)
111 PRK05678 succinyl-CoA syntheta 33.8 1.1E+02 0.0023 25.5 5.3 53 84-146 77-129 (291)
112 PF05221 AdoHcyase: S-adenosyl 33.1 67 0.0015 26.4 3.8 36 70-105 41-76 (268)
113 PHA01633 putative glycosyl tra 32.2 1.5E+02 0.0032 25.3 5.9 38 95-145 222-259 (335)
114 cd08343 ED_TypeI_classII_C C-t 32.2 1.6E+02 0.0034 20.5 5.5 41 3-44 78-118 (131)
115 TIGR02717 AcCoA-syn-alpha acet 31.8 2.7E+02 0.0059 24.7 7.8 59 84-146 76-134 (447)
116 PRK00522 tpx lipid hydroperoxi 31.6 1E+02 0.0023 22.9 4.6 16 27-42 133-148 (167)
117 COG0499 SAM1 S-adenosylhomocys 31.3 98 0.0021 26.8 4.6 59 69-138 42-100 (420)
118 PF08140 Cuticle_1: Crustacean 30.7 71 0.0015 18.1 2.5 13 160-172 1-13 (40)
119 cd07254 Glo_EDI_BRP_like_20 Th 30.4 1E+02 0.0022 20.9 4.1 19 25-43 99-117 (120)
120 cd01424 MGS_CPS_II Methylglyox 30.4 81 0.0018 21.6 3.5 47 84-139 55-101 (110)
121 cd08362 BphC5-RrK37_N_like N-t 29.4 1.1E+02 0.0025 20.6 4.2 37 4-40 78-114 (120)
122 cd00340 GSH_Peroxidase Glutath 29.2 57 0.0012 23.8 2.7 16 27-42 125-140 (152)
123 cd03015 PRX_Typ2cys Peroxiredo 29.0 83 0.0018 23.5 3.6 17 26-42 121-137 (173)
124 PRK13191 putative peroxiredoxi 28.8 1.1E+02 0.0024 24.1 4.4 14 25-38 124-137 (215)
125 TIGR00520 asnASE_II L-asparagi 28.3 3.3E+02 0.0072 23.3 7.4 63 73-143 239-301 (349)
126 PLN00125 Succinyl-CoA ligase [ 27.7 2.5E+02 0.0055 23.5 6.5 53 85-146 82-134 (300)
127 TIGR02153 gatD_arch glutamyl-t 27.4 4E+02 0.0087 23.4 7.9 63 73-143 276-338 (404)
128 PRK11096 ansB L-asparaginase I 27.2 3.6E+02 0.0079 23.1 7.5 63 73-143 233-295 (347)
129 COG1066 Sms Predicted ATP-depe 27.0 1.5E+02 0.0033 26.2 5.1 40 1-42 202-250 (456)
130 COG0252 AnsB L-asparaginase/ar 26.5 4.2E+02 0.0091 22.8 9.1 63 73-143 230-293 (351)
131 TIGR02540 gpx7 putative glutat 26.2 67 0.0014 23.5 2.6 14 28-41 123-136 (153)
132 PF00710 Asparaginase: Asparag 26.1 3.5E+02 0.0077 22.6 7.2 64 72-144 201-264 (313)
133 PLN02494 adenosylhomocysteinas 26.0 1.5E+02 0.0032 26.7 5.0 37 69-105 43-79 (477)
134 cd04697 Nudix_Hydrolase_38 Mem 25.1 1.2E+02 0.0025 21.3 3.6 19 27-45 4-22 (126)
135 cd00401 AdoHcyase S-adenosyl-L 25.1 1.7E+02 0.0036 25.8 5.2 36 70-105 34-69 (413)
136 PRK04183 glutamyl-tRNA(Gln) am 25.0 4.7E+02 0.01 23.1 7.9 63 73-143 289-351 (419)
137 PRK10799 metal-binding protein 24.7 3.7E+02 0.008 21.6 7.7 58 76-139 37-96 (247)
138 PRK10382 alkyl hydroperoxide r 24.2 1.5E+02 0.0032 22.8 4.3 16 25-40 119-134 (187)
139 PF02548 Pantoate_transf: Keto 24.1 1E+02 0.0022 25.3 3.5 32 72-106 15-46 (261)
140 PRK13978 ribose-5-phosphate is 23.6 3E+02 0.0064 22.1 5.9 72 73-171 23-96 (228)
141 PF01081 Aldolase: KDPG and KH 23.6 1.4E+02 0.0031 23.2 4.1 32 71-105 58-89 (196)
142 PTZ00137 2-Cys peroxiredoxin; 23.6 1E+02 0.0022 25.3 3.4 18 24-41 187-204 (261)
143 PF07302 AroM: AroM protein; 23.6 88 0.0019 25.0 2.9 41 88-141 170-210 (221)
144 PLN02424 ketopantoate hydroxym 23.6 2.8E+02 0.0061 23.7 6.0 70 71-143 33-106 (332)
145 TIGR01182 eda Entner-Doudoroff 23.4 1.5E+02 0.0032 23.3 4.2 23 83-105 67-89 (204)
146 PRK00881 purH bifunctional pho 23.1 2.9E+02 0.0064 25.1 6.3 53 75-140 453-507 (513)
147 TIGR00936 ahcY adenosylhomocys 23.0 1.9E+02 0.0041 25.4 5.1 36 70-105 30-65 (406)
148 PRK15000 peroxidase; Provision 22.7 1.4E+02 0.0031 23.1 4.0 14 25-38 125-138 (200)
149 cd07266 HPCD_N_class_II N-term 22.5 1.4E+02 0.003 20.3 3.6 15 26-40 101-115 (121)
150 PRK06015 keto-hydroxyglutarate 22.4 1.5E+02 0.0033 23.3 4.0 23 83-105 63-85 (201)
151 COG0297 GlgA Glycogen synthase 22.2 4.4E+02 0.0096 23.8 7.3 28 79-106 351-378 (487)
152 cd02969 PRX_like1 Peroxiredoxi 21.8 3.3E+02 0.0072 20.0 6.4 18 159-176 110-127 (171)
153 cd00532 MGS-like MGS-like doma 21.4 1.5E+02 0.0033 20.5 3.5 50 84-139 55-105 (112)
154 cd07406 MPP_CG11883_N Drosophi 21.3 4.4E+02 0.0094 21.2 7.6 43 65-107 120-182 (257)
155 cd04693 Nudix_Hydrolase_34 Mem 21.2 1.5E+02 0.0032 20.7 3.5 20 27-46 4-23 (127)
156 cd07261 Glo_EDI_BRP_like_11 Th 20.9 2E+02 0.0044 19.1 4.2 34 5-41 80-113 (114)
157 PF01344 Kelch_1: Kelch motif; 20.8 1.6E+02 0.0036 16.1 3.1 26 8-35 12-37 (47)
158 cd02966 TlpA_like_family TlpA- 20.5 1E+02 0.0023 20.1 2.6 18 24-41 97-114 (116)
159 PRK05476 S-adenosyl-L-homocyst 20.2 2.7E+02 0.0059 24.6 5.5 36 70-105 46-81 (425)
160 cd07411 MPP_SoxB_N Thermus the 20.2 4.7E+02 0.01 21.1 8.3 23 168-190 228-250 (264)
161 PRK06552 keto-hydroxyglutarate 20.1 1.8E+02 0.0039 23.0 4.0 23 83-105 75-97 (213)
162 PF13911 AhpC-TSA_2: AhpC/TSA 20.0 1.1E+02 0.0024 21.0 2.7 17 28-44 98-114 (115)
No 1
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=2e-45 Score=302.94 Aligned_cols=208 Identities=73% Similarity=1.241 Sum_probs=186.2
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 80 (223)
|+++|++++++|++|+++++++++||++++|+|+|+++++|+|+||+..+.+.|..+|++|...+.+|+++++|+|++||
T Consensus 71 l~~~a~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC 150 (279)
T TIGR03381 71 FQALAKELGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGIC 150 (279)
T ss_pred HHHHHHHcCcEEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEE
Confidence 46899999999999999988889999999999999999999999998765677888999997447899999999999999
Q ss_pred ecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeee
Q 027467 81 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG 160 (223)
Q Consensus 81 ~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G 160 (223)
||++|||+++.++++|||++++|++|+..+++.......+|..+.++||+||++|++.||++|.... ..++..|.|
T Consensus 151 ~D~~fpe~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~----~~~~~~~~G 226 (279)
T TIGR03381 151 WDQWFPETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVG----DGGEQTFYG 226 (279)
T ss_pred cCCcChHHHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccCC----CCCcceEee
Confidence 9999999999999999999999999876655544445678999999999999999999999996521 012567999
Q ss_pred eeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHHH
Q 027467 161 NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKV 212 (223)
Q Consensus 161 ~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~~ 212 (223)
.|+|++|+|+++++++.+++++++++||++.++..|..+++++++|+++|+.
T Consensus 227 ~S~i~~p~G~il~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~r~~~y~~ 278 (279)
T TIGR03381 227 SSFIADHTGELVAEAGRSEEAVLVATFDLDEIAKQRAAWGFFRDRRPELYGP 278 (279)
T ss_pred eEEEECCCCcEeecCCCCCCceEEEEeCHHHHHHHHhcCchhhhCChhhccC
Confidence 9999999999999998888999999999999999999999999999999974
No 2
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=4.5e-45 Score=309.29 Aligned_cols=209 Identities=34% Similarity=0.559 Sum_probs=183.2
Q ss_pred CHHHHHHcCcEEeeeeeeecC---CceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEE
Q 027467 1 MQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 77 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~---~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~ 77 (223)
|+++|++++++|++|+.++++ +++||++++|+|+|+++++|+|+||+..+.|.|+.+|.+|+..+++|+++++|||+
T Consensus 143 l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~griG~ 222 (363)
T cd07587 143 CQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGKIAV 222 (363)
T ss_pred HHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCceEEE
Confidence 578999999999999988763 68999999999999999999999999877788999999998547899999999999
Q ss_pred EEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccc----cC-
Q 027467 78 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETE----HG- 152 (223)
Q Consensus 78 ~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~----~g- 152 (223)
+||||.+|||+++.++.+|||++++|++|+.. ....+|..++++||+||++||+.+|++|.+..+.+ .|
T Consensus 223 ~ICyD~~fPe~~r~la~~GAdiil~Psa~~~~------~~~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~ 296 (363)
T cd07587 223 NICYGRHHPLNWLMYGLNGAEIVFNPSATVGA------LSEPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGK 296 (363)
T ss_pred EEecccCCcHHHHHHHHcCCcEEEECCCcCCC------CchHHHHHHHHHHHHhcCcEEEEecccccccccccccccccc
Confidence 99999999999999999999999999997531 12468999999999999999999999996532110 01
Q ss_pred ---CcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHHHhHh
Q 027467 153 ---KSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 215 (223)
Q Consensus 153 ---~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~~~~~ 215 (223)
.+...|.|+|+|++|+|+++++++..+|++++++||++.+++.|..+++++++|+++|+.+..
T Consensus 297 ~~~~~~~~f~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~~~r~~~y~~~~~ 362 (363)
T cd07587 297 PAHKDFGHFYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRMTARYEMYADFLA 362 (363)
T ss_pred ccccccccccceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCccCCHHHHHHHhc
Confidence 112468999999999999999987677999999999999999999999999999999998764
No 3
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=2.9e-44 Score=298.38 Aligned_cols=219 Identities=90% Similarity=1.449 Sum_probs=194.3
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 80 (223)
|+++|++++++|++|++++.++++||++++|+|+|+++++|+|+||++.+.+.|..+|.+|...+++|+++++|+|++||
T Consensus 77 l~~~a~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~~~~~~~~~rig~~IC 156 (296)
T PLN02747 77 MQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAIC 156 (296)
T ss_pred HHHHHHHcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCCeeEEcCCccEEEEEE
Confidence 46899999999999999888889999999999999999999999998766667888999997447899999999999999
Q ss_pred ecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeee
Q 027467 81 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG 160 (223)
Q Consensus 81 ~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G 160 (223)
||.+||++++.++.+|+|+|++|++|+..+++.+.....+|..+.++||++|++||+.+|++|....+...|.....|.|
T Consensus 157 ~D~~fpe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~~~G 236 (296)
T PLN02747 157 WDQWFPEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITFYG 236 (296)
T ss_pred ccccchHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCceEee
Confidence 99999999999999999999999999776666554456789999999999999999999999964322222333578999
Q ss_pred eeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHHHhHhcCCC
Q 027467 161 NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGS 219 (223)
Q Consensus 161 ~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~~~~~~~~~ 219 (223)
.|+|++|+|+++++++.++|++++++||++.++..|..++.++++|+++|..+++.+|.
T Consensus 237 ~S~i~~p~G~vl~~~~~~~e~~~~adid~~~~~~~r~~~~~~~~~r~~~~~~~~~~~~~ 295 (296)
T PLN02747 237 GSFIAGPTGEIVAEADDKAEAVLVAEFDLDQIKSKRASWGVFRDRRPDLYKVLLTLDGN 295 (296)
T ss_pred eeEEECCCCCEeecCCCCCCcEEEEEEcHHHHHHHHHhCCchhhcChhHHHHHHhhccC
Confidence 99999999999999988789999999999999999999999999999999999988774
No 4
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=2.4e-44 Score=307.93 Aligned_cols=210 Identities=30% Similarity=0.520 Sum_probs=184.2
Q ss_pred CHHHHHHcCcEEeeeeeeec---CCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEE
Q 027467 1 MQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 77 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~---~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~ 77 (223)
|+++|++++++|++|+.+++ ++++||++++|+++|+++++|+|+||++++.|.|+.+|.+|....++|+++++|||+
T Consensus 164 l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~~vf~t~~gkiGv 243 (405)
T PLN00202 164 LQELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIAV 243 (405)
T ss_pred HHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCceEEEeCCCeEEE
Confidence 47889999999999988864 357999999999999999999999999988888999999998546799999999999
Q ss_pred EEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccc----cC-
Q 027467 78 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETE----HG- 152 (223)
Q Consensus 78 ~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~----~g- 152 (223)
+||||.+|||++|.++.+|||+|++|++|+.. ....+|..+.++||+||++||+.+|++|.+..+.+ .|
T Consensus 244 ~ICYD~~FPE~~r~la~~GAdiIl~Psa~~~~------~~~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~ 317 (405)
T PLN00202 244 NICYGRHHPLNWLAFGLNGAEIVFNPSATVGD------LSEPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGK 317 (405)
T ss_pred EEccccccHHHHHHHHHCCCcEEEECCCCCCc------cCHHHHHHHHHHHHHhcCCEEEEecccccccccccccccccc
Confidence 99999999999999999999999999997531 23468999999999999999999999997431100 01
Q ss_pred ---CcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHHHhHhc
Q 027467 153 ---KSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTL 216 (223)
Q Consensus 153 ---~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~~~~~~ 216 (223)
++...|.|+|+|++|+|+++++++.++|++++++||++.+++.|..++++.++|+++|+.++.+
T Consensus 318 ~~~~~~~~f~G~S~Iv~P~G~vla~~~~~~E~llvadIDl~~v~~~R~~~~~~~~rR~~ly~~~~~~ 384 (405)
T PLN00202 318 PQHKDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMTARYEMYADFFAE 384 (405)
T ss_pred ccccccccccceeEEEcCCCCEeccCCCCCCcEEEEEeCHHHHHHHHHhCCcccccCHhHHHHHHHh
Confidence 1124689999999999999999876779999999999999999999999999999999999875
No 5
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=5.1e-43 Score=289.73 Aligned_cols=203 Identities=44% Similarity=0.753 Sum_probs=180.8
Q ss_pred CHHHHHHcCcEEeeeeeeec-CCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEE
Q 027467 1 MQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAI 79 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~-~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~I 79 (223)
|+++|++++++|++|+.++. ++++||++++|+|+|+++++|+|+||++++.|.|..+|.+|+..+.+|+++++|+|++|
T Consensus 82 l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~~~f~~~~~~iG~~I 161 (287)
T cd07568 82 FAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIGVYI 161 (287)
T ss_pred HHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCCceEEcCCceEEEEE
Confidence 46889999999999998775 46899999999999999999999999988888899999999844789999999999999
Q ss_pred eecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeee
Q 027467 80 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFY 159 (223)
Q Consensus 80 C~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~ 159 (223)
|||.+|||+++.++++|+|++++|++|+.. .....|....++||+||++|++.+|++|... +.+...|.
T Consensus 162 CyD~~fpe~~r~la~~Ga~li~~ps~~~~~------~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~-----~~~~~~~~ 230 (287)
T cd07568 162 CYDRHFPEGWRALGLNGAEIVFNPSATVAG------LSEYLWKLEQPAAAVANGYFVGAINRVGTEA-----PWNIGEFY 230 (287)
T ss_pred EecccCchHHHHHHHCCCeEEEECCcCCCC------CchhhhHHHHHHHHHHCCcEEEEeccccccC-----CCccceEe
Confidence 999999999999999999999999997531 1235788888999999999999999999643 11135789
Q ss_pred eeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHHHhH
Q 027467 160 GNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLL 214 (223)
Q Consensus 160 G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~~~~ 214 (223)
|.|+|++|+|+++++++.+++++++++||++.++..|..+++++++|+++|+.++
T Consensus 231 G~S~ii~p~G~il~~~~~~~~~~l~a~id~~~~~~~R~~~~~~~~~r~~~y~~~~ 285 (287)
T cd07568 231 GSSYFVDPRGQFVASASRDKDELLVAELDLDLIREVRDTWQFYRDRRPETYGELT 285 (287)
T ss_pred ceeEEECCCceEEEecCCCCCeEEEEEecHHHHHHHHhhCchhhhcCHHHhHHhh
Confidence 9999999999999999888899999999999999999999999999999999765
No 6
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=1.6e-41 Score=280.37 Aligned_cols=210 Identities=67% Similarity=1.119 Sum_probs=184.6
Q ss_pred CHHHHHHcCcEEeeeeeeec-CCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEE
Q 027467 1 MQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAI 79 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~-~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~I 79 (223)
|+++|++++++|++|+.++. ++++||++++|+|+|+++.+|+|+||++.+.+.|..+|.+|...+.+|+++++|+|++|
T Consensus 71 l~~la~~~~i~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~I 150 (284)
T cd07573 71 FQALAKELGVVIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLI 150 (284)
T ss_pred HHHHHHHCCEEEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCCceEecCCceEEEEE
Confidence 46899999999999998875 45899999999999999999999999876667888899999834889999999999999
Q ss_pred eecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCC--CCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCccee
Q 027467 80 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDG--LDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQIT 157 (223)
Q Consensus 80 C~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~--~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~ 157 (223)
|||.+||++++.++++|+|++++|++|+..+.+.. .....+|..+.++||+||++|++.||++|....+ ..+..
T Consensus 151 C~D~~fpe~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~----~~~~~ 226 (284)
T cd07573 151 CWDQWFPEAARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDP----GSGIT 226 (284)
T ss_pred eccccchHHHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccCCC----CCCce
Confidence 99999999999999999999999999865433222 2345789999999999999999999999965321 12578
Q ss_pred eeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHHHhH
Q 027467 158 FYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLL 214 (223)
Q Consensus 158 ~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~~~~ 214 (223)
|.|.|+|++|+|+++++++.+++++++++||++.++..|..+++++++|+++|+.++
T Consensus 227 ~~G~S~i~~p~G~i~~~~~~~~~~v~~a~id~~~~~~~r~~~~~~~~~~~~~~~~~~ 283 (284)
T cd07573 227 FYGSSFIADPFGEILAQASRDEEEILVAEFDLDEIEEVRRAWPFFRDRRPDLYGALT 283 (284)
T ss_pred eeceeEEECCCCCeeeccCCCCCcEEEEEecHHHHHHHHhhChhhhhcChhhhhhhh
Confidence 999999999999999999988899999999999999999999999999999999754
No 7
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=1.7e-41 Score=276.26 Aligned_cols=190 Identities=21% Similarity=0.363 Sum_probs=165.0
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 80 (223)
|+++|+++++.|+++..++.++++||++++|+|+|. ++.|+|+||++. +.|..+|++|+. +.+|+++++|||++||
T Consensus 66 l~~~A~~~~~~i~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~iG~~IC 141 (256)
T PRK10438 66 MTAKAQQTNALIAGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNA-RVIVEWRGWRILPLVC 141 (256)
T ss_pred HHHHHHHcCeEEEEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCC-ceEEEECCEEEEEEEE
Confidence 478999999865544445556789999999999997 679999999753 368889999985 8999999999999999
Q ss_pred ecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeee
Q 027467 81 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG 160 (223)
Q Consensus 81 ~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G 160 (223)
||++|||++|.+ +|+|++++|++|+. ....+|+.+.++||+||++||+.||++|... ++..|.|
T Consensus 142 yD~~fPe~~r~l--~gad~i~~~s~~~~-------~~~~~~~~~~~aRA~En~~~vv~~n~~G~~~-------~~~~~~G 205 (256)
T PRK10438 142 YDLRFPVWSRNR--NDYDLALYVANWPA-------PRSLHWQTLLTARAIENQAYVAGCNRVGSDG-------NGHHYRG 205 (256)
T ss_pred eecCCHHHHHhh--cCCCEEEEecCCCC-------CchHHHHHHHHHHHHhcCcEEEEecccccCC-------CCCEEcC
Confidence 999999999986 78999999999753 2346799999999999999999999999542 1468999
Q ss_pred eeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHH
Q 027467 161 NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELY 210 (223)
Q Consensus 161 ~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y 210 (223)
.|+|+||+|+++++++.+++++++++||++.++..|..+++++++++..|
T Consensus 206 ~S~ivdP~G~vl~~~~~~~e~~i~~~idl~~~~~~R~~~~~l~~r~~~~~ 255 (256)
T PRK10438 206 DSRIINPQGEIIATAEPHQATRIDAELSLEALQEYREKFPAWRDADEFTL 255 (256)
T ss_pred ceEEECCCCcEEEEcCCCCcEEEEEEECHHHHHHHHHhCCccccCChhhc
Confidence 99999999999999988889999999999999999999999999876655
No 8
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=4.3e-41 Score=280.06 Aligned_cols=206 Identities=35% Similarity=0.511 Sum_probs=176.5
Q ss_pred CHHHHHHcCcEEeeeeeeec-CC---ceeEEEEEECCCCceeeeeeccCCCCCCCC--------cccccccCCCCCcceE
Q 027467 1 MQELAKELGVVMPVSFFEEA-NN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGY--------QEKFYFNPGDTGFKVF 68 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~-~~---~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~--------~e~~~~~~G~~~~~~~ 68 (223)
|+++|++++++|++|++++. ++ ++||++++|+|+|+++++|+|+||++++++ .|..+|.+|+..+.+|
T Consensus 80 l~~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~~~v~ 159 (302)
T cd07569 80 LFDRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPVF 159 (302)
T ss_pred HHHHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCCCceE
Confidence 46789999999999998753 34 799999999999999999999999876543 3777899998338899
Q ss_pred eeCCceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCC---CCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCcc
Q 027467 69 QTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSE---PQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKE 145 (223)
Q Consensus 69 ~~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~---~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~ 145 (223)
+++++|||++||||.+|||+++.++.+|||++++|++++.. +.........+|....++||+||++||+.+|++|..
T Consensus 160 ~~~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~ 239 (302)
T cd07569 160 RVPGGIMGMCICNDRRWPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTWVVAAAKAGME 239 (302)
T ss_pred ecCCceEEEEEeeccccchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccceEEEeeccccC
Confidence 99999999999999999999999999999999998775321 111111224568778899999999999999999965
Q ss_pred ccccccCCcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhc-cCcccccchhHHHHhH
Q 027467 146 IIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSS-WGVFRDRRPELYKVLL 214 (223)
Q Consensus 146 ~~~~~~g~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~-~~~~~~~r~~~y~~~~ 214 (223)
. +..|.|.|+|++|+|+++++++.+++++++++||++.++..|.. .+++.++|+++|+.++
T Consensus 240 ~--------~~~~~G~S~ii~p~G~vla~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~r~~~y~~~~ 301 (302)
T cd07569 240 D--------GCDLIGGSCIVAPTGEIVAQATTLEDEVIVADCDLDLCREGRETVFNFARHRRPEHYGLIA 301 (302)
T ss_pred C--------CceEecceEEECCCCCEEEecCCCCCcEEEEEecHHHhhhcccccCcchhhcCHHHHhhhh
Confidence 3 57899999999999999999998789999999999999999985 8889999999999775
No 9
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=4.6e-41 Score=279.22 Aligned_cols=206 Identities=27% Similarity=0.437 Sum_probs=175.3
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCC-CcceEeeCCceEEEEE
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTKFAKIGVAI 79 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~~ig~~I 79 (223)
|+++|++++++|++|++++.++++||++++|+|+|+++++|+|+||+. .|..+|.+|.. .+++|+++++|+|++|
T Consensus 81 l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~----~E~~~~~~g~~~~~~v~~~~~~kig~~I 156 (297)
T cd07564 81 LAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH----AERLVWGQGDGSGLRVVDTPIGRLGALI 156 (297)
T ss_pred HHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCCc----hhhhhcccCCCCCceEEecCCceEEEEE
Confidence 468899999999999998888899999999999999999999999864 58888998863 3689999999999999
Q ss_pred eecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccc-ccc------C
Q 027467 80 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIE-TEH------G 152 (223)
Q Consensus 80 C~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~-~~~------g 152 (223)
|||.+|||+++.++.+|||+++++++... + ......+|..+.++||+||++||+.||++|..... ... +
T Consensus 157 CyD~~fPe~~r~~a~~ga~ii~~~~~~~~-~---~~~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~~~ 232 (297)
T cd07564 157 CWENYMPLARYALYAQGEQIHVAPWPDFS-P---YYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEEAD 232 (297)
T ss_pred EhhcCCHHHHHHHHHCCCeEEEECCCCcc-c---ccccHHHHHHHHHHHHHhcCCEEEEcccccChhHcccccccccccc
Confidence 99999999999999999999998665211 1 11346899999999999999999999999964210 000 1
Q ss_pred CcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccc-cchhHHHHhH
Q 027467 153 KSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD-RRPELYKVLL 214 (223)
Q Consensus 153 ~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~-~r~~~y~~~~ 214 (223)
.+...|.|.|+|++|+|+++++++.+++++++++||++.++..|...+++++ +|+++|..-+
T Consensus 233 ~~~~~~~G~S~iv~P~G~il~~~~~~~e~~l~a~id~~~~~~~r~~~~~~~~~~r~~~~~~~~ 295 (297)
T cd07564 233 PLEVLGGGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAKLDFDPVGHYSRPDVFSLTV 295 (297)
T ss_pred cccccCCCceEEECCCCCeecCCCCCCceEEEEEecHHHHHHHHhcCCCCCCCCCchhhceee
Confidence 1246789999999999999999987789999999999999999999999988 6999998644
No 10
>PLN02504 nitrilase
Probab=100.00 E-value=7.9e-41 Score=282.08 Aligned_cols=204 Identities=25% Similarity=0.424 Sum_probs=175.9
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCC-CcceEeeCCceEEEEE
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVFQTKFAKIGVAI 79 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~~ig~~I 79 (223)
|+++|++++++|++|++++.++++||++++|+|+|+++++|+|.|+.+ .|+.+|.+|.. .+++|+++++|||++|
T Consensus 110 l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~g~~~~vf~~~~griG~lI 185 (346)
T PLN02504 110 LAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGDGSTIPVYDTPIGKIGAVI 185 (346)
T ss_pred HHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCCCCCCceEEcCCceEEEEE
Confidence 467899999999999999888899999999999999999999998765 48888988862 4789999999999999
Q ss_pred eecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCcccc------------
Q 027467 80 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEII------------ 147 (223)
Q Consensus 80 C~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~------------ 147 (223)
|||.+|||++|.++++|||++++|++|. ..+|..++++||+||++||+.+|++|....
T Consensus 186 CyD~~fPe~~r~la~~Gadii~~p~~~~----------~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~ 255 (346)
T PLN02504 186 CWENRMPLLRTAMYAKGIEIYCAPTADS----------RETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGT 255 (346)
T ss_pred eccchhHHHHHHHHHCCCeEEEECCCCC----------chhHHHHHHHHHHccCcEEEEecccccccccCcccccccccc
Confidence 9999999999999999999999998852 367899999999999999999999973211
Q ss_pred ccccCCcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccc-cchhHHHHhHhcCC
Q 027467 148 ETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD-RRPELYKVLLTLDG 218 (223)
Q Consensus 148 ~~~~g~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~-~r~~~y~~~~~~~~ 218 (223)
+...+.+...|.|.|+|++|+|+++++....+|++++++||++.+++.|..++.+.+ +|+++|++++...-
T Consensus 256 ~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l~~~~~~ 327 (346)
T PLN02504 256 EEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSLTVNEHP 327 (346)
T ss_pred cccccccccccCcceEEECCCCCEecCCCCCCCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEEEEcCCC
Confidence 000112347799999999999999998875678999999999999999999998855 59999999887743
No 11
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.1e-40 Score=270.73 Aligned_cols=200 Identities=33% Similarity=0.551 Sum_probs=176.4
Q ss_pred HHHHHHc-CcEEeeeeeeec-CCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEE
Q 027467 2 QELAKEL-GVVMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAI 79 (223)
Q Consensus 2 ~~~A~~~-~i~i~~G~~~~~-~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~I 79 (223)
+++++.. ++.|++|++++. ++++||++++| ++|+++++|+|+||++++.|.|..+|++|+. +.+|+++++|||++|
T Consensus 65 ~~l~~~a~~~~ii~G~~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~-~~vf~~~~~~ig~~I 142 (269)
T cd07586 65 QALAEASGGICVVFGFVEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLPTYGLFEEGRYFAPGSH-LRAFDTRFGRAGVLI 142 (269)
T ss_pred HHHHHHcCCCEEEEeCeEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCCCCCccceeeeecCCCc-ceEEEeCCeEEEEEE
Confidence 4556555 899999998876 48999999999 8999999999999987766788899999996 899999999999999
Q ss_pred eecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeee
Q 027467 80 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFY 159 (223)
Q Consensus 80 C~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~ 159 (223)
|||.+||++++.++.+|||++++|++++............+|..+.++||+||+++|+.||++|... ...|.
T Consensus 143 C~D~~fp~~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~--------~~~~~ 214 (269)
T cd07586 143 CEDAWHPSLPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGVED--------GVYFW 214 (269)
T ss_pred EeccCCcHHHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecCcC--------CceEe
Confidence 9999999999999999999999999975432111222346899999999999999999999999654 56789
Q ss_pred eeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHH
Q 027467 160 GNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYK 211 (223)
Q Consensus 160 G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~ 211 (223)
|+|+|++|+|+++++++.+++++++++||++.++..|...+.++++++++|+
T Consensus 215 G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~ 266 (269)
T cd07586 215 GGSRVVDPDGEVVAEAPLFEEDLLVAELDRSAIRRARFFSPTFRDEDIRLVL 266 (269)
T ss_pred CCcEEECCCCCEEEecCCccccEEEEEecHHHHHHHHhhCccccccChhhhh
Confidence 9999999999999999888889999999999999999999999999999997
No 12
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.1e-40 Score=273.38 Aligned_cols=196 Identities=40% Similarity=0.673 Sum_probs=171.6
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 80 (223)
++++|++++++|++|++++.++++||++++|+++|. +.+|+|+||++ .|..+|.+|+..+.+|+++++|+|++||
T Consensus 70 ~~~~a~~~~~~i~~G~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~----~e~~~f~~G~~~~~v~~~~~~~ig~~IC 144 (268)
T cd07580 70 WAELAAELGLYIVAGFAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN----EEKLLFEPGDLGLPVFDTPFGRIGVAIC 144 (268)
T ss_pred HHHHHHHcCcEEEeecccccCCceEEEEEEECCCCc-EEEEEEecCCc----hhcceecCCCCCCceEEcCCCcEEEEEE
Confidence 467899999999999998888899999999999995 79999999986 4888999998547899999999999999
Q ss_pred ecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeee
Q 027467 81 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG 160 (223)
Q Consensus 81 ~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G 160 (223)
||++||++++.++.+|||+|++|++|+...... .....+|..+.++||+||++||+.||++|... +..|.|
T Consensus 145 ~D~~fpe~~r~~~~~ga~li~~ps~~~~~~~~~-~~~~~~~~~~~~arA~en~~~vv~~n~~G~~~--------~~~~~G 215 (268)
T cd07580 145 YDGWFPETFRLLALQGADIVCVPTNWVPMPRPP-EGGPPMANILAMAAAHSNGLFIACADRVGTER--------GQPFIG 215 (268)
T ss_pred CcccchHHHHHHHHcCCCEEEEcCcccccCCcc-cccCcHHHHhhHHHHhhCCcEEEEEeeeeecc--------CceEee
Confidence 999999999999999999999999986432211 12235788888999999999999999999653 468999
Q ss_pred eeEEECCCCCeeeecCCC-CceEEEEEechhhHHhhhhc--cCcccccchhHH
Q 027467 161 NSFIAGPTGEIVAAADDK-EEAVLVAQFDLDKLKSKRSS--WGVFRDRRPELY 210 (223)
Q Consensus 161 ~S~iv~p~G~il~~~~~~-~e~~l~~~i~l~~~~~~r~~--~~~~~~~r~~~y 210 (223)
.|+|++|+|.++++++.+ ++++++++||++.++..|+. .++++++|+++|
T Consensus 216 ~S~ii~p~G~~~~~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~~~r~~~y 268 (268)
T cd07580 216 QSLIVGPDGWPLAGPASGDEEEILLADIDLTAARRKRIWNSNDVLRDRRPDLY 268 (268)
T ss_pred eeEEECCCCCeeeecCCCCCCeEEEEEecHHHHHHhhcCCcchhhhhcCcccC
Confidence 999999999999998743 78999999999999999988 488999999886
No 13
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.9e-40 Score=268.59 Aligned_cols=187 Identities=37% Similarity=0.623 Sum_probs=169.4
Q ss_pred CHHHHHHcCcEEeeeee-eecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEE
Q 027467 1 MQELAKELGVVMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAI 79 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~-~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~I 79 (223)
|+++|++++++|++|+. +..++++||++++|+|+|+++.+|+|+||+++ +.|..+|.+|+. +.+|+++++|+|++|
T Consensus 66 l~~~a~~~~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~-~~v~~~~~~rig~~I 142 (253)
T cd07583 66 LSELAKKHGVNIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDE-LEVFELDGGKVGLFI 142 (253)
T ss_pred HHHHHHHcCcEEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCC-ceEEEeCCeEEEEEE
Confidence 46899999999999975 55678999999999999999999999999875 358889999985 899999999999999
Q ss_pred eecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeee
Q 027467 80 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFY 159 (223)
Q Consensus 80 C~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~ 159 (223)
|||.+|||+++.++.+|||++++|++|+. ....+|..+.++||+||++|++.+|++|... +..|.
T Consensus 143 C~D~~~pe~~r~~~~~ga~ll~~ps~~~~-------~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~--------~~~~~ 207 (253)
T cd07583 143 CYDLRFPELFRKLALEGAEILFVPAEWPA-------ARIEHWRTLLRARAIENQAFVVACNRVGTDG--------GNEFG 207 (253)
T ss_pred EeccccHHHHHHHHHcCCcEEEECCCCCC-------CchHHHHHHHHHHHHHhCCEEEEEcCcccCC--------Cceec
Confidence 99999999999999999999999999753 2457898899999999999999999999653 56789
Q ss_pred eeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccc
Q 027467 160 GNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 206 (223)
Q Consensus 160 G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r 206 (223)
|.|+|++|+|+++++++. ++++++++||++.++.+|..+++++++|
T Consensus 208 G~S~ii~p~G~il~~~~~-~~~~~~~~i~l~~~~~~r~~~~~~~~~~ 253 (253)
T cd07583 208 GHSMVIDPWGEVLAEAGE-EEEILTAEIDLEEVAEVRKKIPVFKDRR 253 (253)
T ss_pred ceeEEECCCchhheecCC-CceEEEEEecHHHHHHHHHhCCchhhcC
Confidence 999999999999999987 7899999999999999999999888876
No 14
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=2.4e-40 Score=269.18 Aligned_cols=188 Identities=37% Similarity=0.573 Sum_probs=169.7
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 80 (223)
|+++|++++++|++|+++..++++||++++|+|+|+++++|+|+||++ +.|..+|.+|.. +.+|+++++|+|++||
T Consensus 67 l~~~a~~~~~~ii~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~---~~E~~~~~~G~~-~~v~~~~~~kig~~IC 142 (254)
T cd07576 67 LRAIARRHGIAIVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFG---DSERAAFTPGDR-FPVVELRGLRVGLLIC 142 (254)
T ss_pred HHHHHHHcCCEEEEeccccCCCceEEEEEEECCCCCEeeEEEeeccCC---cchhhhccCCCC-ceEEEECCeEEEEEEe
Confidence 468899999999999999888899999999999999999999999976 257789999986 8999999999999999
Q ss_pred ecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeee
Q 027467 81 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG 160 (223)
Q Consensus 81 ~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G 160 (223)
||++|||+++.++++|||++++|++++.. + ..+|..+.++||+||++|++.||++|... +..|.|
T Consensus 143 ~D~~fpe~~~~~~~~gadii~~p~~~~~~-----~--~~~~~~~~~~rA~en~~~vv~an~~G~~~--------~~~~~G 207 (254)
T cd07576 143 YDVEFPELVRALALAGADLVLVPTALMEP-----Y--GFVARTLVPARAFENQIFVAYANRCGAED--------GLTYVG 207 (254)
T ss_pred ecCCCCHHHHHHHHCCCCEEEECCccCCC-----c--chhhhhhhHHHHHhCCCEEEEEcccCCCC--------Cceeee
Confidence 99999999999999999999999986431 1 24677889999999999999999999653 467999
Q ss_pred eeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchh
Q 027467 161 NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPE 208 (223)
Q Consensus 161 ~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~ 208 (223)
.|+|++|+|+++++++.+ +++++++||++.++..|...++++++|++
T Consensus 208 ~S~i~~p~G~il~~~~~~-e~~~~~~id~~~~~~~R~~~~~~~~~~~~ 254 (254)
T cd07576 208 LSSIAGPDGTVLARAGRG-EALLVADLDPAALAAARRENPYLADRRPE 254 (254)
T ss_pred eeEEECCCCCEeEecCCC-CeEEEEEcCHHHHHhhhhcCchhhhcCCC
Confidence 999999999999999887 89999999999999999999988888764
No 15
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.3e-41 Score=275.43 Aligned_cols=190 Identities=28% Similarity=0.471 Sum_probs=157.0
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 80 (223)
|+++|++++++|++|++++.++++||++++|+++| ++++|+|+||++ .|..+|.+|+. +.+|+++++|+|++||
T Consensus 63 l~~lA~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~----~E~~~f~~G~~-~~v~~~~~~kiG~~IC 136 (279)
T cd07579 63 LRRLARRLRLYLVAGFAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE----PERSWATPGDT-WPVYDLPLGRVGLLIG 136 (279)
T ss_pred HHHHHHHcCeEEEEeceEccCCcEEEEEEEEeCCe-eEEEEecccCCC----cchhhccCCCC-CeeEEcCceeEEEEEe
Confidence 46899999999999999888889999999999999 679999999986 48889999986 8999999999999999
Q ss_pred ecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCC------------C-CcHHHHHHHHHHHHhhcCceEEEEcCCCcccc
Q 027467 81 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDG------------L-DSRDHWRRVMQGHAGANVVPLVASNRIGKEII 147 (223)
Q Consensus 81 ~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~------------~-~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~ 147 (223)
||++|||++|.++++|||+|++|++|+....+.| . ....+|. ++++||+||++||+.||++|..
T Consensus 137 yD~~fPe~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~~g~~-- 213 (279)
T cd07579 137 HDALFPEAGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANVPDPA-- 213 (279)
T ss_pred ccccCcHHHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeeccCCc--
Confidence 9999999999999999999999999853111000 0 1125787 6899999999999999999843
Q ss_pred ccccCCcceeeeeeeEEECCCCCeeee----cCCCCceEEEEEechhhHHhhhhccCcccccchhHHH
Q 027467 148 ETEHGKSQITFYGNSFIAGPTGEIVAA----ADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYK 211 (223)
Q Consensus 148 ~~~~g~~~~~~~G~S~iv~p~G~il~~----~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~ 211 (223)
..|.|.|+|++|+|.++.. ++ .+|++++++||++.++. .++++.++|+++|+
T Consensus 214 --------~~~~G~S~ii~P~G~v~~~~~~~~~-~~e~~l~a~id~~~~~~---~~~~~~~rr~~~~~ 269 (279)
T cd07579 214 --------RGYTGWSGVFGPDTFAFPRQEAAIG-DEEGIAWALIDTSNLDS---RYPTNVVRRKDLVR 269 (279)
T ss_pred --------cccccccEEECCCeEEcchhhcccC-CCCcEEEEEecchhhcc---cCCchhhhhHHHHH
Confidence 2468999999999999733 43 45889999999998876 34555555555554
No 16
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=7.6e-40 Score=270.82 Aligned_cols=191 Identities=26% Similarity=0.389 Sum_probs=165.2
Q ss_pred CHHHHHHcCcEEeeeeeeecC---CceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeC-CceEE
Q 027467 1 MQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIG 76 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~---~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ig 76 (223)
|+++|++++++|++|++++.+ +++||++++|+|+|+++.+|+|+||+. +...|.+|+..+.++++. ++|||
T Consensus 75 l~~lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~~v~~~~~g~riG 149 (291)
T cd07565 75 FAEACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGTPVCEGPKGSKIA 149 (291)
T ss_pred HHHHHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCceeeECCCCCEEE
Confidence 468999999999999988763 689999999999999999999999853 223478997436788885 67999
Q ss_pred EEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcce
Q 027467 77 VAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQI 156 (223)
Q Consensus 77 ~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~ 156 (223)
++||||++|||++|.++++|||++++|++|+. ....+|..+.++||+||++||+.||++|... ..
T Consensus 150 ~~ICyD~~fPe~~r~la~~GAdill~ps~~~~-------~~~~~w~~~~~aRA~En~~~vv~aN~~G~~~--------~~ 214 (291)
T cd07565 150 LIICHDGMYPEIARECAYKGAELIIRIQGYMY-------PAKDQWIITNKANAWCNLMYTASVNLAGFDG--------VF 214 (291)
T ss_pred EEEEcCCCCcHHHHHHHHCCCeEEEECCcCCC-------CcchHHHHHHHHHHHhcCcEEEEecccccCC--------Cc
Confidence 99999999999999999999999999999753 1246899999999999999999999999643 57
Q ss_pred eeeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHHHhHh
Q 027467 157 TFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 215 (223)
Q Consensus 157 ~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~~~~~ 215 (223)
.|.|.|+|+||+|+++++++.+++++++++||++.++..|..+++ ++++|+.-++
T Consensus 215 ~~~G~S~ivdP~G~ila~~~~~~e~i~~adid~~~~~~~R~~~~~----~~~~~~~~~~ 269 (291)
T cd07565 215 SYFGESMIVNFDGRTLGEGGREPDEIVTAELSPSLVRDARKNWGS----ENNLYKLGHR 269 (291)
T ss_pred eeeeeeEEECCCCCEEEeCCCCCCcEEEEEEcHHHHHHHHhcCCC----CCcHHHhhhh
Confidence 899999999999999999988788999999999999999999985 4577776543
No 17
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.2e-39 Score=265.74 Aligned_cols=186 Identities=41% Similarity=0.717 Sum_probs=168.3
Q ss_pred CHHHHHHcCcEEeeeeeeecC--CceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEE
Q 027467 1 MQELAKELGVVMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVA 78 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~--~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~ 78 (223)
|+++|++++++|++|+++..+ +++||++++|+|+|+++..|+|+||++ .|..+|.+|+. +.+|+++++|+|++
T Consensus 70 l~~~a~~~~i~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~-~~~~~~~~~~~g~~ 144 (258)
T cd07584 70 FSELAKELGVYIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQ-YPVFDTPFGKIGVM 144 (258)
T ss_pred HHHHHHHcCeEEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCC-CeeEEcCCceEEEE
Confidence 467999999999999988653 589999999999999999999999975 47779999985 89999999999999
Q ss_pred EeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceee
Q 027467 79 ICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITF 158 (223)
Q Consensus 79 IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~ 158 (223)
||||++||++++.++++|+|++++|++|+.. ..+.|....++||+||++||+.+|++|... +..+
T Consensus 145 IC~D~~fpe~~r~~~~~gadll~~ps~~~~~-------~~~~~~~~~~~rA~En~~~vv~~n~~g~~~--------~~~~ 209 (258)
T cd07584 145 ICYDMGFPEVARILTLKGAEVIFCPSAWREQ-------DADIWDINLPARALENTVFVAAVNRVGNEG--------DLVL 209 (258)
T ss_pred EEcCccChHHHHHHHHCCCcEEEECCccCCC-------CchHHHHHHHHHHHhCCcEEEEECccccCC--------Ccee
Confidence 9999999999999999999999999997542 346788889999999999999999998643 5678
Q ss_pred eeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccc
Q 027467 159 YGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 206 (223)
Q Consensus 159 ~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r 206 (223)
.|.|+|++|+|+++++++.+++++++++||++.++..|...|+++++|
T Consensus 210 ~G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~p~~~~~~ 257 (258)
T cd07584 210 FGKSKILNPRGQVLAEASEEAEEILYAEIDLDAIADYRMTLPYLKDRK 257 (258)
T ss_pred cceeEEECCCCceeeecCCCCCcEEEEEeCHHHHHHHHhhCchhhhcC
Confidence 999999999999999999888999999999999999999999988775
No 18
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.9e-40 Score=266.94 Aligned_cols=191 Identities=41% Similarity=0.698 Sum_probs=168.1
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 80 (223)
|+++|++++++|++|++++.++++||++++|+++| ++++|+|+||++ .|..+|++|+..+.+|+++++|+|++||
T Consensus 67 l~~~a~~~~i~ii~G~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~----~e~~~~~~G~~~~~~~~~~~~~ig~~IC 141 (259)
T cd07577 67 LQELARETGAYIVAGLPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY----EEKLFFEPGDTGFRVFDIGDIRIGVMIC 141 (259)
T ss_pred HHHHHHHhCcEEEecceeccCCceEEEEEEECCCc-cEeeEeeccCCh----hhhccccCCCCCCceEEeCCcEEEEEEE
Confidence 46889999999999999988889999999999999 999999999975 5788999998447899999999999999
Q ss_pred ecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeee
Q 027467 81 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG 160 (223)
Q Consensus 81 ~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G 160 (223)
||.+|||+++.++.+|||++++|++|.. ..|..+.++||+||++|++.||++|.... +.....|.|
T Consensus 142 ~D~~fpe~~r~~~~~Gadli~~ps~~~~----------~~~~~~~~~rA~en~~~vv~~n~~G~~~~----~~~~~~~~G 207 (259)
T cd07577 142 FDWYFPEAARTLALKGADIIAHPANLVL----------PYCPKAMPIRALENRVFTITANRIGTEER----GGETLRFIG 207 (259)
T ss_pred cCcccchHHHHHHHcCCCEEEECCccCC----------chhhhhhhHhhhhcCceEEEEecCcccCC----CCCCceEee
Confidence 9999999999999999999999999642 24667789999999999999999996531 112567899
Q ss_pred eeEEECCCCCeeeecCCCCceEEEEEechhhHHhhh--hccCcccccchhHH
Q 027467 161 NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKR--SSWGVFRDRRPELY 210 (223)
Q Consensus 161 ~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r--~~~~~~~~~r~~~y 210 (223)
.|+|++|+|+++++++.++++++++++|++.++..| ...++++++|+++|
T Consensus 208 ~S~i~~p~G~i~~~~~~~~e~~~~~~id~~~~~~~~~~~~~~~~~~~r~~~~ 259 (259)
T cd07577 208 KSQITSPKGEVLARAPEDGEEVLVAEIDPRLARDKRINEENDIFKDRRPEFY 259 (259)
T ss_pred eeEEECCCCCEEeecCCCCCcEEEEEEchHHhhcccccccCchhhhcCcccC
Confidence 999999999999999888899999999999987754 67788899998876
No 19
>PLN02798 nitrilase
Probab=100.00 E-value=1.9e-39 Score=268.17 Aligned_cols=197 Identities=28% Similarity=0.492 Sum_probs=171.1
Q ss_pred CHHHHHHcCcEEeee-eeee--cCCceeEEEEEECCCCceeeeeeccCCCCC-----CCCcccccccCCCCCcceEeeCC
Q 027467 1 MQELAKELGVVMPVS-FFEE--ANNAHYNSIAIIDADGSDLGLYRKSHIPDG-----PGYQEKFYFNPGDTGFKVFQTKF 72 (223)
Q Consensus 1 l~~~A~~~~i~i~~G-~~~~--~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~-----~~~~e~~~~~~G~~~~~~~~~~~ 72 (223)
|+++|+++++.|++| ++++ +++++||++++|+|+|+++++|+|+||++. +.+.|..+|.+|+. +.++++++
T Consensus 77 l~~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~ 155 (286)
T PLN02798 77 YRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKT-IVAVDSPV 155 (286)
T ss_pred HHHHHHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCe-eeEEecCC
Confidence 468999999999987 4454 467899999999999999999999999531 22457788999985 89999999
Q ss_pred ceEEEEEeecCCCchHHHHHH-HcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCcccccccc
Q 027467 73 AKIGVAICWDQWFPEAARAMV-LQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEH 151 (223)
Q Consensus 73 ~~ig~~IC~D~~~pe~~~~~~-~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~ 151 (223)
+|+|++||||.+||++++.++ ++|+|+|++|++|+.. ....+|..+.++||+||++||+.+|++|...
T Consensus 156 ~k~g~~IC~D~~fpe~~r~~a~~~Gadlil~ps~~~~~------~~~~~~~~~~~~rAien~~~vv~an~~G~~~----- 224 (286)
T PLN02798 156 GRLGLTVCYDLRFPELYQQLRFEHGAQVLLVPSAFTKP------TGEAHWEVLLRARAIETQCYVIAAAQAGKHN----- 224 (286)
T ss_pred ceEEEEEEEcccChHHHHHHHHhCCCcEEEECCcCCCC------CcHHHHHHHHHHHHHHhCCEEEEecccCcCC-----
Confidence 999999999999999999998 9999999999986531 2346888899999999999999999998643
Q ss_pred CCcceeeeeeeEEECCCCCeeeecCC-CCceEEEEEechhhHHhhhhccCcccccchhHHH
Q 027467 152 GKSQITFYGNSFIAGPTGEIVAAADD-KEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYK 211 (223)
Q Consensus 152 g~~~~~~~G~S~iv~p~G~il~~~~~-~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~ 211 (223)
....+.|.|+|++|+|+++++++. ++|++++++||++.++..|..++++.++|++.|-
T Consensus 225 --~~~~~~G~S~ii~p~G~il~~~~~~~~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~~ 283 (286)
T PLN02798 225 --EKRESYGHALIIDPWGTVVARLPDRLSTGIAVADIDLSLLDSVRTKMPIAEHRRSLEFW 283 (286)
T ss_pred --CCceeeeeeEEECCCccchhhcCCCCCCCEEEEEecHHHHHHHHHhCcchhccchhhhh
Confidence 146789999999999999999874 5789999999999999999999999999998763
No 20
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.4e-39 Score=262.79 Aligned_cols=193 Identities=34% Similarity=0.596 Sum_probs=171.4
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 80 (223)
|+++|++++++|++|++++.++++||++++|+++|. +.+|+|.||++ .|..+|.+|.. +.+|+++++|+|++||
T Consensus 67 l~~~a~~~~~~i~~G~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~----~E~~~~~~G~~-~~v~~~~~~rig~~IC 140 (261)
T cd07585 67 LSDLARRYGLTILAGLIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR----REHPYIAAGDE-YPVFATPGVRFGILIC 140 (261)
T ss_pred HHHHHHHcCcEEEEeccccCCCceeEEEEEECCCCc-EeEEeeecCCc----cccceEcCCCC-CceEEcCCceEEEEEE
Confidence 467899999999999998888899999999999997 68999999987 47789999985 8999999999999999
Q ss_pred ecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeee
Q 027467 81 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG 160 (223)
Q Consensus 81 ~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G 160 (223)
+|.+|||+++.++++|+|+|++|++|+.... ....+.|...+++||+||++|++.+|++|... +..|.|
T Consensus 141 ~D~~~pe~~r~l~~~gadlil~p~~~~~~~~---~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~~~--------~~~~~G 209 (261)
T cd07585 141 YDNHFPENVRATALLGAEILFAPHATPGTTS---PKGREWWMRWLPARAYDNGVFVAACNGVGRDG--------GEVFPG 209 (261)
T ss_pred cCCcCcHHHHHHHHCCCCEEEECCccCCCCC---cchHHHHHHHhHHHHhhcCeEEEEecccccCC--------Cceecc
Confidence 9999999999999999999999998654211 12356788889999999999999999999643 567899
Q ss_pred eeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhc--cCcccccchhHH
Q 027467 161 NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSS--WGVFRDRRPELY 210 (223)
Q Consensus 161 ~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~--~~~~~~~r~~~y 210 (223)
.|+|++|+|+++++++.+++++++++||++.++..|.. .+.++++|+++|
T Consensus 210 ~S~i~~p~G~v~~~~~~~~e~~l~~~id~~~~~~~r~~~~~~~~~~~~~~~~ 261 (261)
T cd07585 210 GAMILDPYGRVLAETTSGGDGMVVADLDLDLINTVRGRRWISFLRARRPELY 261 (261)
T ss_pred eEEEECCCCCEEeccCCCCCcEEEEEecHHHHHHhhccccCccccccCccCC
Confidence 99999999999999998889999999999999999986 467888888876
No 21
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.6e-38 Score=258.66 Aligned_cols=188 Identities=33% Similarity=0.610 Sum_probs=168.1
Q ss_pred CHHHHHHcCcEEeeeeeeecCC-ceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCC-cceEeeCCceEEEE
Q 027467 1 MQELAKELGVVMPVSFFEEANN-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG-FKVFQTKFAKIGVA 78 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~-~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~-~~~~~~~~~~ig~~ 78 (223)
|+++|++++++|++|++++.++ ++||++++|+++|+++++|+|+||++...|.|..+|.+|+.. ..+++++++|+|++
T Consensus 66 l~~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~~~~~~~~~~kig~~ 145 (255)
T cd07581 66 LARLARELGITVVAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELPPVVFVVGGVKVGLA 145 (255)
T ss_pred HHHHHHHcCeEEEEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCCceEEecCCceEEEE
Confidence 4689999999999999988654 899999999999999999999999876667788899999841 56788889999999
Q ss_pred EeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceee
Q 027467 79 ICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITF 158 (223)
Q Consensus 79 IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~ 158 (223)
||||.+||++++.++++|+|++++|++|...+ ...++|..+.++||+||++|++.+|++|. .|
T Consensus 146 IC~D~~~pe~~~~~~~~ga~lil~ps~~~~~~-----~~~~~~~~~~~~rA~en~~~vv~~n~~g~------------~~ 208 (255)
T cd07581 146 TCYDLRFPELARALALAGADVIVVPAAWVAGP-----GKEEHWETLLRARALENTVYVAAAGQAGP------------RG 208 (255)
T ss_pred EEecccCHHHHHHHHHCCCcEEEECCcccCCC-----CchHHHHHHHHHHHHHhCCEEEEEcCcCC------------Cc
Confidence 99999999999999999999999999875422 23578999999999999999999999983 57
Q ss_pred eeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccc
Q 027467 159 YGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 206 (223)
Q Consensus 159 ~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r 206 (223)
.|.|+|++|+|+++++++.. +++++++||++.+++.|...+++.|+|
T Consensus 209 ~G~S~i~~p~G~i~~~~~~~-~~~l~~~id~~~~~~~r~~~~~~~~~~ 255 (255)
T cd07581 209 IGRSMVVDPLGVVLADLGER-EGLLVADIDPERVEEAREALPVLENRR 255 (255)
T ss_pred ccceEEECCCcceeeecCCC-CcEEEEEeCHHHHHHHHHhCcchhcCC
Confidence 89999999999999999864 899999999999999999999998876
No 22
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=9e-39 Score=261.39 Aligned_cols=191 Identities=38% Similarity=0.609 Sum_probs=167.7
Q ss_pred CHHHHHHcCcEEeee-eeeecC--CceeEEEEEECCCCceeeeeeccCCCC-----CCCCcccccccCCCCCcceEeeCC
Q 027467 1 MQELAKELGVVMPVS-FFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFQTKF 72 (223)
Q Consensus 1 l~~~A~~~~i~i~~G-~~~~~~--~~~yNs~~vi~~~G~i~~~y~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~ 72 (223)
|+++|++++++|++| ++++.+ +++||++++|+|+|+++++|+|+||++ .+.|.|..+|.+|+. +.+|++++
T Consensus 67 l~~~a~~~~i~i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~-~~~~~~~~ 145 (265)
T cd07572 67 LSELAKEHGIWLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDE-VVVVDTPF 145 (265)
T ss_pred HHHHHHHCCeEEEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCc-ceEEecCC
Confidence 468899999999988 556665 799999999999999999999999953 223678889999986 89999999
Q ss_pred ceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccC
Q 027467 73 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHG 152 (223)
Q Consensus 73 ~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g 152 (223)
+|+|++||+|.+||++++.++.+|+|+|++|++|+.. ....+|..+.++||+|++++|+.+|++|...
T Consensus 146 ~~ig~~IC~D~~~pe~~r~~~~~gadli~~p~~~~~~------~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~~------ 213 (265)
T cd07572 146 GKIGLGICYDLRFPELARALARQGADILTVPAAFTMT------TGPAHWELLLRARAIENQCYVVAAAQAGDHE------ 213 (265)
T ss_pred ceEEEEEEeccCcHHHHHHHHHCCCCEEEECCCCCCC------cchHHHHHHHHHHHHhcCCEEEEEcccccCC------
Confidence 9999999999999999999999999999999986532 2346788889999999999999999999653
Q ss_pred CcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccc
Q 027467 153 KSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRR 206 (223)
Q Consensus 153 ~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r 206 (223)
+...|.|.|+|++|+|+++++++.+ +++++++||++.+++.|..++.++++|
T Consensus 214 -~~~~~~G~S~i~~p~G~il~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~~~ 265 (265)
T cd07572 214 -AGRETYGHSMIVDPWGEVLAEAGEG-EGVVVAEIDLDRLEEVRRQIPVLKHRR 265 (265)
T ss_pred -CCCeecceeEEECCCcHHHhhcCCC-CcEEEEEeCHHHHHHHHHhCcchhhcC
Confidence 1367899999999999999999877 899999999999999999999888765
No 23
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=7.8e-39 Score=264.50 Aligned_cols=172 Identities=26% Similarity=0.292 Sum_probs=149.0
Q ss_pred CHHHHHHcCcEEeeeeeeec-----------C-CceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceE
Q 027467 1 MQELAKELGVVMPVSFFEEA-----------N-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVF 68 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~-----------~-~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~ 68 (223)
|+++|++++++|++|++++. + +++||++++|+|+|+++++|+|+||+ .|..+|.+|...+.+|
T Consensus 93 l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~~~~~G~~~~~vf 167 (299)
T cd07567 93 LSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPGFDVPPEPEIVTF 167 (299)
T ss_pred HHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----ccccccCCCCCCceEE
Confidence 46899999999999988763 2 26999999999999999999999996 3778899996447899
Q ss_pred eeCCc-eEEEEEeecCCCchHHHHHHHc-CCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccc
Q 027467 69 QTKFA-KIGVAICWDQWFPEAARAMVLQ-GAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEI 146 (223)
Q Consensus 69 ~~~~~-~ig~~IC~D~~~pe~~~~~~~~-gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~ 146 (223)
+++++ |||++||||++|||++|.++++ |+|++++|++|+.. ....+|..++++||+||++||+.||++|.
T Consensus 168 ~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~~~------~~~~~w~~l~~arA~eN~~~vi~~N~~g~-- 239 (299)
T cd07567 168 DTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWFSE------LPFLTAVQIQQAWAYANGVNLLAANYNNP-- 239 (299)
T ss_pred ECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccCCC------CCchhHHHHHHHHHHHcCceEEEecCCCC--
Confidence 99976 9999999999999999999999 99999999998531 12358999999999999999999999983
Q ss_pred cccccCCcceeeeeeeEEECCC-CCeeeecCC-CCceEEEEEechhhHHh
Q 027467 147 IETEHGKSQITFYGNSFIAGPT-GEIVAAADD-KEEAVLVAQFDLDKLKS 194 (223)
Q Consensus 147 ~~~~~g~~~~~~~G~S~iv~p~-G~il~~~~~-~~e~~l~~~i~l~~~~~ 194 (223)
..+.|+|+|++|. |+++++++. .++++++++||++..++
T Consensus 240 ---------~~~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~~~ 280 (299)
T cd07567 240 ---------SAGMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPSRR 280 (299)
T ss_pred ---------cCccccceEEcCCCCcEEEEecCCCCceEEEEEccCCcccc
Confidence 2357999999999 999999864 36889999999887654
No 24
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=4.9e-38 Score=256.62 Aligned_cols=191 Identities=31% Similarity=0.507 Sum_probs=165.7
Q ss_pred HHHHHH---cCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEE
Q 027467 2 QELAKE---LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVA 78 (223)
Q Consensus 2 ~~~A~~---~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~ 78 (223)
+++|++ ++++|++|++++.++++||++++| ++|+++++|+|+||++++.+.|..+|.+|+. ..+|+++++|||++
T Consensus 66 ~~la~~~~~~~i~ii~G~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~ 143 (261)
T cd07570 66 EELAAATADLDIAVVVGLPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYGVFDEKRYFTPGDK-PDVLFFKGLRIGVE 143 (261)
T ss_pred HHHHHhcccCCcEEEEeceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCccccccccCccCCC-CCeEEECCEEEEEE
Confidence 344544 599999999998888999999999 6999999999999999888889999999995 78999999999999
Q ss_pred EeecCCCchH-HHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCccee
Q 027467 79 ICWDQWFPEA-ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQIT 157 (223)
Q Consensus 79 IC~D~~~pe~-~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~ 157 (223)
||||.+||++ ++.++++|+|++++|++|+... ....+|..+.++||+||++||+.+|++|... +..
T Consensus 144 IC~D~~fpe~~~r~~~~~ga~ll~~ps~~~~~~-----~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~--------~~~ 210 (261)
T cd07570 144 ICEDLWVPDPPSAELALAGADLILNLSASPFHL-----GKQDYRRELVSSRSARTGLPYVYVNQVGGQD--------DLV 210 (261)
T ss_pred eecccCCCCchHHHHHHcCCcEEEEeCCCcccc-----CcHHHHHHHHHHHHHHhCCcEEEEeCCCCCc--------eEE
Confidence 9999999999 9999999999999999965321 2346788889999999999999999988543 578
Q ss_pred eeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhH
Q 027467 158 FYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPEL 209 (223)
Q Consensus 158 ~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~ 209 (223)
|.|.|+|++|+|+++++++.+ +..++++|++.++..|...+..++...++
T Consensus 211 ~~G~S~ii~p~G~vl~~~~~~--~~~~~~id~~~~~~~r~~~~~~~~~~~~~ 260 (261)
T cd07570 211 FDGGSFIADNDGELLAEAPRF--EEDLADVDLDRLRSERRRNSSFLDEEAEI 260 (261)
T ss_pred EECceEEEcCCCCEEEecCcc--eEEEEEEEEecCcccccccCCCccchhhc
Confidence 999999999999999998765 67889999999999998887666554444
No 25
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.5e-37 Score=257.80 Aligned_cols=191 Identities=27% Similarity=0.382 Sum_probs=158.6
Q ss_pred CHHHHHHcCcEEeeeeeeecC---CceeEEEEEECCCCceeeeeeccCCCCCCC-------Ccc-cccccCC-CCCcceE
Q 027467 1 MQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG-------YQE-KFYFNPG-DTGFKVF 68 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~---~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~-------~~e-~~~~~~G-~~~~~~~ 68 (223)
|+++|++++++|++|+.++.+ +++||++++|+|+|+++++|+|+||+.... +.| ..++.+| ...+.++
T Consensus 82 l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~~v~ 161 (294)
T cd07582 82 LGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDALFPVA 161 (294)
T ss_pred HHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCcccccceee
Confidence 468999999999999987754 689999999999999999999999975311 112 1234554 3236789
Q ss_pred eeCCceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccc
Q 027467 69 QTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIE 148 (223)
Q Consensus 69 ~~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~ 148 (223)
+++++|||++||||++|||++|.++++|||+|++|++|+... ...+|..+.++||+||++||+.+|++|....+
T Consensus 162 ~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~psa~~~~~------~~~~~~~~~~arA~en~~~vv~aN~~G~~~~~ 235 (294)
T cd07582 162 DTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSSSEVPSV------ELDPWEIANRARALENLAYVVSANSGGIYGSP 235 (294)
T ss_pred cCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcCCCCCCc------chhhHHHHHHHHHHhcCCEEEEecccccCccc
Confidence 999999999999999999999999999999999999975421 24578888999999999999999999865310
Q ss_pred cccCCcceeeeeeeEEECCCCCeeeecCCC-CceEEEEEechhhHHhhhhccCc
Q 027467 149 TEHGKSQITFYGNSFIAGPTGEIVAAADDK-EEAVLVAQFDLDKLKSKRSSWGV 201 (223)
Q Consensus 149 ~~~g~~~~~~~G~S~iv~p~G~il~~~~~~-~e~~l~~~i~l~~~~~~r~~~~~ 201 (223)
.....|.|.|+|++|+|+++++++.+ ++++++++||++.++..|+.++.
T Consensus 236 ----~~~~~~~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~~~~~R~~~~~ 285 (294)
T cd07582 236 ----YPADSFGGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRARARPGM 285 (294)
T ss_pred ----ccCceecceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHHHHHHHHhcCc
Confidence 01357899999999999999999887 78999999999999999998863
No 26
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=5.6e-37 Score=257.93 Aligned_cols=180 Identities=23% Similarity=0.277 Sum_probs=156.1
Q ss_pred CHHHHHHcCcEEeeeee-ee----cCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeC-Cce
Q 027467 1 MQELAKELGVVMPVSFF-EE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAK 74 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~-~~----~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ 74 (223)
|+++|++++++++++.. ++ .++++||++++|+|+|+++++|+|+|++. +...|.+|+. ..+++++ +.|
T Consensus 87 l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~-----~~e~~~pG~~-~~v~~~~~G~k 160 (345)
T PRK13286 87 FAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC-----PIEGWYPGDC-TYVSEGPKGLK 160 (345)
T ss_pred HHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc-----hhhceecCCC-CEEEeCCCCcE
Confidence 47899999999998875 33 23469999999999999999999999753 3345789985 6788885 459
Q ss_pred EEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCc
Q 027467 75 IGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKS 154 (223)
Q Consensus 75 ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~ 154 (223)
||++||||.+|||++|.++.+|||+|++|++|+. ...++|..+.++||+||++||+.||++|...
T Consensus 161 iG~lIC~D~~fPE~~R~la~~GAelii~psa~~~-------~~~~~~~~~~rarA~eN~~yVv~aN~~G~~~-------- 225 (345)
T PRK13286 161 ISLIICDDGNYPEIWRDCAMKGAELIVRCQGYMY-------PAKEQQVLVAKAMAWANNCYVAVANAAGFDG-------- 225 (345)
T ss_pred EEEEEEecccChHHHHHHHHcCCeEEEEccccCC-------CchHHHHHHHHHHHHHCCCEEEEEecccccC--------
Confidence 9999999999999999999999999999998753 1346888999999999999999999999543
Q ss_pred ceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCc
Q 027467 155 QITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGV 201 (223)
Q Consensus 155 ~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~ 201 (223)
...|.|+|+|++|+|+++++++.+++++++++||++.++++|..++.
T Consensus 226 ~~~~~G~S~Ivdp~G~vla~~~~~~e~ii~adld~~~i~~~R~~~~~ 272 (345)
T PRK13286 226 VYSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSVSQIRDARRNDQS 272 (345)
T ss_pred CceeeeeEEEECCCCcEEEecCCCCCeEEEEEEeHHHHHHHHHhCCc
Confidence 46899999999999999999988788999999999999999999864
No 27
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=5.7e-37 Score=249.17 Aligned_cols=186 Identities=25% Similarity=0.402 Sum_probs=164.4
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 80 (223)
|+++|+++++.|++|++++.++++||++++++++|++ ..|+|+||++.+ .|..+|.+|+. ..+|+++++|+|++||
T Consensus 65 l~~la~~~~i~i~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~-~~~~~~~~~~ig~~IC 140 (252)
T cd07575 65 MKAQAKKKGAAITGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNE-RVIVEYKGWKILLQVC 140 (252)
T ss_pred HHHHHHHCCeEEEEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCC-ceEEEECCEEEEEEEE
Confidence 4689999999999999888888999999999999986 499999997642 57789999985 8899999999999999
Q ss_pred ecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeee
Q 027467 81 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG 160 (223)
Q Consensus 81 ~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G 160 (223)
||.+|||+++.++. +|++++|++|+. ....+|....++||+||++||+.||++|.+. .+..|.|
T Consensus 141 ~D~~~pe~~r~~~~--a~lil~~s~~~~-------~~~~~~~~~~~arA~en~~~vv~~n~~G~~~-------~~~~~~G 204 (252)
T cd07575 141 YDLRFPVWSRNTND--YDLLLYVANWPA-------PRRAAWDTLLKARAIENQAYVIGVNRVGTDG-------NGLEYSG 204 (252)
T ss_pred eccCChHHHHhhcC--CCEEEEeCCCCC-------CchHHHHHHhHHHHhhccceEEEecccccCC-------CCceEcc
Confidence 99999999998754 999999999754 2347888899999999999999999999653 1467899
Q ss_pred eeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccch
Q 027467 161 NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRP 207 (223)
Q Consensus 161 ~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~ 207 (223)
.|+|++|+|+++++++.+ ++++++++|++.++..|..++++++++.
T Consensus 205 ~S~i~~p~G~~l~~~~~~-e~~i~~~id~~~~~~~r~~~~~~~~~~~ 250 (252)
T cd07575 205 DSAVIDPLGEPLAEAEED-EGVLTATLDKEALQEFREKFPFLKDADS 250 (252)
T ss_pred eeEEECCCCceeeEcCCC-ceEEEEEECHHHHHHHHhhCCcccccCc
Confidence 999999999999999877 8999999999999999999999887753
No 28
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3e-37 Score=251.65 Aligned_cols=186 Identities=34% Similarity=0.477 Sum_probs=159.5
Q ss_pred CHHHHHHcCcEEeeeeeeec--CCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEE
Q 027467 1 MQELAKELGVVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVA 78 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~--~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~ 78 (223)
|+++|+++++.|++|++++. ++++||++++|+|+| ++.+|+|+||+. .|..||++|+..+.+|+++++|+|++
T Consensus 70 l~~~a~~~~i~ii~G~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~----~e~~~~~~g~~~~~v~~~~~~rig~~ 144 (258)
T cd07578 70 FAELAREHDCYIVVGLPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI----SEPKWAADGDLGHQVFDTEIGRIALL 144 (258)
T ss_pred HHHHHHHcCcEEEEecceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc----ccccccCCCCCCceEEECCCccEEEE
Confidence 46889999999999998765 468999999999998 789999999864 57789999984478999999999999
Q ss_pred EeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceee
Q 027467 79 ICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITF 158 (223)
Q Consensus 79 IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~ 158 (223)
||||++|||+++.++.+|++++++|++|.... .....| .+||+||+++++.+|++|... ...|
T Consensus 145 IC~D~~fpe~~r~~~~~ga~ll~~ps~~~~~~-----~~~~~~----~~rA~en~~~vv~an~~G~~~--------~~~~ 207 (258)
T cd07578 145 ICMDIHFFETARLLALGGADVICHISNWLAER-----TPAPYW----INRAFENGCYLIESNRWGLER--------GVQF 207 (258)
T ss_pred EeeCCCchHHHHHHHHcCCCEEEEcCCCCCCC-----CcchHH----HHhhhcCCeEEEEecceeccC--------Ccce
Confidence 99999999999999999999999999975311 112334 479999999999999999653 4689
Q ss_pred eeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhc-cCcccccchhH
Q 027467 159 YGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSS-WGVFRDRRPEL 209 (223)
Q Consensus 159 ~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~-~~~~~~~r~~~ 209 (223)
.|.|++++|+|+++++++. ++++++++||++.++..|.. .+++.++|+++
T Consensus 208 ~G~S~ii~p~G~il~~~~~-~e~~~~a~id~~~~~~~r~~~~~~~~~~~~~~ 258 (258)
T cd07578 208 SGGSCIIEPDGTIQASIDS-GDGVALGEIDLDRARHRQFPGELVFTARRPEL 258 (258)
T ss_pred eeEEEEECCCCcEeeccCC-CCceEEEEecchHhhhhhcccchhhhhhccCC
Confidence 9999999999999998874 57999999999999988875 78888888764
No 29
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=5e-37 Score=253.11 Aligned_cols=195 Identities=29% Similarity=0.433 Sum_probs=164.9
Q ss_pred CHHHHHHcCcEEeeee-eeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEE
Q 027467 1 MQELAKELGVVMPVSF-FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAI 79 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~-~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~I 79 (223)
|+++|++++++|++|+ +++.++++||++++++|+|++ .+|+|.||++++ .|..++.+|++ +.+|+++++|||++|
T Consensus 77 l~~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~-~~v~~~~~~~ig~~I 152 (280)
T cd07574 77 FSELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDK-LKVFDTDLGKIGILI 152 (280)
T ss_pred HHHHHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCC-ceEEecCCccEEEEE
Confidence 4789999999999995 566778999999999999987 999999998742 23446789985 789999999999999
Q ss_pred eecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeee
Q 027467 80 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFY 159 (223)
Q Consensus 80 C~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~ 159 (223)
|||++||++++.++.+|+|++++|++|+.. ....+|....++||+||++|++.+|++|.... ......+.
T Consensus 153 C~D~~fpe~~r~l~~~ga~ii~~ps~~~~~------~~~~~~~~~~~arA~en~~~vv~an~~G~~~~----~~~~~~~~ 222 (280)
T cd07574 153 CYDSEFPELARALAEAGADLLLVPSCTDTR------AGYWRVRIGAQARALENQCYVVQSGTVGNAPW----SPAVDVNY 222 (280)
T ss_pred ecccccHHHHHHHHHcCCCEEEECCcCCcc------ccHHHHHHHHHHHHHhhCceEEEeCCCCCCCC----cccccccc
Confidence 999999999999999999999999986431 23446777789999999999999999996531 01145789
Q ss_pred eeeEEECCC------CCeeeecCCCCceEEEEEechhhHHhhhhccC--cccccchhH
Q 027467 160 GNSFIAGPT------GEIVAAADDKEEAVLVAQFDLDKLKSKRSSWG--VFRDRRPEL 209 (223)
Q Consensus 160 G~S~iv~p~------G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~--~~~~~r~~~ 209 (223)
|+|+|++|. |+++++++.++|++++++||++.++..|..++ .++++|+||
T Consensus 223 G~S~i~~P~~~~~~~g~~l~~~~~~~e~~~~a~iD~~~~~~~R~~~~~~~~~~~~~~~ 280 (280)
T cd07574 223 GQAAVYTPCDFGFPEDGILAEGEPNTEGWLIADLDLEALRRLREEGSVRNLRDWREDL 280 (280)
T ss_pred ccceeecCCCCCCCCCCeEeecCCCCCceEEEecCHHHHHHHhhcCCccCcccCcccC
Confidence 999999996 88999988778999999999999999999965 467888764
No 30
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=1.6e-36 Score=254.76 Aligned_cols=181 Identities=25% Similarity=0.374 Sum_probs=156.9
Q ss_pred CHHHHHHcCcEEeeeeeeecC-C-ceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeC-CceEEE
Q 027467 1 MQELAKELGVVMPVSFFEEAN-N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTK-FAKIGV 77 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~-~-~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ig~ 77 (223)
|+++|+++++++++|+.++.+ + ++||++++|+|+|+++.+|+|+||+. ....|.+|...+++|+++ +.|+|+
T Consensus 88 l~~~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~~v~~~~~g~kiG~ 162 (333)
T PRK13287 88 FAQACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGIPVCDGPGGSKLAV 162 (333)
T ss_pred HHHHHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCCceEECCCCceEEE
Confidence 467899999999999887653 3 39999999999999999999999742 123568887336888886 569999
Q ss_pred EEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCccee
Q 027467 78 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQIT 157 (223)
Q Consensus 78 ~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~ 157 (223)
+||||.+|||++|.++.+|||++++|++|+. ...++|....++||++|+++++.+|++|... ...
T Consensus 163 ~ICyD~~fPe~~R~~a~~GAeill~~s~~~~-------~~~~~w~~~~~arA~en~~~vv~an~~G~~~--------~~~ 227 (333)
T PRK13287 163 CICHDGMFPEMAREAAYKGANVMIRISGYST-------QVREQWILTNRSNAWQNLMYTASVNLAGYDG--------VFY 227 (333)
T ss_pred EEEecccchHHHHHHHHCCCeEEEECCccCC-------cchhHHHHHHHHHHHhCCcEEEEEeccccCC--------Cee
Confidence 9999999999999999999999999998753 2357888889999999999999999999653 467
Q ss_pred eeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCc
Q 027467 158 FYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGV 201 (223)
Q Consensus 158 ~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~ 201 (223)
|.|.|+|++|+|+++++++.+++++++++||++.++.+|..++.
T Consensus 228 ~~G~S~Iidp~G~vl~~~~~~~~~ii~aeid~~~~~~~R~~~~~ 271 (333)
T PRK13287 228 YFGEGQVCNFDGTTLVQGHRNPWEIVTAEVRPDLADEARLGWGL 271 (333)
T ss_pred eeeeeEEECCCCcEEEeCCCCCCeEEEEEEeHHHHHHHHHhcCc
Confidence 89999999999999999998888999999999999999998875
No 31
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=5.1e-36 Score=243.18 Aligned_cols=184 Identities=43% Similarity=0.790 Sum_probs=166.3
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 80 (223)
|+++|+++++.|++|+++++++++||++++++|+|+++.+|+|.||++ |.|..++.+|+. ..+|+++++|+|++||
T Consensus 68 l~~~a~~~~i~ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~-~~~f~~~~~~ig~~IC 143 (253)
T cd07197 68 LAELAKELGIYIVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDE-FPVFDTPGGKIGLLIC 143 (253)
T ss_pred HHHHHHHhCeEEEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCC-CceEEcCCceEEEEEE
Confidence 468899999999999998888899999999999999999999999987 468889999996 8999999999999999
Q ss_pred ecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeee
Q 027467 81 WDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG 160 (223)
Q Consensus 81 ~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G 160 (223)
+|.+||+.++.+..+|+|++++|+++... ...+|..+.++||+|++++++.||++|... +..+.|
T Consensus 144 ~d~~~~~~~~~~~~~g~dli~~ps~~~~~-------~~~~~~~~~~~~A~e~~~~vv~~n~~G~~~--------~~~~~G 208 (253)
T cd07197 144 YDLRFPELARELALKGADIILVPAAWPTA-------RREHWELLLRARAIENGVYVVAANRVGEEG--------GLEFAG 208 (253)
T ss_pred ecCCCcHHHHHHHHCCCcEEEECCcCCCc-------chHHHHHHHHHHHHHhCCeEEEecCCCCCC--------Cccccc
Confidence 99999999999999999999999996532 156888899999999999999999999653 578999
Q ss_pred eeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccc
Q 027467 161 NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRD 204 (223)
Q Consensus 161 ~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~ 204 (223)
.|+|++|+|+++++.+.+ ++++++++|++.++..|..++...+
T Consensus 209 ~S~i~~p~G~~~~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~~ 251 (253)
T cd07197 209 GSMIVDPDGEVLAEASEE-EGILVAELDLDELREARKRWSYLRD 251 (253)
T ss_pred eeEEECCCCceeeecCCC-CcEEEEEeCHHHHHHHHhhCCcccc
Confidence 999999999999999887 8999999999999999998754433
No 32
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=244.23 Aligned_cols=192 Identities=42% Similarity=0.676 Sum_probs=163.5
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEEEe
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAIC 80 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC 80 (223)
++++|+++.++|++|...... ..||++++++++|+++++|+|+||++. .|.|+.++.+|+....+|+++++|+|++||
T Consensus 72 l~~~a~~~~~~ivg~~~~~~~-~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~~v~~~~~~kig~~IC 149 (274)
T COG0388 72 LAALAEEGGVIIVGGPLPERE-KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGVVVFETDGGKIGLLIC 149 (274)
T ss_pred HHHHHHhCCeEEEEeeeeccc-cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccceeEEeCCceEEEEEE
Confidence 356777566666666543333 789999999999999999999999986 567999999998622599999999999999
Q ss_pred ecCCCchHHHHH-HHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeee
Q 027467 81 WDQWFPEAARAM-VLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFY 159 (223)
Q Consensus 81 ~D~~~pe~~~~~-~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~ 159 (223)
||++|||+++.+ +..||+++++|++|+.. ...++|..+.++||+||+++|+.+|+.|... ....|.
T Consensus 150 ~D~~fPe~~~~~~a~~Gaeii~~p~a~~~~------~~~~~w~~l~~arA~en~~~vv~~n~~g~~~-------~~~~~~ 216 (274)
T COG0388 150 YDLRFPELARRLLALGGAELLLVPAAWPAE------RGLDHWEVLLRARAIENQVYVLAANRAGFDG-------AGLEFC 216 (274)
T ss_pred eeccCHHHHHHHHHhcCCeEEEEcCCCCCc------ccHHHHHHHHHHHhhhcCceEEEecccCCCC-------CccEEe
Confidence 999999988877 77899999999997652 1258999999999999999999999999643 027899
Q ss_pred eeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccch
Q 027467 160 GNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRP 207 (223)
Q Consensus 160 G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~ 207 (223)
|+|+|++|+|++++++..++|+++++++|++.+...|..++.+..++.
T Consensus 217 G~S~i~~p~G~v~~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~~~ 264 (274)
T COG0388 217 GHSAIIDPDGEVLAEAGEEEEGVLLADIDLAELAEVRRKIPVLKDRRR 264 (274)
T ss_pred cceEEECCCccEEeecCCCCCcEEEEEECHHHHHHHHhhCcchhhccc
Confidence 999999999999999988789999999999999999999997765444
No 33
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-37 Score=235.44 Aligned_cols=199 Identities=30% Similarity=0.504 Sum_probs=174.5
Q ss_pred HHHHHHcCcEEeeeee-eecC---CceeEEEEEECCCCceeeeeeccCCCC-----CCCCcccccccCCCCCcceEeeCC
Q 027467 2 QELAKELGVVMPVSFF-EEAN---NAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVFQTKF 72 (223)
Q Consensus 2 ~~~A~~~~i~i~~G~~-~~~~---~~~yNs~~vi~~~G~i~~~y~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~ 72 (223)
+++|++++|++.+|-. ++.+ .+++|+-++||.+|+++..|+|.||+. .+.+.|...-.||+...+.+++|-
T Consensus 83 ~elar~~nIwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~ 162 (295)
T KOG0807|consen 83 RELARSHNIWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPL 162 (295)
T ss_pred HHHHHhcCeeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcc
Confidence 6789999999998754 3332 599999999999999999999999954 445678888899997567799999
Q ss_pred ceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccC
Q 027467 73 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHG 152 (223)
Q Consensus 73 ~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g 152 (223)
||+|+.||||++|||++..+.++||+++..||+.+. ..+..+|..+.|+||+|++||||.+..+|.-.-
T Consensus 163 GklGlaICYDiRFpE~sl~LR~~gA~iLtyPSAFT~------~TG~AHWEiLlRARAietQCYVvaaaQ~G~Hne----- 231 (295)
T KOG0807|consen 163 GKLGLAICYDIRFPELSLKLRKMGAQILTYPSAFTI------KTGEAHWEILLRARAIETQCYVVAAAQVGKHNE----- 231 (295)
T ss_pred cccceeeeeeccCchHHHHHHHcCCcEEeccchhhh------cccHHHHHHHHHHHHhhcceEEEehhhcccccc-----
Confidence 999999999999999999999999999999999643 246899999999999999999999999997431
Q ss_pred CcceeeeeeeEEECCCCCeeeecCCCC-ceEEEEEechhhHHhhhhccCcccccchhHHHHh
Q 027467 153 KSQITFYGNSFIAGPTGEIVAAADDKE-EAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVL 213 (223)
Q Consensus 153 ~~~~~~~G~S~iv~p~G~il~~~~~~~-e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~~~ 213 (223)
.-.-+|+|+|+||=|.+++.+++.. .++++||||+.-++..|...|.++.+|+|+|...
T Consensus 232 --KR~SyGhSMiVDPWGtVva~~se~~~~~l~~AdiDlslld~lr~~mP~~~hRr~dly~~~ 291 (295)
T KOG0807|consen 232 --KRESYGHSMIVDPWGTVVARCSERTGPGLILADIDLSLLDSLRTKMPLFNHRRNDLYTLF 291 (295)
T ss_pred --hhhccCcceEEcchhhhheecCCCCCCceEEEEccHHHHHHHHHhCchhhhcccchhhhh
Confidence 1235899999999999999998643 8999999999999999999999999999999765
No 34
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=2.7e-34 Score=235.58 Aligned_cols=170 Identities=28% Similarity=0.325 Sum_probs=147.7
Q ss_pred CHHHHHHcCcEEeeeeeeecC--CceeEEEEEECCCCceeeeeeccCCCCCCCC---------------cccccccCCCC
Q 027467 1 MQELAKELGVVMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGY---------------QEKFYFNPGDT 63 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~--~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~---------------~e~~~~~~G~~ 63 (223)
|+++|++++++|++|+.++.+ +++||++++|+|+|+++.+|+|+||+++.++ .|..+|.+|++
T Consensus 64 l~~~ak~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~ 143 (270)
T cd07571 64 LARAARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTG 143 (270)
T ss_pred HHHHHHhcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCC
Confidence 467899999999999987765 4899999999999999999999999886553 36678999985
Q ss_pred CcceEeeCC-ceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCC
Q 027467 64 GFKVFQTKF-AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRI 142 (223)
Q Consensus 64 ~~~~~~~~~-~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~ 142 (223)
..+|++++ +|+|++||||.+|||+++.++.+|+|++++|+++... ... ....+|..++++||+||+++|+.||+.
T Consensus 144 -~~vf~~~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps~~~~~--~~~-~~~~~~~~~~~arA~en~~~vv~~n~~ 219 (270)
T cd07571 144 -PQPLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNITNDAWF--GDS-AGPYQHLAMARLRAIETGRPLVRAANT 219 (270)
T ss_pred -CCccccCCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcCccccc--CCC-cchHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 89999999 9999999999999999999999999999999984321 111 234566778899999999999999976
Q ss_pred CccccccccCCcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhh
Q 027467 143 GKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDK 191 (223)
Q Consensus 143 G~~~~~~~~g~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~ 191 (223)
| .|+|+||+|+++++++.++++++++++|++.
T Consensus 220 G-----------------~S~ivdp~G~ii~~~~~~~e~~~~~~i~~~~ 251 (270)
T cd07571 220 G-----------------ISAVIDPDGRIVARLPLFEAGVLVAEVPLRT 251 (270)
T ss_pred e-----------------eeEEECCCCcEEeecCCCcceEEEEEeccCC
Confidence 5 8999999999999999888999999999876
No 35
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=9.5e-34 Score=252.46 Aligned_cols=176 Identities=32% Similarity=0.509 Sum_probs=157.9
Q ss_pred CHHHHHH--cCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEEE
Q 027467 1 MQELAKE--LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVA 78 (223)
Q Consensus 1 l~~~A~~--~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~ 78 (223)
|+++|++ +++.|++|++++.++++||++++|+ +|++++.|+|+||++++.|.|..+|++|+. ..+|+++++|+|++
T Consensus 66 l~~La~~~~~~i~ii~G~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~-~~~~~~~g~rigv~ 143 (540)
T PRK13981 66 LERLAAATAGGPAVLVGHPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYGVFDEKRYFAPGPE-PGVVELKGVRIGVP 143 (540)
T ss_pred HHHHHHhcCCCCEEEEeCcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCCCcCccccccCCCC-ceEEEECCEEEEEE
Confidence 3567777 6999999999888889999999997 899999999999999988999999999985 78999999999999
Q ss_pred EeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceee
Q 027467 79 ICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITF 158 (223)
Q Consensus 79 IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~ 158 (223)
||+|+|||++++.++.+|||++++|++|+.. . ....+|..+.++||+||++|++.+|++|.. ++..|
T Consensus 144 IC~D~~~pe~~r~la~~Gadlil~psa~~~~---~--~~~~~~~~~~~~rA~En~~~vv~aN~vG~~--------~~~~f 210 (540)
T PRK13981 144 ICEDIWNPEPAETLAEAGAELLLVPNASPYH---R--GKPDLREAVLRARVRETGLPLVYLNQVGGQ--------DELVF 210 (540)
T ss_pred EehhhcCCcHHHHHHHCCCcEEEEcCCCccc---C--CcHHHHHHHHHHHHHHhCCeEEEEecccCC--------CceEE
Confidence 9999999999999999999999999986432 1 234677789999999999999999999954 36789
Q ss_pred eeeeEEECCCCCeeeecCCCCceEEEEEechhh
Q 027467 159 YGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDK 191 (223)
Q Consensus 159 ~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~ 191 (223)
.|.|+|++|+|+++++++.++++++++++|++.
T Consensus 211 ~G~S~i~dp~G~il~~~~~~~e~~l~~did~~~ 243 (540)
T PRK13981 211 DGASFVLNADGELAARLPAFEEQIAVVDFDRGE 243 (540)
T ss_pred eCceEEECCCCCEeeecCCCCCcEEEEEEeecC
Confidence 999999999999999999889999999999853
No 36
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=1.2e-31 Score=243.47 Aligned_cols=192 Identities=27% Similarity=0.432 Sum_probs=157.3
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCc---------------
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF--------------- 65 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~--------------- 65 (223)
|+++|+++++.|++|++++.++++||++++|+ +|++++.|+|+||++++.|.|.+||.+|....
T Consensus 81 L~~~a~~~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~ 159 (679)
T PRK02628 81 LVEASADLDPLLVVGAPLRVRHRLYNCAVVIH-RGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLCGQEVPFGT 159 (679)
T ss_pred HHHHHhhcCEEEEEeeEEEECCEEEEEEEEEc-CCEEEEEeccccCCCCCcccccccccCCCCCCCceEeecCeeeccCC
Confidence 45678889999999999887889999999997 89999999999999988899999999998511
Q ss_pred -ceEee---CCceEEEEEeecCCCchH-HHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEc
Q 027467 66 -KVFQT---KFAKIGVAICWDQWFPEA-ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASN 140 (223)
Q Consensus 66 -~~~~~---~~~~ig~~IC~D~~~pe~-~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an 140 (223)
.+|++ +++|||+.||||+||||. .+.++.+|||+|++|++|+.. . .....|..+.+.+|.+++++++.+|
T Consensus 160 ~~vf~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~---~--gk~~~r~~l~~~~aar~~~~~v~~n 234 (679)
T PRK02628 160 DLLFEAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNIT---V--GKADYRRLLVASQSARCLAAYVYAA 234 (679)
T ss_pred ceeEEecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcc---c--CcHHHHHHHHHHHHHHhCcEEEEEe
Confidence 24655 689999999999999998 588999999999999997542 1 1124444677788888866666665
Q ss_pred -CCCccccccccCCcceeeeeeeEEECCCCCeeeecCCC--CceEEEEEechhhHHhhhhccCcccccc
Q 027467 141 -RIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDK--EEAVLVAQFDLDKLKSKRSSWGVFRDRR 206 (223)
Q Consensus 141 -~~G~~~~~~~~g~~~~~~~G~S~iv~p~G~il~~~~~~--~e~~l~~~i~l~~~~~~r~~~~~~~~~r 206 (223)
..|.. +++..|.|+|+|++ +|+++++++.+ ++++++++||++.++..|...+++.+++
T Consensus 235 ~~~G~~-------~~~~vf~G~S~I~~-~G~vla~a~~f~~~e~l~~adiDl~~v~~~R~~~~~~~d~~ 295 (679)
T PRK02628 235 AGVGES-------TTDLAWDGQTLIYE-NGELLAESERFPREEQLIVADVDLERLRQERLRNGSFDDNA 295 (679)
T ss_pred cccccC-------CCCeEEeCeEEEEc-CCeEEEecCCCCCCCcEEEEEEcHHHHHHHHhhcCCcccch
Confidence 46532 23588999999998 99999999844 3569999999999999998888887766
No 37
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.97 E-value=4.6e-32 Score=218.04 Aligned_cols=203 Identities=34% Similarity=0.550 Sum_probs=178.3
Q ss_pred CHHHHHHcCcEEeeeeeeec--CCceeEEEEEECCCCceeeeeeccCCCCC--CC---CcccccccCCCCCcceEeeCCc
Q 027467 1 MQELAKELGVVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDG--PG---YQEKFYFNPGDTGFKVFQTKFA 73 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~--~~~~yNs~~vi~~~G~i~~~y~K~~l~~~--~~---~~e~~~~~~G~~~~~~~~~~~~ 73 (223)
++++|++++|+++.|+++.. +++.||++.+++++|+.+..|||.||+.. +. |.|...|.+|.. +.++++..+
T Consensus 86 ls~va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~-f~~~~~~~g 164 (298)
T KOG0806|consen 86 LSEVAERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQ-FTVVDTSYG 164 (298)
T ss_pred hHHHHhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcC-CCcccCCCC
Confidence 57899999999999987654 47999999999999999999999999864 22 678888999996 889999999
Q ss_pred eEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCC
Q 027467 74 KIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGK 153 (223)
Q Consensus 74 ~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~ 153 (223)
|||+.||||++|+|+++.+++.||++|+.|++|... .......+|..++++||-.|..+|+.++..+...
T Consensus 165 kfGi~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~---~l~~~~~hw~~~~~~~a~~n~~~v~~~s~~~~~s------- 234 (298)
T KOG0806|consen 165 KFGIFICFDIRFYDPAMILVKDGADLIVYPTAWNNE---LLSAVPLHWALLMRARANDNAANVHAPSPARTGS------- 234 (298)
T ss_pred ceEEEEEecccccchHHHHHHcCCcEEEecchHhhh---cccccchHHHHHHhCCcccceeeeeccCcCcCCc-------
Confidence 999999999999999999999999999999999732 1124568999999999999999999999876432
Q ss_pred cceeeee-eeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHHHhHh
Q 027467 154 SQITFYG-NSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLT 215 (223)
Q Consensus 154 ~~~~~~G-~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~~~~~ 215 (223)
..+...| +|.+++|.|.+|+.....+| +..+++|+..+...|+.+++++++|+++|..+..
T Consensus 235 ~~y~~~gshs~~~~p~gkvl~a~~~~~e-~~~a~~d~~~~~~~rq~~~~~~~r~~d~y~~~~~ 296 (298)
T KOG0806|consen 235 GIYAPRGSHSIMVNPTGKVLAAAVEKEE-IIYADVDPSAIASRRQGLPVFRQRRLDLYSLDLF 296 (298)
T ss_pred eeeecCCcceeecCCcceEeeeccCCCc-cccccCCHHHHHHHhcccchhhccchhhhhhhcc
Confidence 3567778 99999999999999987645 9999999999999999999999999999997754
No 38
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=99.97 E-value=9.7e-30 Score=230.87 Aligned_cols=185 Identities=19% Similarity=0.217 Sum_probs=147.0
Q ss_pred HHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCC---------------------
Q 027467 6 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG--------------------- 64 (223)
Q Consensus 6 ~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~--------------------- 64 (223)
+++++.|++|+++..++++||+++++. +|++++.|+|+||++++.|.|.+||.+|...
T Consensus 77 ~~~~i~vvvG~p~~~~~~lYN~a~vi~-~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~v 155 (700)
T PLN02339 77 LTDGILCDIGMPVIHGGVRYNCRVFCL-NRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSV 155 (700)
T ss_pred ccCCeEEEEeeeEEECCeEEEEEEEEe-CCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCcee
Confidence 467999999999887889999999995 8999999999999999889999999998521
Q ss_pred ---cceEeeCCceEEEEEeecCCCchHHHH-HHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEc
Q 027467 65 ---FKVFQTKFAKIGVAICWDQWFPEAARA-MVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASN 140 (223)
Q Consensus 65 ---~~~~~~~~~~ig~~IC~D~~~pe~~~~-~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an 140 (223)
..+|++++++||+.||||+|||+..+. ++.+|||+|++|++++ +... .....+..+....+..+++| +.||
T Consensus 156 pfg~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~---~~~g-K~~~R~rai~n~sa~~~~~y-vyaN 230 (700)
T PLN02339 156 PFGDGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSH---HQLR-KLNTRLDLIRSATHKCGGVY-LYAN 230 (700)
T ss_pred ccCcceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCCh---hhcC-CHHHHHHHHHHHHHHhCCcE-EEEc
Confidence 124456678999999999999999884 9999999999998832 2111 11233444444555555667 5899
Q ss_pred CCCccccccccCCcceeeeeeeEEECCCCCeeeecCCC---CceEEEEEechhhHHhhhhccCcccc
Q 027467 141 RIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDK---EEAVLVAQFDLDKLKSKRSSWGVFRD 204 (223)
Q Consensus 141 ~~G~~~~~~~~g~~~~~~~G~S~iv~p~G~il~~~~~~---~e~~l~~~i~l~~~~~~r~~~~~~~~ 204 (223)
++|... +...|.|+|+|. |+|+++++++.+ ++.+++++||++.++..|...+.+++
T Consensus 231 ~~Ge~~-------~~lvf~G~S~I~-~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~~~~~~~ 289 (700)
T PLN02339 231 QRGCDG-------GRLYYDGCACIV-VNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGSISSFRE 289 (700)
T ss_pred CCccCC-------CceEEcCceEEe-CCCcEeEecCCcccCCceEEEEEEehHHhhhHhhcCCchhh
Confidence 998643 257899999996 799999999875 46799999999999888887776644
No 39
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.97 E-value=4.8e-30 Score=227.25 Aligned_cols=169 Identities=25% Similarity=0.260 Sum_probs=142.2
Q ss_pred CHHHHHHcCcEEeeeeeeecC---C-ceeEEEEEECCCCceeeeeeccCCCCCCCCcc---------------cccccCC
Q 027467 1 MQELAKELGVVMPVSFFEEAN---N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNPG 61 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~---~-~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e---------------~~~~~~G 61 (223)
++++|+++++.|++|..+.++ + ++||++++++| |+++.+|+|+||.|+++|.. ...|.+|
T Consensus 283 l~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G 361 (505)
T PRK00302 283 LDDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRG 361 (505)
T ss_pred HHHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCC
Confidence 357899999999999886542 3 69999999998 88999999999999776421 1257899
Q ss_pred CCCcceEeeCCceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcC
Q 027467 62 DTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNR 141 (223)
Q Consensus 62 ~~~~~~~~~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~ 141 (223)
+...++++++++|+|++||||..|||+.|.++++|+|++++|++... +... ....+|..+.++||+||+++++++|+
T Consensus 362 ~~~~~v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~snd~W--f~~~-~~~~qh~~~~~~RAiEng~~vvra~n 438 (505)
T PRK00302 362 PYVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNISNDAW--FGDS-IGPYQHFQMARMRALELGRPLIRATN 438 (505)
T ss_pred CCCCCCcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEccchhh--cCCC-CchHHHHHHHHHHHHHhCCceEEecC
Confidence 84478999999999999999999999999999999999999998321 1111 23456778899999999999999987
Q ss_pred CCccccccccCCcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechh
Q 027467 142 IGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLD 190 (223)
Q Consensus 142 ~G~~~~~~~~g~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~ 190 (223)
.| .|+++||+|+++++++.++++++++++++.
T Consensus 439 ~G-----------------~Saiidp~G~i~~~~~~~~~~~l~~~i~~~ 470 (505)
T PRK00302 439 TG-----------------ITAVIDPLGRIIAQLPQFTEGVLDGTVPPT 470 (505)
T ss_pred ce-----------------eeEEECCCCCEeeecCCCceeEEEEEeccC
Confidence 65 999999999999999988999999999975
No 40
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.97 E-value=8.2e-30 Score=198.88 Aligned_cols=214 Identities=30% Similarity=0.490 Sum_probs=189.4
Q ss_pred CHHHHHHcCcEEeeeeeeec---CCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEeeCCceEEE
Q 027467 1 MQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGV 77 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~---~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~ 77 (223)
++++|+++++.|+....|++ ++-++|++++|+.+|.+++++||.|+|..+.|.|..+|-.|+.+-+||++.++||++
T Consensus 153 lqklakkhdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgriav 232 (387)
T KOG0808|consen 153 LQKLAKKHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGRIAV 232 (387)
T ss_pred HHHHHhhCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecceEEE
Confidence 58999999999999998875 568999999999999999999999999999999999999999778999999999999
Q ss_pred EEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCcccccccc----C-
Q 027467 78 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEH----G- 152 (223)
Q Consensus 78 ~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~----g- 152 (223)
-|||--.+|--|-.+...||++|++||+.-.. .+...|...++..|+.|.+++...|++|.+-.+.+. |
T Consensus 233 nicygrhhplnwlmy~lngaeiifnpsatvga------lseplwpiearnaaianh~ft~~inrvgtevfpneftsgdgk 306 (387)
T KOG0808|consen 233 NICYGRHHPLNWLMYGLNGAEIIFNPSATVGA------LSEPLWPIEARNAAIANHYFTGSINRVGTEVFPNEFTSGDGK 306 (387)
T ss_pred EeeccCCCchhhhhhhccCceEEECCcccccc------ccCccCchhhhhhhhhhceEEEeecccccccCCCcccCCCCC
Confidence 99999999999999999999999999994221 234567788899999999999999999986554321 1
Q ss_pred ---CcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcccccchhHHHHhHhcCCCC
Q 027467 153 ---KSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVFRDRRPELYKVLLTLDGSN 220 (223)
Q Consensus 153 ---~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~~~~r~~~y~~~~~~~~~~ 220 (223)
++=-.|+|+|.+..|++...-.+....++++++++||..+++....|++....|.|+|..+.++-.+|
T Consensus 307 pah~dfghfygssy~aapd~srtp~lsr~rdgllia~ldlnlcrq~kd~wgfrmt~ryemya~~lae~~kp 377 (387)
T KOG0808|consen 307 PAHNDFGHFYGSSYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYKDKWGFRMTARYEMYADLLAEYIKP 377 (387)
T ss_pred cccccccccccceeeecCCCCCCccccccccceEEeecchHHHHHhhhhhcceehhhHHHHHHHHHHHhCC
Confidence 12246999999999999999999888999999999999999999999988999999999998876554
No 41
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.97 E-value=7.6e-30 Score=197.58 Aligned_cols=205 Identities=25% Similarity=0.432 Sum_probs=179.7
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCC-CCcceEeeCCceEEEEE
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGD-TGFKVFQTKFAKIGVAI 79 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~-~~~~~~~~~~~~ig~~I 79 (223)
|..+|++++++++.|.+|+++-.+|.++++|+|+|..++++||..++. -|+..+..|+ ..++|++++-+|||.+|
T Consensus 103 l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTa----lERciWGqGDGSTiPV~dT~iGKIG~AI 178 (337)
T KOG0805|consen 103 LAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTA----LERCIWGQGDGSTIPVYDTPIGKIGAAI 178 (337)
T ss_pred HHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCccccccccccccch----hhheeeccCCCcccceeecccchhceee
Confidence 467899999999999999999999999999999999999999997665 4776665554 24899999999999999
Q ss_pred eecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccc-cc----------
Q 027467 80 CWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEI-IE---------- 148 (223)
Q Consensus 80 C~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~-~~---------- 148 (223)
|||.+.|-+...|..+|+++.+.|++ +....|+..++..|.|-+|+|+.+++.-... .+
T Consensus 179 CWEN~MPl~R~alY~KgieIycAPT~----------D~r~~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~~peyl~~~~ 248 (337)
T KOG0805|consen 179 CWENRMPLYRTALYAKGIEIYCAPTA----------DGRKEWQSSMLHIALEGGCFVLSACQFCKRKDFPDHPDYLFTDW 248 (337)
T ss_pred ecccccHHHHHHHHhcCcEEEeccCC----------CCcHHHHHhhhheeecCceEEEEhhhhcccccCCCCchhhcccc
Confidence 99999999988999999999999998 5678999999999999999999999754322 11
Q ss_pred -cccCCcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhhHHhhhhccCcc-cccchhHHHHhHhcCCC
Q 027467 149 -TEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKLKSKRSSWGVF-RDRRPELYKVLLTLDGS 219 (223)
Q Consensus 149 -~~~g~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~~~~r~~~~~~-~~~r~~~y~~~~~~~~~ 219 (223)
...+.+.....|+|.|++|.|.+|+......|+++++|+|++.+.++|-.++.. ++.|||+|.+-++++..
T Consensus 249 ~~~k~pD~vv~~GGSviI~PlG~VlagP~~~~EgL~tadldl~dIA~ak~d~DvVGHYsRpDVFqLtVnE~~~ 321 (337)
T KOG0805|consen 249 YDDKEPDSVVSQGGSVIISPLGQVLAGPNFESEGLITADLDLGDIARAKLDFDVVGHYSRPDVFQLTVNEHPR 321 (337)
T ss_pred hhccCCCcceecCCcEEEccccceecCCCcCccceEEEeccchhhhhhccccccccccCCCceEEEEeccCCC
Confidence 234567889999999999999999999878899999999999999999888766 99999999988887654
No 42
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=99.96 E-value=2.1e-29 Score=208.48 Aligned_cols=158 Identities=25% Similarity=0.338 Sum_probs=116.9
Q ss_pred CHHHHHHcCcEEeeeeeeecC---CceeEEEEEECCCCceeeeeeccCCCCCCC---Cccc-cccc------CCCCCc-c
Q 027467 1 MQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG---YQEK-FYFN------PGDTGF-K 66 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~---~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~---~~e~-~~~~------~G~~~~-~ 66 (223)
|+++|++++++|++|++++.+ +++||++++|+|+|+++++|+|+||++... +.|. .++. +|.+.. .
T Consensus 74 l~~lAk~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~~ 153 (295)
T cd07566 74 AREVAKKFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPFAKDDDFDG 153 (295)
T ss_pred HHHHHHhcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCccccccccccccccccc
Confidence 367899999999999988754 489999999999999999999999986421 1122 2232 665422 2
Q ss_pred eEeeCCceEEEEEeecCC---C--c----hHHHHHHHcCCcEEEeeccCCCCCCC---------CCCCcHHHHHHHH-HH
Q 027467 67 VFQTKFAKIGVAICWDQW---F--P----EAARAMVLQGAEILFYPTAIGSEPQD---------DGLDSRDHWRRVM-QG 127 (223)
Q Consensus 67 ~~~~~~~~ig~~IC~D~~---~--p----e~~~~~~~~gadlii~ps~~~~~~~~---------~~~~~~~~~~~~~-~~ 127 (223)
++.+.++|||++||||++ | | |++|.++++|||+|++|++|+....+ .|......|...+ ++
T Consensus 154 ~~~~~~~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~~~~ra~~~ 233 (295)
T cd07566 154 GSVDVTLKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSYWLQRFEPL 233 (295)
T ss_pred cccCCcceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHHHHHhhccc
Confidence 233458899999999996 7 5 99999999999999999999753221 1100113344333 34
Q ss_pred HH-hhcCceEEEEcCCCccccccccCCcceeeeeeeEEEC
Q 027467 128 HA-GANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAG 166 (223)
Q Consensus 128 rA-~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~S~iv~ 166 (223)
|| .||++||+.||++|.+. +..|.|+|+|+.
T Consensus 234 ~a~~eN~~~vv~~Nr~G~~~--------~~~f~G~S~i~~ 265 (295)
T cd07566 234 RAEPLEGTQVVFCNRIGTEN--------DTLYAGSSAVIG 265 (295)
T ss_pred ccCCCCceEEEEEeccCccC--------CceecCccceee
Confidence 44 59999999999999664 678999999984
No 43
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.96 E-value=6.5e-29 Score=213.68 Aligned_cols=150 Identities=24% Similarity=0.264 Sum_probs=126.8
Q ss_pred CHHHHHHcCcEEeeeeeeecCC---ceeEEEEEECCCCceeeeeeccCCCCCCCCcc----------------cccccCC
Q 027467 1 MQELAKELGVVMPVSFFEEANN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE----------------KFYFNPG 61 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~---~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e----------------~~~~~~G 61 (223)
++++|+++++.|++|.++.+++ ++||++++++|+|+++.+|+|+||.|++++.. ...|++|
T Consensus 223 l~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G 302 (391)
T TIGR00546 223 LKLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRG 302 (391)
T ss_pred HHHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCC
Confidence 3578999999999998865443 79999999999999999999999998776422 1367889
Q ss_pred CCCcceEeeCCceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcC
Q 027467 62 DTGFKVFQTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNR 141 (223)
Q Consensus 62 ~~~~~~~~~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~ 141 (223)
++ +.+++++++|+|++||||..|||+.|.++++|+|++++|++.+. ........+|..+.++||+||++++++||+
T Consensus 303 ~~-~~~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~snd~w---f~~s~~~~qh~~~~~~RAiEn~~~vvra~n 378 (391)
T TIGR00546 303 PG-PQVLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLTNDAW---FGDSSGPWQHFALARFRAIENGRPLVRATN 378 (391)
T ss_pred CC-CCCCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEecchhh---cCCCCChHHHHHHHHHHHHHhCCcEEEecC
Confidence 85 88999999999999999999999999999999999999998421 111123567778899999999999999998
Q ss_pred CCccccccccCCcceeeeeeeEEECCCCCe
Q 027467 142 IGKEIIETEHGKSQITFYGNSFIAGPTGEI 171 (223)
Q Consensus 142 ~G~~~~~~~~g~~~~~~~G~S~iv~p~G~i 171 (223)
.| .|+++||+|++
T Consensus 379 ~G-----------------~S~vidp~G~i 391 (391)
T TIGR00546 379 TG-----------------ISAVIDPRGRT 391 (391)
T ss_pred Cc-----------------eeEEECCCCCC
Confidence 76 99999999985
No 44
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.6e-24 Score=190.43 Aligned_cols=170 Identities=26% Similarity=0.256 Sum_probs=137.7
Q ss_pred HHHHHHcCcEEeeeeeee--cCC--ceeEEEEEECCCCceeeeeeccCCCCCCCCccc---------------ccccCCC
Q 027467 2 QELAKELGVVMPVSFFEE--ANN--AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEK---------------FYFNPGD 62 (223)
Q Consensus 2 ~~~A~~~~i~i~~G~~~~--~~~--~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~---------------~~~~~G~ 62 (223)
.+.+++.++.+++|..+. .++ .+|||+++++++|+++.+|+|+||.|++||..- ..|.+|.
T Consensus 294 ~~~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f~~G~ 373 (518)
T COG0815 294 AEALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDFSRGP 373 (518)
T ss_pred HHHHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccccCCC
Confidence 355677889999994332 233 489999999999999999999999998876422 1345677
Q ss_pred CCcceEeeCC-ceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcC
Q 027467 63 TGFKVFQTKF-AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNR 141 (223)
Q Consensus 63 ~~~~~~~~~~-~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~ 141 (223)
. ..++.+++ .|++++||||..|||..|....+|+|+++++||.... .......++..+.++||+|++.+++++++
T Consensus 374 ~-~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SNDAWf---~~s~~p~QH~~~a~~RAiE~grp~iRAtN 449 (518)
T COG0815 374 G-PQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWF---GGSWGPYQHFQQARVRAVELGRPLVRATN 449 (518)
T ss_pred C-CcceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEccccccc---CCCcchHHHHHHHHHHHHhcCCcEEEEcC
Confidence 5 56666655 5699999999999999999999999999999994321 11234566677889999999999999988
Q ss_pred CCccccccccCCcceeeeeeeEEECCCCCeeeecCCCCceEEEEEechhhH
Q 027467 142 IGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDKEEAVLVAQFDLDKL 192 (223)
Q Consensus 142 ~G~~~~~~~~g~~~~~~~G~S~iv~p~G~il~~~~~~~e~~l~~~i~l~~~ 192 (223)
.| .|.++||+|++++.++.++.+++.+++.+...
T Consensus 450 tG-----------------iSavIdp~Gri~~~l~~~~~~~l~~~v~~~~~ 483 (518)
T COG0815 450 TG-----------------ISAVIDPRGRILAQLPYFTRGVLDATVPLKTG 483 (518)
T ss_pred Cc-----------------ceEEECCCCCEEeecCCCCcceeeeeecccCC
Confidence 77 89999999999999999999999999987653
No 45
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.90 E-value=8e-24 Score=164.18 Aligned_cols=105 Identities=45% Similarity=0.727 Sum_probs=95.3
Q ss_pred CHHHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCc-ccccccCCCCCcceEeeC-----Cce
Q 027467 1 MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-EKFYFNPGDTGFKVFQTK-----FAK 74 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~-e~~~~~~G~~~~~~~~~~-----~~~ 74 (223)
|+++|+++++++++|+++++++++||++++|+|+|+++++|+|+||+|+++|. |+.++.+|.....+++++ ++|
T Consensus 76 l~~~a~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~g~~ 155 (186)
T PF00795_consen 76 LAELAKENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFPVFETPVFDFGGGR 155 (186)
T ss_dssp HHHHHHHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESEEEEETETEETTEE
T ss_pred HHHHHHhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeeccceeeeeecceeeeccce
Confidence 46789999999999999999999999999999999999999999999999988 889999985445666664 799
Q ss_pred EEEEEeecCCCchHHHHHHHcCCcEEEeecc
Q 027467 75 IGVAICWDQWFPEAARAMVLQGAEILFYPTA 105 (223)
Q Consensus 75 ig~~IC~D~~~pe~~~~~~~~gadlii~ps~ 105 (223)
+|++||||.+||++++.++++|||++++||+
T Consensus 156 ig~~ICyd~~fp~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 156 IGVLICYDLRFPELVRELAKQGADILINPSA 186 (186)
T ss_dssp EEEEEGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred EEEEEEcccCChHHHHHHHHCCCCEEEeCCC
Confidence 9999999999999999999999999999985
No 46
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.90 E-value=4.2e-23 Score=178.14 Aligned_cols=135 Identities=15% Similarity=0.061 Sum_probs=111.4
Q ss_pred cCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCC----------------cccccccCCCCCcceEeeC
Q 027467 8 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY----------------QEKFYFNPGDTGFKVFQTK 71 (223)
Q Consensus 8 ~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~----------------~e~~~~~~G~~~~~~~~~~ 71 (223)
.++.|++|.++.+++++|||++++++ |+ +..|+|+||.|++++ .|...|++|++ ..+++++
T Consensus 263 ~~~~ii~G~~~~~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~-~~~~~~~ 339 (418)
T PRK12291 263 HKITIITGALRVEDGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASK-FSDFTLD 339 (418)
T ss_pred cCCcEEEeeeeccCCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCC-CcceeeC
Confidence 47899999987766789999999974 87 789999999988753 34457899975 7899999
Q ss_pred CceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCcccccccc
Q 027467 72 FAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEH 151 (223)
Q Consensus 72 ~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~ 151 (223)
+.|+|++||||..|||+.+ +|+|+++++++++.. .. .....+|..++++||+|+|+|++++++.|
T Consensus 340 g~~ig~lICYE~~Fpel~r----~ga~~Lv~iSNdaWf--g~-s~~p~~~~~~~r~RAiE~g~pvvratNtG-------- 404 (418)
T PRK12291 340 GVKFRNAICYEATSEELYE----GNPKIVIAISNNAWF--VP-SIEPTLQKLLLKYYARKYGKTIYHSANGS-------- 404 (418)
T ss_pred CeEEEEEEeeeecchHhhc----cCCCEEEEecccccC--CC-ChhHHHHHHHHHHHHHHhCCcEEEEcCCc--------
Confidence 9999999999999999987 799999999984321 11 12345777888999999999999998876
Q ss_pred CCcceeeeeeeEEECCCC
Q 027467 152 GKSQITFYGNSFIAGPTG 169 (223)
Q Consensus 152 g~~~~~~~G~S~iv~p~G 169 (223)
.|.++||+-
T Consensus 405 ---------iSavIdp~~ 413 (418)
T PRK12291 405 ---------PSYIITPKL 413 (418)
T ss_pred ---------eeEEECcch
Confidence 899999863
No 47
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.84 E-value=7.6e-20 Score=156.02 Aligned_cols=133 Identities=17% Similarity=0.084 Sum_probs=103.9
Q ss_pred HHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCc-------ccccccCCCCCcceEeeCCceE
Q 027467 3 ELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-------EKFYFNPGDTGFKVFQTKFAKI 75 (223)
Q Consensus 3 ~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~-------e~~~~~~G~~~~~~~~~~~~~i 75 (223)
+.++++++.|++|..+++++++||++++++++|.. ..|+|+||.|+++|. |..++.+|....+++++++.|+
T Consensus 246 ~~l~~~~i~II~G~~~~~~~~~yNsa~v~~~~G~~-~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rv 324 (388)
T PRK13825 246 ESLRGSDVTVIAGAAVVDPGGYDNVLVAISAGGGR-ILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRA 324 (388)
T ss_pred HHHHhCCCeEEEEeeecCCCCceEEEEEEeCCCCe-eeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEE
Confidence 45688999999999887788899999999998864 599999998876532 5556777742246899999999
Q ss_pred EEEEeecCCC--chHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcC
Q 027467 76 GVAICWDQWF--PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNR 141 (223)
Q Consensus 76 g~~IC~D~~~--pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~ 141 (223)
|++||||..| |+..+ ..+|+|++++|++... ........+...+.+.||+|++.+++++.+
T Consensus 325 g~lICYE~~F~~pel~~--~~~GadlLv~~SNd~W---f~~s~~p~~q~~~~~~rA~e~g~plvrA~N 387 (388)
T PRK13825 325 APLICYEQLLVWPVLQS--MLHSPDVIVAVGNGWW---TKGTSIVAIQRASAEAWARLFGVPLVRAFN 387 (388)
T ss_pred EEEEeeeecCcHHHHHh--hccCCCEEEEecCchh---cCCCcHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 9999999998 56533 3689999999999422 111122456668899999999999998865
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=99.44 E-value=1.8e-13 Score=116.26 Aligned_cols=178 Identities=21% Similarity=0.292 Sum_probs=133.0
Q ss_pred cCcEEeeeeeeecCCceeEEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCC-----------------------
Q 027467 8 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG----------------------- 64 (223)
Q Consensus 8 ~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~----------------------- 64 (223)
.++.+.+|+|..+++-.||+.+++- +|+|+....|+-|-+.+.|.|.+||++-+..
T Consensus 80 ~~il~diGmPv~hr~~ryNCrv~~~-n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q~tVPf 158 (706)
T KOG2303|consen 80 QDILCDIGMPVMHRNVRYNCRVLFL-NRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQETVPF 158 (706)
T ss_pred CCeeEecCCchhhhhhhhccceeec-CCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCCeeecc
Confidence 3678889999999999999999995 9999999999999999999999999876531
Q ss_pred -cceEeeCCceEEEEEeecCCCchH-HHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCC
Q 027467 65 -FKVFQTKFAKIGVAICWDQWFPEA-ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRI 142 (223)
Q Consensus 65 -~~~~~~~~~~ig~~IC~D~~~pe~-~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~ 142 (223)
-.++.+..-.||.-||.|+|.|.. --.|+..|++++++.|.. +....-......+........|-..+.+|.-
T Consensus 159 Gdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGS-----hh~LrK~~~r~~li~~at~k~GGvYlyaNqr 233 (706)
T KOG2303|consen 159 GDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGS-----HHELRKLNTRVDLILNATSKCGGVYLYANQR 233 (706)
T ss_pred cceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCcc-----HHHHhhhhhhhHHHhcchhhcceEEEeeccC
Confidence 013333344689999999999864 446788999999997751 0000000111112233334455555689999
Q ss_pred CccccccccCCcceeeeeeeEEECCCCCeeeecCCC---CceEEEEEechhhHHhhhhcc
Q 027467 143 GKEIIETEHGKSQITFYGNSFIAGPTGEIVAAADDK---EEAVLVAQFDLDKLKSKRSSW 199 (223)
Q Consensus 143 G~~~~~~~~g~~~~~~~G~S~iv~p~G~il~~~~~~---~e~~l~~~i~l~~~~~~r~~~ 199 (223)
|..+ +.+.|+|+|+|+ -+|.++|+...| .-.++.+.+|+++++..|...
T Consensus 234 GCDG-------~RlYydGca~Ia-~NG~vlAqg~QFsl~DveVv~atvDle~vrsyR~~~ 285 (706)
T KOG2303|consen 234 GCDG-------DRLYYDGCAMIA-MNGSVLAQGSQFSLDDVEVVTATVDLEDVRSYRASI 285 (706)
T ss_pred CCCC-------ceeEecchhhee-ecceeeeecccccccceEEEEEEecHHHHHHHHhhh
Confidence 8765 478999999998 689999998754 457899999999999988654
No 49
>PLN02798 nitrilase
Probab=85.22 E-value=6.9 Score=32.18 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=43.4
Q ss_pred HHHHHHHcCCcEEEeeccCCCCCCCCC--C----CcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeeee
Q 027467 88 AARAMVLQGAEILFYPTAIGSEPQDDG--L----DSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGN 161 (223)
Q Consensus 88 ~~~~~~~~gadlii~ps~~~~~~~~~~--~----~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~ 161 (223)
+.+.++.+|+|||+.|=.+....+... + ...+.+....+..|.+++++++.-...-... +.-.++-.
T Consensus 34 ~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~-------~~~~~yNs 106 (286)
T PLN02798 34 LAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGP-------DDSHLYNT 106 (286)
T ss_pred HHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEEEEeeeEcccC-------CCCceEEE
Confidence 355566789999999986432111110 0 0112234445667888998876321110000 01234557
Q ss_pred eEEECCCCCeee
Q 027467 162 SFIAGPTGEIVA 173 (223)
Q Consensus 162 S~iv~p~G~il~ 173 (223)
+.+++|+|++++
T Consensus 107 ~~vi~~~G~i~~ 118 (286)
T PLN02798 107 HVLIDDSGEIRS 118 (286)
T ss_pred EEEECCCCCEEE
Confidence 788899999875
No 50
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=84.47 E-value=14 Score=29.74 Aligned_cols=77 Identities=10% Similarity=-0.029 Sum_probs=49.5
Q ss_pred CcceEeeCCceEEEEEeecCCC-----------------------------chH---HHHHHHcCCcEEEeeccCCCCCC
Q 027467 64 GFKVFQTKFAKIGVAICWDQWF-----------------------------PEA---ARAMVLQGAEILFYPTAIGSEPQ 111 (223)
Q Consensus 64 ~~~~~~~~~~~ig~~IC~D~~~-----------------------------pe~---~~~~~~~gadlii~ps~~~~~~~ 111 (223)
.+.++++++.|||++-+.+... ..+ .+.+ ++++|++|+...|+.. +
T Consensus 120 ~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-r~~~D~vIv~~HwG~e-~ 197 (250)
T PF09587_consen 120 RPAIIEVNGVKIAFLGYTDGENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREA-RKKADVVIVSLHWGIE-Y 197 (250)
T ss_pred CeEEEEECCEEEEEEEEEcCCCCCccccccccccccccccccccccccchHHHHHHHHHHH-hcCCCEEEEEeccCCC-C
Confidence 3678899999999998776641 112 2223 3689999999999743 2
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCcc
Q 027467 112 DDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKE 145 (223)
Q Consensus 112 ~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~ 145 (223)
... ...++.......++.|+=+|........
T Consensus 198 ~~~---p~~~q~~~a~~lidaGaDiIiG~HpHv~ 228 (250)
T PF09587_consen 198 ENY---PTPEQRELARALIDAGADIIIGHHPHVI 228 (250)
T ss_pred CCC---CCHHHHHHHHHHHHcCCCEEEeCCCCcc
Confidence 211 2333333444567788888888766543
No 51
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=83.37 E-value=13 Score=29.72 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=44.0
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCCCCC-CC-----CcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeee
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEPQDD-GL-----DSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYG 160 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~~~~-~~-----~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G 160 (223)
++.+.++++|+|+++.|=.+....... .. .....+....+..|.+++++++.-... .. ...++-
T Consensus 23 ~~i~~a~~~ga~lvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~-~~---------~~~~yN 92 (254)
T cd07576 23 EAAARAAAAGADLLVFPELFLTGYNIGDAVARLAEPADGPALQALRAIARRHGIAIVVGYPE-RA---------GGAVYN 92 (254)
T ss_pred HHHHHHHHcCCCEEEccCccccCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEEEeccc-cC---------CCceEE
Confidence 456667788999999998764321110 00 011223344556678888887654211 00 112344
Q ss_pred eeEEECCCCCeeee
Q 027467 161 NSFIAGPTGEIVAA 174 (223)
Q Consensus 161 ~S~iv~p~G~il~~ 174 (223)
...+++|+|+++..
T Consensus 93 s~~~i~~~G~i~~~ 106 (254)
T cd07576 93 AAVLIDEDGTVLAN 106 (254)
T ss_pred EEEEECCCCCEeeE
Confidence 67788899986543
No 52
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=81.82 E-value=11 Score=30.17 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=45.6
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCCCCCCC-------CcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeee
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEPQDDGL-------DSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFY 159 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~~~~~~-------~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~ 159 (223)
++.+.++++|+|+|+.|=.+......... .-.+.+....+..|.+++++++.-.. -... +..+.
T Consensus 21 ~~i~~a~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~--------~~~~y 91 (255)
T cd07581 21 RLLAEAAAAGADLVVFPEYTMARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVAGMF-EPAG--------DGRVY 91 (255)
T ss_pred HHHHHHHHcCCCEEECcchhcCCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEEEee-eeCC--------CCcEE
Confidence 45666778999999998875332111000 00123445556678889988875322 1110 11345
Q ss_pred eeeEEECCCCCeeee
Q 027467 160 GNSFIAGPTGEIVAA 174 (223)
Q Consensus 160 G~S~iv~p~G~il~~ 174 (223)
-.+.+++|+|.++..
T Consensus 92 Ns~~~i~~~G~i~~~ 106 (255)
T cd07581 92 NTLVVVGPDGEIIAV 106 (255)
T ss_pred EeEEEECCCCcEEEE
Confidence 577788899987654
No 53
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=81.36 E-value=8.8 Score=30.75 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=42.6
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCCCCCCC-----CcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeeee
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEPQDDGL-----DSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGN 161 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~~~~~~-----~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~ 161 (223)
++.+.++.+|+|+|+.|=.+......... .....+....+..|.+++++++.-...-.. +..+.-.
T Consensus 23 ~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~---------~~~~yNs 93 (253)
T cd07583 23 SLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVAGSVAEKE---------GGKLYNT 93 (253)
T ss_pred HHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEeceEEecC---------CCcEEEE
Confidence 34555667899999999864321110000 001223344556777888888732210000 1134456
Q ss_pred eEEECCCCCeee
Q 027467 162 SFIAGPTGEIVA 173 (223)
Q Consensus 162 S~iv~p~G~il~ 173 (223)
+.+++|+|+++.
T Consensus 94 ~~~i~~~G~i~~ 105 (253)
T cd07583 94 AYVIDPDGELIA 105 (253)
T ss_pred EEEECCCCcEEE
Confidence 778899998765
No 54
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=81.33 E-value=14 Score=30.90 Aligned_cols=86 Identities=17% Similarity=0.117 Sum_probs=45.6
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCCCCCCCC------------------------cHHHHHHHHHHHHhhcCceEEEEcCC
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEPQDDGLD------------------------SRDHWRRVMQGHAGANVVPLVASNRI 142 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~~~~~~~------------------------~~~~~~~~~~~rA~e~~~~vv~an~~ 142 (223)
++.+.++++|+|||+.|=.+........+. ....+....+..|.+++++++. +..
T Consensus 31 ~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lAr~~~i~Iv~-G~~ 109 (299)
T cd07567 31 EIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLDPDRFDYTEVLQRLSCAARENSIYVVA-NLG 109 (299)
T ss_pred HHHHHHHHcCCCEEEccccccCCCCCCccccCchhcccccccccccccccccccCchHHHHHHHHHHHHhCeEEEe-ccc
Confidence 345556678999999987754321110000 0122334456678899999875 221
Q ss_pred Ccccc----ccccCCcceeeeeeeEEECCCCCeeee
Q 027467 143 GKEII----ETEHGKSQITFYGNSFIAGPTGEIVAA 174 (223)
Q Consensus 143 G~~~~----~~~~g~~~~~~~G~S~iv~p~G~il~~ 174 (223)
-.... +...+ +...++-.+.+++|+|+++..
T Consensus 110 e~~~~~~~~~~~~~-~~~~~yNsa~vi~~~G~iv~~ 144 (299)
T cd07567 110 EKQPCDSSDPHCPP-DGRYQYNTNVVFDRDGTLIAR 144 (299)
T ss_pred cccccccccccCCC-CCCceeEEEEEEcCCCCccce
Confidence 11000 00000 111245578899999997754
No 55
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=81.32 E-value=14 Score=30.06 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=42.8
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCCCCCCC------C-----cHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcc
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEPQDDGL------D-----SRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQ 155 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~~~~~~------~-----~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~ 155 (223)
++.+.++++|+|+|+.|=.+.. ++.... . ....+.......|.+++++++.-- .-.. +
T Consensus 23 ~~i~~A~~~gadlivfPE~~~~-gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i~~g~-~~~~---------~ 91 (279)
T TIGR03381 23 RLVREAAARGAQIILLPELFEG-PYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGVVIPVSF-FEKA---------G 91 (279)
T ss_pred HHHHHHHHCCCCEEEcccccCC-CCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCcEEEEee-eecC---------C
Confidence 4456667789999999976432 111100 0 001233445567888898876421 1100 1
Q ss_pred eeeeeeeEEECCCCCeee
Q 027467 156 ITFYGNSFIAGPTGEIVA 173 (223)
Q Consensus 156 ~~~~G~S~iv~p~G~il~ 173 (223)
..++-...+++|+|+++.
T Consensus 92 ~~~yNs~~~i~~~G~i~~ 109 (279)
T TIGR03381 92 NAYYNSLAMIDADGSVLG 109 (279)
T ss_pred CceEEeEEEECCCCCEEE
Confidence 124446778899998764
No 56
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=81.23 E-value=14 Score=29.74 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=42.9
Q ss_pred HHHHHHHcCCcEEEeeccCCCCCCCCCCC----------cHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCccee
Q 027467 88 AARAMVLQGAEILFYPTAIGSEPQDDGLD----------SRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQIT 157 (223)
Q Consensus 88 ~~~~~~~~gadlii~ps~~~~~~~~~~~~----------~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~ 157 (223)
+.+.++++|+|+|+.|=.+... +..... .........+..|.+++++++.-...- . .....
T Consensus 24 ~i~~a~~~ga~liv~PE~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~-~-------~~~~~ 94 (258)
T cd07584 24 LCKEAAAEGADLICFPELATTG-YRPDLLGPKLWELSEPIDGPTVRLFSELAKELGVYIVCGFVEK-G-------GVPGK 94 (258)
T ss_pred HHHHHHHcCCCEEEcccccccC-CCccccchhhHhhccCCCCcHHHHHHHHHHHcCeEEEEeehcc-c-------CCCCc
Confidence 3445567899999999876432 111100 011233445567778888876543210 0 00113
Q ss_pred eeeeeEEECCCCCeeee
Q 027467 158 FYGNSFIAGPTGEIVAA 174 (223)
Q Consensus 158 ~~G~S~iv~p~G~il~~ 174 (223)
+.-...+++|+|+++..
T Consensus 95 ~~Ns~~~i~~~G~i~~~ 111 (258)
T cd07584 95 VYNSAVVIDPEGESLGV 111 (258)
T ss_pred eEEEEEEECCCCCEEeE
Confidence 44577788999987543
No 57
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=81.21 E-value=10 Score=31.12 Aligned_cols=77 Identities=16% Similarity=0.126 Sum_probs=43.2
Q ss_pred HHHHHHHcCCcEEEeeccCCCCCCCCC-----C-----Cc-HHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcce
Q 027467 88 AARAMVLQGAEILFYPTAIGSEPQDDG-----L-----DS-RDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQI 156 (223)
Q Consensus 88 ~~~~~~~~gadlii~ps~~~~~~~~~~-----~-----~~-~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~ 156 (223)
+.+.++.+|+|+|+.|=.+.. ++... . .. ...+.......|.+++++++.. ..-... ..
T Consensus 35 ~i~~A~~~gadlvvfPE~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~g-~~~~~~--------~~ 104 (287)
T cd07568 35 MIREAAEAGAQIVCLQEIFYG-PYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMVLILP-IYEKEQ--------GG 104 (287)
T ss_pred HHHHHHHcCCcEEEcccccCC-CCCccccccchhhhcccCCCChHHHHHHHHHHHCCEEEEEE-eEEEcC--------CC
Confidence 455566789999999886432 11100 0 00 1123344566788999998862 111000 12
Q ss_pred eeeeeeEEECCCCCeeee
Q 027467 157 TFYGNSFIAGPTGEIVAA 174 (223)
Q Consensus 157 ~~~G~S~iv~p~G~il~~ 174 (223)
.++-.+.+++|+|.++..
T Consensus 105 ~~yNs~~~i~~~G~i~~~ 122 (287)
T cd07568 105 TLYNTAAVIDADGTYLGK 122 (287)
T ss_pred cEEEEEEEECCCCcEeeE
Confidence 344577888999987643
No 58
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=80.74 E-value=12 Score=30.05 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=44.1
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCCCCCCC--------CcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceee
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEPQDDGL--------DSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITF 158 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~~~~~~--------~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~ 158 (223)
++.+.++++|+|+|+.|=.+.. ++.... ..........+..|.+++++++.-...-... . ...+
T Consensus 22 ~~i~~A~~~g~dlivfPE~~l~-g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~G~~~~~~~------~-~~~~ 93 (265)
T cd07572 22 ELIEEAAAQGAKLVVLPECFNY-PGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLVGGSIPERDD------D-DGKV 93 (265)
T ss_pred HHHHHHHHCCCCEEECCccccC-cCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEEEeeeccccC------C-CCcE
Confidence 4456667789999999987532 111100 0111233445667888888876432111110 0 0234
Q ss_pred eeeeEEECCCCCeee
Q 027467 159 YGNSFIAGPTGEIVA 173 (223)
Q Consensus 159 ~G~S~iv~p~G~il~ 173 (223)
+-.+.+++|+|.++.
T Consensus 94 yNs~~~i~~~G~i~~ 108 (265)
T cd07572 94 YNTSLVFDPDGELVA 108 (265)
T ss_pred EEEEEEECCCCeEEe
Confidence 557788899998764
No 59
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=78.72 E-value=16 Score=30.23 Aligned_cols=79 Identities=18% Similarity=0.270 Sum_probs=44.5
Q ss_pred hHHHHHHHcCCcEEEeeccCCCC-CCCCCC----CcHH--------------HHHHHHHHHHhhcCceEEEEcCCCcccc
Q 027467 87 EAARAMVLQGAEILFYPTAIGSE-PQDDGL----DSRD--------------HWRRVMQGHAGANVVPLVASNRIGKEII 147 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~-~~~~~~----~~~~--------------~~~~~~~~rA~e~~~~vv~an~~G~~~~ 147 (223)
++.+.++.+|+|+|+.|=.+... +..... ...+ ......+..|.+++++++.... -..
T Consensus 24 ~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~-- 100 (297)
T cd07564 24 RLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVDGPELERLAEAARENGIYVVLGVS-ERD-- 100 (297)
T ss_pred HHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHHHHHHHHHHcCcEEEEeeE-ecc--
Confidence 45666778899999999876431 110000 0011 1122334567788998875421 111
Q ss_pred ccccCCcceeeeeeeEEECCCCCeeeec
Q 027467 148 ETEHGKSQITFYGNSFIAGPTGEIVAAA 175 (223)
Q Consensus 148 ~~~~g~~~~~~~G~S~iv~p~G~il~~~ 175 (223)
...+.-.+.+++|+|+++..-
T Consensus 101 -------~~~~yNs~~vi~~~G~i~~~y 121 (297)
T cd07564 101 -------GGTLYNTQLLIDPDGELLGKH 121 (297)
T ss_pred -------CCceEEEEEEEcCCCCEeeee
Confidence 113445778889999887553
No 60
>PLN00202 beta-ureidopropionase
Probab=77.55 E-value=17 Score=31.77 Aligned_cols=80 Identities=18% Similarity=0.151 Sum_probs=45.8
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCCCCC------CCCc----HHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcce
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEPQDD------GLDS----RDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQI 156 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~~~~------~~~~----~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~ 156 (223)
++.+.++.+|+|+|+.|=.|.. ++.. +... ........+..|.+++++++.. ..... + +. ..
T Consensus 117 ~li~~Aa~~gadLVvfPE~~~~-g~~~~~~~~~~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~G--~~e~~-~---~~-~~ 188 (405)
T PLN00202 117 PMIDAAGAAGVNILCLQEAWTM-PFAFCTREKRWCEFAEPVDGESTKFLQELARKYNMVIVSP--ILERD-V---NH-GE 188 (405)
T ss_pred HHHHHHHHCCCCEEEecchhcc-ccccccccchHHHHhhhCCCHHHHHHHHHHHHCCeEEEEE--eeeee-c---CC-CC
Confidence 3445556789999999987642 2211 1000 0122345566788999998742 21110 0 00 12
Q ss_pred eeeeeeEEECCCCCeeee
Q 027467 157 TFYGNSFIAGPTGEIVAA 174 (223)
Q Consensus 157 ~~~G~S~iv~p~G~il~~ 174 (223)
.++-.+.+++|+|.++..
T Consensus 189 ~~yNSa~vI~~~G~iig~ 206 (405)
T PLN00202 189 TLWNTAVVIGNNGNIIGK 206 (405)
T ss_pred cEEEEEEEECCCCcEEEE
Confidence 355678888999988755
No 61
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=77.40 E-value=19 Score=29.38 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=43.3
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCCCCCC-C----------CcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcc
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEPQDDG-L----------DSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQ 155 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~~~~~-~----------~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~ 155 (223)
++.+.++.+|+|+++.|=.+.. ++... . ...+.+.......|.+++++++... .-... .
T Consensus 23 ~~i~~A~~~gadlivfPE~~l~-g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i~iv~g~-~~~~~--------~ 92 (284)
T cd07573 23 ELVREAAAQGAQIVCLQELFET-PYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGVVIPVSL-FEKRG--------N 92 (284)
T ss_pred HHHHHHHHCCCcEEEccccccC-CCCcccccchhHHhccccCCCHHHHHHHHHHHHCCEEEEecc-eeeCC--------C
Confidence 4566677889999999986432 11110 0 0011223344556778888876532 11110 1
Q ss_pred eeeeeeeEEECCCCCeeee
Q 027467 156 ITFYGNSFIAGPTGEIVAA 174 (223)
Q Consensus 156 ~~~~G~S~iv~p~G~il~~ 174 (223)
-.++-...+++|+|.++..
T Consensus 93 ~~~yNs~~v~~~~G~i~~~ 111 (284)
T cd07573 93 GLYYNSAVVIDADGSLLGV 111 (284)
T ss_pred CcEEEEEEEECCCCCEEeE
Confidence 1345577788899987644
No 62
>PLN02747 N-carbamolyputrescine amidase
Probab=77.10 E-value=18 Score=29.88 Aligned_cols=78 Identities=17% Similarity=0.056 Sum_probs=42.9
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCCCC-----CCCC-----cHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcce
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEPQD-----DGLD-----SRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQI 156 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~~~-----~~~~-----~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~ 156 (223)
++.+.++..|+|+|+.|=.+...-.. ..+. ............|.+++++++..- .... ..
T Consensus 29 ~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~~g~-~~~~---------~~ 98 (296)
T PLN02747 29 RLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLAKELGVVIPVSF-FEEA---------NN 98 (296)
T ss_pred HHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHHHHcCeEEEeee-eecC---------CC
Confidence 45666778899999998875321110 0000 001233345557778898876532 1111 11
Q ss_pred eeeeeeEEECCCCCeeee
Q 027467 157 TFYGNSFIAGPTGEIVAA 174 (223)
Q Consensus 157 ~~~G~S~iv~p~G~il~~ 174 (223)
.++-...+++|+|.+++.
T Consensus 99 ~~yNs~~~i~~~G~i~~~ 116 (296)
T PLN02747 99 AHYNSIAIIDADGTDLGL 116 (296)
T ss_pred ceEEEEEEECCCCCCcce
Confidence 234466778899987644
No 63
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=76.99 E-value=15 Score=31.60 Aligned_cols=79 Identities=14% Similarity=0.192 Sum_probs=45.4
Q ss_pred HHHHHHHcCCcEEEeeccCCCCCCCC-------CC---Cc--HHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcc
Q 027467 88 AARAMVLQGAEILFYPTAIGSEPQDD-------GL---DS--RDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQ 155 (223)
Q Consensus 88 ~~~~~~~~gadlii~ps~~~~~~~~~-------~~---~~--~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~ 155 (223)
+.+.++.+|+|||+.|=.|.. ++.. +. .. ...+....+..|.+++++|+.. ...... ..+
T Consensus 95 ~i~~Aa~~gadLivfPE~~l~-g~~~~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~g-i~e~~~------~~~ 166 (363)
T cd07587 95 IIEAAAMAGVNIICFQEAWTM-PFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNMVIVSP-ILERDE------EHG 166 (363)
T ss_pred HHHHHHHcCCCEEEccccccC-CccccccccchHHHHhhccCCChHHHHHHHHHHHcCcEEEEe-eeeeec------CCC
Confidence 445566789999999987753 2210 00 00 1123345667888999998742 111100 001
Q ss_pred eeeeeeeEEECCCCCeeee
Q 027467 156 ITFYGNSFIAGPTGEIVAA 174 (223)
Q Consensus 156 ~~~~G~S~iv~p~G~il~~ 174 (223)
..++-.+.+++|+|+++..
T Consensus 167 ~~~yNta~vi~~~G~ilg~ 185 (363)
T cd07587 167 DTIWNTAVVISNSGNVLGK 185 (363)
T ss_pred CcEEEEEEEECCCCCEEee
Confidence 2345578888999998754
No 64
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=76.47 E-value=19 Score=28.55 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=43.3
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCC-CCCC-------CCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceee
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEP-QDDG-------LDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITF 158 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~-~~~~-------~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~ 158 (223)
.+.+.+.++|+|+++.|-.+-... .... ......+....+..|.+++++++.-.. -.. ...+
T Consensus 22 ~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~-~~~---------~~~~ 91 (253)
T cd07197 22 RLIKEAAEQGADLIVLPELFLTGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYIVAGIA-EKD---------GDKL 91 (253)
T ss_pred HHHHHHHHCCCCEEEcCCccccCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEEEeeeE-Ecc---------CCce
Confidence 345566678999999998653211 1100 001123445556677788888764322 100 1134
Q ss_pred eeeeEEECCCCCeee
Q 027467 159 YGNSFIAGPTGEIVA 173 (223)
Q Consensus 159 ~G~S~iv~p~G~il~ 173 (223)
.-...+++|+|.++.
T Consensus 92 ~N~~~~i~~~G~i~~ 106 (253)
T cd07197 92 YNTAVVIDPDGEIIG 106 (253)
T ss_pred EEEEEEECCCCeEEE
Confidence 557778899998653
No 65
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=73.61 E-value=23 Score=29.50 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=39.1
Q ss_pred cCCcEEEeeccCCCCCCCCCCC-c---------HHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeeeeeEE
Q 027467 95 QGAEILFYPTAIGSEPQDDGLD-S---------RDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFI 164 (223)
Q Consensus 95 ~gadlii~ps~~~~~~~~~~~~-~---------~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~S~i 164 (223)
+|+|||+.|=.+... +..... . ........+..|.+++++++.-. .-... + +...++-.+.+
T Consensus 35 ~gadLIVfPEl~ltG-Y~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~-~e~~~-----~-~~~~~yNta~v 106 (295)
T cd07566 35 KKPDILVLPELALTG-YNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGY-PEKVD-----E-SSPKLYNSALV 106 (295)
T ss_pred CCCcEEEcCCCCccc-CCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEee-eEecC-----C-CCCceEEEEEE
Confidence 799999999875421 111100 0 01112233456778899887532 11100 0 00135567889
Q ss_pred ECCCCCeeee
Q 027467 165 AGPTGEIVAA 174 (223)
Q Consensus 165 v~p~G~il~~ 174 (223)
++|+|++++.
T Consensus 107 i~~~G~ii~~ 116 (295)
T cd07566 107 VDPEGEVVFN 116 (295)
T ss_pred EcCCCeEEEE
Confidence 9999988754
No 66
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=73.32 E-value=29 Score=27.88 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=40.9
Q ss_pred HHHHHHHcCCcEEEeeccCCCCCCCCC-C-----CcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeeee
Q 027467 88 AARAMVLQGAEILFYPTAIGSEPQDDG-L-----DSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGN 161 (223)
Q Consensus 88 ~~~~~~~~gadlii~ps~~~~~~~~~~-~-----~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~ 161 (223)
+.+.++.+|+|+++.|=.......... . .....+.......|.+++++++.-.. -.. ...+.-.
T Consensus 24 ~i~~a~~~gadliv~PE~~l~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~-~~~---------~~~~yNs 93 (261)
T cd07585 24 WTRKAAAQGAELVCFPEMCITGYTHVRALSREAEVPDGPSTQALSDLARRYGLTILAGLI-EKA---------GDRPYNT 93 (261)
T ss_pred HHHHHHHcCCCEEEecccccccccCCcccchhcccCCChHHHHHHHHHHHcCcEEEEecc-ccC---------CCceeEE
Confidence 455566789999999876432111100 0 00112333455567888988874422 111 1134557
Q ss_pred eEEECCCCCe
Q 027467 162 SFIAGPTGEI 171 (223)
Q Consensus 162 S~iv~p~G~i 171 (223)
..+++|+|.+
T Consensus 94 ~~vi~~~g~i 103 (261)
T cd07585 94 YLVCLPDGLV 103 (261)
T ss_pred EEEECCCCcE
Confidence 7788888864
No 67
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=71.36 E-value=29 Score=28.78 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=43.1
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCCCCCCC--Cc--HH---------HHHHHHHHHHhhcCceEEEEcCCCccccccccCC
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEPQDDGL--DS--RD---------HWRRVMQGHAGANVVPLVASNRIGKEIIETEHGK 153 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~~~~~~--~~--~~---------~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~ 153 (223)
+..+.++.+|+|||+.|=.+...-+..+. .. .. .........|.+++++++.-.. .... +.
T Consensus 29 ~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~-~~~~-----~~ 102 (302)
T cd07569 29 ALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLFDRAKELGIGFYLGYA-ELTE-----DG 102 (302)
T ss_pred HHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHHHHHHHhCeEEEEece-eecC-----CC
Confidence 34566677899999999876432111000 00 00 1122234567788998865321 1000 00
Q ss_pred cceeeeeeeEEECCCCCeeee
Q 027467 154 SQITFYGNSFIAGPTGEIVAA 174 (223)
Q Consensus 154 ~~~~~~G~S~iv~p~G~il~~ 174 (223)
....+.-...+++|+|+++..
T Consensus 103 ~~~~~yNsa~~i~~~G~i~~~ 123 (302)
T cd07569 103 GVKRRFNTSILVDKSGKIVGK 123 (302)
T ss_pred CcceeeeEEEEECCCCCEeee
Confidence 011344467888999987644
No 68
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=67.95 E-value=43 Score=27.60 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=40.2
Q ss_pred cCCcEEEeeccCCCCC-CCCCC----------CcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeeeeeE
Q 027467 95 QGAEILFYPTAIGSEP-QDDGL----------DSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSF 163 (223)
Q Consensus 95 ~gadlii~ps~~~~~~-~~~~~----------~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~S~ 163 (223)
+|+|||+.|=.+...- ..... .....+.......|.+++++++.-.. -... .....++-.+.
T Consensus 41 ~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~-e~~~------~~~~~~yNsa~ 113 (294)
T cd07582 41 LPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIPGPETEALGEKAKELNVYIAANAY-ERDP------DFPGLYFNTAF 113 (294)
T ss_pred CCceEEEcCccccccCCcccchhhhhhhhccccCCCHHHHHHHHHHHHcCEEEEEeee-eecC------CCCCcEEEEEE
Confidence 4799999988754211 10000 00112334556678889998875332 1110 00123455788
Q ss_pred EECCCCCeeeec
Q 027467 164 IAGPTGEIVAAA 175 (223)
Q Consensus 164 iv~p~G~il~~~ 175 (223)
+++|+|+++..-
T Consensus 114 ~i~~~G~i~~~y 125 (294)
T cd07582 114 IIDPSGEIILRY 125 (294)
T ss_pred EECCCCcEEEEE
Confidence 889999987653
No 69
>PLN02504 nitrilase
Probab=67.48 E-value=42 Score=28.60 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=42.6
Q ss_pred HHHHHHHcCCcEEEeeccCCCC-CCCCCCC---------cHH--------------HHHHHHHHHHhhcCceEEEEcCCC
Q 027467 88 AARAMVLQGAEILFYPTAIGSE-PQDDGLD---------SRD--------------HWRRVMQGHAGANVVPLVASNRIG 143 (223)
Q Consensus 88 ~~~~~~~~gadlii~ps~~~~~-~~~~~~~---------~~~--------------~~~~~~~~rA~e~~~~vv~an~~G 143 (223)
+...++.+|+|||+.|=.+... |....+. ..+ .........|.+++++++.-.. -
T Consensus 49 li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~i~~l~~~A~~~~i~iv~G~~-e 127 (346)
T PLN02504 49 LIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDVPGPEVDRLAAMAGKYKVYLVMGVI-E 127 (346)
T ss_pred HHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhcccCCCHHHHHHHHHHHHcCCEEEEeee-e
Confidence 3445567899999999875431 1100000 000 1122334467788988865321 1
Q ss_pred ccccccccCCcceeeeeeeEEECCCCCeeeec
Q 027467 144 KEIIETEHGKSQITFYGNSFIAGPTGEIVAAA 175 (223)
Q Consensus 144 ~~~~~~~~g~~~~~~~G~S~iv~p~G~il~~~ 175 (223)
.. +-.++-.+.+++|+|.++..-
T Consensus 128 ~~---------~~~~yNsa~~i~~~G~i~~~y 150 (346)
T PLN02504 128 RD---------GYTLYCTVLFFDPQGQYLGKH 150 (346)
T ss_pred cC---------CCceEEEEEEECCCCCEEeEE
Confidence 11 113556788889999886543
No 70
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=66.21 E-value=11 Score=28.28 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=17.9
Q ss_pred eeEEEEEECCCCceeeeeeccCC
Q 027467 24 HYNSIAIIDADGSDLGLYRKSHI 46 (223)
Q Consensus 24 ~yNs~~vi~~~G~i~~~y~K~~l 46 (223)
.--+.++||++|.|...+++...
T Consensus 119 ~~R~TfvId~dG~I~~~~~~v~~ 141 (157)
T COG1225 119 IERSTFVIDPDGKIRYVWRKVKV 141 (157)
T ss_pred ccceEEEECCCCeEEEEecCCCC
Confidence 45678999999999887766654
No 71
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=63.35 E-value=46 Score=27.29 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=39.9
Q ss_pred HHHHHHHcCCcEEEeeccCCCCCCCCC-C--CcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeeeeeEE
Q 027467 88 AARAMVLQGAEILFYPTAIGSEPQDDG-L--DSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFI 164 (223)
Q Consensus 88 ~~~~~~~~gadlii~ps~~~~~~~~~~-~--~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~S~i 164 (223)
+.+.++++|+|+|+.|=.+........ . ..........+..|.+++++++.-. .... ...+.-.+.+
T Consensus 23 ~i~~A~~~gadlvvfPE~~ltG~~~~~~~~~~~~~~~~~~l~~lA~~~~i~iv~G~-~~~~---------~~~~yNs~~v 92 (279)
T cd07579 23 LAAEAKATGAELVVFPELALTGLDDPASEAESDTGPAVSALRRLARRLRLYLVAGF-AEAD---------GDGLYNSAVL 92 (279)
T ss_pred HHHHHHHCCCCEEEeCCccccCCCChHHhcccCCCHHHHHHHHHHHHcCeEEEEec-eEcc---------CCcEEEEEEE
Confidence 344556789999999976533211000 0 0011234445667888998887532 1111 1123446778
Q ss_pred ECCCCC
Q 027467 165 AGPTGE 170 (223)
Q Consensus 165 v~p~G~ 170 (223)
++|+|.
T Consensus 93 i~~~G~ 98 (279)
T cd07579 93 VGPEGL 98 (279)
T ss_pred EeCCee
Confidence 888883
No 72
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.26 E-value=21 Score=24.13 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=28.8
Q ss_pred cCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCc
Q 027467 95 QGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGK 144 (223)
Q Consensus 95 ~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~ 144 (223)
..+|+||+++..- ++.. ....+..|.++++|++.++..|.
T Consensus 47 ~~aD~VIv~t~~v---------sH~~-~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 47 KKADLVIVFTDYV---------SHNA-MWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred CCCCEEEEEeCCc---------ChHH-HHHHHHHHHHcCCcEEEECCCCH
Confidence 5689999988732 2222 23456678899999999987664
No 73
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=63.04 E-value=37 Score=25.45 Aligned_cols=74 Identities=19% Similarity=0.305 Sum_probs=43.0
Q ss_pred HHHHHHcCCcEEEeeccCCCCCCCC---CCCcH-----------HHHHHHHHHHHhhcCceEEEEcCCCccccccccCCc
Q 027467 89 ARAMVLQGAEILFYPTAIGSEPQDD---GLDSR-----------DHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKS 154 (223)
Q Consensus 89 ~~~~~~~gadlii~ps~~~~~~~~~---~~~~~-----------~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~ 154 (223)
.+.++.+|+|+|+.|=.+... +.. ..... ..+.......|.+++++++.-.. ...
T Consensus 27 ~~~a~~~~~dlvv~PE~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~-~~~--------- 95 (186)
T PF00795_consen 27 IEEAARQGADLVVFPEMALPG-YPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIP-ERD--------- 95 (186)
T ss_dssp HHHHHHTTESEEEEETTTTTC-S-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEE-EEE---------
T ss_pred HHHHHHCCCCEEEcCcchhcc-cccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccccc-ccc---------
Confidence 455567799999999875431 100 00000 12333445678889988765522 111
Q ss_pred ceeeeeeeEEECCCCCeee
Q 027467 155 QITFYGNSFIAGPTGEIVA 173 (223)
Q Consensus 155 ~~~~~G~S~iv~p~G~il~ 173 (223)
+..+.-.+.+++|+|.++.
T Consensus 96 ~~~~~N~~~~~~~~g~~~~ 114 (186)
T PF00795_consen 96 DGGLYNSAVVIDPDGEILG 114 (186)
T ss_dssp TTEEEEEEEEEETTSEEEE
T ss_pred cccccceeEEEEeeecccc
Confidence 1235567788899998873
No 74
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=62.62 E-value=7.8 Score=31.52 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=32.9
Q ss_pred CHHHHHHcCcEEeeeeeeecCC---ceeEEEEEECCCCceeeeeeccC
Q 027467 1 MQELAKELGVVMPVSFFEEANN---AHYNSIAIIDADGSDLGLYRKSH 45 (223)
Q Consensus 1 l~~~A~~~~i~i~~G~~~~~~~---~~yNs~~vi~~~G~i~~~y~K~~ 45 (223)
+++.|+++.++...|-...+.+ ..---++++||+|+.+..|.+.+
T Consensus 215 vk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 215 VKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred HHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccC
Confidence 3678999999998876544333 12344789999999988877765
No 75
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=61.82 E-value=44 Score=23.54 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=54.0
Q ss_pred eeeeeecCCceeEEEEEECCCCceeeeeeccCCCC--CC----CC-ccc-ccccCCCCCcceEeeCCceEEEEEeecCCC
Q 027467 14 VSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPD--GP----GY-QEK-FYFNPGDTGFKVFQTKFAKIGVAICWDQWF 85 (223)
Q Consensus 14 ~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~--~~----~~-~e~-~~~~~G~~~~~~~~~~~~~ig~~IC~D~~~ 85 (223)
+|.+. -+++-|+.=++|.|+|++ .+..|. +.. ++ .. .|. ..+..+. .++-+.-|..|.+- .-
T Consensus 9 FG~v~-i~Gk~f~~DIvi~~dG~v-~rr~K~-lskrK~GTSHkl~~eEle~~lee~~---E~ivvGTG~~G~l~----l~ 78 (121)
T COG1504 9 FGSVT-IGGKDFEHDIVIRPDGKV-ERREKE-LSKRKYGTSHKLALEELEELLEEGP---EVIVVGTGQSGMLE----LS 78 (121)
T ss_pred eeeEE-ECCEeccccEEEecCCce-ehhhhh-hhhhhcCcccccCHHHHHHHHhcCC---cEEEEecCceeEEE----eC
Confidence 34443 367889999999999986 344443 221 11 00 111 1234443 35555555666552 34
Q ss_pred chHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHH
Q 027467 86 PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQ 126 (223)
Q Consensus 86 pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~ 126 (223)
++....+.+.++++++.|+. .....|..+..
T Consensus 79 ~ea~e~~r~k~~~vi~~pT~----------EAikr~nel~~ 109 (121)
T COG1504 79 EEAREFFRKKGCEVIELPTP----------EAIKRYNELRG 109 (121)
T ss_pred HHHHHHHHhcCCeEEEeCCH----------HHHHHHHHHhc
Confidence 55666667899999999987 34566665543
No 76
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=61.61 E-value=41 Score=27.34 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=39.9
Q ss_pred HHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeeeeeEEECCC
Q 027467 89 ARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPT 168 (223)
Q Consensus 89 ~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~S~iv~p~ 168 (223)
.+.++.+|+|+++.|=..... +. . .........+..|.+++++++.-... ... +...+.-.+.+++|+
T Consensus 32 i~~a~~~ga~lvvfPE~~l~g-~~-~--~~~~~~~~l~~~ak~~~i~ii~G~~~-~~~-------~~~~~~Ns~~~i~~~ 99 (270)
T cd07571 32 TRELADEKPDLVVWPETALPF-DL-Q--RDPDALARLARAARAVGAPLLTGAPR-REP-------GGGRYYNSALLLDPG 99 (270)
T ss_pred HhhcccCCCCEEEecCCcCCc-cc-c--cCHHHHHHHHHHHHhcCCeEEEeeee-ecc-------CCCceEEEEEEECCC
Confidence 344456689999998764321 11 1 11223344455677889988753321 110 001234467788999
Q ss_pred CCeee
Q 027467 169 GEIVA 173 (223)
Q Consensus 169 G~il~ 173 (223)
|.++.
T Consensus 100 G~i~~ 104 (270)
T cd07571 100 GGILG 104 (270)
T ss_pred CCCcC
Confidence 98654
No 77
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=61.60 E-value=70 Score=26.41 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=38.7
Q ss_pred cCCcEEEeeccCCCC-CCCCCC-----C-cHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeeeeeEEECC
Q 027467 95 QGAEILFYPTAIGSE-PQDDGL-----D-SRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 167 (223)
Q Consensus 95 ~gadlii~ps~~~~~-~~~~~~-----~-~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~S~iv~p 167 (223)
+|+|||+.|=.+... +++... . .........+..|.+++++++.. ...... + ....+.-.+.+++|
T Consensus 38 ~gadLvvfPE~~ltGy~~~~~~~~~~a~~~~~~~~~~l~~lA~~~~i~i~~g-~~e~~~-----~-~~~~~yNsa~~i~~ 110 (291)
T cd07565 38 PGMDLIVFPEYSTQGLMYDKWTMDETACTVPGPETDIFAEACKEAKVWGVFS-IMERNP-----D-HGKNPYNTAIIIDD 110 (291)
T ss_pred CCCeEEEeCCcccccCCCCcchhhhhccCCCChhHHHHHHHHHHCCeEEEEE-eeeecC-----C-CCCceEEEEEEECC
Confidence 499999999876432 111110 0 01122334456677888887642 111110 0 00134457788899
Q ss_pred CCCeeee
Q 027467 168 TGEIVAA 174 (223)
Q Consensus 168 ~G~il~~ 174 (223)
+|+++..
T Consensus 111 ~G~i~~~ 117 (291)
T cd07565 111 QGEIVLK 117 (291)
T ss_pred CCcEEEE
Confidence 9987655
No 78
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=58.52 E-value=83 Score=25.18 Aligned_cols=77 Identities=13% Similarity=0.207 Sum_probs=38.7
Q ss_pred HHHHHHHcCCcEEEeeccCCC-CCC-CCC----C-Cc-HHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeee
Q 027467 88 AARAMVLQGAEILFYPTAIGS-EPQ-DDG----L-DS-RDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFY 159 (223)
Q Consensus 88 ~~~~~~~~gadlii~ps~~~~-~~~-~~~----~-~~-~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~ 159 (223)
+.+.++++|+|+|+.|=.+.. .+. +.. + .. .+.........|.+++++++.-... .. .....++
T Consensus 25 ~i~~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~ii~G~~~-~~-------~~~~~~y 96 (258)
T cd07578 25 LCEEAARAGARLIVTPEMATTGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDCYIVVGLPE-VD-------SRSGIYY 96 (258)
T ss_pred HHHHHHhCCCCEEEcccccccCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCcEEEEecce-ec-------CCCCCee
Confidence 445566789999999987532 111 100 0 00 0011223444577888887654321 00 0011234
Q ss_pred eeeEEECCCCCeee
Q 027467 160 GNSFIAGPTGEIVA 173 (223)
Q Consensus 160 G~S~iv~p~G~il~ 173 (223)
-...+++|+| ++.
T Consensus 97 Ns~~vi~~~g-~~~ 109 (258)
T cd07578 97 NSAVLIGPSG-VIG 109 (258)
T ss_pred EEEEEECCCC-cEE
Confidence 4667888888 443
No 79
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=57.28 E-value=96 Score=24.59 Aligned_cols=75 Identities=11% Similarity=-0.065 Sum_probs=42.7
Q ss_pred CcceEeeCCceEEEEEeecCCCc---------------------hHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHH
Q 027467 64 GFKVFQTKFAKIGVAICWDQWFP---------------------EAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWR 122 (223)
Q Consensus 64 ~~~~~~~~~~~ig~~IC~D~~~p---------------------e~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~ 122 (223)
.+.+++.++.|||++=+.+...+ +..+.++++ +|++|+.+.|+.... . .+.....
T Consensus 122 ~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~-~--~p~~~~~ 197 (239)
T cd07381 122 RPAILEVNGIKVAFLAYTYGTNGIPLAAGARPGGVNPLDLERIAADIAEAKKK-ADIVIVSLHWGVEYS-Y--YPTPEQR 197 (239)
T ss_pred CcEEEEECCEEEEEEEEECCCCCCcCcccCCccccCccCHHHHHHHHHHHhhc-CCEEEEEecCcccCC-C--CCCHHHH
Confidence 35678899999999866554321 123334444 999999999875321 1 1112222
Q ss_pred HHHHHHHhhcCceEEEEcCCC
Q 027467 123 RVMQGHAGANVVPLVASNRIG 143 (223)
Q Consensus 123 ~~~~~rA~e~~~~vv~an~~G 143 (223)
.++ ...++.|+-+|......
T Consensus 198 ~la-~~l~~~G~D~IiG~H~H 217 (239)
T cd07381 198 ELA-RALIDAGADLVIGHHPH 217 (239)
T ss_pred HHH-HHHHHCCCCEEEcCCCC
Confidence 222 23345677777665544
No 80
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=55.35 E-value=58 Score=26.44 Aligned_cols=85 Identities=15% Similarity=0.175 Sum_probs=50.6
Q ss_pred chHHHHHHHcCCcEEEeeccCCCCCCCCCC-----Cc-HHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeee
Q 027467 86 PEAARAMVLQGAEILFYPTAIGSEPQDDGL-----DS-RDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFY 159 (223)
Q Consensus 86 pe~~~~~~~~gadlii~ps~~~~~~~~~~~-----~~-~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~ 159 (223)
-|+.+.++++||++++.|-+...-..++.- +. ......-.+..|.++++|+-....--... ++.....
T Consensus 37 keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l~~k~m~~y~elar~~nIwlSlgg~~~r~~------~~~~k~~ 110 (295)
T KOG0807|consen 37 KELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPLDGKFMEQYRELARSHNIWLSLGGHHERSD------DGNQKLR 110 (295)
T ss_pred HHHHHHHHHcCCCEEEcchhhhhhcCCcccceecccccChHHHHHHHHHHHhcCeeEEeccccCCCc------cccceee
Confidence 477788889999999999885432222110 00 12333445566778888885433222111 0123455
Q ss_pred eeeEEECCCCCeeeecC
Q 027467 160 GNSFIAGPTGEIVAAAD 176 (223)
Q Consensus 160 G~S~iv~p~G~il~~~~ 176 (223)
-...++|..|.++++-.
T Consensus 111 N~hl~id~~G~i~a~Y~ 127 (295)
T KOG0807|consen 111 NTHLLIDSKGEIRAEYQ 127 (295)
T ss_pred eeEEEEcCCchHHHHHh
Confidence 57888899999877653
No 81
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=54.85 E-value=70 Score=28.93 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=58.2
Q ss_pred EEEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEe-eCCceEEEEEeecCCCchHHHHHHHcCCcEEEeec
Q 027467 26 NSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQ-TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPT 104 (223)
Q Consensus 26 Ns~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~-~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps 104 (223)
....|++.+|++++.-....+.....|... .. +..+ -+-.++|.+|+-.....|-++.+...|+|+|+.=+
T Consensus 197 ~~LPVVD~~g~LvGvITr~DIlk~~~~p~~-----~~---~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~ 268 (505)
T PLN02274 197 GKLPLVNEDGELVDLVTRTDVKRVKGYPKL-----GK---PSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVLDS 268 (505)
T ss_pred CEEEEEcCCCeEEEEEEHHHHHHHhhCcCc-----cc---cccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeC
Confidence 446677777777777666554321111111 00 0111 23468999998766667888999999999999866
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEc
Q 027467 105 AIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASN 140 (223)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an 140 (223)
+-+ .....|..+.+.++.--+..++..|
T Consensus 269 ~~g--------~~~~~~~~i~~ik~~~p~~~vi~g~ 296 (505)
T PLN02274 269 SQG--------DSIYQLEMIKYIKKTYPELDVIGGN 296 (505)
T ss_pred CCC--------CcHHHHHHHHHHHHhCCCCcEEEec
Confidence 411 2345666666655543345555443
No 82
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=52.76 E-value=47 Score=26.69 Aligned_cols=61 Identities=16% Similarity=0.257 Sum_probs=33.0
Q ss_pred eEEEEEeecCCCchHHHHHHHcCCcEEEe--eccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEE
Q 027467 74 KIGVAICWDQWFPEAARAMVLQGAEILFY--PTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 139 (223)
Q Consensus 74 ~ig~~IC~D~~~pe~~~~~~~~gadlii~--ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~a 139 (223)
.=++++|.|.. ++..+.+..+|+|+||. |..|.. ... .. ...........++++++.|.++
T Consensus 32 v~~V~~~ld~t-~~vi~~A~~~~~dlIItHHP~~f~~--~~~-~~-~~~~~~~~~~~li~~~I~vy~~ 94 (241)
T PF01784_consen 32 VKKVLVALDAT-PEVIEEAIEKGADLIITHHPLFFKP--LKS-LT-GDDYKGKIIEKLIKNGISVYSA 94 (241)
T ss_dssp ESEEEEESS-S-HHHHHHHHHTT-SEEEESS-SSSST--SSH-CH-CHSHHHHHHHHHHHTT-EEEEE
T ss_pred cCEEEEEEeCC-HHHHHHHHHcCCCEEEEcCchhhcC--Ccc-cc-ccchhhHHHHHHHHCCCEEEEe
Confidence 34677888874 56667778899999997 544421 100 00 1112223344667788888766
No 83
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=52.61 E-value=98 Score=26.31 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=45.5
Q ss_pred ceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcH-HHHHHHHHHHHhhcCceEEEEcCCCc
Q 027467 73 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSR-DHWRRVMQGHAGANVVPLVASNRIGK 144 (223)
Q Consensus 73 ~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~-~~~~~~~~~rA~e~~~~vv~an~~G~ 144 (223)
.++.++-|+=-.-+++.+.+...|++-||.-.. +. ...+. ..|... -.++.+.|++||.+.+++.
T Consensus 210 ~~V~ii~~~pG~~~~~l~~~~~~~~~GiVl~~~-G~-----Gn~p~~~~~~~~-l~~~~~~Gi~VV~~Sr~~~ 275 (335)
T PRK09461 210 QPIGVVTIYPGISAEVVRNFLRQPVKALILRSY-GV-----GNAPQNPALLQE-LKEASERGIVVVNLTQCMS 275 (335)
T ss_pred CcEEEEEecCCCCHHHHHHHHhCCCCEEEEccC-CC-----CCCCCCHHHHHH-HHHHHHCCCEEEEeCCCCC
Confidence 478888888888899999888889888887543 11 11121 233333 3467789999999999863
No 84
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=52.60 E-value=58 Score=26.40 Aligned_cols=75 Identities=17% Similarity=0.297 Sum_probs=40.0
Q ss_pred HHHHHHHcCCcEEEeeccCCC-----CCCCCC-----C----CcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCC
Q 027467 88 AARAMVLQGAEILFYPTAIGS-----EPQDDG-----L----DSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGK 153 (223)
Q Consensus 88 ~~~~~~~~gadlii~ps~~~~-----~~~~~~-----~----~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~ 153 (223)
+.+.++++|+|||+.|=.+.. .+.+.. . ...+.+....+..|.+++++++.-...-..
T Consensus 26 ~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~-------- 97 (280)
T cd07574 26 WVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAALTPDYVALFSELARKYGINIIAGSMPVRE-------- 97 (280)
T ss_pred HHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEecceEEcC--------
Confidence 345566789999999886531 111100 0 001123334456788889987643211000
Q ss_pred cceeeeeeeEEECCCCCe
Q 027467 154 SQITFYGNSFIAGPTGEI 171 (223)
Q Consensus 154 ~~~~~~G~S~iv~p~G~i 171 (223)
+..++-.+.+++|+|.+
T Consensus 98 -~~~~yNs~~~i~~~G~v 114 (280)
T cd07574 98 -DGRLYNRAYLFGPDGTI 114 (280)
T ss_pred -CCCeEEEEEEECCCCCE
Confidence 11234477788888876
No 85
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=52.18 E-value=23 Score=29.58 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=24.6
Q ss_pred CceeEEEEEECCCCceeeeeeccCCCC
Q 027467 22 NAHYNSIAIIDADGSDLGLYRKSHIPD 48 (223)
Q Consensus 22 ~~~yNs~~vi~~~G~i~~~y~K~~l~~ 48 (223)
-..||...+||-+|..+.+|+|.++..
T Consensus 125 ~~~yrk~hlFD~d~~~~~ry~e~~~~~ 151 (298)
T KOG0806|consen 125 LAKYRKNHLFDTDGPGVIRYRESHLLS 151 (298)
T ss_pred hheeeeeEEeccCCccceeeeeeeccC
Confidence 378999999999999999999999875
No 86
>PRK13287 amiF formamidase; Provisional
Probab=50.33 E-value=1.3e+02 Score=25.45 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=37.8
Q ss_pred cCCcEEEeeccCCCC-CCCCCCC------cHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeeeeeEEECC
Q 027467 95 QGAEILFYPTAIGSE-PQDDGLD------SRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 167 (223)
Q Consensus 95 ~gadlii~ps~~~~~-~~~~~~~------~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~S~iv~p 167 (223)
.|+|||+.|=.+... +.+.+.. -...........|.+++++++.. ...... +...+.-...+++|
T Consensus 51 ~gadLVVfPE~~l~G~~~~~~~~~~~a~~~~g~~~~~l~~~a~~~~i~~~~g-~~e~~~-------~~~~~yNsa~vi~~ 122 (333)
T PRK13287 51 PGLDLIVFPEYSTQGLNTKKWTTEEFLCTVDGPEVDAFAQACKENKVWGVFS-IMERNP-------DGNEPYNTAIIIDD 122 (333)
T ss_pred CCCcEEEcCCcccccCCccccchhhhcccCCCHHHHHHHHHHHHcCeEEEEe-eEEEcC-------CCCceEEEEEEECC
Confidence 389999998775431 1111100 01122333445667888887642 111100 01113447788899
Q ss_pred CCCeeeec
Q 027467 168 TGEIVAAA 175 (223)
Q Consensus 168 ~G~il~~~ 175 (223)
+|+++..-
T Consensus 123 ~G~i~~~Y 130 (333)
T PRK13287 123 QGEIILKY 130 (333)
T ss_pred CCcEEEEE
Confidence 99987553
No 87
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=49.16 E-value=1e+02 Score=24.59 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=38.2
Q ss_pred HHHHHHcCCcEEEeeccCCCCCCCCCCCc-----HHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeeeeeE
Q 027467 89 ARAMVLQGAEILFYPTAIGSEPQDDGLDS-----RDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSF 163 (223)
Q Consensus 89 ~~~~~~~gadlii~ps~~~~~~~~~~~~~-----~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~S~ 163 (223)
.+.++. |+|+|+.|=.+... +...... ........+..|.++++.++.. ..-.. +..+.-.+.
T Consensus 26 i~~a~~-gadlvvfPE~~l~g-~~~~~~~~~~~~~~~~~~~l~~la~~~~i~i~~~-~~~~~---------~~~~yNs~~ 93 (252)
T cd07575 26 IEQLKE-KTDLIVLPEMFTTG-FSMNAEALAEPMNGPTLQWMKAQAKKKGAAITGS-LIIKE---------GGKYYNRLY 93 (252)
T ss_pred HHHhhc-CCCEEEeCCcCcCC-CCccHHHhhcccCChHHHHHHHHHHHCCeEEEEE-EEEcc---------CCceEEEEE
Confidence 444454 99999999875321 1100000 1122334556788888876532 21111 113455777
Q ss_pred EECCCCCee
Q 027467 164 IAGPTGEIV 172 (223)
Q Consensus 164 iv~p~G~il 172 (223)
+++|+|.+.
T Consensus 94 ~i~~~G~i~ 102 (252)
T cd07575 94 FVTPDGEVY 102 (252)
T ss_pred EECCCCCEE
Confidence 888999764
No 88
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=47.55 E-value=83 Score=26.14 Aligned_cols=52 Identities=15% Similarity=0.035 Sum_probs=38.2
Q ss_pred CchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccc
Q 027467 85 FPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEI 146 (223)
Q Consensus 85 ~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~ 146 (223)
-|+..+.+..+|+..+++.++- |. +..+......|.++++.++..|..|...
T Consensus 76 v~~~l~e~~~~Gvk~avIis~G--------f~--e~~~~~l~~~a~~~girilGPNc~Giin 127 (286)
T TIGR01019 76 AADAIFEAIDAGIELIVCITEG--------IP--VHDMLKVKRYMEESGTRLIGPNCPGIIT 127 (286)
T ss_pred HHHHHHHHHHCCCCEEEEECCC--------CC--HHHHHHHHHHHHHcCCEEECCCCceEEc
Confidence 4778888889999999887761 11 1123345567889999999999988754
No 89
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=46.86 E-value=93 Score=26.63 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=40.9
Q ss_pred CCceEEEEEeecCCCch--------HHHHHHHcCCcEEEeeccCCCCCCCCCCCcHH-HHHHHHHHHHhhcCceEEEEcC
Q 027467 71 KFAKIGVAICWDQWFPE--------AARAMVLQGAEILFYPTAIGSEPQDDGLDSRD-HWRRVMQGHAGANVVPLVASNR 141 (223)
Q Consensus 71 ~~~~ig~~IC~D~~~pe--------~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~-~~~~~~~~rA~e~~~~vv~an~ 141 (223)
.+--++.+||-|..|-| +...+...++|++|.--+.+.. +.. .-..+..+..-+.+++++.+-.
T Consensus 47 ~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnag-------rYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 47 DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAG-------RYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCc-------hHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 46689999999999853 2333456899999985443221 111 1123444455678888887654
Q ss_pred CC
Q 027467 142 IG 143 (223)
Q Consensus 142 ~G 143 (223)
.-
T Consensus 120 ~E 121 (349)
T PF07355_consen 120 EE 121 (349)
T ss_pred cc
Confidence 43
No 90
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=46.78 E-value=29 Score=25.35 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=13.1
Q ss_pred EEEEEECCCCceeeeee
Q 027467 26 NSIAIIDADGSDLGLYR 42 (223)
Q Consensus 26 Ns~~vi~~~G~i~~~y~ 42 (223)
.+.++||++|+|+..|.
T Consensus 121 ~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 121 RISFLIDADGKIEHVFD 137 (154)
T ss_pred eEEEEECCCCEEEEEEc
Confidence 46789999998876654
No 91
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=43.92 E-value=93 Score=24.85 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=15.9
Q ss_pred hHHHHHHHcCCcEEEeeccCC
Q 027467 87 EAARAMVLQGAEILFYPTAIG 107 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~ 107 (223)
+..+.++++|+|||+.|-.+.
T Consensus 23 ~~i~~A~~~gadlvvfPE~~l 43 (261)
T cd07570 23 EAIREAKAQGADLVVFPELSL 43 (261)
T ss_pred HHHHHHHHcCCCEEEccchhc
Confidence 345566778999999998753
No 92
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=42.78 E-value=33 Score=20.82 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=18.1
Q ss_pred HHHHHhhcCceEEEEcCCCccccccccCCcceeeeeeeEEECCCCCeeeecC
Q 027467 125 MQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGPTGEIVAAAD 176 (223)
Q Consensus 125 ~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~S~iv~p~G~il~~~~ 176 (223)
.+++++.+|.++-.... .|...+++|+|+.++-+.
T Consensus 9 ~ea~~l~~Gr~l~~~~~-----------------~g~~aa~~pdG~lvAL~~ 43 (56)
T PF09142_consen 9 EEARDLRHGRRLPAAGP-----------------PGPVAAFAPDGRLVALLE 43 (56)
T ss_dssp HHHHHHHTT---B----------------------S-EEEE-TTS-EEEEEE
T ss_pred HHHHHHhCCCccCCCCC-----------------CceEEEECCCCcEEEEEE
Confidence 45566777877755422 347789999999998874
No 93
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=42.47 E-value=1.5e+02 Score=25.32 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=39.0
Q ss_pred cCCcEEEeeccCCCC-CCCCC--C----CcHHHHHHHHHHHHhhcCceEEEEcCCCccccccccCCcceeeeeeeEEECC
Q 027467 95 QGAEILFYPTAIGSE-PQDDG--L----DSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQITFYGNSFIAGP 167 (223)
Q Consensus 95 ~gadlii~ps~~~~~-~~~~~--~----~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~~~~~G~S~iv~p 167 (223)
.|+|||+.|=.+... .++.. . .-...+.......|.+++++++.. .+|....+. . .-.+.-...+++|
T Consensus 50 ~gadLVVfPE~~l~G~~y~~~~~~~~a~~i~g~~~~~l~~~A~~~~i~~v~~-i~ge~~~~~---~-~~~~yNta~vi~~ 124 (345)
T PRK13286 50 PGMDLVIFPEYSTHGIMYDRQEMYETASTIPGEETAIFAEACRKAKVWGVFS-LTGERHEEH---P-RKAPYNTLILIND 124 (345)
T ss_pred CCCcEEEcCCccccCCCcChHHHHHhcccCCCHHHHHHHHHHHHcCEEEEEe-ccccccccC---C-CCceeEEEEEECC
Confidence 489999999875432 11110 0 001122233455778888876543 223211000 0 1124457788899
Q ss_pred CCCeeeec
Q 027467 168 TGEIVAAA 175 (223)
Q Consensus 168 ~G~il~~~ 175 (223)
+|+++..-
T Consensus 125 ~G~i~~~Y 132 (345)
T PRK13286 125 KGEIVQKY 132 (345)
T ss_pred CCeEEEEE
Confidence 99876543
No 94
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=42.20 E-value=57 Score=23.04 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=14.8
Q ss_pred eEEEEEECCCCceeeeeecc
Q 027467 25 YNSIAIIDADGSDLGLYRKS 44 (223)
Q Consensus 25 yNs~~vi~~~G~i~~~y~K~ 44 (223)
.-+.+++|++|+++..+.-.
T Consensus 110 ~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 110 ARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred eEEEEEECCCCcEEEEEecC
Confidence 44789999999987665544
No 95
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=41.99 E-value=1.6e+02 Score=23.60 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=38.9
Q ss_pred hHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHH-----------HHHHHHHHHHhhcCceEEEEcCCCccccccccCCcc
Q 027467 87 EAARAMVLQGAEILFYPTAIGSEPQDDGLDSRD-----------HWRRVMQGHAGANVVPLVASNRIGKEIIETEHGKSQ 155 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~-----------~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~g~~~ 155 (223)
++.+.++.+|+|+|+.|=.+... +... ...+ .........|.+++++++.- ..-.. +
T Consensus 23 ~~i~~a~~~g~dlvvfPE~~l~g-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~G-~~~~~---------~ 90 (268)
T cd07580 23 ELIREAADAGANLVVLPELANTG-YVFE-SRDEAFALAEEVPDGASTRAWAELAAELGLYIVAG-FAERD---------G 90 (268)
T ss_pred HHHHHHHHcCCCEEEcCCccccc-CCCC-CHHHHHHhhccCCCCchHHHHHHHHHHcCcEEEee-ccccc---------C
Confidence 34455567899999999875431 1111 0000 11223344577888877643 21111 1
Q ss_pred eeeeeeeEEECCCCCe
Q 027467 156 ITFYGNSFIAGPTGEI 171 (223)
Q Consensus 156 ~~~~G~S~iv~p~G~i 171 (223)
..++-...+++++|.+
T Consensus 91 ~~~yNs~~vi~~~g~~ 106 (268)
T cd07580 91 DRLYNSAVLVGPDGVI 106 (268)
T ss_pred CceEEEEEEECCCCcE
Confidence 2345577888888853
No 96
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=41.94 E-value=1.8e+02 Score=23.52 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=16.8
Q ss_pred hHHHHHHHcCCcEEEeeccCCC
Q 027467 87 EAARAMVLQGAEILFYPTAIGS 108 (223)
Q Consensus 87 e~~~~~~~~gadlii~ps~~~~ 108 (223)
++.+..+++|||||+.|=.+..
T Consensus 26 ~~i~~a~~~ga~LvvfPEl~~t 47 (274)
T COG0388 26 RLIREAAARGADLVVFPELFLT 47 (274)
T ss_pred HHHHHHHHcCCCEEECCccccc
Confidence 3455666789999999998754
No 97
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=41.45 E-value=53 Score=25.37 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=11.4
Q ss_pred eeEEEEEECCCCcee
Q 027467 24 HYNSIAIIDADGSDL 38 (223)
Q Consensus 24 ~yNs~~vi~~~G~i~ 38 (223)
.|-+.++|||+|++.
T Consensus 126 ~~r~~fiID~~G~i~ 140 (199)
T PTZ00253 126 AYRGLFIIDPKGMLR 140 (199)
T ss_pred eEEEEEEECCCCEEE
Confidence 467788888888764
No 98
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=41.28 E-value=62 Score=19.61 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=21.6
Q ss_pred eeeEEECCCCCeeeecCC----CCceEEEEEechh
Q 027467 160 GNSFIAGPTGEIVAAADD----KEEAVLVAQFDLD 190 (223)
Q Consensus 160 G~S~iv~p~G~il~~~~~----~~e~~l~~~i~l~ 190 (223)
+.++.+.|+|+|+..... ......++.++.+
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~D 37 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNAD 37 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCC
Confidence 478888999998877641 3456677776654
No 99
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=40.34 E-value=70 Score=25.06 Aligned_cols=56 Identities=25% Similarity=0.277 Sum_probs=38.9
Q ss_pred EEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCC
Q 027467 75 IGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIG 143 (223)
Q Consensus 75 ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G 143 (223)
..+.+|-|.+.|+..+.....|+++|...+.... . .. ....+.++++++|..-.-|
T Consensus 71 ~~~plSIDT~~~~v~~~aL~~g~~~ind~~~~~~---------~---~~-~~~l~a~~~~~vV~m~~~~ 126 (210)
T PF00809_consen 71 PDVPLSIDTFNPEVAEAALKAGADIINDISGFED---------D---PE-MLPLAAEYGAPVVLMHSDG 126 (210)
T ss_dssp TTSEEEEEESSHHHHHHHHHHTSSEEEETTTTSS---------S---TT-HHHHHHHHTSEEEEESESS
T ss_pred CCeEEEEECCCHHHHHHHHHcCcceEEecccccc---------c---ch-hhhhhhcCCCEEEEEeccc
Confidence 5789999999999999888889999999776211 0 11 2223446787877665443
No 100
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=40.08 E-value=1.9e+02 Score=24.39 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=44.6
Q ss_pred ceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCC
Q 027467 73 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIG 143 (223)
Q Consensus 73 ~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G 143 (223)
-+|.++-++=-.-+++.+.+...|++-||.-.. + ....+ ..|....+ ++.+.|++||.+.++.
T Consensus 210 ~~V~il~~~pG~~~~~l~~~~~~g~~GiVl~~~-G-----~Gn~p-~~~~~~l~-~a~~~gi~VV~~Sq~~ 272 (323)
T cd00411 210 PKVGILYLYPGISAEAVRAFLRAGYKGIVLAGY-G-----AGNVP-TDLIDELE-EAAERGVVVVNSTQCE 272 (323)
T ss_pred CCEEEEEECCCCCHHHHHHHHhCCCCEEEEEeE-C-----CCCCC-HHHHHHHH-HHHHCCCEEEEecCCC
Confidence 478888888888888888888889888887544 1 11122 23444333 6788999999999875
No 101
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=39.52 E-value=2e+02 Score=24.29 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=45.4
Q ss_pred ceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCc
Q 027467 73 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGK 144 (223)
Q Consensus 73 ~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~ 144 (223)
-+|.++-++--..+++.+.+...|++-||.-..- ....+. .|.... .++.+.+++||.+.+++.
T Consensus 212 ~~V~il~~~pG~~~~~l~~~~~~~~~GlVl~~~G------~Gn~p~-~~~~~l-~~a~~~gipVV~~sq~~~ 275 (323)
T smart00870 212 PKVAIVKAYPGMDAELLDALLDSGAKGLVLEGTG------AGNVPP-DLLEAL-KEALERGIPVVRTSRCLN 275 (323)
T ss_pred CcEEEEEeCCCCCHHHHHHHHhCCCCEEEEEeeC------CCCCCH-HHHHHH-HHHHHCCCEEEEeccCCC
Confidence 4899998999889999888888898888875541 111122 333333 366788999999999763
No 102
>smart00037 CNX Connexin homologues. Connexin channels participate in the regulation of signaling between developing and differentiated cell types.
Probab=38.75 E-value=15 Score=19.84 Aligned_cols=10 Identities=50% Similarity=1.135 Sum_probs=8.1
Q ss_pred EEeecCCCch
Q 027467 78 AICWDQWFPE 87 (223)
Q Consensus 78 ~IC~D~~~pe 87 (223)
-+|||..||-
T Consensus 21 nvCyD~~fPi 30 (34)
T smart00037 21 NVCYDQAFPI 30 (34)
T ss_pred ceeccccccC
Confidence 3799999984
No 103
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=38.50 E-value=68 Score=22.91 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=14.7
Q ss_pred eEEEEEECCCCceeeeeecc
Q 027467 25 YNSIAIIDADGSDLGLYRKS 44 (223)
Q Consensus 25 yNs~~vi~~~G~i~~~y~K~ 44 (223)
.-+.++||++|+|+..+...
T Consensus 110 ~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 110 ARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred ceEEEEEcCCCeEEEEEECC
Confidence 34789999999987665533
No 104
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=36.85 E-value=3.2e+02 Score=24.68 Aligned_cols=68 Identities=21% Similarity=0.336 Sum_probs=42.4
Q ss_pred EEEEECCCCceeeeeeccCCCCCCCCcccccccCCCCCcceEe-eCCceEEEEEeecCCCchHHHHHHHcCCcEEEeecc
Q 027467 27 SIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQ-TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 105 (223)
Q Consensus 27 s~~vi~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~-~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~ 105 (223)
...+++.+|++++.-.+..+.....|.. ...+ -...++|+++...-...+.+..+.+.|+|+|..-++
T Consensus 194 ~LPVVd~~g~liGIIT~~DIl~~~~~p~-----------a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag~d~i~id~a 262 (495)
T PTZ00314 194 KLPIVNDNGELVALVSRSDLKKNRGYPN-----------ASLDSNGQLLVGAAISTRPEDIERAAALIEAGVDVLVVDSS 262 (495)
T ss_pred eEEEEcCCCcEEEEEEehHhhhcccCch-----------hhhccCCCEEEEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence 3566777777777766665532111100 0111 234588888876544467788899999999998664
No 105
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=36.77 E-value=2.2e+02 Score=22.93 Aligned_cols=59 Identities=17% Similarity=0.090 Sum_probs=33.6
Q ss_pred EEEEEeecCCCchHHHHHHHcCCcEEEe--eccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEE
Q 027467 75 IGVAICWDQWFPEAARAMVLQGAEILFY--PTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 139 (223)
Q Consensus 75 ig~~IC~D~~~pe~~~~~~~~gadlii~--ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~a 139 (223)
=++++|.|.. +++.+.+..+|+|+||. |..|.+ ...-.... .... ...++++++.|.++
T Consensus 37 ~~I~~alD~t-~~vi~~Ai~~~~dlIitHHP~~f~~--~~~~~~~~-~~~~--~~~li~~~I~vy~~ 97 (249)
T TIGR00486 37 KKVVVAVDAS-ESVADEAVRLGADLIITHHPLIWKP--LKRLIRGI-KPGR--LKILLQNDISLYSA 97 (249)
T ss_pred CEEEEEecCC-HHHHHHHHHCCCCEEEEcCccccCC--cccccCCC-HHHH--HHHHHHCCCeEEEe
Confidence 3477788874 55667778889999996 544432 11110011 1111 23467788777655
No 106
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=34.98 E-value=1.3e+02 Score=19.69 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=22.4
Q ss_pred HHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceee
Q 027467 3 ELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLG 39 (223)
Q Consensus 3 ~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~ 39 (223)
+.+++.++.++.+.-....+ ..++++.||+|..+.
T Consensus 72 ~~l~~~G~~~~~~~~~~~~g--~~~~~~~DPdG~~ie 106 (108)
T PF12681_consen 72 ERLKELGAEIVTEPRDDPWG--QRSFYFIDPDGNRIE 106 (108)
T ss_dssp HHHHHTTSEEEEEEEEETTS--EEEEEEE-TTS-EEE
T ss_pred HHHHHCCCeEeeCCEEcCCC--eEEEEEECCCCCEEE
Confidence 45677788887755443333 368999999998764
No 107
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=34.93 E-value=65 Score=20.04 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=24.1
Q ss_pred HHHHHcCcEEeeeeeeecCCceeEEEEEECCCCcee
Q 027467 3 ELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDL 38 (223)
Q Consensus 3 ~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~ 38 (223)
+|..+-.+.++-|+.- ..++.|++.++++.+.++.
T Consensus 23 ~Ll~~gkT~~ikGF~S-K~Gk~F~A~L~l~~~~~v~ 57 (62)
T PF13342_consen 23 ELLEKGKTGLIKGFKS-KKGKPFDAYLVLDDDKKVK 57 (62)
T ss_pred HHHHcCCccCccCccc-CCCCEEeEEEEEcCCCeEE
Confidence 3444455666667755 4678899999999777653
No 108
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=34.52 E-value=1.6e+02 Score=25.58 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=39.0
Q ss_pred EEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCC-----------------CCcHHHHHHHHH----HHHhhcCceE
Q 027467 78 AICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDG-----------------LDSRDHWRRVMQ----GHAGANVVPL 136 (223)
Q Consensus 78 ~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~-----------------~~~~~~~~~~~~----~rA~e~~~~v 136 (223)
++-.|...++...+++.+ +.+|++... |+..- .....+|...++ .+|.|+|+||
T Consensus 66 i~i~D~~n~~Sl~emak~-~~vivN~vG----PyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYI 140 (423)
T KOG2733|consen 66 ILIADSANEASLDEMAKQ-ARVIVNCVG----PYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYI 140 (423)
T ss_pred EEEecCCCHHHHHHHHhh-hEEEEeccc----cceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEE
Confidence 444578888888888865 999998653 22111 112344554443 3799999999
Q ss_pred EEEcCCC
Q 027467 137 VASNRIG 143 (223)
Q Consensus 137 v~an~~G 143 (223)
|.|...-
T Consensus 141 VsaCGfD 147 (423)
T KOG2733|consen 141 VSACGFD 147 (423)
T ss_pred EeecccC
Confidence 9886543
No 109
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=34.36 E-value=1.8e+02 Score=25.65 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=42.3
Q ss_pred EeeCCceEEEEEeecCCCch--------HHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHH-HHHHHHHHHhhcCceEEE
Q 027467 68 FQTKFAKIGVAICWDQWFPE--------AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDH-WRRVMQGHAGANVVPLVA 138 (223)
Q Consensus 68 ~~~~~~~ig~~IC~D~~~pe--------~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~-~~~~~~~rA~e~~~~vv~ 138 (223)
+...+--++.+||-|.+|-| +...+...++|+++.--+.+.. +... -..+..+..-+.+++++.
T Consensus 40 ~~~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNag-------rYG~acg~va~aV~e~~~IP~vt 112 (431)
T TIGR01917 40 IEEDAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAG-------RYGMAAGAITKAVQDELGIKAFT 112 (431)
T ss_pred hcCCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCc-------cHHHHHHHHHHHHHHhhCCCeEE
Confidence 34456689999999999864 2333457899999985443221 1111 112344445567888887
Q ss_pred EcCCC
Q 027467 139 SNRIG 143 (223)
Q Consensus 139 an~~G 143 (223)
+-..-
T Consensus 113 aMy~E 117 (431)
T TIGR01917 113 AMYEE 117 (431)
T ss_pred Eeccc
Confidence 76543
No 110
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=34.18 E-value=1.9e+02 Score=25.62 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=42.4
Q ss_pred EeeCCceEEEEEeecCCCch--------HHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHH-HHHHHHHHHhhcCceEEE
Q 027467 68 FQTKFAKIGVAICWDQWFPE--------AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDH-WRRVMQGHAGANVVPLVA 138 (223)
Q Consensus 68 ~~~~~~~ig~~IC~D~~~pe--------~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~-~~~~~~~rA~e~~~~vv~ 138 (223)
+...+--++.+||-|.+|-| +...+...++|+++.--+.+.. +... -..+..+..-+.+++++.
T Consensus 40 l~~~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNag-------rYG~acg~va~aV~e~~~IP~vt 112 (431)
T TIGR01918 40 LEEDAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAG-------RYGVACGEICKVVQDKLNVPAVT 112 (431)
T ss_pred hccCCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCc-------cHHHHHHHHHHHHHHhhCCCeEE
Confidence 34456689999999999865 2333457899999985443221 1111 112344445567888887
Q ss_pred EcCCC
Q 027467 139 SNRIG 143 (223)
Q Consensus 139 an~~G 143 (223)
+-..-
T Consensus 113 ~My~E 117 (431)
T TIGR01918 113 SMYVE 117 (431)
T ss_pred Eeccc
Confidence 76543
No 111
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=33.81 E-value=1.1e+02 Score=25.54 Aligned_cols=53 Identities=11% Similarity=0.024 Sum_probs=38.4
Q ss_pred CCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccc
Q 027467 84 WFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEI 146 (223)
Q Consensus 84 ~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~ 146 (223)
.-|+..+.+...|+..+++.++- |. . +-.......|.++++.++..|..|...
T Consensus 77 ~v~~~l~e~~~~gvk~avI~s~G--------f~-~-~~~~~l~~~a~~~girvlGPNc~Gi~~ 129 (291)
T PRK05678 77 FAADAILEAIDAGIDLIVCITEG--------IP-V-LDMLEVKAYLERKKTRLIGPNCPGIIT 129 (291)
T ss_pred HHHHHHHHHHHCCCCEEEEECCC--------CC-H-HHHHHHHHHHHHcCCEEECCCCCcccc
Confidence 34788888999999998887761 11 1 111245667889999999999988643
No 112
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=33.06 E-value=67 Score=26.41 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=28.6
Q ss_pred eCCceEEEEEeecCCCchHHHHHHHcCCcEEEeecc
Q 027467 70 TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 105 (223)
Q Consensus 70 ~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~ 105 (223)
..|.||+..+=.+.-.--+.+.+...||++.+..++
T Consensus 41 l~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sN 76 (268)
T PF05221_consen 41 LKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSN 76 (268)
T ss_dssp TTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESS
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCC
Confidence 468899987767776777888999999999999876
No 113
>PHA01633 putative glycosyl transferase group 1
Probab=32.20 E-value=1.5e+02 Score=25.29 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=24.9
Q ss_pred cCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCcc
Q 027467 95 QGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKE 145 (223)
Q Consensus 95 ~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~ 145 (223)
+.+|+++.||.+ .++ -+...-|...|+|||+++..|..
T Consensus 222 ~~aDifV~PS~~--Egf-----------GlvlLEAMA~G~PVVas~~~~l~ 259 (335)
T PHA01633 222 GAMDFTIVPSGT--EGF-----------GMPVLESMAMGTPVIHQLMPPLD 259 (335)
T ss_pred HhCCEEEECCcc--ccC-----------CHHHHHHHHcCCCEEEccCCCce
Confidence 369999999873 111 12334456689999988776543
No 114
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=32.18 E-value=1.6e+02 Score=20.48 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=23.9
Q ss_pred HHHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeeeecc
Q 027467 3 ELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKS 44 (223)
Q Consensus 3 ~~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~ 44 (223)
+.+++.++.++..... .+.....++++.||+|..+..+...
T Consensus 78 ~~l~~~G~~i~~~~~~-~~~~~~~~~~~~DPdG~~iei~~~~ 118 (131)
T cd08343 78 DRLAANGIQIEFGPGR-HGPGNNLFLYFRDPDGNRVELSAEM 118 (131)
T ss_pred HHHHHcCCeeEECCCc-cCCCCcEEEEEECCCCCEEEEEcCC
Confidence 3456677776643222 1212245678999999887555444
No 115
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=31.80 E-value=2.7e+02 Score=24.67 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=39.4
Q ss_pred CCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccc
Q 027467 84 WFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEI 146 (223)
Q Consensus 84 ~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~ 146 (223)
..++..+.+...|+..+++.+.- ..... ......+......|.++++.++..|..|...
T Consensus 76 ~~~~~l~e~~~~gv~~~vi~s~g---f~e~g-~~g~~~~~~l~~~a~~~girvlGPnc~G~~~ 134 (447)
T TIGR02717 76 YVPQVVEECGEKGVKGAVVITAG---FKEVG-EEGAELEQELVEIARKYGMRLLGPNCLGIIN 134 (447)
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---ccccC-cchHHHHHHHHHHHHHcCCEEEecCeeeEec
Confidence 34788888999999988876651 11111 1112344556667889999999999988643
No 116
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=31.60 E-value=1e+02 Score=22.95 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=12.9
Q ss_pred EEEEECCCCceeeeee
Q 027467 27 SIAIIDADGSDLGLYR 42 (223)
Q Consensus 27 s~~vi~~~G~i~~~y~ 42 (223)
+.++||++|+|+..+.
T Consensus 133 ~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 133 AVFVLDENNKVVYSEL 148 (167)
T ss_pred EEEEECCCCeEEEEEE
Confidence 7899999999866554
No 117
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=31.33 E-value=98 Score=26.83 Aligned_cols=59 Identities=19% Similarity=0.159 Sum_probs=42.4
Q ss_pred eeCCceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEE
Q 027467 69 QTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVA 138 (223)
Q Consensus 69 ~~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~ 138 (223)
..+|.||+..+=.+.-.--+...|...||++.+.+.+ |.. ..+.++.+.+...|++|..
T Consensus 42 PlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cN----plS-------TqD~vaaAl~~~~GipVfA 100 (420)
T COG0499 42 PLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCN----PLS-------TQDDVAAALAAKEGIPVFA 100 (420)
T ss_pred CCCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCC----CCc-------ccHHHHHHHhhccCceEEE
Confidence 3578899999988888888899999999999988766 111 1123445555566777754
No 118
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=30.71 E-value=71 Score=18.05 Aligned_cols=13 Identities=46% Similarity=0.501 Sum_probs=7.2
Q ss_pred eeeEEECCCCCee
Q 027467 160 GNSFIAGPTGEIV 172 (223)
Q Consensus 160 G~S~iv~p~G~il 172 (223)
|.|.|+.|+|+..
T Consensus 1 G~SGii~~dG~~~ 13 (40)
T PF08140_consen 1 GPSGIITPDGTNV 13 (40)
T ss_pred CCCceECCCCCEE
Confidence 3455666666544
No 119
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=30.45 E-value=1e+02 Score=20.89 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=13.4
Q ss_pred eEEEEEECCCCceeeeeec
Q 027467 25 YNSIAIIDADGSDLGLYRK 43 (223)
Q Consensus 25 yNs~~vi~~~G~i~~~y~K 43 (223)
.+++++.||+|..+..+.+
T Consensus 99 ~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 99 QDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred cceEEEECCCCCEEEEEEe
Confidence 4568888888887755543
No 120
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=30.44 E-value=81 Score=21.64 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=31.9
Q ss_pred CCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEE
Q 027467 84 WFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 139 (223)
Q Consensus 84 ~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~a 139 (223)
..|++...+.+..+|+|++... .. .. . .-....|..|.++++|++.+
T Consensus 55 ~~~~i~~~i~~~~id~vIn~~~-~~---~~--~---~~~~~iRR~Av~~~ipl~T~ 101 (110)
T cd01424 55 GRPNIVDLIKNGEIQLVINTPS-GK---RA--I---RDGFSIRRAALEYKVPYFTT 101 (110)
T ss_pred CchhHHHHHHcCCeEEEEECCC-CC---cc--C---ccHHHHHHHHHHhCCCEEec
Confidence 4578888888889999999543 11 10 1 11235778899999999843
No 121
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=29.38 E-value=1.1e+02 Score=20.56 Aligned_cols=37 Identities=11% Similarity=0.022 Sum_probs=18.0
Q ss_pred HHHHcCcEEeeeeeeecCCceeEEEEEECCCCceeee
Q 027467 4 LAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGL 40 (223)
Q Consensus 4 ~A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~ 40 (223)
.+++.++.+..+-.......-...+.+.||+|..+..
T Consensus 78 ~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel 114 (120)
T cd08362 78 QVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEF 114 (120)
T ss_pred HHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEE
Confidence 3445566554332111111113456788888876643
No 122
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=29.25 E-value=57 Score=23.84 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.2
Q ss_pred EEEEECCCCceeeeee
Q 027467 27 SIAIIDADGSDLGLYR 42 (223)
Q Consensus 27 s~~vi~~~G~i~~~y~ 42 (223)
+.++||++|+++.+|.
T Consensus 125 ttflId~~G~i~~~~~ 140 (152)
T cd00340 125 TKFLVDRDGEVVKRFA 140 (152)
T ss_pred EEEEECCCCcEEEEEC
Confidence 6899999999976554
No 123
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=29.01 E-value=83 Score=23.52 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=13.3
Q ss_pred EEEEEECCCCceeeeee
Q 027467 26 NSIAIIDADGSDLGLYR 42 (223)
Q Consensus 26 Ns~~vi~~~G~i~~~y~ 42 (223)
-+.++||++|.++..+.
T Consensus 121 p~~~lID~~G~I~~~~~ 137 (173)
T cd03015 121 RGTFIIDPEGIIRHITV 137 (173)
T ss_pred eEEEEECCCCeEEEEEe
Confidence 37899999998866653
No 124
>PRK13191 putative peroxiredoxin; Provisional
Probab=28.76 E-value=1.1e+02 Score=24.14 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=8.9
Q ss_pred eEEEEEECCCCcee
Q 027467 25 YNSIAIIDADGSDL 38 (223)
Q Consensus 25 yNs~~vi~~~G~i~ 38 (223)
.-+.++|||+|.|.
T Consensus 124 ~r~tfIID~~G~Ir 137 (215)
T PRK13191 124 VRAVFIVDDKGTVR 137 (215)
T ss_pred eEEEEEECCCCEEE
Confidence 44567777777653
No 125
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=28.31 E-value=3.3e+02 Score=23.35 Aligned_cols=63 Identities=22% Similarity=0.208 Sum_probs=44.7
Q ss_pred ceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCC
Q 027467 73 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIG 143 (223)
Q Consensus 73 ~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G 143 (223)
-|+.++-++=-.-+++.+.+...|++=||.-..- ....+ ..|.... .++.+.|++||.+.+++
T Consensus 239 p~V~il~~~pG~~~~ll~~~~~~g~~GlVl~g~G------~Gn~p-~~~~~al-~~a~~~GipVV~~Sr~~ 301 (349)
T TIGR00520 239 PKVDIIYAYQNAPPLIVNAVLDAGAKGIVLAGVG------NGSLS-AAGLKVN-ETAAKLGVPIVRSSRVP 301 (349)
T ss_pred CcEEEEEECCCCCHHHHHHHHhCCCCEEEEEeEC------CCCCC-HHHHHHH-HHHHHCCCEEEEEccCC
Confidence 4788888887777899998888899988885541 11112 2344333 36778899999999976
No 126
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=27.71 E-value=2.5e+02 Score=23.49 Aligned_cols=53 Identities=15% Similarity=0.058 Sum_probs=36.5
Q ss_pred CchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccc
Q 027467 85 FPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEI 146 (223)
Q Consensus 85 ~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~ 146 (223)
.|+..+.+..+|+..++..++- |...+ -+......|.++++.++..|..|...
T Consensus 82 v~~al~e~~~~Gvk~~vIisaG--------f~e~g-~~~~~~~~ar~~girviGPNc~Gii~ 134 (300)
T PLN00125 82 AAAAILEAMEAELDLVVCITEG--------IPQHD-MVRVKAALNRQSKTRLIGPNCPGIIK 134 (300)
T ss_pred HHHHHHHHHHcCCCEEEEECCC--------CCccc-HHHHHHHHHhhcCCEEECCCCceeec
Confidence 4677788888999988887651 11111 23334446788999999999998754
No 127
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=27.36 E-value=4e+02 Score=23.39 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=45.0
Q ss_pred ceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCC
Q 027467 73 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIG 143 (223)
Q Consensus 73 ~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G 143 (223)
-+|.++-++=-..+++.+.+...|++-||.-.. + ....+ ..|.... .+|.+.|++||.+.++.
T Consensus 276 ~~V~ll~~~pG~d~~~l~~~~~~g~~GiVleg~-G-----~G~vp-~~~~~~l-~~a~~~GipVV~tSqc~ 338 (404)
T TIGR02153 276 EKVALVKFYPGISPEIIEFLVDKGYKGIVIEGT-G-----LGHVS-EDWIPSI-KRATDDGVPVVMTSQCL 338 (404)
T ss_pred CcEEEEEeCCCCCHHHHHHHHhCCCCEEEEeeE-C-----CCCCC-HHHHHHH-HHHHHCCCEEEEeCCCC
Confidence 479998888888899999888889888877443 1 11112 2344333 36778999999999986
No 128
>PRK11096 ansB L-asparaginase II; Provisional
Probab=27.20 E-value=3.6e+02 Score=23.08 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=44.3
Q ss_pred ceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCC
Q 027467 73 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIG 143 (223)
Q Consensus 73 ~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G 143 (223)
-++.++-++=-.-+++.+.+...|++-||.-.. +.. ..+ ..|.... .+|.++|++||.+.++.
T Consensus 233 ~~V~il~~~pG~~~~~l~~~l~~~~~GiVl~g~-G~G-----n~~-~~~~~~l-~~a~~~GipVV~~Sqc~ 295 (347)
T PRK11096 233 PKVGIVYNYANASDLPAKALVDAGYDGIVSAGV-GNG-----NLY-KTVFDTL-ATAAKNGVAVVRSSRVP 295 (347)
T ss_pred CeEEEEEeCCCCCHHHHHHHHhccCCEEEEEeE-CCC-----CCC-HHHHHHH-HHHHHCCCEEEEeCCCC
Confidence 478888888888899999888888888876332 211 112 2343333 46788999999999986
No 129
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=26.97 E-value=1.5e+02 Score=26.24 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=29.3
Q ss_pred CHHHHHHcCcEEe-eeeeeecCC--------ceeEEEEEECCCCceeeeee
Q 027467 1 MQELAKELGVVMP-VSFFEEANN--------AHYNSIAIIDADGSDLGLYR 42 (223)
Q Consensus 1 l~~~A~~~~i~i~-~G~~~~~~~--------~~yNs~~vi~~~G~i~~~y~ 42 (223)
|.++||+.++.++ +|...+++. +.-.+.+.| +|+--..||
T Consensus 202 L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmVDtVlyF--EGd~~~~~R 250 (456)
T COG1066 202 LMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMVDTVLYF--EGDRHSRYR 250 (456)
T ss_pred HHHHHHHcCCeEEEEEEEcccccccCchheeeeeeEEEEE--eccCCCcee
Confidence 4689999999887 699888763 678888888 444334444
No 130
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=26.46 E-value=4.2e+02 Score=22.80 Aligned_cols=63 Identities=21% Similarity=0.207 Sum_probs=45.8
Q ss_pred ceEEEEEeecCCCchHHH-HHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCC
Q 027467 73 AKIGVAICWDQWFPEAAR-AMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIG 143 (223)
Q Consensus 73 ~~ig~~IC~D~~~pe~~~-~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G 143 (223)
.||.++.+|--.-+++.+ .+.+.|++-|+.-+. +. .....+.+..+ .++.+.|++||.+.++.
T Consensus 230 ~~V~ii~~ypG~~~~~i~~a~~~~g~~GiVie~~-G~-----G~~~~~~~~~i--~~~~~~gi~VV~sSr~~ 293 (351)
T COG0252 230 PKVVIIKYYPGLSSSLIDSALLSSGAKGLVLEGT-GS-----GNVTPALIESI--ERASKRGIPVVYSSRCL 293 (351)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHhcCCCEEEEEEE-CC-----CCCChHHHHHH--HHHHHCCCeEEEEeccC
Confidence 799999999999998877 566899999888654 11 11233344333 35778899999999875
No 131
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=26.16 E-value=67 Score=23.45 Aligned_cols=14 Identities=7% Similarity=0.418 Sum_probs=11.9
Q ss_pred EEEECCCCceeeee
Q 027467 28 IAIIDADGSDLGLY 41 (223)
Q Consensus 28 ~~vi~~~G~i~~~y 41 (223)
.++||++|+++..|
T Consensus 123 tflID~~G~v~~~~ 136 (153)
T TIGR02540 123 KYLVNPEGQVVKFW 136 (153)
T ss_pred EEEEcCCCcEEEEE
Confidence 89999999987554
No 132
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=26.15 E-value=3.5e+02 Score=22.62 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=39.6
Q ss_pred CceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCc
Q 027467 72 FAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGK 144 (223)
Q Consensus 72 ~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~ 144 (223)
.-+|.++-|+=-..+++.+.+. .+++-+|.-..- ... ....|... -.+|.+.+++||.++++..
T Consensus 201 ~~~V~il~~~pG~~~~~l~~~~-~~~~GlVl~~~G------~Gn-~~~~~~~~-l~~a~~~gipVV~~sr~~~ 264 (313)
T PF00710_consen 201 LPRVAILYLYPGMDAELLDAAL-AGAKGLVLEGYG------AGN-VPPALLEA-LARAVERGIPVVVTSRCPS 264 (313)
T ss_dssp -S-EEEEE--TT--THHHHHHH-TT-SEEEEEEBT------TTB-SSHHHHHH-HHHHHHTTSEEEEEESSSC
T ss_pred CCCEEEEEECCCCCHHHHHHHh-ccCCEEEEeccC------CCC-CCHHHHHH-HHHHHhcCceEEEeccccc
Confidence 4589999999888889888888 889999986651 111 12333332 2456688999999998763
No 133
>PLN02494 adenosylhomocysteinase
Probab=26.04 E-value=1.5e+02 Score=26.73 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=31.5
Q ss_pred eeCCceEEEEEeecCCCchHHHHHHHcCCcEEEeecc
Q 027467 69 QTKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 105 (223)
Q Consensus 69 ~~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~ 105 (223)
...|.||+..+=.+.-.--+.+.+...||++.+..++
T Consensus 43 pl~G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~~~N 79 (477)
T PLN02494 43 PFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCN 79 (477)
T ss_pred CCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEcCC
Confidence 3578899999888888888899999999999977665
No 134
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=25.12 E-value=1.2e+02 Score=21.28 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=14.4
Q ss_pred EEEEECCCCceeeeeeccC
Q 027467 27 SIAIIDADGSDLGLYRKSH 45 (223)
Q Consensus 27 s~~vi~~~G~i~~~y~K~~ 45 (223)
.+++++++|+++..+|...
T Consensus 4 ~v~i~~~~~~iLl~~R~~~ 22 (126)
T cd04697 4 YIFVFNSEGKLCVHKRTLT 22 (126)
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 4788899999987666544
No 135
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=25.11 E-value=1.7e+02 Score=25.82 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=28.8
Q ss_pred eCCceEEEEEeecCCCchHHHHHHHcCCcEEEeecc
Q 027467 70 TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 105 (223)
Q Consensus 70 ~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~ 105 (223)
.+|.||+..+=.+...--+.+.+...||++.+..++
T Consensus 34 ~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~n 69 (413)
T cd00401 34 LKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCN 69 (413)
T ss_pred CCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCC
Confidence 467888888877777777888888899998887665
No 136
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=24.97 E-value=4.7e+02 Score=23.09 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=45.1
Q ss_pred ceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCC
Q 027467 73 AKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIG 143 (223)
Q Consensus 73 ~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G 143 (223)
-|+.++-++=-..+++.+.+...|++-||.-.. + ....+ ..|.... .+|.+.|++||.+.++.
T Consensus 289 ~~V~ll~~~PG~~~~~l~~~~~~g~~GiVleg~-G-----~Gnvp-~~~~~~l-~~a~~~Gi~VV~tSqc~ 351 (419)
T PRK04183 289 EKVALIKFYPGMDPEILDFYVDKGYKGIVIEGT-G-----LGHVS-TDLIPSI-KRATDDGIPVVMTSQCL 351 (419)
T ss_pred CcEEEEEEcCCCCHHHHHHHHhCCCCEEEEEeE-C-----CCCCC-HHHHHHH-HHHHHCCCEEEEeCCCC
Confidence 478888888888899998888889998887543 1 11112 2344333 36778999999999885
No 137
>PRK10799 metal-binding protein; Provisional
Probab=24.73 E-value=3.7e+02 Score=21.59 Aligned_cols=58 Identities=12% Similarity=-0.067 Sum_probs=34.3
Q ss_pred EEEEeecCCCchHHHHHHHcCCcEEEe--eccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEE
Q 027467 76 GVAICWDQWFPEAARAMVLQGAEILFY--PTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 139 (223)
Q Consensus 76 g~~IC~D~~~pe~~~~~~~~gadlii~--ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~a 139 (223)
++++|.|.. +++.+++..+|+|+||. |..|... ...+.+. .......++++++.++++
T Consensus 37 ~I~~alD~t-~~vi~~A~~~~~dlIitHHP~~~~~~--~~~~~~~---~~~~~~~li~~~i~vy~~ 96 (247)
T PRK10799 37 KIVTGVTAS-QALLDEAVRLQADAVIVHHGYFWKGE--SPVIRGM---KRNRLKTLLANDINLYGW 96 (247)
T ss_pred EEEEEeCCC-HHHHHHHHHCCCCEEEECCchhccCC--Cccccch---HHHHHHHHHHCCCeEEEE
Confidence 677888874 56668888899999996 4444321 1111111 112223567788776554
No 138
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=24.19 E-value=1.5e+02 Score=22.85 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=10.6
Q ss_pred eEEEEEECCCCceeee
Q 027467 25 YNSIAIIDADGSDLGL 40 (223)
Q Consensus 25 yNs~~vi~~~G~i~~~ 40 (223)
.-+.++||++|+|...
T Consensus 119 ~r~tfIID~~G~I~~~ 134 (187)
T PRK10382 119 DRATFVVDPQGIIQAI 134 (187)
T ss_pred eeEEEEECCCCEEEEE
Confidence 3566778888876433
No 139
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=24.09 E-value=1e+02 Score=25.26 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=19.4
Q ss_pred CceEEEEEeecCCCchHHHHHHHcCCcEEEeeccC
Q 027467 72 FAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAI 106 (223)
Q Consensus 72 ~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~ 106 (223)
+-+|..+.|||..+ ++.+-..|+|++++.-+.
T Consensus 15 g~ki~~lTaYD~~~---A~~~d~agvD~iLVGDSl 46 (261)
T PF02548_consen 15 GEKIVMLTAYDYPS---ARIADEAGVDIILVGDSL 46 (261)
T ss_dssp T--EEEEE--SHHH---HHHHHHTT-SEEEE-TTH
T ss_pred CCcEEEEecccHHH---HHHHHHcCCCEEEeCCcH
Confidence 56899999999844 344446799999997663
No 140
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=23.64 E-value=3e+02 Score=22.12 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=41.0
Q ss_pred ceEEEEEeecCCC--chHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcCCCccccccc
Q 027467 73 AKIGVAICWDQWF--PEAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNRIGKEIIETE 150 (223)
Q Consensus 73 ~~ig~~IC~D~~~--pe~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~ 150 (223)
-.+|+-...=..+ .++.++....+-++..+|++ ......|.++|++++.-..+..-
T Consensus 23 mvvGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS-----------------~~t~~~a~~~Gipl~~l~~~~~i----- 80 (228)
T PRK13978 23 MTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTS-----------------NKIAFLAKELGIKICEINDVDHI----- 80 (228)
T ss_pred CEEEeCchHHHHHHHHHHHHHhhccCccEEEEeCc-----------------HHHHHHHHHcCCcEechhhCCce-----
Confidence 3455544444442 35566655555678888886 22344577899998877655432
Q ss_pred cCCcceeeeeeeEEECCCCCe
Q 027467 151 HGKSQITFYGNSFIAGPTGEI 171 (223)
Q Consensus 151 ~g~~~~~~~G~S~iv~p~G~i 171 (223)
++.++|.-.| ||+.+.
T Consensus 81 ----DiaiDGADev-d~~lnl 96 (228)
T PRK13978 81 ----DLAIDGADEV-DPSLNI 96 (228)
T ss_pred ----eEEEecCcee-cCCccE
Confidence 2455555554 455443
No 141
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=23.64 E-value=1.4e+02 Score=23.23 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=20.9
Q ss_pred CCceEEEEEeecCCCchHHHHHHHcCCcEEEeecc
Q 027467 71 KFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 105 (223)
Q Consensus 71 ~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~ 105 (223)
+...+|.- -+..+|-++.+.+.||++++.|..
T Consensus 58 p~~~vGAG---TV~~~e~a~~a~~aGA~FivSP~~ 89 (196)
T PF01081_consen 58 PDLLVGAG---TVLTAEQAEAAIAAGAQFIVSPGF 89 (196)
T ss_dssp TTSEEEEE---S--SHHHHHHHHHHT-SEEEESS-
T ss_pred CCCeeEEE---eccCHHHHHHHHHcCCCEEECCCC
Confidence 34455543 345678888888999999999975
No 142
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=23.62 E-value=1e+02 Score=25.28 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=12.9
Q ss_pred eeEEEEEECCCCceeeee
Q 027467 24 HYNSIAIIDADGSDLGLY 41 (223)
Q Consensus 24 ~yNs~~vi~~~G~i~~~y 41 (223)
..-+.++||++|.|...+
T Consensus 187 a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 187 SHRASVLVDKAGVVKHVA 204 (261)
T ss_pred eecEEEEECCCCEEEEEE
Confidence 356789999999875433
No 143
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=23.60 E-value=88 Score=24.97 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=21.9
Q ss_pred HHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEcC
Q 027467 88 AARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASNR 141 (223)
Q Consensus 88 ~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~ 141 (223)
.++.+..+|+|+|+.=-. +. .. .+-...+...+.||+.+|.
T Consensus 170 Aa~~L~~~gadlIvLDCm-GY---------t~---~~r~~~~~~~g~PVlLsr~ 210 (221)
T PF07302_consen 170 AARELAEQGADLIVLDCM-GY---------TQ---EMRDIVQRALGKPVLLSRT 210 (221)
T ss_pred HHHHHHhcCCCEEEEECC-CC---------CH---HHHHHHHHHhCCCEEeHHH
Confidence 456666778887776211 10 11 1222223357888888775
No 144
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=23.58 E-value=2.8e+02 Score=23.67 Aligned_cols=70 Identities=13% Similarity=0.085 Sum_probs=40.7
Q ss_pred CCceEEEEEeecCCCchHHHHHHHcCCcEEEeeccCCC--CCCCCC-CCcHHHHHHHHHHHHhhcCceEEEEcC-CC
Q 027467 71 KFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTAIGS--EPQDDG-LDSRDHWRRVMQGHAGANVVPLVASNR-IG 143 (223)
Q Consensus 71 ~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~~~~--~~~~~~-~~~~~~~~~~~~~rA~e~~~~vv~an~-~G 143 (223)
++-+|.++.|||..+-.+.. ..|+|+|++-.+... ..+..+ ....+......++.+.-...+++.+.. .|
T Consensus 33 ~g~kivmlTAyD~~sA~i~d---~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfg 106 (332)
T PLN02424 33 RGEPITMVTAYDYPSAVHVD---SAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFG 106 (332)
T ss_pred CCCcEEEEecCCHHHHHHHH---HcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCC
Confidence 35689999999987665544 579999999776422 112222 122344444444444445556665543 44
No 145
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=23.40 E-value=1.5e+02 Score=23.31 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.9
Q ss_pred CCCchHHHHHHHcCCcEEEeecc
Q 027467 83 QWFPEAARAMVLQGAEILFYPTA 105 (223)
Q Consensus 83 ~~~pe~~~~~~~~gadlii~ps~ 105 (223)
+..++-++.+.+.|+++++.|..
T Consensus 67 Vl~~~~a~~a~~aGA~FivsP~~ 89 (204)
T TIGR01182 67 VLNPEQLRQAVDAGAQFIVSPGL 89 (204)
T ss_pred CCCHHHHHHHHHcCCCEEECCCC
Confidence 55678889999999999999976
No 146
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=23.13 E-value=2.9e+02 Score=25.10 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=37.0
Q ss_pred EEEEEeecCCCc--hHHHHHHHcCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEEc
Q 027467 75 IGVAICWDQWFP--EAARAMVLQGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVASN 140 (223)
Q Consensus 75 ig~~IC~D~~~p--e~~~~~~~~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an 140 (223)
-|...+.|.+|| +-...+++.|+..|+.|... . . +.-.-..|-++|+.++...
T Consensus 453 ~gav~aSDafFPf~Dtie~aa~~Gv~aIiqPgGS-i--------r----D~evI~aAne~gIamvfTg 507 (513)
T PRK00881 453 KGAVLASDAFFPFRDGVEAAAKAGITAIIQPGGS-I--------R----DEEVIAAADEHGIAMVFTG 507 (513)
T ss_pred CCeEEEeeCCCCchhHHHHHHHcCCeEEEeCCCC-C--------C----hHHHHHHHHHcCCEEEECC
Confidence 345667999987 66888999999999999861 0 1 1223345667888877654
No 147
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=22.99 E-value=1.9e+02 Score=25.43 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=28.6
Q ss_pred eCCceEEEEEeecCCCchHHHHHHHcCCcEEEeecc
Q 027467 70 TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 105 (223)
Q Consensus 70 ~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~ 105 (223)
.+|.||+..+=.+...--+.+.+...||++.+..++
T Consensus 30 l~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~n 65 (406)
T TIGR00936 30 LKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCN 65 (406)
T ss_pred CCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccC
Confidence 467888888877777777888888899998887665
No 148
>PRK15000 peroxidase; Provisional
Probab=22.66 E-value=1.4e+02 Score=23.13 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=9.6
Q ss_pred eEEEEEECCCCcee
Q 027467 25 YNSIAIIDADGSDL 38 (223)
Q Consensus 25 yNs~~vi~~~G~i~ 38 (223)
.-+.++|||+|.|.
T Consensus 125 ~r~tfiID~~G~I~ 138 (200)
T PRK15000 125 LRGSFLIDANGIVR 138 (200)
T ss_pred EeEEEEECCCCEEE
Confidence 55667777777664
No 149
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=22.47 E-value=1.4e+02 Score=20.26 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=9.6
Q ss_pred EEEEEECCCCceeee
Q 027467 26 NSIAIIDADGSDLGL 40 (223)
Q Consensus 26 Ns~~vi~~~G~i~~~ 40 (223)
.++++.||+|..+..
T Consensus 101 ~~~~~~DPdG~~ve~ 115 (121)
T cd07266 101 RALRVEDPLGFPIEF 115 (121)
T ss_pred cEEEEECCCCCEEEE
Confidence 466777777766543
No 150
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=22.38 E-value=1.5e+02 Score=23.25 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=19.7
Q ss_pred CCCchHHHHHHHcCCcEEEeecc
Q 027467 83 QWFPEAARAMVLQGAEILFYPTA 105 (223)
Q Consensus 83 ~~~pe~~~~~~~~gadlii~ps~ 105 (223)
+..++-++.+.+.|+++++.|..
T Consensus 63 Vl~~e~a~~ai~aGA~FivSP~~ 85 (201)
T PRK06015 63 ILNAKQFEDAAKAGSRFIVSPGT 85 (201)
T ss_pred CcCHHHHHHHHHcCCCEEECCCC
Confidence 45678889999999999999976
No 151
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=22.22 E-value=4.4e+02 Score=23.81 Aligned_cols=28 Identities=14% Similarity=0.364 Sum_probs=20.0
Q ss_pred EeecCCCchHHHHHHHcCCcEEEeeccC
Q 027467 79 ICWDQWFPEAARAMVLQGAEILFYPTAI 106 (223)
Q Consensus 79 IC~D~~~pe~~~~~~~~gadlii~ps~~ 106 (223)
++.-++|.|...+....|+|+++.||.+
T Consensus 351 ~~~~i~~~~~la~~i~agaD~~lmPSrf 378 (487)
T COG0297 351 VLVVIGYDEPLAHLIYAGADVILMPSRF 378 (487)
T ss_pred EEEEeeecHHHHHHHHhcCCEEEeCCcC
Confidence 3444556666566666799999999985
No 152
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=21.82 E-value=3.3e+02 Score=20.02 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=14.4
Q ss_pred eeeeEEECCCCCeeeecC
Q 027467 159 YGNSFIAGPTGEIVAAAD 176 (223)
Q Consensus 159 ~G~S~iv~p~G~il~~~~ 176 (223)
...+.++|++|+++....
T Consensus 110 ~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 110 TPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred CCcEEEECCCCeEEEeec
Confidence 457899999999987654
No 153
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=21.43 E-value=1.5e+02 Score=20.45 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=32.1
Q ss_pred CCchHHHHHHH-cCCcEEEeeccCCCCCCCCCCCcHHHHHHHHHHHHhhcCceEEEE
Q 027467 84 WFPEAARAMVL-QGAEILFYPTAIGSEPQDDGLDSRDHWRRVMQGHAGANVVPLVAS 139 (223)
Q Consensus 84 ~~pe~~~~~~~-~gadlii~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~a 139 (223)
-.|++...+.+ ..+|+||+... +... . ....-....+..|.++++|++..
T Consensus 55 g~~~i~~~i~~~g~idlVIn~~~-~~~~--~---~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 55 GEPTVDAAIAEKGKFDVVINLRD-PRRD--R---CTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CCcHHHHHHhCCCCEEEEEEcCC-CCcc--c---ccCCChHHHHHHHHHcCCCEEEC
Confidence 34888888888 89999999543 1110 0 01111345777899999998754
No 154
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=21.34 E-value=4.4e+02 Score=21.17 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=27.2
Q ss_pred cceEeeCCceEEEEE--eec-----------CCCchH-------HHHHHHcCCcEEEeeccCC
Q 027467 65 FKVFQTKFAKIGVAI--CWD-----------QWFPEA-------ARAMVLQGAEILFYPTAIG 107 (223)
Q Consensus 65 ~~~~~~~~~~ig~~I--C~D-----------~~~pe~-------~~~~~~~gadlii~ps~~~ 107 (223)
+.+++.++.|||++= .-+ +.|.+. .+.+...|+|+||..+.++
T Consensus 120 ~~i~~~~g~kIgviG~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g 182 (257)
T cd07406 120 SAIIERAGVKIGLLGLVEEEWLETLTIDPEYVRYRDYVETARELVDELREQGADLIIALTHMR 182 (257)
T ss_pred eEEEEECCeEEEEEEEecccccccccCCCCcceEcCHHHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 567788888888751 111 123222 2245578999999998854
No 155
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=21.20 E-value=1.5e+02 Score=20.66 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=14.8
Q ss_pred EEEEECCCCceeeeeeccCC
Q 027467 27 SIAIIDADGSDLGLYRKSHI 46 (223)
Q Consensus 27 s~~vi~~~G~i~~~y~K~~l 46 (223)
.+++++++|+++..+|+.+.
T Consensus 4 ~v~~~~~~g~vLl~~R~~~~ 23 (127)
T cd04693 4 HVCIFNSKGELLLQKRSPNK 23 (127)
T ss_pred EEEEEeCCCeEEEEEccCCC
Confidence 35778888999887776643
No 156
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=20.93 E-value=2e+02 Score=19.09 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=19.3
Q ss_pred HHHcCcEEeeeeeeecCCceeEEEEEECCCCceeeee
Q 027467 5 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLY 41 (223)
Q Consensus 5 A~~~~i~i~~G~~~~~~~~~yNs~~vi~~~G~i~~~y 41 (223)
++++++.+..+-... +.. .+.++.||+|..+..|
T Consensus 80 ~~~~g~~v~~~~~~~-~~g--~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 80 WQAKGVKIIQEPTEM-DFG--YTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHCCCeEecCcccc-CCc--cEEEEECCCCCEEEee
Confidence 345666666543222 222 2578899999876443
No 157
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=20.77 E-value=1.6e+02 Score=16.13 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=19.4
Q ss_pred cCcEEeeeeeeecCCceeEEEEEECCCC
Q 027467 8 LGVVMPVSFFEEANNAHYNSIAIIDADG 35 (223)
Q Consensus 8 ~~i~i~~G~~~~~~~~~yNs~~vi~~~G 35 (223)
..|+|++|... .....|++..+|++-
T Consensus 12 ~~iyv~GG~~~--~~~~~~~v~~yd~~~ 37 (47)
T PF01344_consen 12 NKIYVIGGYDG--NNQPTNSVEVYDPET 37 (47)
T ss_dssp TEEEEEEEBES--TSSBEEEEEEEETTT
T ss_pred CEEEEEeeecc--cCceeeeEEEEeCCC
Confidence 35788888765 567789999998764
No 158
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=20.49 E-value=1e+02 Score=20.12 Aligned_cols=18 Identities=22% Similarity=0.157 Sum_probs=13.7
Q ss_pred eeEEEEEECCCCceeeee
Q 027467 24 HYNSIAIIDADGSDLGLY 41 (223)
Q Consensus 24 ~yNs~~vi~~~G~i~~~y 41 (223)
-+-+.+++|++|+++..|
T Consensus 97 ~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 97 GLPTTFLIDRDGRIRARH 114 (116)
T ss_pred ccceEEEECCCCcEEEEe
Confidence 455679999999987554
No 159
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=20.20 E-value=2.7e+02 Score=24.62 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=30.0
Q ss_pred eCCceEEEEEeecCCCchHHHHHHHcCCcEEEeecc
Q 027467 70 TKFAKIGVAICWDQWFPEAARAMVLQGAEILFYPTA 105 (223)
Q Consensus 70 ~~~~~ig~~IC~D~~~pe~~~~~~~~gadlii~ps~ 105 (223)
..|.||+..+=.+....-+.+.+...||++.+..++
T Consensus 46 l~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~n 81 (425)
T PRK05476 46 LKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCN 81 (425)
T ss_pred CCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCC
Confidence 468899988888888888899999999998877654
No 160
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=20.19 E-value=4.7e+02 Score=21.05 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=16.0
Q ss_pred CCCeeeecCCCCceEEEEEechh
Q 027467 168 TGEIVAAADDKEEAVLVAQFDLD 190 (223)
Q Consensus 168 ~G~il~~~~~~~e~~l~~~i~l~ 190 (223)
+|.++.+.....+.+-..+|.++
T Consensus 228 ~~t~v~~~g~~~~~vg~i~l~~~ 250 (264)
T cd07411 228 GGTLVVEAGSHGKFLGRLDLDVR 250 (264)
T ss_pred CCEEEEEcCccccEEEEEEEEEE
Confidence 56677777766677777777665
No 161
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.13 E-value=1.8e+02 Score=22.98 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.6
Q ss_pred CCCchHHHHHHHcCCcEEEeecc
Q 027467 83 QWFPEAARAMVLQGAEILFYPTA 105 (223)
Q Consensus 83 ~~~pe~~~~~~~~gadlii~ps~ 105 (223)
+..++-++.....|+++++.|..
T Consensus 75 V~~~~~~~~a~~aGA~FivsP~~ 97 (213)
T PRK06552 75 VLDAVTARLAILAGAQFIVSPSF 97 (213)
T ss_pred CCCHHHHHHHHHcCCCEEECCCC
Confidence 55678888899999999999976
No 162
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=20.02 E-value=1.1e+02 Score=20.97 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=13.9
Q ss_pred EEEECCCCceeeeeecc
Q 027467 28 IAIIDADGSDLGLYRKS 44 (223)
Q Consensus 28 ~~vi~~~G~i~~~y~K~ 44 (223)
.+||+++|+++..|+-.
T Consensus 98 ~fv~d~~g~v~~~hr~~ 114 (115)
T PF13911_consen 98 TFVFDPGGKVLYEHRDR 114 (115)
T ss_pred EEEEcCCCeEEEEEecC
Confidence 78999999998877644
Done!