Query 027468
Match_columns 223
No_of_seqs 255 out of 1312
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vi6_A Homeobox protein nanog; 99.7 1.5E-18 5.1E-23 120.8 5.9 60 35-94 3-62 (62)
2 3a01_A Homeodomain-containing 99.7 2.5E-18 8.6E-23 129.3 7.1 73 33-105 15-87 (93)
3 2cue_A Paired box protein PAX6 99.7 6.3E-18 2.1E-22 123.4 9.0 64 33-96 5-68 (80)
4 2h1k_A IPF-1, pancreatic and d 99.7 2.9E-18 1E-22 119.7 6.9 59 35-93 3-61 (63)
5 1nk2_P Homeobox protein VND; h 99.7 6.5E-18 2.2E-22 122.5 9.0 66 32-97 6-71 (77)
6 2cra_A Homeobox protein HOX-B1 99.7 3.9E-18 1.3E-22 121.5 7.3 63 32-94 4-66 (70)
7 2dmu_A Homeobox protein goosec 99.7 5.7E-18 1.9E-22 120.5 7.9 62 33-94 5-66 (70)
8 1puf_A HOX-1.7, homeobox prote 99.7 1E-17 3.4E-22 121.5 9.2 64 32-95 10-73 (77)
9 2e1o_A Homeobox protein PRH; D 99.7 7.2E-18 2.4E-22 120.1 8.3 62 33-94 5-66 (70)
10 2da3_A Alpha-fetoprotein enhan 99.7 4.5E-18 1.5E-22 123.6 7.2 63 32-94 14-76 (80)
11 2dmt_A Homeobox protein BARH-l 99.7 8.9E-18 3E-22 122.6 8.6 62 33-94 15-76 (80)
12 2dmq_A LIM/homeobox protein LH 99.7 8.4E-18 2.9E-22 122.4 8.4 63 33-95 5-67 (80)
13 1ig7_A Homeotic protein MSX-1; 99.7 6.4E-18 2.2E-22 115.8 7.2 57 36-92 1-57 (58)
14 2da2_A Alpha-fetoprotein enhan 99.7 4.7E-18 1.6E-22 120.8 6.8 62 33-94 5-66 (70)
15 2kt0_A Nanog, homeobox protein 99.7 8E-18 2.7E-22 123.6 8.3 64 31-94 18-81 (84)
16 1zq3_P PRD-4, homeotic bicoid 99.7 6.2E-18 2.1E-22 119.9 7.4 62 34-95 1-62 (68)
17 2hdd_A Protein (engrailed home 99.7 4.7E-18 1.6E-22 117.9 6.6 58 35-92 3-60 (61)
18 3rkq_A Homeobox protein NKX-2. 99.7 7.1E-18 2.4E-22 115.1 7.0 58 34-91 1-58 (58)
19 2dms_A Homeobox protein OTX2; 99.7 8.3E-18 2.8E-22 122.7 7.6 63 33-95 5-67 (80)
20 2djn_A Homeobox protein DLX-5; 99.7 7.6E-18 2.6E-22 119.9 6.8 62 33-94 5-66 (70)
21 2da1_A Alpha-fetoprotein enhan 99.7 6.4E-18 2.2E-22 120.1 6.4 62 33-94 5-66 (70)
22 1bw5_A ISL-1HD, insulin gene e 99.7 4.7E-18 1.6E-22 119.6 5.6 60 35-94 3-62 (66)
23 1uhs_A HOP, homeodomain only p 99.7 1.3E-17 4.4E-22 119.4 7.6 59 36-94 2-61 (72)
24 2l7z_A Homeobox protein HOX-A1 99.7 1.5E-17 5.3E-22 119.5 8.0 62 33-94 5-66 (73)
25 1b8i_A Ultrabithorax, protein 99.7 8.8E-18 3E-22 123.1 6.7 63 32-94 17-79 (81)
26 1jgg_A Segmentation protein EV 99.7 1E-17 3.5E-22 115.8 6.7 58 36-93 2-59 (60)
27 3nar_A ZHX1, zinc fingers and 99.7 7.7E-18 2.6E-22 127.1 6.3 71 26-96 16-86 (96)
28 1ahd_P Antennapedia protein mu 99.7 8.6E-18 2.9E-22 119.2 6.2 60 35-94 2-61 (68)
29 1fjl_A Paired protein; DNA-bin 99.7 2E-17 6.7E-22 120.9 7.9 63 33-95 16-78 (81)
30 1ftt_A TTF-1 HD, thyroid trans 99.7 1.6E-17 5.4E-22 117.8 7.1 61 35-95 2-62 (68)
31 2cqx_A LAG1 longevity assuranc 99.7 5.6E-18 1.9E-22 122.0 4.8 65 29-93 2-67 (72)
32 2m0c_A Homeobox protein arista 99.7 1.8E-17 6.2E-22 118.9 7.2 62 33-94 7-68 (75)
33 1yz8_P Pituitary homeobox 2; D 99.7 6.6E-18 2.3E-22 119.6 4.8 62 34-95 2-63 (68)
34 1wh5_A ZF-HD homeobox family p 99.7 2E-17 6.7E-22 121.4 7.3 60 33-92 15-78 (80)
35 2k40_A Homeobox expressed in E 99.7 1.7E-17 5.8E-22 117.1 6.6 61 36-96 2-62 (67)
36 3a03_A T-cell leukemia homeobo 99.7 2E-17 6.9E-22 113.0 6.6 54 40-93 2-55 (56)
37 2da5_A Zinc fingers and homeob 99.7 2.6E-17 9.1E-22 118.9 7.3 59 36-94 8-66 (75)
38 2hi3_A Homeodomain-only protei 99.7 3.3E-17 1.1E-21 117.6 7.7 59 36-94 3-62 (73)
39 3a02_A Homeobox protein arista 99.7 1.8E-17 6.2E-22 114.5 6.1 57 38-94 2-58 (60)
40 2da4_A Hypothetical protein DK 99.7 1.5E-17 5.1E-22 121.3 5.9 62 33-94 6-71 (80)
41 1akh_A Protein (mating-type pr 99.7 1.9E-17 6.5E-22 114.6 5.8 58 34-91 4-61 (61)
42 2ecc_A Homeobox and leucine zi 99.7 2.9E-17 9.8E-22 119.8 6.9 59 37-95 5-63 (76)
43 2r5y_A Homeotic protein sex co 99.7 2.3E-17 7.7E-22 122.5 6.3 62 33-94 26-87 (88)
44 2dn0_A Zinc fingers and homeob 99.7 3.1E-17 1E-21 118.7 6.0 60 35-94 8-67 (76)
45 2ly9_A Zinc fingers and homeob 99.7 5.9E-17 2E-21 116.3 7.3 61 34-94 5-65 (74)
46 1wh7_A ZF-HD homeobox family p 99.7 4.5E-17 1.5E-21 119.6 6.3 60 32-92 14-78 (80)
47 1x2n_A Homeobox protein pknox1 99.7 8.3E-17 2.9E-21 115.3 7.3 63 33-95 5-70 (73)
48 1b72_A Protein (homeobox prote 99.7 7.6E-17 2.6E-21 121.8 7.1 63 33-95 32-94 (97)
49 1puf_B PRE-B-cell leukemia tra 99.7 5.4E-17 1.8E-21 116.3 5.8 61 36-96 2-65 (73)
50 1k61_A Mating-type protein alp 99.7 1.1E-16 3.8E-21 110.4 6.7 56 38-93 1-59 (60)
51 1du6_A PBX1, homeobox protein 99.7 6.2E-17 2.1E-21 113.1 5.5 58 35-92 3-63 (64)
52 2ecb_A Zinc fingers and homeob 99.7 2.2E-16 7.4E-21 118.3 7.9 56 39-94 15-70 (89)
53 2cuf_A FLJ21616 protein; homeo 99.7 2E-16 6.9E-21 119.0 7.8 63 33-95 5-82 (95)
54 1b72_B Protein (PBX1); homeodo 99.6 1.9E-16 6.6E-21 116.9 7.0 61 36-96 2-65 (87)
55 2dmn_A Homeobox protein TGIF2L 99.6 3.9E-16 1.3E-20 114.9 8.3 63 33-95 5-70 (83)
56 1mnm_C Protein (MAT alpha-2 tr 99.6 1.9E-16 6.5E-21 117.2 6.7 61 32-92 24-87 (87)
57 1le8_B Mating-type protein alp 99.6 1.4E-16 4.7E-21 117.2 5.6 63 36-98 3-68 (83)
58 2dmp_A Zinc fingers and homeob 99.6 5.4E-16 1.9E-20 115.7 8.3 57 38-94 16-72 (89)
59 1au7_A Protein PIT-1, GHF-1; c 99.6 4E-16 1.4E-20 126.2 5.8 61 33-93 85-145 (146)
60 2l9r_A Homeobox protein NKX-3. 99.6 5.5E-16 1.9E-20 110.9 5.0 56 40-95 9-64 (69)
61 2da6_A Hepatocyte nuclear fact 99.6 2.3E-15 7.7E-20 115.4 8.6 64 32-95 3-87 (102)
62 3nau_A Zinc fingers and homeob 99.6 1.1E-15 3.7E-20 108.5 6.3 53 42-94 11-63 (66)
63 3d1n_I POU domain, class 6, tr 99.6 1.3E-15 4.5E-20 123.4 7.7 60 33-92 91-150 (151)
64 1e3o_C Octamer-binding transcr 99.6 7.1E-16 2.4E-20 126.3 6.1 61 33-93 99-159 (160)
65 1wi3_A DNA-binding protein SAT 99.6 1.7E-15 5.7E-20 108.1 7.0 60 32-91 4-64 (71)
66 2xsd_C POU domain, class 3, tr 99.6 7.6E-16 2.6E-20 126.9 5.4 63 33-95 97-159 (164)
67 2e19_A Transcription factor 8; 99.6 1.6E-15 5.6E-20 106.7 6.4 53 40-92 8-60 (64)
68 1x2m_A LAG1 longevity assuranc 99.6 7.6E-16 2.6E-20 108.8 4.6 50 44-93 9-59 (64)
69 3k2a_A Homeobox protein MEIS2; 99.6 1.8E-15 6.3E-20 107.2 5.5 61 40-100 3-66 (67)
70 1lfb_A Liver transcription fac 99.6 1.7E-15 5.9E-20 115.4 4.8 63 33-95 7-90 (99)
71 3l1p_A POU domain, class 5, tr 99.6 2.7E-15 9.3E-20 122.3 6.1 61 33-93 94-154 (155)
72 2d5v_A Hepatocyte nuclear fact 99.5 4.2E-15 1.4E-19 121.7 5.9 63 33-95 95-157 (164)
73 2lk2_A Homeobox protein TGIF1; 99.4 8.5E-13 2.9E-17 98.7 6.8 58 40-97 10-70 (89)
74 1ic8_A Hepatocyte nuclear fact 99.3 4.2E-13 1.4E-17 113.4 3.2 60 33-92 113-193 (194)
75 2da7_A Zinc finger homeobox pr 99.3 1.6E-12 5.5E-17 93.0 5.4 47 44-90 14-60 (71)
76 2h8r_A Hepatocyte nuclear fact 99.2 1.1E-11 3.6E-16 106.6 6.0 59 32-90 139-218 (221)
77 1mh3_A Maltose binding-A1 home 99.2 6.2E-12 2.1E-16 113.3 4.7 54 38-91 368-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 5.8E-10 2E-14 70.4 -2.1 25 77-101 1-25 (37)
79 1hjb_A Ccaat/enhancer binding 93.7 0.28 9.7E-06 35.9 7.5 51 86-139 28-78 (87)
80 2ys9_A Homeobox and leucine zi 93.6 0.065 2.2E-06 37.9 3.8 39 47-85 18-56 (70)
81 1gu4_A CAAT/enhancer binding p 93.2 0.22 7.5E-06 35.8 6.1 49 86-137 28-76 (78)
82 1t2k_D Cyclic-AMP-dependent tr 92.9 0.61 2.1E-05 31.5 7.7 40 96-135 21-60 (61)
83 1ci6_A Transcription factor AT 92.7 0.63 2.1E-05 31.8 7.6 40 96-135 22-61 (63)
84 2wt7_A Proto-oncogene protein 92.0 0.84 2.9E-05 31.1 7.6 41 96-136 22-62 (63)
85 1jnm_A Proto-oncogene C-JUN; B 89.9 0.64 2.2E-05 31.5 5.3 39 97-135 22-60 (62)
86 2jn6_A Protein CGL2762, transp 89.8 0.11 3.9E-06 37.3 1.5 45 39-87 3-48 (97)
87 1gd2_E Transcription factor PA 89.6 1.4 4.9E-05 30.9 7.0 40 96-135 28-67 (70)
88 2yy0_A C-MYC-binding protein; 88.6 1.1 3.6E-05 29.8 5.5 31 105-135 20-50 (53)
89 2jee_A YIIU; FTSZ, septum, coi 87.0 3.7 0.00013 29.6 7.9 43 92-134 22-64 (81)
90 2wt7_B Transcription factor MA 86.2 6.8 0.00023 28.7 9.2 65 73-137 17-88 (90)
91 2yy0_A C-MYC-binding protein; 86.0 1.2 4.1E-05 29.6 4.5 33 96-128 18-50 (53)
92 2oxj_A Hybrid alpha/beta pepti 85.9 1.8 6.1E-05 26.2 4.8 29 108-136 5-33 (34)
93 3m48_A General control protein 85.4 1.7 5.7E-05 26.2 4.5 28 109-136 5-32 (33)
94 3c3g_A Alpha/beta peptide with 84.9 2.1 7.2E-05 25.7 4.7 28 108-135 4-31 (33)
95 1gd2_E Transcription factor PA 84.3 2 6.9E-05 30.1 5.3 41 91-131 30-70 (70)
96 3c3f_A Alpha/beta peptide with 83.7 2.5 8.5E-05 25.5 4.7 28 108-135 5-32 (34)
97 1t2k_D Cyclic-AMP-dependent tr 83.6 4.9 0.00017 26.9 6.9 39 88-126 20-58 (61)
98 1kd8_B GABH BLL, GCN4 acid bas 83.5 2.6 8.7E-05 25.8 4.7 29 108-136 5-33 (36)
99 3m91_A Proteasome-associated A 83.4 4.6 0.00016 26.6 6.4 41 96-136 8-48 (51)
100 2dgc_A Protein (GCN4); basic d 83.4 4.8 0.00016 27.4 6.8 30 106-135 32-61 (63)
101 3vmx_A Voltage-gated hydrogen 81.3 7.3 0.00025 25.3 6.6 42 96-137 3-44 (48)
102 1dh3_A Transcription factor CR 80.7 7.1 0.00024 25.8 6.7 32 104-135 22-53 (55)
103 2bni_A General control protein 80.2 3.3 0.00011 25.1 4.3 27 109-135 6-32 (34)
104 1kd8_A GABH AIV, GCN4 acid bas 79.5 4.3 0.00015 24.8 4.7 29 108-136 5-33 (36)
105 2wt7_A Proto-oncogene protein 79.4 9 0.00031 25.8 7.1 35 92-126 25-59 (63)
106 1hjb_A Ccaat/enhancer binding 78.7 5.6 0.00019 28.9 6.1 43 91-133 37-79 (87)
107 1uo4_A General control protein 78.0 4.9 0.00017 24.3 4.6 28 109-136 6-33 (34)
108 1ci6_A Transcription factor AT 76.9 12 0.0004 25.3 7.0 40 88-127 21-60 (63)
109 3a2a_A Voltage-gated hydrogen 76.6 7.1 0.00024 26.2 5.6 43 95-137 9-51 (58)
110 2hy6_A General control protein 76.5 6.2 0.00021 23.8 4.7 28 108-135 5-32 (34)
111 2glo_A Brinker CG9653-PA; prot 76.4 3.1 0.0001 27.0 3.9 45 39-84 3-47 (59)
112 1hlv_A CENP-B, major centromer 75.1 7 0.00024 28.8 6.1 49 38-89 4-52 (131)
113 3hnw_A Uncharacterized protein 74.7 15 0.0005 28.7 8.1 43 94-136 86-128 (138)
114 1jnm_A Proto-oncogene C-JUN; B 72.9 5.6 0.00019 26.7 4.6 35 103-137 21-55 (62)
115 2elh_A CG11849-PA, LD40883P; s 71.9 12 0.00043 26.0 6.5 43 37-84 18-60 (87)
116 1uii_A Geminin; human, DNA rep 71.2 12 0.00041 27.0 6.2 33 104-136 46-78 (83)
117 2r2v_A GCN4 leucine zipper; co 70.5 10 0.00036 22.8 4.7 29 108-136 5-33 (34)
118 2wuj_A Septum site-determining 70.4 4 0.00014 27.1 3.3 29 106-134 29-57 (57)
119 2wq1_A General control protein 70.3 11 0.00036 22.6 4.7 28 108-135 4-31 (33)
120 3m91_A Proteasome-associated A 69.4 21 0.00071 23.4 6.6 41 90-130 9-49 (51)
121 2jee_A YIIU; FTSZ, septum, coi 68.3 25 0.00086 25.2 7.3 42 89-130 26-67 (81)
122 3m9b_A Proteasome-associated A 67.0 6.5 0.00022 34.0 4.7 38 99-136 56-93 (251)
123 1deb_A APC protein, adenomatou 66.7 11 0.00039 24.7 4.8 22 106-127 5-26 (54)
124 3s4r_A Vimentin; alpha-helix, 65.6 34 0.0011 24.8 7.8 56 78-134 38-93 (93)
125 1tc3_C Protein (TC3 transposas 64.8 10 0.00034 22.2 4.2 41 40-85 4-44 (51)
126 3s9g_A Protein hexim1; cyclin 64.4 30 0.001 25.8 7.2 37 97-133 51-87 (104)
127 2dgc_A Protein (GCN4); basic d 64.2 17 0.00057 24.6 5.5 33 96-128 29-61 (63)
128 3m9b_A Proteasome-associated A 64.0 11 0.00037 32.6 5.5 43 90-132 54-96 (251)
129 1go4_E MAD1 (mitotic arrest de 63.6 23 0.00078 26.4 6.6 34 105-138 13-46 (100)
130 2j5u_A MREC protein; bacterial 63.6 3.5 0.00012 35.3 2.4 38 102-139 24-64 (255)
131 1nkp_B MAX protein, MYC proto- 63.5 17 0.0006 25.4 5.8 31 108-138 51-81 (83)
132 1gu4_A CAAT/enhancer binding p 62.1 22 0.00077 25.1 6.1 37 102-138 34-70 (78)
133 1go4_E MAD1 (mitotic arrest de 62.0 17 0.00057 27.1 5.6 32 98-129 13-44 (100)
134 3hnw_A Uncharacterized protein 61.4 36 0.0012 26.4 7.8 43 93-135 78-120 (138)
135 1wt6_A Myotonin-protein kinase 59.8 42 0.0015 24.0 7.1 43 94-136 28-70 (81)
136 3hug_A RNA polymerase sigma fa 58.6 21 0.00074 24.7 5.6 46 41-91 37-82 (92)
137 3iv1_A Tumor susceptibility ge 57.1 49 0.0017 23.5 8.0 49 85-133 13-68 (78)
138 3gpv_A Transcriptional regulat 56.9 64 0.0022 24.8 8.6 78 38-137 51-128 (148)
139 1je8_A Nitrate/nitrite respons 56.1 29 0.00098 23.7 5.8 49 38-92 18-66 (82)
140 1jko_C HIN recombinase, DNA-in 55.2 5.7 0.00019 23.9 1.7 41 41-86 5-45 (52)
141 1s7o_A Hypothetical UPF0122 pr 55.1 60 0.002 23.8 8.6 47 41-92 22-68 (113)
142 1t6f_A Geminin; coiled-coil, c 54.3 26 0.00087 21.4 4.4 29 104-132 7-35 (37)
143 3w03_C DNA repair protein XRCC 53.6 25 0.00084 29.0 5.7 37 98-134 139-175 (184)
144 1nkp_A C-MYC, MYC proto-oncoge 53.3 32 0.0011 24.6 5.8 29 102-130 57-85 (88)
145 3oja_B Anopheles plasmodium-re 52.7 41 0.0014 31.0 7.9 38 98-135 538-575 (597)
146 3v86_A De novo design helix; c 51.9 19 0.00066 20.1 3.3 22 109-130 5-26 (27)
147 1wlq_A Geminin; coiled-coil; 2 51.8 48 0.0017 23.8 6.4 29 105-133 39-67 (83)
148 1xsv_A Hypothetical UPF0122 pr 51.3 55 0.0019 23.9 7.0 47 41-92 25-71 (113)
149 1nkp_B MAX protein, MYC proto- 51.1 28 0.00095 24.3 5.1 33 98-130 48-80 (83)
150 2o8x_A Probable RNA polymerase 51.1 17 0.00058 23.4 3.7 46 41-91 15-60 (70)
151 1nlw_A MAD protein, MAX dimeri 49.7 35 0.0012 23.9 5.4 27 109-135 52-78 (80)
152 1p4w_A RCSB; solution structur 49.5 34 0.0012 24.6 5.5 47 39-91 32-78 (99)
153 3c57_A Two component transcrip 49.0 34 0.0012 24.1 5.3 47 40-92 26-72 (95)
154 2wvr_A Geminin; DNA replicatio 47.2 58 0.002 27.2 7.0 27 98-124 116-142 (209)
155 2oto_A M protein; helical coil 47.1 96 0.0033 24.0 8.2 44 84-127 23-66 (155)
156 3mzy_A RNA polymerase sigma-H 47.0 43 0.0015 24.5 5.9 45 41-91 109-153 (164)
157 1nlw_A MAD protein, MAX dimeri 46.5 41 0.0014 23.6 5.3 33 98-130 48-80 (80)
158 2v4h_A NF-kappa-B essential mo 46.2 93 0.0032 23.5 8.1 38 98-135 63-107 (110)
159 2x7l_M HIV REV; nuclear export 46.1 20 0.00068 27.3 3.7 38 47-98 15-52 (115)
160 3w03_C DNA repair protein XRCC 45.9 67 0.0023 26.3 7.2 39 98-136 146-184 (184)
161 1fse_A GERE; helix-turn-helix 45.8 57 0.002 20.9 6.1 47 39-91 9-55 (74)
162 3mq7_A Bone marrow stromal ant 45.7 94 0.0032 23.8 7.5 63 74-136 41-110 (121)
163 2p7v_B Sigma-70, RNA polymeras 45.7 37 0.0013 22.0 4.8 50 41-91 5-54 (68)
164 2oqq_A Transcription factor HY 45.4 55 0.0019 20.6 6.1 31 105-135 11-41 (42)
165 2wt7_B Transcription factor MA 45.1 67 0.0023 23.3 6.4 49 82-130 38-88 (90)
166 1p9i_A Cortexillin I/GCN4 hybr 44.7 39 0.0013 19.4 3.9 22 113-134 8-29 (31)
167 2v71_A Nuclear distribution pr 44.6 98 0.0034 25.4 8.1 43 89-131 62-108 (189)
168 1x3u_A Transcriptional regulat 43.1 43 0.0015 22.0 4.9 45 42-92 17-61 (79)
169 3q4f_C DNA repair protein XRCC 42.8 47 0.0016 27.3 5.7 34 100-133 150-183 (186)
170 4dzn_A Coiled-coil peptide CC- 42.5 49 0.0017 19.2 4.7 24 109-132 7-30 (33)
171 3lph_A Protein REV; helix-loop 42.1 18 0.00062 25.4 2.7 37 47-97 18-54 (72)
172 3ulq_B Transcriptional regulat 41.9 49 0.0017 23.2 5.2 47 38-90 26-72 (90)
173 2rn7_A IS629 ORFA; helix, all 41.7 40 0.0014 23.9 4.8 46 39-84 4-52 (108)
174 1a93_B MAX protein, coiled coi 41.6 46 0.0016 20.0 4.1 15 118-132 14-28 (34)
175 1iuf_A Centromere ABP1 protein 41.1 46 0.0016 25.3 5.3 51 36-86 6-60 (144)
176 3s9g_A Protein hexim1; cyclin 40.5 69 0.0024 23.8 5.8 28 104-131 65-92 (104)
177 1dip_A Delta-sleep-inducing pe 40.5 94 0.0032 21.9 8.1 34 105-138 16-49 (78)
178 1ku3_A Sigma factor SIGA; heli 40.5 57 0.002 21.3 5.2 48 41-91 10-59 (73)
179 4h22_A Leucine-rich repeat fli 39.0 1.2E+02 0.004 22.6 7.5 54 84-137 31-84 (103)
180 1no4_A Late, head morphogenesi 38.7 1.1E+02 0.0036 22.0 7.0 43 93-135 29-71 (97)
181 2zxx_A Geminin; coiled-coil, c 38.5 89 0.0031 22.2 6.0 28 106-133 36-63 (79)
182 1nkp_A C-MYC, MYC proto-oncoge 38.1 57 0.002 23.2 5.1 33 106-138 54-86 (88)
183 3jsv_C NF-kappa-B essential mo 37.2 79 0.0027 23.2 5.7 39 97-135 40-85 (94)
184 4b4t_K 26S protease regulatory 36.6 60 0.002 29.7 6.1 44 87-130 46-89 (428)
185 2rnj_A Response regulator prot 36.4 34 0.0011 23.7 3.5 47 40-92 28-74 (91)
186 1uii_A Geminin; human, DNA rep 35.8 1.2E+02 0.0041 21.7 7.6 36 97-132 46-81 (83)
187 3oja_A Leucine-rich immune mol 35.7 1E+02 0.0035 27.7 7.6 30 103-132 434-463 (487)
188 2v71_A Nuclear distribution pr 35.3 1.4E+02 0.0048 24.5 7.6 39 94-132 60-102 (189)
189 1wlq_A Geminin; coiled-coil; 2 35.3 96 0.0033 22.2 5.7 40 97-136 38-80 (83)
190 3oja_B Anopheles plasmodium-re 34.6 78 0.0027 29.1 6.7 39 97-135 544-582 (597)
191 3tnu_B Keratin, type II cytosk 34.6 1E+02 0.0035 23.1 6.3 12 123-134 87-98 (129)
192 2w6a_A ARF GTPase-activating p 34.6 1.1E+02 0.0036 20.7 6.3 24 108-131 38-61 (63)
193 1tty_A Sigma-A, RNA polymerase 34.5 57 0.002 22.3 4.5 49 41-92 18-68 (87)
194 1dh3_A Transcription factor CR 34.4 73 0.0025 20.7 4.7 29 98-126 23-51 (55)
195 2ve7_C Kinetochore protein NUF 34.2 24 0.00081 30.1 2.9 39 97-135 141-179 (250)
196 2v66_B Nuclear distribution pr 33.2 1.5E+02 0.0053 22.2 8.1 14 95-108 15-28 (111)
197 3i5g_B Myosin regulatory light 33.1 89 0.003 23.3 5.8 40 38-77 6-50 (153)
198 3i00_A HIP-I, huntingtin-inter 32.7 1.4E+02 0.0048 22.6 6.7 17 119-135 62-78 (120)
199 1irz_A ARR10-B; helix-turn-hel 32.4 96 0.0033 21.0 5.1 58 35-92 3-62 (64)
200 2fxo_A Myosin heavy chain, car 32.3 1.6E+02 0.0054 22.1 8.1 49 87-135 73-121 (129)
201 2wuj_A Septum site-determining 31.5 33 0.0011 22.5 2.6 34 93-126 23-56 (57)
202 3gp4_A Transcriptional regulat 31.5 1.7E+02 0.0058 22.2 11.1 36 38-86 37-72 (142)
203 1rp3_A RNA polymerase sigma fa 30.8 43 0.0015 26.3 3.7 46 41-91 187-232 (239)
204 3he5_B Synzip2; heterodimeric 30.7 1E+02 0.0036 19.5 7.2 36 100-135 13-48 (52)
205 1u78_A TC3 transposase, transp 30.0 68 0.0023 23.1 4.5 42 40-86 5-46 (141)
206 2oa5_A Hypothetical protein BQ 29.9 36 0.0012 25.8 2.8 24 113-136 10-33 (110)
207 2v4h_A NF-kappa-B essential mo 29.9 1.8E+02 0.0061 21.9 7.4 30 101-130 80-109 (110)
208 2pmy_A RAS and EF-hand domain- 29.8 34 0.0012 23.1 2.6 46 39-84 18-68 (91)
209 1a93_A Coiled coil, LZ, MYC pr 28.8 75 0.0026 19.1 3.6 26 104-129 7-32 (34)
210 3oa7_A Head morphogenesis prot 28.5 1.4E+02 0.0049 24.7 6.5 39 93-131 33-71 (206)
211 3bd1_A CRO protein; transcript 28.4 28 0.00095 23.1 1.9 23 65-87 14-36 (79)
212 3a5t_A Transcription factor MA 28.4 11 0.00036 28.5 -0.3 12 73-84 27-38 (107)
213 2xi8_A Putative transcription 28.3 24 0.00083 21.9 1.5 23 65-87 17-39 (66)
214 2w83_C C-JUN-amino-terminal ki 28.2 1.2E+02 0.0042 21.4 5.2 20 111-130 37-56 (77)
215 3u06_A Protein claret segregat 28.2 76 0.0026 28.9 5.3 44 89-132 16-59 (412)
216 1or7_A Sigma-24, RNA polymeras 28.1 82 0.0028 23.9 4.9 45 42-91 141-185 (194)
217 3he5_A Synzip1; heterodimeric 27.6 1.2E+02 0.004 19.0 6.8 41 94-134 7-47 (49)
218 2r1j_L Repressor protein C2; p 27.3 26 0.00089 21.9 1.5 24 65-88 21-44 (68)
219 3q8t_A Beclin-1; autophagy, AT 26.9 1.8E+02 0.0061 20.9 7.0 35 97-131 11-45 (96)
220 1lwu_C Fibrinogen gamma chain; 26.9 2.4E+02 0.0082 24.8 8.2 44 95-138 17-60 (323)
221 2jpc_A SSRB; DNA binding prote 26.7 44 0.0015 20.8 2.6 27 66-92 17-43 (61)
222 1jcd_A Major outer membrane li 26.4 1.4E+02 0.0047 19.5 7.3 43 93-135 7-49 (52)
223 3tnu_A Keratin, type I cytoske 26.2 1.1E+02 0.0037 23.1 5.1 13 122-134 88-100 (131)
224 2x48_A CAG38821; archeal virus 26.1 61 0.0021 19.8 3.1 36 44-84 18-53 (55)
225 2wvr_A Geminin; DNA replicatio 25.8 2.7E+02 0.0094 23.1 7.8 36 102-137 113-148 (209)
226 3ol1_A Vimentin; structural ge 25.6 2.1E+02 0.0071 21.3 6.6 19 101-119 24-42 (119)
227 3ol1_A Vimentin; structural ge 25.5 2.1E+02 0.0071 21.3 7.1 41 92-132 64-104 (119)
228 3trt_A Vimentin; cytoskeleton, 25.5 1.6E+02 0.0054 19.8 7.4 21 111-131 56-76 (77)
229 2xdj_A Uncharacterized protein 25.3 1.8E+02 0.0062 20.5 7.1 14 101-114 31-44 (83)
230 2v66_B Nuclear distribution pr 25.3 2.2E+02 0.0074 21.4 7.2 16 102-117 40-55 (111)
231 3bs3_A Putative DNA-binding pr 25.2 30 0.001 22.3 1.6 24 65-88 26-49 (76)
232 4etp_A Kinesin-like protein KA 25.0 89 0.003 28.2 5.1 43 92-134 19-61 (403)
233 2q0o_A Probable transcriptiona 24.9 1.1E+02 0.0037 24.7 5.3 48 39-92 173-220 (236)
234 2b5a_A C.BCLI; helix-turn-heli 24.9 55 0.0019 21.0 2.9 23 65-87 26-48 (77)
235 4b4t_K 26S protease regulatory 24.8 1.2E+02 0.0042 27.5 6.1 46 94-139 46-91 (428)
236 1zug_A Phage 434 CRO protein; 24.7 30 0.001 21.9 1.5 24 65-88 19-42 (71)
237 3a7p_A Autophagy protein 16; c 24.6 2.6E+02 0.009 22.1 7.8 36 98-133 97-132 (152)
238 3swk_A Vimentin; cytoskeleton, 24.5 1.2E+02 0.004 21.5 4.7 33 101-133 4-36 (86)
239 2q1z_A RPOE, ECF SIGE; ECF sig 24.2 49 0.0017 25.0 2.9 25 67-91 156-180 (184)
240 2w6a_A ARF GTPase-activating p 24.2 1.7E+02 0.0058 19.7 6.1 39 98-136 14-52 (63)
241 2l5g_A GPS2 protein, G protein 24.2 1.3E+02 0.0044 18.4 4.3 23 101-123 12-34 (38)
242 2rgt_A Fusion of LIM/homeobox 24.0 1.4 4.8E-05 34.9 -6.4 30 33-62 134-163 (169)
243 3a7p_A Autophagy protein 16; c 23.8 2.7E+02 0.0093 22.0 7.9 14 117-130 102-115 (152)
244 1fi6_A EH domain protein REPS1 23.8 89 0.0031 21.2 4.0 44 41-84 2-50 (92)
245 2qko_A Possible transcriptiona 23.6 40 0.0014 25.8 2.3 42 47-89 34-75 (215)
246 3clo_A Transcriptional regulat 23.6 1.5E+02 0.0052 24.2 6.0 47 40-92 196-242 (258)
247 2hin_A GP39, repressor protein 23.6 43 0.0015 23.0 2.1 22 65-86 13-34 (71)
248 3ilw_A DNA gyrase subunit A; D 23.5 4.5E+02 0.015 24.4 9.7 76 62-137 385-463 (470)
249 3swk_A Vimentin; cytoskeleton, 23.5 1.7E+02 0.0057 20.6 5.4 40 92-131 44-83 (86)
250 2hxi_A Putative transcriptiona 23.3 48 0.0016 26.9 2.8 52 38-90 25-77 (241)
251 2lv7_A Calcium-binding protein 23.3 1.9E+02 0.0066 20.1 6.3 47 38-84 26-79 (100)
252 3b7h_A Prophage LP1 protein 11 23.3 38 0.0013 21.9 1.8 23 65-87 23-45 (78)
253 1adr_A P22 C2 repressor; trans 23.0 35 0.0012 21.9 1.5 24 65-88 21-44 (76)
254 1pdn_C Protein (PRD paired); p 23.0 1.8E+02 0.006 20.1 5.6 41 40-85 16-56 (128)
255 3lay_A Zinc resistance-associa 22.9 2.9E+02 0.01 22.0 8.7 14 41-54 67-80 (175)
256 3q0x_A Centriole protein; cent 22.7 2.5E+02 0.0086 23.6 7.1 25 110-134 191-215 (228)
257 3iv1_A Tumor susceptibility ge 22.5 2.1E+02 0.0071 20.2 7.0 42 93-134 14-55 (78)
258 1l3l_A Transcriptional activat 22.3 1.3E+02 0.0046 24.0 5.4 47 39-91 171-217 (234)
259 3qq6_A HTH-type transcriptiona 22.2 46 0.0016 22.1 2.1 20 66-85 27-46 (78)
260 2zxx_A Geminin; coiled-coil, c 22.1 2E+02 0.0067 20.4 5.4 28 97-124 34-61 (79)
261 3omt_A Uncharacterized protein 21.8 39 0.0013 21.8 1.6 23 65-87 24-46 (73)
262 3ra3_A P1C; coiled coil domain 21.6 56 0.0019 18.3 1.9 16 119-134 8-23 (28)
263 2kvr_A Ubiquitin carboxyl-term 21.6 26 0.0009 26.8 0.8 23 65-87 72-94 (130)
264 3kin_B Kinesin heavy chain; mo 21.5 1.4E+02 0.0048 22.2 4.9 27 103-129 88-114 (117)
265 1r69_A Repressor protein CI; g 21.5 39 0.0013 21.2 1.5 24 65-88 17-40 (69)
266 2a6c_A Helix-turn-helix motif; 21.4 77 0.0026 21.1 3.1 23 65-87 34-56 (83)
267 3oja_A Leucine-rich immune mol 21.1 2.4E+02 0.0081 25.2 7.3 37 97-133 435-471 (487)
268 3kin_B Kinesin heavy chain; mo 21.1 1.2E+02 0.0042 22.5 4.4 30 107-136 85-114 (117)
269 3aqt_A Bacterial regulatory pr 20.8 18 0.00061 29.0 -0.4 43 48-91 53-95 (245)
270 3gyk_A 27KDA outer membrane pr 20.5 2.6E+02 0.0088 20.7 6.4 39 47-85 85-123 (175)
271 2wiu_B HTH-type transcriptiona 20.4 57 0.0019 21.6 2.2 23 65-87 28-50 (88)
272 1y7y_A C.AHDI; helix-turn-heli 20.3 43 0.0015 21.3 1.5 23 65-87 29-51 (74)
273 3cvf_A Homer-3, homer protein 20.1 2.4E+02 0.0081 19.9 7.0 6 129-134 66-71 (79)
No 1
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.74 E-value=1.5e-18 Score=120.79 Aligned_cols=60 Identities=27% Similarity=0.380 Sum_probs=53.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 35 TGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 35 ~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
.++.|+.|+..|+..||..|..++||+...+..||..+||++.+|++||||||+++|+++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 456789999999999999999999999999999999999999999999999999999864
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.74 E-value=2.5e-18 Score=129.26 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHHHHHHHHHHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIEREYTKLKAE 105 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~~e~~~lk~~ 105 (223)
...++.|++|+..|+..||..|..++||+..++..||..|||++++|+|||||||+|+|+...+.....+.+.
T Consensus 15 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~ 87 (93)
T 3a01_A 15 PKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAA 87 (93)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC--------
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHH
Confidence 4456678999999999999999999999999999999999999999999999999999998776555544443
No 3
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=6.3e-18 Score=123.44 Aligned_cols=64 Identities=27% Similarity=0.523 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIE 96 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~ 96 (223)
..+++.|++|+..|+.+||..|..++||+..++..||..|||++++|++||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 3456788999999999999999999999999999999999999999999999999999986543
No 4
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.74 E-value=2.9e-18 Score=119.75 Aligned_cols=59 Identities=25% Similarity=0.388 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhH
Q 027468 35 TGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTK 93 (223)
Q Consensus 35 ~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krk 93 (223)
.++.|++|+..|+..||..|..++||+...+..||..+||++++|++||||||+++|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999975
No 5
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.74 E-value=6.5e-18 Score=122.50 Aligned_cols=66 Identities=29% Similarity=0.424 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHHH
Q 027468 32 SFGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIER 97 (223)
Q Consensus 32 s~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~~ 97 (223)
..++++.|++|+..|+..||..|..++||+...+..||..|||+++||++||||||+|+|+.+.+.
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 344566788999999999999999999999999999999999999999999999999999876654
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=3.9e-18 Score=121.48 Aligned_cols=63 Identities=22% Similarity=0.428 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 32 SFGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 32 s~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
....+++|++|+..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 345567889999999999999999999999999999999999999999999999999999754
No 7
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=5.7e-18 Score=120.49 Aligned_cols=62 Identities=26% Similarity=0.560 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
...++.|++|+..|+..||..|..++||+..++..||..|||++.||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34567889999999999999999999999999999999999999999999999999999754
No 8
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.73 E-value=1e-17 Score=121.52 Aligned_cols=64 Identities=28% Similarity=0.347 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 32 SFGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 32 s~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
....++.|++|+..|+..||..|..++||+..++..||..|||+++||++||||||+++|+...
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 3445668899999999999999999999999999999999999999999999999999998654
No 9
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=7.2e-18 Score=120.09 Aligned_cols=62 Identities=34% Similarity=0.495 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
...++.|++|+..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34566889999999999999999999999999999999999999999999999999999864
No 10
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=4.5e-18 Score=123.62 Aligned_cols=63 Identities=29% Similarity=0.492 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 32 SFGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 32 s~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
....++.|++|+.+|+.+||..|..++||+..++..||..|||++.+|++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 445567889999999999999999999999999999999999999999999999999999864
No 11
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8.9e-18 Score=122.62 Aligned_cols=62 Identities=27% Similarity=0.407 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
...++.|+.|+..|+.+||..|..++||+..++..||..|||+++||++||||||+|+|+..
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 44566788999999999999999999999999999999999999999999999999999753
No 12
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=8.4e-18 Score=122.43 Aligned_cols=63 Identities=22% Similarity=0.492 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
...++.|++|+..|+..||..|..++||+..++..||..|||++++|++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999998643
No 13
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=6.4e-18 Score=115.84 Aligned_cols=57 Identities=30% Similarity=0.487 Sum_probs=54.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 36 GNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 36 ~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
+++|+.||..|+..||..|..++||+..++..||..+||++.+|++||||||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467899999999999999999999999999999999999999999999999999986
No 14
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=4.7e-18 Score=120.81 Aligned_cols=62 Identities=26% Similarity=0.541 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
...++.|++|+..|+.+||..|..++||+..++..||..|||++.+|++||||||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 44566889999999999999999999999999999999999999999999999999999754
No 15
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.73 E-value=8e-18 Score=123.60 Aligned_cols=64 Identities=27% Similarity=0.371 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 31 ASFGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 31 ~s~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
.....++.|+.|+..|+.+||..|..++||+..++..||..|||++++|++||||||+|+|+.+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 3345566889999999999999999999999999999999999999999999999999999864
No 16
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.73 E-value=6.2e-18 Score=119.86 Aligned_cols=62 Identities=27% Similarity=0.438 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 34 GTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 34 ~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
+.++.|+.|+..|+..||..|..++||+...+..||..|||++++|++||||||+++|+...
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 1 GPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 35678999999999999999999999999999999999999999999999999999998654
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.73 E-value=4.7e-18 Score=117.86 Aligned_cols=58 Identities=34% Similarity=0.591 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 35 TGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 35 ~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
.++.|+.|+..|+..||..|..++||+..++..||..+||++.+|++||||||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4678899999999999999999999999999999999999999999999999999986
No 18
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.73 E-value=7.1e-18 Score=115.11 Aligned_cols=58 Identities=36% Similarity=0.523 Sum_probs=55.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 34 GTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 34 ~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
++++.|++|+..|+..||..|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 1 g~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 1 GRRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CcCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 3567899999999999999999999999999999999999999999999999999976
No 19
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=8.3e-18 Score=122.67 Aligned_cols=63 Identities=25% Similarity=0.511 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
...++.|++|+..|+.+||..|..++||+..++..||..|||++++|++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 445678899999999999999999999999999999999999999999999999999998653
No 20
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.6e-18 Score=119.94 Aligned_cols=62 Identities=29% Similarity=0.410 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
...++.|++|+..|+.+||..|..++||+..++..||..|||++++|++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 44567889999999999999999999999999999999999999999999999999999753
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.72 E-value=6.4e-18 Score=120.10 Aligned_cols=62 Identities=23% Similarity=0.450 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
...++.|++|+..|+.+||..|..++||+..++..||..|||++.+|++||||||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 44567889999999999999999999999999999999999999999999999999999754
No 22
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.72 E-value=4.7e-18 Score=119.63 Aligned_cols=60 Identities=30% Similarity=0.669 Sum_probs=57.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 35 TGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 35 ~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
+++.|+.|+..|+..||..|..++||+..++..||..+||++.+|++||||||+++|++.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 567899999999999999999999999999999999999999999999999999999864
No 23
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.3e-17 Score=119.36 Aligned_cols=59 Identities=24% Similarity=0.476 Sum_probs=55.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 36 GNNKRRFSDEQVKSLEFMFES-EARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 36 ~r~R~rft~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
.++|++|+..|+.+||..|.. ++||+...+..||..|||+++||++||||||+++|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999864
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.72 E-value=1.5e-17 Score=119.46 Aligned_cols=62 Identities=26% Similarity=0.446 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
..+++.|++|+..|+..||..|..++||+..++..||..+||+++||++||||||+++|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 34567889999999999999999999999999999999999999999999999999999753
No 25
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.71 E-value=8.8e-18 Score=123.10 Aligned_cols=63 Identities=29% Similarity=0.407 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 32 SFGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 32 s~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
....++.|++|+..|+..||..|..++||+...+..||..|||++++|++||||||+|+|+..
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 344566889999999999999999999999999999999999999999999999999999864
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.71 E-value=1e-17 Score=115.76 Aligned_cols=58 Identities=26% Similarity=0.469 Sum_probs=55.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhH
Q 027468 36 GNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTK 93 (223)
Q Consensus 36 ~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krk 93 (223)
++.|+.||..|+..||..|..++||+..++..||..+||++.+|++||||||+++|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 4678999999999999999999999999999999999999999999999999999874
No 27
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.71 E-value=7.7e-18 Score=127.12 Aligned_cols=71 Identities=23% Similarity=0.370 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHH
Q 027468 26 MQQPIASFGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIE 96 (223)
Q Consensus 26 ~~~p~~s~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~ 96 (223)
...|.+..+++++|++|+..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+.++.
T Consensus 16 ~~~p~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 16 FQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp -----------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 34455666677889999999999999999999999999999999999999999999999999999997653
No 28
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.71 E-value=8.6e-18 Score=119.24 Aligned_cols=60 Identities=28% Similarity=0.450 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 35 TGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 35 ~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
+++.|++||..|+..||..|..++||+...+..||..+||++++|++||||||+++|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 466889999999999999999999999999999999999999999999999999999864
No 29
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.71 E-value=2e-17 Score=120.94 Aligned_cols=63 Identities=27% Similarity=0.504 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
.+.++.|++|+..|+.+||..|..++||+..++..||..|||++.||++||||||+|+|++..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 445667899999999999999999999999999999999999999999999999999998653
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.71 E-value=1.6e-17 Score=117.75 Aligned_cols=61 Identities=31% Similarity=0.458 Sum_probs=57.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 35 TGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 35 ~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
+++.|++||..|+..||..|..++||+...+..||..|||++.+|++||||||+++|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 4567899999999999999999999999999999999999999999999999999998643
No 31
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=5.6e-18 Score=121.95 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhH
Q 027468 29 PIASFGTGNNKRRFSDEQVKSLEFMF-ESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTK 93 (223)
Q Consensus 29 p~~s~~~~r~R~rft~~Ql~~LE~~F-~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krk 93 (223)
|.+...+.+.+++++..|+..||..| ..++||+...+.+||..|||+++||+|||||||+++|+.
T Consensus 2 P~~~~~g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 2 SSGSSGGIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CccccCCCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 66677778889999999999999999 999999999999999999999999999999999999974
No 32
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-17 Score=118.86 Aligned_cols=62 Identities=26% Similarity=0.490 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
.++++.|++|+..|+..||..|..++||+..++..||..|||++.+|++||||||+++|++.
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 44566789999999999999999999999999999999999999999999999999999854
No 33
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.71 E-value=6.6e-18 Score=119.63 Aligned_cols=62 Identities=23% Similarity=0.490 Sum_probs=57.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 34 GTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 34 ~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
..++.|++|+..|+..||..|..++||+..++..||..|||++.+|++||||||+++|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 34678899999999999999999999999999999999999999999999999999998654
No 34
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.70 E-value=2e-17 Score=121.36 Aligned_cols=60 Identities=17% Similarity=0.356 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFES----EARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~----~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
..++|.|+.||.+|+..||..|+. ++||+...+.+||..|||++++|+|||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 455678899999999999999999 999999999999999999999999999999999875
No 35
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.70 E-value=1.7e-17 Score=117.08 Aligned_cols=61 Identities=30% Similarity=0.551 Sum_probs=57.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHH
Q 027468 36 GNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIE 96 (223)
Q Consensus 36 ~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~ 96 (223)
+++|++|+..|+.+||..|..++||+...+..||..+||++.+|++||||||+++|++..+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 5788999999999999999999999999999999999999999999999999999986543
No 36
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=112.99 Aligned_cols=54 Identities=31% Similarity=0.446 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhH
Q 027468 40 RRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTK 93 (223)
Q Consensus 40 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krk 93 (223)
+.|+..|+..||..|..++||+..++..||..+||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999975
No 37
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-17 Score=118.90 Aligned_cols=59 Identities=20% Similarity=0.423 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 36 GNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 36 ~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
.++|++||..|+..||..|..++||+..++..||..|||++++|++||||||+++|++.
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 35677899999999999999999999999999999999999999999999999999864
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=3.3e-17 Score=117.63 Aligned_cols=59 Identities=24% Similarity=0.436 Sum_probs=55.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 36 GNNKRRFSDEQVKSLEFMFES-EARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 36 ~r~R~rft~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
.++|++|+..|+.+||..|.. ++||+..++..||..+||++++|++||||||+++|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999995 99999999999999999999999999999999999865
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.70 E-value=1.8e-17 Score=114.53 Aligned_cols=57 Identities=26% Similarity=0.548 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 38 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 38 ~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
.|++||..|+..||..|..++||+..++..||..+||++++|++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 468999999999999999999999999999999999999999999999999999754
No 40
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=121.30 Aligned_cols=62 Identities=19% Similarity=0.335 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESE----ARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~----~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
.+.++.|+.|+.+|+.+||..|..+ +||+..++..||..|||++++|+|||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 4556788999999999999999999 9999999999999999999999999999999999854
No 41
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.69 E-value=1.9e-17 Score=114.57 Aligned_cols=58 Identities=34% Similarity=0.509 Sum_probs=48.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 34 GTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 34 ~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
+.++.|++|+..|+.+||..|..++||+..++..||..+||++.||++||||||+++|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 3456788999999999999999999999999999999999999999999999999975
No 42
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.9e-17 Score=119.80 Aligned_cols=59 Identities=20% Similarity=0.318 Sum_probs=55.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 37 NNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 37 r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
..|.+||.+|+.+|+..|..++||+..++.+||..+||++.||++||||||+|+|+.++
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999998654
No 43
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.69 E-value=2.3e-17 Score=122.50 Aligned_cols=62 Identities=29% Similarity=0.413 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
...++.|++|+..|+..||..|..++||+..++..||..|||++++|++||||||+|+|+..
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 34566889999999999999999999999999999999999999999999999999999753
No 44
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=118.66 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 35 TGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 35 ~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
..+.|++||..|+.+||..|..++||+..++..||..+||++++|++||||||+|+|+..
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 344689999999999999999999999999999999999999999999999999999854
No 45
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.68 E-value=5.9e-17 Score=116.27 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 34 GTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 34 ~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
..++.|+.|+..|+..||..|..++||+..++..||..+||+++||++||||||+++|+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 3456789999999999999999999999999999999999999999999999999999864
No 46
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.68 E-value=4.5e-17 Score=119.60 Aligned_cols=60 Identities=17% Similarity=0.343 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 32 SFGTGNNKRRFSDEQVKSLEFMFES-----EARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 32 s~~~~r~R~rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
...++|.|+.||.+|+..|| .|.. ++||+...+.+||..|||++++|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 34556688999999999999 7999 999999999999999999999999999999999875
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=8.3e-17 Score=115.30 Aligned_cols=63 Identities=19% Similarity=0.224 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFES---EARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
...++.|++|+..|+.+|+..|.. ++||+..++..||..+||++.||++||||||+|+|+..+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 345667889999999999999987 999999999999999999999999999999999998654
No 48
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.67 E-value=7.6e-17 Score=121.75 Aligned_cols=63 Identities=27% Similarity=0.402 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
...++.|+.|+..|+..||..|..++||+..++..||..|||+++||++||||||+|+|+...
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 344567899999999999999999999999999999999999999999999999999998653
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.67 E-value=5.4e-17 Score=116.31 Aligned_cols=61 Identities=30% Similarity=0.468 Sum_probs=57.4
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHH
Q 027468 36 GNNKRRFSDEQVKSLEFMF---ESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIE 96 (223)
Q Consensus 36 ~r~R~rft~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~ 96 (223)
+++|++|+..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 5678999999999999999 899999999999999999999999999999999999986654
No 50
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.66 E-value=1.1e-16 Score=110.43 Aligned_cols=56 Identities=25% Similarity=0.417 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhH
Q 027468 38 NKRRFSDEQVKSLEFMFES---EARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTK 93 (223)
Q Consensus 38 ~R~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krk 93 (223)
++++|+..|+.+|+..|.. ++||+..++..||..+||++.||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 3678999999999999999 9999999999999999999999999999999999863
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=6.2e-17 Score=113.10 Aligned_cols=58 Identities=29% Similarity=0.440 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 35 TGNNKRRFSDEQVKSLEFMF---ESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 35 ~~r~R~rft~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
+++.|++|+..|+.+|+..| ..++||+..++..||..+||++.||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999 89999999999999999999999999999999999986
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2.2e-16 Score=118.33 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 39 KRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 39 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
.++||.+|+..||..|..++||+..++.+||..|||+++||+|||||||+|+|++.
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 34899999999999999999999999999999999999999999999999998754
No 53
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=2e-16 Score=119.00 Aligned_cols=63 Identities=17% Similarity=0.335 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------CCcchhhhhhhhhHhhhhhHHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELG---------------LQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~Lg---------------L~~rQVkiWFQNRRar~Krkq~ 95 (223)
.++++.|+.|+..|+.+||..|..++||+..++..||..|| |++.+|++||||||+++|++..
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 45567889999999999999999999999999999999999 9999999999999999998654
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=1.9e-16 Score=116.90 Aligned_cols=61 Identities=30% Similarity=0.468 Sum_probs=56.9
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHH
Q 027468 36 GNNKRRFSDEQVKSLEFMF---ESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIE 96 (223)
Q Consensus 36 ~r~R~rft~~Ql~~LE~~F---~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~ 96 (223)
+|+|++|+..|+.+|+.+| ..++||+..++..||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5678999999999999999 899999999999999999999999999999999999987654
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=114.92 Aligned_cols=63 Identities=24% Similarity=0.315 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFES---EARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
.+++++|++|+..|+.+|+.+|.. ++||+..++..||..+||++.||++||||||+|+|+..+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 445667889999999999999987 599999999999999999999999999999999987544
No 56
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.65 E-value=1.9e-16 Score=117.25 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 32 SFGTGNNKRRFSDEQVKSLEFMFES---EARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 32 s~~~~r~R~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
...++++|++|+..|+.+|+..|.. ++||+..++..||..+||+++||++||||||+|+|.
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4455667899999999999999999 999999999999999999999999999999999873
No 57
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.64 E-value=1.4e-16 Score=117.22 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=56.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHHHH
Q 027468 36 GNNKRRFSDEQVKSLEFMFES---EARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIERE 98 (223)
Q Consensus 36 ~r~R~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~~e 98 (223)
.+++++|+..|+.+|+..|.. ++||+..++..||..+||++.||++||||||+|+|+.....+
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~~~ 68 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPE 68 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccCHH
Confidence 345677999999999999999 999999999999999999999999999999999998755433
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=5.4e-16 Score=115.65 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=53.2
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 38 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 38 ~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
++++||..|+.+||..|..++||+..++..||..+||++++|++||||||+|+|++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 445699999999999999999999999999999999999999999999999998753
No 59
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.61 E-value=4e-16 Score=126.19 Aligned_cols=61 Identities=31% Similarity=0.463 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTK 93 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krk 93 (223)
.+++|+|+.|+..|+..||..|..++||+..++..||..+||++++|++||||||+|+|++
T Consensus 85 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 85 ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4456678999999999999999999999999999999999999999999999999999975
No 60
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.60 E-value=5.5e-16 Score=110.93 Aligned_cols=56 Identities=36% Similarity=0.525 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 40 RRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 40 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
..+|..|+..||..|..++||+...+..||..+||+++||++||||||+|+|+++.
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 45889999999999999999999999999999999999999999999999998754
No 61
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2.3e-15 Score=115.39 Aligned_cols=64 Identities=19% Similarity=0.340 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHh---------------------CCCcchhhhhhhhhHhhh
Q 027468 32 SFGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADEL---------------------GLQPRQVAIWFQNKRARS 90 (223)
Q Consensus 32 s~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~L---------------------gL~~rQVkiWFQNRRar~ 90 (223)
+.+.+|.|+.|++.|+.+||..|..++||+..+|++||..| +|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 34567789999999999999999999999999999999999 799999999999999999
Q ss_pred hhHHH
Q 027468 91 KTKQI 95 (223)
Q Consensus 91 Krkq~ 95 (223)
|+++.
T Consensus 83 kr~~~ 87 (102)
T 2da6_A 83 AFRQK 87 (102)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 87643
No 62
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=108.51 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHH
Q 027468 42 FSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQ 94 (223)
Q Consensus 42 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq 94 (223)
-+.+|+..||..|..++||+..++.+||..+||+.+||++||||||+++|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999754
No 63
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.60 E-value=1.3e-15 Score=123.44 Aligned_cols=60 Identities=25% Similarity=0.471 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
.+++|+|++|+..|+..||..|..++||+..++..||..+||+++||++||||||+|+|+
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 345667889999999999999999999999999999999999999999999999999986
No 64
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.60 E-value=7.1e-16 Score=126.32 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTK 93 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krk 93 (223)
.+++|+|+.|+..|+..||..|..++||+..++..||..+||++++|+|||||||+|+|++
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 3556688999999999999999999999999999999999999999999999999999974
No 65
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=1.7e-15 Score=108.11 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 32 SFGTGNNKRRFSDEQVKSLEFMFES-EARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 32 s~~~~r~R~rft~~Ql~~LE~~F~~-~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
...++|.|+.|+.+|+.+|+.+|+. ++||+.+.|..||.++||++++|++||||||--.+
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 3456778999999999999999999 99999999999999999999999999999997544
No 66
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.59 E-value=7.6e-16 Score=126.89 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
.+++|+|++|+..|+..||..|..++||+..++..||..+||++++|+|||||||+|+|+...
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 455667899999999999999999999999999999999999999999999999999998654
No 67
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=106.69 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 40 RRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 40 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
..++..|+..||..|..++||+..++..||..|||++++|++||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 44678999999999999999999999999999999999999999999999875
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=7.6e-16 Score=108.77 Aligned_cols=50 Identities=20% Similarity=0.444 Sum_probs=46.7
Q ss_pred HHHHHHHHHHH-hhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhH
Q 027468 44 DEQVKSLEFMF-ESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTK 93 (223)
Q Consensus 44 ~~Ql~~LE~~F-~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krk 93 (223)
+.|+..||..| ..++||+..++.+||.+|||+++||+|||||||+++|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 56899999999 578999999999999999999999999999999999863
No 69
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=1.8e-15 Score=107.16 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHHHHHH
Q 027468 40 RRFSDEQVKSLEFMFE---SEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIEREYT 100 (223)
Q Consensus 40 ~rft~~Ql~~LE~~F~---~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~~e~~ 100 (223)
.+|+.+|+.+|+..|. .++||+..++..||..+||++.||++||||||+|+|+..+++.++
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~~~ 66 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNR 66 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC------
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHhcc
Confidence 4799999999999999 999999999999999999999999999999999999987766554
No 70
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.56 E-value=1.7e-15 Score=115.42 Aligned_cols=63 Identities=19% Similarity=0.362 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHH------------------hC---CCcchhhhhhhhhHhhhh
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADE------------------LG---LQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~------------------Lg---L~~rQVkiWFQNRRar~K 91 (223)
.+.++.|+.|+..|+.+||..|..++||+...|.+||.. || |++.+|++||||||++.|
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~k 86 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 86 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHHH
Confidence 344567889999999999999999999999999999999 88 999999999999999998
Q ss_pred hHHH
Q 027468 92 TKQI 95 (223)
Q Consensus 92 rkq~ 95 (223)
+++.
T Consensus 87 ~k~~ 90 (99)
T 1lfb_A 87 FRHK 90 (99)
T ss_dssp CCC-
T ss_pred Hhch
Confidence 8764
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.56 E-value=2.7e-15 Score=122.34 Aligned_cols=61 Identities=26% Similarity=0.481 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTK 93 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krk 93 (223)
.+++|+|++|+..|+..||..|..++||+..++..||..+||++++|+|||||||+|+|+.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 3556688999999999999999999999999999999999999999999999999999973
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.54 E-value=4.2e-15 Score=121.72 Aligned_cols=63 Identities=27% Similarity=0.449 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQI 95 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~ 95 (223)
...+|.|+.|+..|+..|+..|..++||+...+..||..|||+++||++||||||+|+|+...
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 455678899999999999999999999999999999999999999999999999999997543
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.37 E-value=8.5e-13 Score=98.75 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHHH
Q 027468 40 RRFSDEQVKSLEFMFES---EARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIER 97 (223)
Q Consensus 40 ~rft~~Ql~~LE~~F~~---~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~~ 97 (223)
..|+..++.+|+.+|.. ++||+..+|.+||..+||++.||++||+|+|.|.++...++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46899999999999987 89999999999999999999999999999999998765543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.32 E-value=4.2e-13 Score=113.43 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCcchhhhhhhhhHhhhh
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELG---------------------LQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~Lg---------------------L~~rQVkiWFQNRRar~K 91 (223)
.+.+|.|+.|+..|+..|+..|..++||+...|++||..|+ |++.+|++||||||++.|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 44566788999999999999999999999999999999999 999999999999999987
Q ss_pred h
Q 027468 92 T 92 (223)
Q Consensus 92 r 92 (223)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=93.04 Aligned_cols=47 Identities=17% Similarity=0.403 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhh
Q 027468 44 DEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARS 90 (223)
Q Consensus 44 ~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~ 90 (223)
.+|+.+|+.+|..+++|+.+++..||..+||+.+.|++||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 57899999999999999999999999999999999999999999853
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.21 E-value=1.1e-11 Score=106.63 Aligned_cols=59 Identities=15% Similarity=0.333 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhC---------------------CCcchhhhhhhhhHhhh
Q 027468 32 SFGTGNNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELG---------------------LQPRQVAIWFQNKRARS 90 (223)
Q Consensus 32 s~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~Lg---------------------L~~rQVkiWFQNRRar~ 90 (223)
..+.+|.|+.|++.|+.+|+..|..++||+..+|++||..|| |++.+|++||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 345566788899999999999999999999999999999988 89999999999999874
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.21 E-value=6.2e-12 Score=113.25 Aligned_cols=54 Identities=35% Similarity=0.525 Sum_probs=51.5
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 38 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 38 ~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
.++.++..|+..|+..|+.++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 366799999999999999999999999999999999999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.70 E-value=5.8e-10 Score=70.40 Aligned_cols=25 Identities=36% Similarity=0.668 Sum_probs=21.2
Q ss_pred chhhhhhhhhHhhhhhHHHHHHHHH
Q 027468 77 RQVAIWFQNKRARSKTKQIEREYTK 101 (223)
Q Consensus 77 rQVkiWFQNRRar~Krkq~~~e~~~ 101 (223)
+||+|||||||+|||+++.+..++.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~~~ 25 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDARDI 25 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTTTS
T ss_pred CCceeccHHHHHHHHHHhHHHHHHH
Confidence 5899999999999999888765543
No 79
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.68 E-value=0.28 Score=35.94 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=36.1
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027468 86 KRARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGKGHE 139 (223)
Q Consensus 86 RRar~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~~~ 139 (223)
+|+|.+++..+. .+......|..+|..|+.+.+.|..|+..|+..+...+.
T Consensus 28 rrSR~krk~r~~---e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 28 RKSRDKAKMRNL---ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 455555554443 344566778888999999999999999999998886554
No 80
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.64 E-value=0.065 Score=37.89 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=36.9
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhh
Q 027468 47 VKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQN 85 (223)
Q Consensus 47 l~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQN 85 (223)
..+|+.+|...+.+.......|+.+..|+..||+-||--
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 579999999999999999999999999999999999954
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=93.22 E-value=0.22 Score=35.82 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=32.7
Q ss_pred hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027468 86 KRARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGKG 137 (223)
Q Consensus 86 RRar~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~ 137 (223)
+|+|.|+++.+.+ +......|..+|..|+.+.+.|..|+..|+..+...
T Consensus 28 krSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 28 RKSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4556665554443 345566777888888888888888888888776543
No 82
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=92.91 E-value=0.61 Score=31.47 Aligned_cols=40 Identities=28% Similarity=0.237 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 96 EREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 96 ~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
......|....+.|..+|..|..+...|..|+..|+.+|.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667778888888999999999999999999988875
No 83
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=92.70 E-value=0.63 Score=31.82 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 96 EREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 96 ~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
......|....+.|..+|..|+.+...|..|+..|++.|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677778888888899999999999999999988874
No 84
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=92.03 E-value=0.84 Score=31.08 Aligned_cols=41 Identities=24% Similarity=0.261 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 96 EREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 96 ~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
......|....+.|..+|..|..+...|..|+..|+..|..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777888888888888999999999999999888753
No 85
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=89.94 E-value=0.64 Score=31.50 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 97 REYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 97 ~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.....|....+.|..++..|..+...|..|+..|+.+|.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666667777777777777777777777776654
No 86
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=89.80 E-value=0.11 Score=37.29 Aligned_cols=45 Identities=16% Similarity=0.386 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhCCCcchhhhhhhhhH
Q 027468 39 KRRFSDEQVKSLEFMFESE-ARPESRMKHRMADELGLQPRQVAIWFQNKR 87 (223)
Q Consensus 39 R~rft~~Ql~~LE~~F~~~-~~p~~~~r~~LA~~LgL~~rQVkiWFQNRR 87 (223)
|+.|+.++....-..+... .. ....+|..+|+++..|..|...-+
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHHHh
Confidence 3568888765554444322 21 255789999999999999985433
No 87
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=89.64 E-value=1.4 Score=30.87 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 96 EREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 96 ~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
+..+..|......|...+..+..|++.|+.++..|..++.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445455555555555566666666666666665543
No 88
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.60 E-value=1.1 Score=29.82 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 105 EFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 105 ~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.++.|+.++..|+.++..|..+++.|+.++.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555556666655554
No 89
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=86.98 E-value=3.7 Score=29.64 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 92 TKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLL 134 (223)
Q Consensus 92 rkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~ 134 (223)
...++.+.+.||..+..|..++..++.....|..++++|+++.
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445566667777777766666665554455666666665544
No 90
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=86.24 E-value=6.8 Score=28.72 Aligned_cols=65 Identities=18% Similarity=0.106 Sum_probs=43.2
Q ss_pred CCCcchhhhhhhhhHhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027468 73 GLQPRQVAIWFQNKRARS-------KTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGKG 137 (223)
Q Consensus 73 gL~~rQVkiWFQNRRar~-------Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~ 137 (223)
||+..+|..+=|-||.-. -+.....+...|..+...|..+.+.|+.|+..+..|...++..+...
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777776665555321 12333355566667777777788888888888888888888777654
No 91
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=86.03 E-value=1.2 Score=29.56 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 96 EREYTKLKAEFETLASSYELMRREHQLLLVQLQ 128 (223)
Q Consensus 96 ~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~ 128 (223)
..+++.|+.+++.|+.++..|+++++.|..++.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368888999999999999999999888888765
No 92
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=85.95 E-value=1.8 Score=26.19 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 108 TLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 108 ~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
.|-...+.|-.+|..|..||.+|++.+..
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 35566778889999999999999998853
No 93
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.45 E-value=1.7 Score=26.20 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 109 LASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 109 L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
|-...+.|-.+|..|..|+.+|++.+..
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 5566778888999999999999998753
No 94
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=84.88 E-value=2.1 Score=25.72 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 108 TLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 108 ~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.|-...+.|-.+|..|..|+.+|+..+.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3455667888899999999999999885
No 95
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=84.28 E-value=2 Score=30.09 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 91 KTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLK 131 (223)
Q Consensus 91 Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~ 131 (223)
..+.++.....|...+..|..++..|+.++..|..|+..|+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566777778888888888899999999999999988764
No 96
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=83.71 E-value=2.5 Score=25.52 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 108 TLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 108 ~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.|-...+.|-.++..|..||.+|+..+.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3555677888899999999999999885
No 97
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.63 E-value=4.9 Score=26.87 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=22.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 88 ARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQ 126 (223)
Q Consensus 88 ar~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e 126 (223)
.+.+...++.....|..++..|..+...|..|+..|+..
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555666666666666666666666666544
No 98
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=83.50 E-value=2.6 Score=25.82 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 108 TLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 108 ~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
.|....+.|..++..|..||.+|+..+..
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 45667788888999999999999998864
No 99
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=83.38 E-value=4.6 Score=26.58 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 96 EREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 96 ~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
+.....++..++.|...|..|.......+.|+..|+++|.+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677777888888888888888888888888888765
No 100
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=83.37 E-value=4.8 Score=27.37 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 106 FETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 106 ~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.+.|..+...|..+|..|..++..|+++|.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556667777888888888888888765
No 101
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=81.25 E-value=7.3 Score=25.35 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027468 96 EREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGKG 137 (223)
Q Consensus 96 ~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~ 137 (223)
+.....||..|+.|......|+.-+..+..|+.+|+..|...
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqH 44 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQN 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHc
Confidence 455678999999999999999999999999999999888643
No 102
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=80.72 E-value=7.1 Score=25.78 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 104 AEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 104 ~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.+.+.|-.+...|..||..|..++..|++++.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455666777888888888888888877654
No 103
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=80.23 E-value=3.3 Score=25.06 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 109 LASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 109 L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
|-...+.|-.++..|..|+.+|+..|.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 455667888899999999999999875
No 104
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=79.51 E-value=4.3 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 108 TLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 108 ~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
.|-...+.|..++..|..||.+|+..+..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 35566778888999999999999998763
No 105
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=79.40 E-value=9 Score=25.79 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 92 TKQIEREYTKLKAEFETLASSYELMRREHQLLLVQ 126 (223)
Q Consensus 92 rkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e 126 (223)
...++.+...|..++..|..+...|..+...|...
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555443
No 106
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=78.70 E-value=5.6 Score=28.94 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 91 KTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNL 133 (223)
Q Consensus 91 Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~ 133 (223)
+-..++.....|..+|..|+.+...|+.|...|+.-+..+-..
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 3334444455555555555555555555555555444444333
No 107
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=78.02 E-value=4.9 Score=24.26 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 109 LASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 109 L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
|-...+.|-.++..|..|+.+|+..|..
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 4456677888899999999999998753
No 108
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.92 E-value=12 Score=25.33 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=26.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 88 ARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQL 127 (223)
Q Consensus 88 ar~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~ 127 (223)
.+.+...++.+.+.|..++..|..+...|..|++.|+.-+
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566677777777777777777777777776544
No 109
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=76.64 E-value=7.1 Score=26.15 Aligned_cols=43 Identities=21% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027468 95 IEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGKG 137 (223)
Q Consensus 95 ~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~ 137 (223)
.+.....||+.+..|......|+..+-....|+.+|+..|...
T Consensus 9 se~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqH 51 (58)
T 3a2a_A 9 SERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQH 51 (58)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556778999999999999999999999999999999888754
No 110
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=76.45 E-value=6.2 Score=23.81 Aligned_cols=28 Identities=21% Similarity=0.282 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 108 TLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 108 ~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.|....+.|-.+|..|..|+.+|+..+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3556677888889999999999999875
No 111
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=76.36 E-value=3.1 Score=27.04 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhh
Q 027468 39 KRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQ 84 (223)
Q Consensus 39 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQ 84 (223)
++.|+.+........+... ........++|..+|+++..|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 4578888766665555433 22122256899999999999999964
No 112
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=75.10 E-value=7 Score=28.85 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhh
Q 027468 38 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRAR 89 (223)
Q Consensus 38 ~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar 89 (223)
+|+++|.++...+-..+..+..+.. .++|..+|++...|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 5678999998777666655555443 358999999999999999876653
No 113
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.69 E-value=15 Score=28.72 Aligned_cols=43 Identities=21% Similarity=0.186 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 94 QIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 94 q~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
...++...|+.+...+...++.+.+++..|+.++..|+.++.+
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555443
No 114
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=72.91 E-value=5.6 Score=26.67 Aligned_cols=35 Identities=9% Similarity=0.123 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027468 103 KAEFETLASSYELMRREHQLLLVQLQKLKNLLGKG 137 (223)
Q Consensus 103 k~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~ 137 (223)
+...+.|......|..+|..|..++..|+.++...
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677777777777777777666543
No 115
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=71.94 E-value=12 Score=25.98 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=30.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhh
Q 027468 37 NNKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQ 84 (223)
Q Consensus 37 r~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQ 84 (223)
+.++.++.++....-..+... . ...++|+.+|++...|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 456688998865554555432 2 245789999999999999974
No 116
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=71.24 E-value=12 Score=27.03 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 104 AEFETLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 104 ~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
.+|..|..+.+.++.|+..|+.++..|++....
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777888888888888888776653
No 117
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=70.54 E-value=10 Score=22.83 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 108 TLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 108 ~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
.|....+.|-.++..|..|+.+|+..|+.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 35566778888999999999999998863
No 118
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=70.38 E-value=4 Score=27.15 Aligned_cols=29 Identities=17% Similarity=0.387 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 106 FETLASSYELMRREHQLLLVQLQKLKNLL 134 (223)
Q Consensus 106 ~~~L~~~~~~l~~e~~~L~~e~~~L~~~~ 134 (223)
++.+...++.|.+|+..|+.++..|+++|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555666666777777777777776543
No 119
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=70.27 E-value=11 Score=22.63 Aligned_cols=28 Identities=14% Similarity=0.101 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 108 TLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 108 ~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.|-...+.|-.++..|..|+.+|+..+.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3455667788889999999999999875
No 120
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=69.37 E-value=21 Score=23.36 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 90 SKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKL 130 (223)
Q Consensus 90 ~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L 130 (223)
.+....+.....|...|..|..-....+.+...|+.++.+|
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445677888888899999888888888888888888877
No 121
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.32 E-value=25 Score=25.19 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 89 RSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKL 130 (223)
Q Consensus 89 r~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L 130 (223)
+.....++.+..+|.++++.+++..+.|..++++|+.|...-
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777777777666433
No 122
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=66.97 E-value=6.5 Score=33.99 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 99 YTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 99 ~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
+..|+.+++.|..+|..|+.+...++.|+.+|++++.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555666666666666666666666544
No 123
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=66.74 E-value=11 Score=24.71 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027468 106 FETLASSYELMRREHQLLLVQL 127 (223)
Q Consensus 106 ~~~L~~~~~~l~~e~~~L~~e~ 127 (223)
||.|..+.+.|+.||-.|+.|+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444455555544444444
No 124
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=65.64 E-value=34 Score=24.81 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=35.2
Q ss_pred hhhhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 78 QVAIWFQNKRARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLL 134 (223)
Q Consensus 78 QVkiWFQNRRar~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~ 134 (223)
++..|-+....+.+. .-+.++..|+...+.+..++..+.-+...|..++.+++.+|
T Consensus 38 ~i~~l~~~~~~~~~~-~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 38 ELEQLKGQGKSRLGD-LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhccCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445554433333222 23566777777777777777777777777777777777654
No 125
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=64.81 E-value=10 Score=22.23 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhh
Q 027468 40 RRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQN 85 (223)
Q Consensus 40 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQN 85 (223)
..++..+...+...+... . + ..++|..+|++...|..|...
T Consensus 4 ~~l~~~~~~~i~~~~~~g-~-s---~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN-V-S---LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT-C-C---HHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHhh
Confidence 356777765555555433 2 2 457899999999999999854
No 126
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=64.40 E-value=30 Score=25.81 Aligned_cols=37 Identities=19% Similarity=0.137 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 97 REYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNL 133 (223)
Q Consensus 97 ~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~ 133 (223)
.+...|+......-+....|..+..+|..||++|..+
T Consensus 51 ~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 51 DENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344455666666666666666443
No 127
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=64.20 E-value=17 Score=24.62 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 96 EREYTKLKAEFETLASSYELMRREHQLLLVQLQ 128 (223)
Q Consensus 96 ~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~ 128 (223)
......|....+.|..+|..|..+...|+.++.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777778888888888888888887764
No 128
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=64.05 E-value=11 Score=32.61 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 90 SKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKN 132 (223)
Q Consensus 90 ~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~ 132 (223)
.+-+.++.+...|.+.++.|......++.|...|+.|+.+|+.
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3445678888999999999999999999999999999998864
No 129
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=63.63 E-value=23 Score=26.37 Aligned_cols=34 Identities=24% Similarity=0.182 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027468 105 EFETLASSYELMRREHQLLLVQLQKLKNLLGKGH 138 (223)
Q Consensus 105 ~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~~ 138 (223)
+++.|+.+.++|..|+++|..++..|.-+|....
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~ 46 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRA 46 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666667777777777777777777777776643
No 130
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=63.62 E-value=3.5 Score=35.28 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCC
Q 027468 102 LKAEFETLASSYELMR---REHQLLLVQLQKLKNLLGKGHE 139 (223)
Q Consensus 102 lk~~~~~L~~~~~~l~---~e~~~L~~e~~~L~~~~~~~~~ 139 (223)
++++++.|+.++..|+ .+.+.|+.|+++|+++|.-...
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~~~ 64 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITDS 64 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3344444444444333 3456778899999999885543
No 131
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=63.54 E-value=17 Score=25.37 Aligned_cols=31 Identities=10% Similarity=-0.070 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027468 108 TLASSYELMRREHQLLLVQLQKLKNLLGKGH 138 (223)
Q Consensus 108 ~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~~ 138 (223)
.|..+...|..+++.|+.++..|+.+|...+
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666677777777777777777776543
No 132
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=62.08 E-value=22 Score=25.13 Aligned_cols=37 Identities=14% Similarity=0.031 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027468 102 LKAEFETLASSYELMRREHQLLLVQLQKLKNLLGKGH 138 (223)
Q Consensus 102 lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~~ 138 (223)
-+.....+......|..||..|+.++..|+.++....
T Consensus 34 rk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 34 AKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677788888888888888888776543
No 133
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=61.98 E-value=17 Score=27.12 Aligned_cols=32 Identities=25% Similarity=0.388 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 98 EYTKLKAEFETLASSYELMRREHQLLLVQLQK 129 (223)
Q Consensus 98 e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~ 129 (223)
++..|+...+.|..+++.|++++..|..++.+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555443
No 134
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=61.39 E-value=36 Score=26.43 Aligned_cols=43 Identities=9% Similarity=0.102 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 93 KQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 93 kq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
..++.+.+.+..+...|+++..+++.+.+.+..++..|++++.
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~ 120 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEIN 120 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555555543
No 135
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=59.78 E-value=42 Score=24.01 Aligned_cols=43 Identities=14% Similarity=0.255 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 94 QIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 94 q~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
.+..+....+..+-.+.++....+..|+.|..++.+|+.++..
T Consensus 28 ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 28 SLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666677788888888888877765
No 136
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=58.60 E-value=21 Score=24.72 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 41 RFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 41 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
.++..+..+|...|-... .-.++|..||++...|+.....-|.+.|
T Consensus 37 ~L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr 82 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALR 82 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 367777777777553322 2457899999999999988765444444
No 137
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=57.07 E-value=49 Score=23.47 Aligned_cols=49 Identities=18% Similarity=0.176 Sum_probs=29.8
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 027468 85 NKRARSKTKQIEREYTKLKAEFETLASSYE-------LMRREHQLLLVQLQKLKNL 133 (223)
Q Consensus 85 NRRar~Krkq~~~e~~~lk~~~~~L~~~~~-------~l~~e~~~L~~e~~~L~~~ 133 (223)
+||.+.+-.+...+.++|+.-.+.|+.--. .|+.|...|...+..|+++
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K 68 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKK 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777777777777665443 3444455555555544443
No 138
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=56.87 E-value=64 Score=24.77 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 38 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIEREYTKLKAEFETLASSYELMR 117 (223)
Q Consensus 38 ~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~~e~~~lk~~~~~L~~~~~~l~ 117 (223)
..+.|+..++..|... ...+.+|++...|+..+...+.... ....-...|.. ....+.
T Consensus 51 g~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~~~~~~~--~~~~~~~~l~~-------~~~~l~ 108 (148)
T 3gpv_A 51 GDRIFNEEALKYLEMI-------------LCLKNTGMPIQKIKQFIDWSMEGDS--TILHRLKLMKQ-------QEANVL 108 (148)
T ss_dssp CCEEBCHHHHHHHHHH-------------HHHHTTTCCHHHHHHHHHHHHHCGG--GHHHHHHHHHH-------HHHHHH
T ss_pred CCeecCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHhhhcCCC--CHHHHHHHHHH-------HHHHHH
Confidence 4577999999888543 2347789999998888875433211 11222233333 334444
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 027468 118 REHQLLLVQLQKLKNLLGKG 137 (223)
Q Consensus 118 ~e~~~L~~e~~~L~~~~~~~ 137 (223)
++...|+.....|...+..-
T Consensus 109 ~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 109 QLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555433
No 139
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=56.11 E-value=29 Score=23.74 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=35.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 38 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 38 ~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
.-..+++.+..+|...+. . . .-.++|..+|++...|+....+-+.+.+.
T Consensus 18 ~~~~Lt~~e~~vl~l~~~--g-~---s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 66 (82)
T 1je8_A 18 DVNQLTPRERDILKLIAQ--G-L---PNKMIARRLDITESTVKVHVKHMLKKMKL 66 (82)
T ss_dssp CGGGSCHHHHHHHHHHTT--T-C---CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred HHccCCHHHHHHHHHHHc--C-C---CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 345689999999988542 2 2 24578999999999999888765555554
No 140
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=55.24 E-value=5.7 Score=23.88 Aligned_cols=41 Identities=10% Similarity=0.246 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhh
Q 027468 41 RFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNK 86 (223)
Q Consensus 41 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNR 86 (223)
.++.++...+...+... .+ ..++|..+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g--~s---~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--HP---RQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--CC---HHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC--CC---HHHHHHHHCCCHHHHHHHHHHc
Confidence 35565655555555433 22 4578999999999999998643
No 141
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=55.08 E-value=60 Score=23.83 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 41 RFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 41 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
.+++.+..++...|-... .-.++|..+|+++..|+.+...-|.+.+.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888888764432 23578999999999999998766655544
No 142
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=54.27 E-value=26 Score=21.40 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 104 AEFETLASSYELMRREHQLLLVQLQKLKN 132 (223)
Q Consensus 104 ~~~~~L~~~~~~l~~e~~~L~~e~~~L~~ 132 (223)
++++.|..+.+.-..|..+|+.++..|++
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 34555555555555566666666666653
No 143
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=53.55 E-value=25 Score=28.95 Aligned_cols=37 Identities=5% Similarity=-0.067 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 98 EYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLL 134 (223)
Q Consensus 98 e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~ 134 (223)
..++.+.-++.+...+..|+.++++|+.++++|+.+-
T Consensus 139 p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 139 PAEVIRELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666665544
No 144
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=53.35 E-value=32 Score=24.58 Aligned_cols=29 Identities=31% Similarity=0.469 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 102 LKAEFETLASSYELMRREHQLLLVQLQKL 130 (223)
Q Consensus 102 lk~~~~~L~~~~~~l~~e~~~L~~e~~~L 130 (223)
|+.....+..+.+.|+.+++.|+.+++.|
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333344444444444444444443
No 145
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.73 E-value=41 Score=30.99 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 98 EYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 98 e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
+++.++.+.+.+....+..++....++.|++.++.++.
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~ 575 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK 575 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 33333344444444333333444444444444433333
No 146
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=51.89 E-value=19 Score=20.07 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027468 109 LASSYELMRREHQLLLVQLQKL 130 (223)
Q Consensus 109 L~~~~~~l~~e~~~L~~e~~~L 130 (223)
|+.+...|+-|...|+.|+..|
T Consensus 5 lkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhcc
Confidence 4455555555555555555544
No 147
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=51.81 E-value=48 Score=23.82 Aligned_cols=29 Identities=24% Similarity=0.154 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 105 EFETLASSYELMRREHQLLLVQLQKLKNL 133 (223)
Q Consensus 105 ~~~~L~~~~~~l~~e~~~L~~e~~~L~~~ 133 (223)
+|+.|..+.+.++.|...|+.++..|+..
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555555555555555443
No 148
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=51.34 E-value=55 Score=23.92 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 41 RFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 41 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
.+++.+..++...|-... .-.++|..+|+++..|+.+...-|.+.+.
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 467888888877754332 23578999999999999988765555554
No 149
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=51.14 E-value=28 Score=24.29 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 98 EYTKLKAEFETLASSYELMRREHQLLLVQLQKL 130 (223)
Q Consensus 98 e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L 130 (223)
.+..|+.....|..+.+.|+.++..|+.++..|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666667777777777777777777654
No 150
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=51.12 E-value=17 Score=23.36 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 41 RFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 41 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
.+++.+..+|...|-... .-.++|..+|+++..|+.+...-+.+.+
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 477888888888764332 2357899999999999988765444444
No 151
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=49.70 E-value=35 Score=23.95 Aligned_cols=27 Identities=22% Similarity=0.133 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 109 LASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 109 L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
|..+...+..+++.|+.++..|+.+|.
T Consensus 52 L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 52 LEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555566666666666666666554
No 152
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=49.50 E-value=34 Score=24.61 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 39 KRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 39 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
...+++.+..+|...+.--. -.++|..||+++..|+....+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 45689999999987653222 367899999999999998775555444
No 153
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=49.01 E-value=34 Score=24.06 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 40 RRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 40 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
..+++.+..+|...+.--. ..++|..||++...|+....+-+.+.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4589999999988643222 3578999999999999988765555543
No 154
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=47.20 E-value=58 Score=27.22 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 98 EYTKLKAEFETLASSYELMRREHQLLL 124 (223)
Q Consensus 98 e~~~lk~~~~~L~~~~~~l~~e~~~L~ 124 (223)
+++.|....+.|..+...|+++++.|+
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 155
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=47.12 E-value=96 Score=24.01 Aligned_cols=44 Identities=20% Similarity=0.108 Sum_probs=18.7
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 84 QNKRARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQL 127 (223)
Q Consensus 84 QNRRar~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~ 127 (223)
+|.+.+.+...+..+...+......+...+..|..+.+.|...+
T Consensus 23 ~n~~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n 66 (155)
T 2oto_A 23 QNIRLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQR 66 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45555555445555554444333333333333333333333333
No 156
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=47.00 E-value=43 Score=24.47 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 41 RFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 41 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
.+++.+..++. .|-.. ..-.++|..||++...|+.....-|.+.|
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46677777776 33221 23457899999999999988764444433
No 157
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=46.49 E-value=41 Score=23.61 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 98 EYTKLKAEFETLASSYELMRREHQLLLVQLQKL 130 (223)
Q Consensus 98 e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L 130 (223)
.+..|+.....+..+.+.|+.+++.|+.++++|
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344555666666666667777777777766543
No 158
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=46.16 E-value=93 Score=23.45 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q 027468 98 EYTKLKAEFETLASSY-------ELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 98 e~~~lk~~~~~L~~~~-------~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.+..|+++.+.-+.+| +.+..+++.|+.++..|+.++.
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4555555555555544 5566677777777777766654
No 159
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=46.07 E-value=20 Score=27.34 Aligned_cols=38 Identities=29% Similarity=0.604 Sum_probs=25.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHHHH
Q 027468 47 VKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIERE 98 (223)
Q Consensus 47 l~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~~e 98 (223)
+.++.-.|+.|+||.+. | .+|-+ +|||.|||..+.+-.
T Consensus 15 vRiIkiLyQSNPyP~pe---------G--TRqaR---RNRRRRWR~RQrQI~ 52 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPE---------G--TRQAR---RNRRRRWRERQRQIH 52 (115)
T ss_dssp HHHHHHHHHSSCCCCCC---------C--CTTTH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCC---------C--chhhh---HhHHHHHHHHHHHHH
Confidence 34556669999999865 1 12222 599999997766443
No 160
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=45.92 E-value=67 Score=26.32 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 98 EYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 98 e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
=..-+-..+..|..++..|.++|++|+.|-++..+++.+
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~qlEk 184 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRFEK 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344445556677778888888888888888777776653
No 161
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=45.77 E-value=57 Score=20.91 Aligned_cols=47 Identities=15% Similarity=0.242 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 39 KRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 39 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
...+++.+..+|...+. .+ ...++|..+|+++..|..+...-+.+.+
T Consensus 9 ~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 34588999999988532 22 2457899999999999988876555444
No 162
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=45.74 E-value=94 Score=23.75 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=29.9
Q ss_pred CCcchhhhhhhhhHhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 74 LQPRQVAIWFQNKRARSKTKQI-------EREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 74 L~~rQVkiWFQNRRar~Krkq~-------~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
|.....+.|-+|+=...-+..+ ....+.|+-++..|.........|.++|+.+++-|+..+..
T Consensus 41 l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 41 FQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 3344455566665443333222 23344444444444444444455555555555555555443
No 163
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.67 E-value=37 Score=22.00 Aligned_cols=50 Identities=6% Similarity=0.145 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 41 RFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 41 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
.+++.+..+|...|-...+-. ..-.++|..+|+++..|+.+...-+.+.+
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 478888999988883211111 12356899999999999988765554444
No 164
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=45.43 E-value=55 Score=20.57 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 105 EFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 105 ~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.-..|...+..|.+..-.|+.|++.|++.+.
T Consensus 11 r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3344555666677777778888888877664
No 165
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=45.14 E-value=67 Score=23.33 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=36.6
Q ss_pred hhhhhHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 82 WFQNKRARSK--TKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKL 130 (223)
Q Consensus 82 WFQNRRar~K--rkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L 130 (223)
+-||-|.|.- +..++.+...|..+.+.|+.++..+..|.+.++...+.|
T Consensus 38 yAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 38 YAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444433 345678888899999999999999999998888877665
No 166
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=44.69 E-value=39 Score=19.39 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027468 113 YELMRREHQLLLVQLQKLKNLL 134 (223)
Q Consensus 113 ~~~l~~e~~~L~~e~~~L~~~~ 134 (223)
..+|..|+.+|++.+..|-.++
T Consensus 8 lasleaenkqlkakveellakv 29 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777777777777665554
No 167
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=44.57 E-value=98 Score=25.40 Aligned_cols=43 Identities=12% Similarity=0.200 Sum_probs=18.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 027468 89 RSKTKQIEREYTKLKAEFETLASS----YELMRREHQLLLVQLQKLK 131 (223)
Q Consensus 89 r~Krkq~~~e~~~lk~~~~~L~~~----~~~l~~e~~~L~~e~~~L~ 131 (223)
+.+..++..+.+.+|..|+....+ ...|..+...|+..+..|+
T Consensus 62 ~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 62 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555544444443 2334444444444444433
No 168
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.06 E-value=43 Score=21.97 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 42 FSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 42 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
+++.+..+|..++. .+ + ..++|..+|+++..|+....+-+.+.+.
T Consensus 17 L~~~e~~vl~l~~~--g~-s---~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAVVA--GL-P---NKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHHTT--TC-C---HHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHc--CC-C---HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 67788888877432 22 2 3478999999999999888766655554
No 169
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=42.81 E-value=47 Score=27.30 Aligned_cols=34 Identities=6% Similarity=-0.039 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 100 TKLKAEFETLASSYELMRREHQLLLVQLQKLKNL 133 (223)
Q Consensus 100 ~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~ 133 (223)
+..+.-+.....+...|+.+|..|+.||++|..+
T Consensus 150 E~irELi~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 150 EVIRELICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555566667777777777777777654
No 170
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=42.47 E-value=49 Score=19.20 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 109 LASSYELMRREHQLLLVQLQKLKN 132 (223)
Q Consensus 109 L~~~~~~l~~e~~~L~~e~~~L~~ 132 (223)
|+.+...|++|...|+-|+.-|++
T Consensus 7 lkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444555555566666665554
No 171
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=42.13 E-value=18 Score=25.35 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=24.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhhHHHHH
Q 027468 47 VKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKTKQIER 97 (223)
Q Consensus 47 l~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Krkq~~~ 97 (223)
+.++.-.|+.|+||.++-- +|-. .|||.+|+..+.+.
T Consensus 18 vRiIkiLyQSNP~P~p~GT-----------rqaR---RNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGT-----------RQAR---RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSC-----------HHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCc-----------hHHH---HHHHHHHHHHHHHH
Confidence 4556667999999986521 1111 58999998776543
No 172
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=41.86 E-value=49 Score=23.21 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhh
Q 027468 38 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARS 90 (223)
Q Consensus 38 ~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~ 90 (223)
....+|..+..+|.-.+. .+ ...++|..||++++.|+....+=+.|.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 345699999999988763 22 245789999999999998766544443
No 173
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=41.69 E-value=40 Score=23.85 Aligned_cols=46 Identities=24% Similarity=0.402 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHH-hhC-CCCCH-HHHHHHHHHhCCCcchhhhhhh
Q 027468 39 KRRFSDEQVKSLEFMF-ESE-ARPES-RMKHRMADELGLQPRQVAIWFQ 84 (223)
Q Consensus 39 R~rft~~Ql~~LE~~F-~~~-~~p~~-~~r~~LA~~LgL~~rQVkiWFQ 84 (223)
+++|+.++....-..+ ... .+++. .....+|..+|+++..|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4568888765443333 322 12221 3566899999999999999964
No 174
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=41.64 E-value=46 Score=20.02 Aligned_cols=15 Identities=20% Similarity=0.049 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 027468 118 REHQLLLVQLQKLKN 132 (223)
Q Consensus 118 ~e~~~L~~e~~~L~~ 132 (223)
++.+.|+.++..|.+
T Consensus 14 qDIddlkrQN~~Le~ 28 (34)
T 1a93_B 14 QDIDDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 333333333333333
No 175
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=41.07 E-value=46 Score=25.26 Aligned_cols=51 Identities=12% Similarity=0.238 Sum_probs=37.0
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhCCCCCHHHHHHHH-HHh--CCCcchhhhhhhhh
Q 027468 36 GNNKRRFSDEQVKSLEFMF-ESEARPESRMKHRMA-DEL--GLQPRQVAIWFQNK 86 (223)
Q Consensus 36 ~r~R~rft~~Ql~~LE~~F-~~~~~p~~~~r~~LA-~~L--gL~~rQVkiWFQNR 86 (223)
+++|.++|.+|...+-..+ ..++.....+....| .++ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678899999999999888 677777655433322 277 67778888887653
No 176
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=40.52 E-value=69 Score=23.81 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 104 AEFETLASSYELMRREHQLLLVQLQKLK 131 (223)
Q Consensus 104 ~~~~~L~~~~~~l~~e~~~L~~e~~~L~ 131 (223)
.....|..+.+.|..||+.|..|++.-+
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444566666666777777777766544
No 177
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=40.49 E-value=94 Score=21.89 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027468 105 EFETLASSYELMRREHQLLLVQLQKLKNLLGKGH 138 (223)
Q Consensus 105 ~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~~ 138 (223)
+-+-|+.....|...+..|..||.-|+......+
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~aspEq 49 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLASPEQ 49 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3455666667777778888888888887766544
No 178
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=40.48 E-value=57 Score=21.34 Aligned_cols=48 Identities=8% Similarity=0.075 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 41 RFSDEQVKSLEFMFESE--ARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 41 rft~~Ql~~LE~~F~~~--~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
.+++.+..+|...|-.. .-.+ -.++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s---~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHT---LEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 47888999998888421 1122 347899999999999998765444443
No 179
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=39.03 E-value=1.2e+02 Score=22.61 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=39.8
Q ss_pred hhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027468 84 QNKRARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGKG 137 (223)
Q Consensus 84 QNRRar~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~ 137 (223)
|----|.+-...+..+..++.++.....+++.++.....|+.++..|+++|...
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566666677777777777777778888888888888888888887644
No 180
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=38.68 E-value=1.1e+02 Score=21.98 Aligned_cols=43 Identities=28% Similarity=0.409 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 93 KQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 93 kq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
++++.+|-+.-.+|..|....+.|..|+..|.--+.+|=.+++
T Consensus 29 qqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig 71 (97)
T 1no4_A 29 QQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIG 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhc
Confidence 4667788888888999998889999999999888888866665
No 181
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=38.49 E-value=89 Score=22.17 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 106 FETLASSYELMRREHQLLLVQLQKLKNL 133 (223)
Q Consensus 106 ~~~L~~~~~~l~~e~~~L~~e~~~L~~~ 133 (223)
|..|..+.+.++.+.-.|+.++..|++.
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 182
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=38.10 E-value=57 Score=23.18 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027468 106 FETLASSYELMRREHQLLLVQLQKLKNLLGKGH 138 (223)
Q Consensus 106 ~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~~ 138 (223)
...|..+...+..++..|+.+++.|+.+|..-.
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556667777788888888888888876543
No 183
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=37.18 E-value=79 Score=23.21 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Q 027468 97 REYTKLKAEFETLASSY-------ELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 97 ~e~~~lk~~~~~L~~~~-------~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.....|+++.+.-..+| +.+..+++.|+.++..|+.++.
T Consensus 40 E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~ 85 (94)
T 3jsv_C 40 ETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44455555555555555 4455555555555555554443
No 184
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.61 E-value=60 Score=29.66 Aligned_cols=44 Identities=18% Similarity=0.286 Sum_probs=22.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 87 RARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKL 130 (223)
Q Consensus 87 Rar~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L 130 (223)
.-..|-++++++++.|..+.+.|+.+...++++...++.|+..|
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666666666656555555555555555554444
No 185
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=36.40 E-value=34 Score=23.67 Aligned_cols=47 Identities=9% Similarity=0.167 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 40 RRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 40 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
..+++.+..+|..++. .+. -.++|..+|+++..|+....+-+.+.+.
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GYS----NQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TCC----TTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHHc--CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4588999999987543 222 2368999999999999988766655554
No 186
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.79 E-value=1.2e+02 Score=21.73 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 97 REYTKLKAEFETLASSYELMRREHQLLLVQLQKLKN 132 (223)
Q Consensus 97 ~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~ 132 (223)
.+++.|....+.|..++..|+++++.|+.-....+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~q~ 81 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666677777777777777766665555443
No 187
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.67 E-value=1e+02 Score=27.71 Aligned_cols=30 Identities=7% Similarity=-0.018 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 103 KAEFETLASSYELMRREHQLLLVQLQKLKN 132 (223)
Q Consensus 103 k~~~~~L~~~~~~l~~e~~~L~~e~~~L~~ 132 (223)
++..+....+.+.+++++++++.++..+..
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 434 IRDWDMYQHKETQLAEENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Confidence 333333344444444555555444444433
No 188
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.32 E-value=1.4e+02 Score=24.45 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 027468 94 QIEREYTKLKAEFETLASSYELMRRE----HQLLLVQLQKLKN 132 (223)
Q Consensus 94 q~~~e~~~lk~~~~~L~~~~~~l~~e----~~~L~~e~~~L~~ 132 (223)
.+......|+.+.+.++..+.....+ ...|+.++..|+.
T Consensus 60 ~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~ 102 (189)
T 2v71_A 60 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRA 102 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444333 3344444444443
No 189
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=35.26 E-value=96 Score=22.24 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhc
Q 027468 97 REYTKLKAEFETLASSYELMRREHQLLL---VQLQKLKNLLGK 136 (223)
Q Consensus 97 ~e~~~lk~~~~~L~~~~~~l~~e~~~L~---~e~~~L~~~~~~ 136 (223)
.+++.|....+.+..+...|++++..|+ .+++.|-..+.+
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i~~ 80 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVIER 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666777777666554 344555555443
No 190
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.64 E-value=78 Score=29.07 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 97 REYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 97 ~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
++...+....+..+.....+++|++.+..++++|.+++.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555555555555555555555555555554444
No 191
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=34.63 E-value=1e+02 Score=23.14 Aligned_cols=12 Identities=42% Similarity=0.293 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 027468 123 LLVQLQKLKNLL 134 (223)
Q Consensus 123 L~~e~~~L~~~~ 134 (223)
|..++++++..+
T Consensus 87 lE~eL~~~r~e~ 98 (129)
T 3tnu_B 87 LEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH
Confidence 333444444333
No 192
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=34.59 E-value=1.1e+02 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 108 TLASSYELMRREHQLLLVQLQKLK 131 (223)
Q Consensus 108 ~L~~~~~~l~~e~~~L~~e~~~L~ 131 (223)
.|..+...|..+.+.|+.|+..|+
T Consensus 38 ~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 38 SLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhhhc
Confidence 333333444444555555554443
No 193
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=34.52 E-value=57 Score=22.31 Aligned_cols=49 Identities=4% Similarity=0.023 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 41 RFSDEQVKSLEFMFESE--ARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 41 rft~~Ql~~LE~~F~~~--~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
.+++.+..+|...|-.. .-.+ -.++|..+|++...|+.+...-+.+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s---~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKT---LEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC---HHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCCC---HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 47888888998887421 1122 4468999999999999987655555543
No 194
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=34.37 E-value=73 Score=20.72 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 98 EYTKLKAEFETLASSYELMRREHQLLLVQ 126 (223)
Q Consensus 98 e~~~lk~~~~~L~~~~~~l~~e~~~L~~e 126 (223)
....|-.....|..+|..|..++..|..+
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666554
No 195
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=34.22 E-value=24 Score=30.08 Aligned_cols=39 Identities=18% Similarity=0.370 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 97 REYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 97 ~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
..++.+-.+++.+..+...+..|++.++.++++|+.++.
T Consensus 141 ~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 141 ETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555566666666666666666666666655544
No 196
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=33.18 E-value=1.5e+02 Score=22.19 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 027468 95 IEREYTKLKAEFET 108 (223)
Q Consensus 95 ~~~e~~~lk~~~~~ 108 (223)
+..+.+.+|..|..
T Consensus 15 L~~E~e~~k~K~~~ 28 (111)
T 2v66_B 15 LKYEVEALKEKLEH 28 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 197
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=33.14 E-value=89 Score=23.33 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcc
Q 027468 38 NKRRFSDEQVKSLEFMFES-----EARPESRMKHRMADELGLQPR 77 (223)
Q Consensus 38 ~R~rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~LgL~~r 77 (223)
++..+|.+|+..|...|.. +.+.+..+...+.+.||..+.
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 4567999999999999974 568999998888899997764
No 198
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=32.73 E-value=1.4e+02 Score=22.60 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 027468 119 EHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 119 e~~~L~~e~~~L~~~~~ 135 (223)
.++....++..|+.++.
T Consensus 62 ~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 62 LRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555655555
No 199
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=32.36 E-value=96 Score=21.03 Aligned_cols=58 Identities=16% Similarity=0.059 Sum_probs=39.8
Q ss_pred CCCCCCCCCHHHHH-HHHHHHhhC-CCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 35 TGNNKRRFSDEQVK-SLEFMFESE-ARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 35 ~~r~R~rft~~Ql~-~LE~~F~~~-~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
.++.|-++|++.-. .++...... ....+..+.++...-||+..+|+.=.|.-|.+.++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 35677889986544 344444433 23446777777777789999999999988877664
No 200
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=32.32 E-value=1.6e+02 Score=22.11 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=35.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 87 RARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 87 Rar~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
|-..++..++..+..+...++.....+..|..++..|..++..|+..+.
T Consensus 73 ~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 73 QLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556667777777777777777888888888888888877765
No 201
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=31.54 E-value=33 Score=22.53 Aligned_cols=34 Identities=6% Similarity=0.144 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 93 KQIEREYTKLKAEFETLASSYELMRREHQLLLVQ 126 (223)
Q Consensus 93 kq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e 126 (223)
..-..+...+-..++.|..++..|+.++..|+.+
T Consensus 23 ~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 23 DEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556666666777777777777776666554
No 202
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.47 E-value=1.7e+02 Score=22.18 Aligned_cols=36 Identities=19% Similarity=0.301 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhh
Q 027468 38 NKRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNK 86 (223)
Q Consensus 38 ~R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNR 86 (223)
..+.|+..++..|... ...+.+|++...|+..+...
T Consensus 37 g~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~~~ 72 (142)
T 3gp4_A 37 GVRKFGAEDLRWILFT-------------RQMRRAGLSIEALIDYLALF 72 (142)
T ss_dssp SCBCBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHHHH
Confidence 4678999999888543 22467888888888777543
No 203
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=30.77 E-value=43 Score=26.31 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 41 RFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 41 rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
.+++.+..+|...|-.. ....++|..+|++...|+.....-|.+.|
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr 232 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLR 232 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 46777778887776332 12457899999999999988765444443
No 204
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.75 E-value=1e+02 Score=19.49 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 100 TKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 100 ~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
..|+..+-.|...-..|.+-...|+.|+.+|..++.
T Consensus 13 arlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 13 ARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 334333333333334444445556666666665554
No 205
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.98 E-value=68 Score=23.12 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhh
Q 027468 40 RRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNK 86 (223)
Q Consensus 40 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNR 86 (223)
..++.++...+...+.... + ..++|..+|++...|..|++.-
T Consensus 5 ~~~s~~~r~~i~~~~~~G~--s---~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV--S---LHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC--C---HHHHHHHHTCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcCC--C---HHHHHHHHCcCHHHHHHHHHcc
Confidence 4678887776666665432 2 4568999999999999999753
No 206
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=29.92 E-value=36 Score=25.76 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 113 YELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 113 ~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
.+.|.++.++|+.||..|+.+|.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888999999999999999965
No 207
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=29.87 E-value=1.8e+02 Score=21.89 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 101 KLKAEFETLASSYELMRREHQLLLVQLQKL 130 (223)
Q Consensus 101 ~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L 130 (223)
.-+..-+.+..+.+.|..+...|+.++++|
T Consensus 80 aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 80 AERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 333333444455555555555555555443
No 208
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=29.81 E-value=34 Score=23.10 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcchhhhhhh
Q 027468 39 KRRFSDEQVKSLEFMFES-----EARPESRMKHRMADELGLQPRQVAIWFQ 84 (223)
Q Consensus 39 R~rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~LgL~~rQVkiWFQ 84 (223)
...++.++...|...|.. +.+++..+...+...+|++...|...|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 345788899999999863 4578888888888889988777777664
No 209
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=28.80 E-value=75 Score=19.05 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 104 AEFETLASSYELMRREHQLLLVQLQK 129 (223)
Q Consensus 104 ~~~~~L~~~~~~l~~e~~~L~~e~~~ 129 (223)
+.-..|..+.+.+++.++.|+..++.
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444433
No 210
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=28.53 E-value=1.4e+02 Score=24.73 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 93 KQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLK 131 (223)
Q Consensus 93 kq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~ 131 (223)
++++.++-+.-.+|..|....+++..|+..|+.-+.+|+
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 344555555555566665555555555555555554443
No 211
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=28.44 E-value=28 Score=23.14 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 027468 65 KHRMADELGLQPRQVAIWFQNKR 87 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRR 87 (223)
..+||..+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 46799999999999999998876
No 212
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=28.36 E-value=11 Score=28.53 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=7.2
Q ss_pred CCCcchhhhhhh
Q 027468 73 GLQPRQVAIWFQ 84 (223)
Q Consensus 73 gL~~rQVkiWFQ 84 (223)
||++.+|.-.=+
T Consensus 27 ~Ls~~e~~~lK~ 38 (107)
T 3a5t_A 27 GLSKEEIIQLKQ 38 (107)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 677766655433
No 213
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=28.31 E-value=24 Score=21.95 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 027468 65 KHRMADELGLQPRQVAIWFQNKR 87 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRR 87 (223)
..+||..+|+++..|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998765
No 214
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=28.22 E-value=1.2e+02 Score=21.39 Aligned_cols=20 Identities=15% Similarity=0.255 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027468 111 SSYELMRREHQLLLVQLQKL 130 (223)
Q Consensus 111 ~~~~~l~~e~~~L~~e~~~L 130 (223)
...+.|-.|+..|+.|+..+
T Consensus 37 ~rvdELt~E~e~l~~El~s~ 56 (77)
T 2w83_C 37 AKVDELTCEKDVLQGELEAV 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 33444444444444444433
No 215
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.20 E-value=76 Score=28.87 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 89 RSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKN 132 (223)
Q Consensus 89 r~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~ 132 (223)
+.+.+.+++..+.++.++..+..+......+...|..+++.|+.
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 16 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33444444444444444444444433333334444444444443
No 216
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.06 E-value=82 Score=23.86 Aligned_cols=45 Identities=7% Similarity=-0.029 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 42 FSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 42 ft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
+++.+..+|.-.|-.. . .-.++|..+|+++..|+.+...-|.+.|
T Consensus 141 L~~~~r~vl~l~~~~g--~---s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 141 LPEDLRMAITLRELDG--L---SYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp SCHHHHHHHHHHHTTC--C---CHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5666666776655322 1 2357899999999999988765444443
No 217
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.64 E-value=1.2e+02 Score=19.05 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 94 QIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLL 134 (223)
Q Consensus 94 q~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~ 134 (223)
+++.+..+|..+++.|+..+..-+.-..-|..|+..|+.++
T Consensus 7 qlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 7 QLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666665555444444455556666665554
No 218
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=27.32 E-value=26 Score=21.94 Aligned_cols=24 Identities=8% Similarity=0.351 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHh
Q 027468 65 KHRMADELGLQPRQVAIWFQNKRA 88 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRRa 88 (223)
..+||..+|+++..|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 457999999999999999987653
No 219
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=26.92 E-value=1.8e+02 Score=20.95 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 97 REYTKLKAEFETLASSYELMRREHQLLLVQLQKLK 131 (223)
Q Consensus 97 ~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~ 131 (223)
.+...++.+-..|..+...|.++...|..++..|.
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le 45 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQ 45 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433
No 220
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=26.90 E-value=2.4e+02 Score=24.84 Aligned_cols=44 Identities=14% Similarity=0.151 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 027468 95 IEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGKGH 138 (223)
Q Consensus 95 ~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~~ 138 (223)
++............|.....+++...+.|+.++..|...+..++
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~~~ 60 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPC 60 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33333333444555556666666777777777777777766544
No 221
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.67 E-value=44 Score=20.81 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=21.3
Q ss_pred HHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 66 HRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 66 ~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
.++|..+|+++..|+....+-+.+.+.
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 478999999999999888765555443
No 222
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=26.45 E-value=1.4e+02 Score=19.46 Aligned_cols=43 Identities=9% Similarity=0.046 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027468 93 KQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLG 135 (223)
Q Consensus 93 kq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~ 135 (223)
.++..+...|...-+.|..+...++.+.+..+.|-.+.++.|.
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455566666666666666666666666666666666666554
No 223
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.20 E-value=1.1e+02 Score=23.12 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 027468 122 LLLVQLQKLKNLL 134 (223)
Q Consensus 122 ~L~~e~~~L~~~~ 134 (223)
.|..++++++..+
T Consensus 88 ~lE~eL~~~r~em 100 (131)
T 3tnu_A 88 SVEEQLAQLRCEM 100 (131)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 224
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=26.07 E-value=61 Score=19.79 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhh
Q 027468 44 DEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQ 84 (223)
Q Consensus 44 ~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQ 84 (223)
+.+...+...+... . ...++|..+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 55555555555432 2 245789999999999998874
No 225
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=25.81 E-value=2.7e+02 Score=23.11 Aligned_cols=36 Identities=19% Similarity=0.059 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027468 102 LKAEFETLASSYELMRREHQLLLVQLQKLKNLLGKG 137 (223)
Q Consensus 102 lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~ 137 (223)
--.+|..|..+.+.++.|...|+.++..|+......
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335677788888888888888888888887766544
No 226
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=25.63 E-value=2.1e+02 Score=21.27 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027468 101 KLKAEFETLASSYELMRRE 119 (223)
Q Consensus 101 ~lk~~~~~L~~~~~~l~~e 119 (223)
.|+...+.+..++..|.-+
T Consensus 24 ~LR~qid~~~~e~a~l~le 42 (119)
T 3ol1_A 24 ELRRQVDQLTNDKARVEVE 42 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 227
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=25.51 E-value=2.1e+02 Score=21.26 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 92 TKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKN 132 (223)
Q Consensus 92 rkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~ 132 (223)
+...+.+...|+...|.+.-..-.|....+.|+.|+.-|+.
T Consensus 64 r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 64 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888777776666677778888887777654
No 228
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=25.48 E-value=1.6e+02 Score=19.84 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027468 111 SSYELMRREHQLLLVQLQKLK 131 (223)
Q Consensus 111 ~~~~~l~~e~~~L~~e~~~L~ 131 (223)
.+...|+...++|..|++.|+
T Consensus 56 ~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 56 QESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344445555555555555443
No 229
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.34 E-value=1.8e+02 Score=20.51 Aligned_cols=14 Identities=7% Similarity=0.311 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 027468 101 KLKAEFETLASSYE 114 (223)
Q Consensus 101 ~lk~~~~~L~~~~~ 114 (223)
.|+.+...|+-..+
T Consensus 31 ~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 31 DNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHH
Confidence 33333333333333
No 230
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.29 E-value=2.2e+02 Score=21.36 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027468 102 LKAEFETLASSYELMR 117 (223)
Q Consensus 102 lk~~~~~L~~~~~~l~ 117 (223)
|+.++..|+..+..|+
T Consensus 40 Lq~El~~lr~~~~~l~ 55 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLH 55 (111)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444433333333
No 231
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=25.18 E-value=30 Score=22.27 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHh
Q 027468 65 KHRMADELGLQPRQVAIWFQNKRA 88 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRRa 88 (223)
..+||..+|+++..|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457999999999999999987653
No 232
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.05 E-value=89 Score=28.23 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 92 TKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLL 134 (223)
Q Consensus 92 rkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~ 134 (223)
...++.+++.++.++..|...+.........|..+++.|+..+
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 19 IAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 3344444444444444444444444444445555555554443
No 233
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=24.95 E-value=1.1e+02 Score=24.68 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 39 KRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 39 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
...+|+.+..+|.-.+.-. + -.++|..||++++.|+....+-+.|...
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~---s---~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK---T---ASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC---C---HHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC---C---HHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 4568898888887654221 1 3568999999999999988766655443
No 234
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=24.85 E-value=55 Score=21.02 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=19.2
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 027468 65 KHRMADELGLQPRQVAIWFQNKR 87 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRR 87 (223)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45689999999999999988765
No 235
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.82 E-value=1.2e+02 Score=27.51 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027468 94 QIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGKGHE 139 (223)
Q Consensus 94 q~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~~~ 139 (223)
.....+..|..+++.|..+.+.++.+...++.++.++++++.+.+.
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445567788888999999999999999999999999998875543
No 236
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=24.65 E-value=30 Score=21.89 Aligned_cols=24 Identities=8% Similarity=0.225 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHh
Q 027468 65 KHRMADELGLQPRQVAIWFQNKRA 88 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRRa 88 (223)
..+||..+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 457999999999999999988765
No 237
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.64 E-value=2.6e+02 Score=22.11 Aligned_cols=36 Identities=11% Similarity=0.079 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 98 EYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNL 133 (223)
Q Consensus 98 e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~ 133 (223)
..+.++.++..|..++..+......|+.|+..|=+.
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666666777776655333
No 238
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=24.53 E-value=1.2e+02 Score=21.51 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 101 KLKAEFETLASSYELMRREHQLLLVQLQKLKNL 133 (223)
Q Consensus 101 ~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~ 133 (223)
.|+.+.+.+..++..+.-+.+.++..+..++.+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~K 36 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 36 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 239
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=24.24 E-value=49 Score=25.04 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=16.6
Q ss_pred HHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 67 RMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 67 ~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
++|..+|+++..|+.+...-|.+.|
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3566678888888887765444443
No 240
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=24.16 E-value=1.7e+02 Score=19.74 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 98 EYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 98 e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
+|-.+|.-...-.+....|.+-|..|..|+..++.++.+
T Consensus 14 eylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~ 52 (63)
T 2w6a_A 14 EYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHK 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence 344444444333444455555555555555555555443
No 241
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.15 E-value=1.3e+02 Score=18.39 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027468 101 KLKAEFETLASSYELMRREHQLL 123 (223)
Q Consensus 101 ~lk~~~~~L~~~~~~l~~e~~~L 123 (223)
..|.+...|.....+|++|++.|
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555666666555
No 242
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.01 E-value=1.4 Score=34.88 Aligned_cols=30 Identities=3% Similarity=-0.049 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCH
Q 027468 33 FGTGNNKRRFSDEQVKSLEFMFESEARPES 62 (223)
Q Consensus 33 ~~~~r~R~rft~~Ql~~LE~~F~~~~~p~~ 62 (223)
.+.+|.|+.|+..|+..|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 455677889999999999999999999874
No 243
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.84 E-value=2.7e+02 Score=22.02 Aligned_cols=14 Identities=7% Similarity=-0.166 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 027468 117 RREHQLLLVQLQKL 130 (223)
Q Consensus 117 ~~e~~~L~~e~~~L 130 (223)
..|...|+.++..+
T Consensus 102 ~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 102 NAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 244
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.82 E-value=89 Score=21.20 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCCCcchhhhhhh
Q 027468 41 RFSDEQVKSLEFMFES-----EARPESRMKHRMADELGLQPRQVAIWFQ 84 (223)
Q Consensus 41 rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~LgL~~rQVkiWFQ 84 (223)
.++.++...+...|.. +.+.+..+...+...+|++...+...|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3678889999999874 4567788877777888887776665553
No 245
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=23.61 E-value=40 Score=25.84 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=30.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhh
Q 027468 47 VKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRAR 89 (223)
Q Consensus 47 l~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar 89 (223)
+......|....|-. .....||+..|++...|...|.++-.-
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~L 75 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDL 75 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHH
Confidence 344455577766543 445678999999999999999987653
No 246
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.60 E-value=1.5e+02 Score=24.18 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhhh
Q 027468 40 RRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSKT 92 (223)
Q Consensus 40 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~Kr 92 (223)
..+++.+..+|.-.++ .+ + -.++|..||+++..|+....+-|.+-+.
T Consensus 196 ~~L~~~erevl~L~~~--G~-s---~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRK--GL-S---SKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHT--TC-C---HHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHc--CC-C---HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4689999999888652 22 2 4568999999999999988766665554
No 247
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=23.57 E-value=43 Score=22.96 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCcchhhhhhhhh
Q 027468 65 KHRMADELGLQPRQVAIWFQNK 86 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNR 86 (223)
...||+.||++..-|..|..++
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~ 34 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAG 34 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHhCC
Confidence 6689999999999999998653
No 248
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=23.50 E-value=4.5e+02 Score=24.42 Aligned_cols=76 Identities=14% Similarity=0.213 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhCCCcchhhhhhh---hhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 027468 62 SRMKHRMADELGLQPRQVAIWFQ---NKRARSKTKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLLGKG 137 (223)
Q Consensus 62 ~~~r~~LA~~LgL~~rQVkiWFQ---NRRar~Krkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~~ 137 (223)
...+..|...++++..|...=.. .|-++.....++.+++.|.++.+.|..-..+-..-.+-+..|+..++++...+
T Consensus 385 ~~a~~~L~~~f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~ 463 (470)
T 3ilw_A 385 DIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDD 463 (470)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34566788888998887654432 22344445566666666666666665555555555778888888888888753
No 249
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.45 E-value=1.7e+02 Score=20.64 Aligned_cols=40 Identities=13% Similarity=0.185 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 92 TKQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLK 131 (223)
Q Consensus 92 rkq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~ 131 (223)
|...+.+...|+...|.+.-..-.|....++|+.|+.-|+
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666665555556666666666665554
No 250
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=23.34 E-value=48 Score=26.91 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=34.0
Q ss_pred CCCCCCHHH-HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhh
Q 027468 38 NKRRFSDEQ-VKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARS 90 (223)
Q Consensus 38 ~R~rft~~Q-l~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~ 90 (223)
++...+.++ +..-...|....+-. .....||+++|++..-|...|.||-.-.
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~Ll 77 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTELL 77 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHHHH
Confidence 344566654 334455566665433 3455789999999999999999876544
No 251
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=23.32 E-value=1.9e+02 Score=20.08 Aligned_cols=47 Identities=9% Similarity=0.161 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHHhCC--Ccchhhhhhh
Q 027468 38 NKRRFSDEQVKSLEFMFES-----EARPESRMKHRMADELGL--QPRQVAIWFQ 84 (223)
Q Consensus 38 ~R~rft~~Ql~~LE~~F~~-----~~~p~~~~r~~LA~~LgL--~~rQVkiWFQ 84 (223)
....++.+++..|...|.. +.+.+..+...+...+|. +..+|...|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456899999999999974 468999999998888885 4566666664
No 252
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=23.27 E-value=38 Score=21.87 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 027468 65 KHRMADELGLQPRQVAIWFQNKR 87 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRR 87 (223)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 34688999999999999987765
No 253
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=23.00 E-value=35 Score=21.91 Aligned_cols=24 Identities=8% Similarity=0.351 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHh
Q 027468 65 KHRMADELGLQPRQVAIWFQNKRA 88 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRRa 88 (223)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457999999999999999987553
No 254
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.00 E-value=1.8e+02 Score=20.14 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhh
Q 027468 40 RRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQN 85 (223)
Q Consensus 40 ~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQN 85 (223)
+.++.++...+-..+... . + ..++|..+|++...|..|+..
T Consensus 16 ~~~s~~~r~~i~~~~~~g-~-s---~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAADG-I-R---PCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp SCCCHHHHHHHHHHHHTT-C-C---HHHHHHHHTCCHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHcC-C-C---HHHHHHHHCcCHHHHHHHHHH
Confidence 357777766665666532 2 2 346899999999999999864
No 255
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.86 E-value=2.9e+02 Score=22.05 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=7.5
Q ss_pred CCCHHHHHHHHHHH
Q 027468 41 RFSDEQVKSLEFMF 54 (223)
Q Consensus 41 rft~~Ql~~LE~~F 54 (223)
-+|++|...+...+
T Consensus 67 nLT~EQq~ql~~I~ 80 (175)
T 3lay_A 67 PLTTEQQATAQKIY 80 (175)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 46666665555544
No 256
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.66 E-value=2.5e+02 Score=23.57 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 110 ASSYELMRREHQLLLVQLQKLKNLL 134 (223)
Q Consensus 110 ~~~~~~l~~e~~~L~~e~~~L~~~~ 134 (223)
..+..++.......+.+++.|++..
T Consensus 191 ~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 191 RDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444443
No 257
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.51 E-value=2.1e+02 Score=20.18 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 93 KQIEREYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNLL 134 (223)
Q Consensus 93 kq~~~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~~ 134 (223)
...+.....-+++.+.|+.-.+.|+.-.+.|..=+.+|..+.
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~ 55 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEV 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345566677777888888777777777777777777665543
No 258
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=22.32 E-value=1.3e+02 Score=24.02 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 39 KRRFSDEQVKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 39 R~rft~~Ql~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
...+|+.+..+|.-.+. . . .-.++|..||+++..|+....+-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~--g-~---s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV--G-K---TMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTT--T-C---CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc--C-C---CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 45689999998876532 2 1 2356899999999999988776555544
No 259
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.16 E-value=46 Score=22.14 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=15.0
Q ss_pred HHHHHHhCCCcchhhhhhhh
Q 027468 66 HRMADELGLQPRQVAIWFQN 85 (223)
Q Consensus 66 ~~LA~~LgL~~rQVkiWFQN 85 (223)
.+||..+|++...|..|-.+
T Consensus 27 ~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 27 SELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHCcCHHHHHHHHcC
Confidence 45777788888878777766
No 260
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.06 E-value=2e+02 Score=20.37 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 97 REYTKLKAEFETLASSYELMRREHQLLL 124 (223)
Q Consensus 97 ~e~~~lk~~~~~L~~~~~~l~~e~~~L~ 124 (223)
.++..|-...+.+..+...|+++|..|+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~ 61 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLA 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544443
No 261
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=21.81 E-value=39 Score=21.84 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 027468 65 KHRMADELGLQPRQVAIWFQNKR 87 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRR 87 (223)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998764
No 262
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.62 E-value=56 Score=18.30 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 027468 119 EHQLLLVQLQKLKNLL 134 (223)
Q Consensus 119 e~~~L~~e~~~L~~~~ 134 (223)
||+.|...+.-|++++
T Consensus 8 endaleqkiaalkqki 23 (28)
T 3ra3_A 8 ENDALEQKIAALKQKI 23 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH
Confidence 3444444444444443
No 263
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=21.61 E-value=26 Score=26.85 Aligned_cols=23 Identities=17% Similarity=0.538 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 027468 65 KHRMADELGLQPRQVAIWFQNKR 87 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRR 87 (223)
+..+|..+|+++.+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 56789999999999999986544
No 264
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.53 E-value=1.4e+02 Score=22.20 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 103 KAEFETLASSYELMRREHQLLLVQLQK 129 (223)
Q Consensus 103 k~~~~~L~~~~~~l~~e~~~L~~e~~~ 129 (223)
...++....++..|+...+.|+.|+.+
T Consensus 88 ~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 88 KKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444443
No 265
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=21.53 E-value=39 Score=21.20 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCcchhhhhhhhhHh
Q 027468 65 KHRMADELGLQPRQVAIWFQNKRA 88 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRRa 88 (223)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 457999999999999999988665
No 266
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=21.40 E-value=77 Score=21.14 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 027468 65 KHRMADELGLQPRQVAIWFQNKR 87 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRR 87 (223)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 45789999999999999998765
No 267
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.11 E-value=2.4e+02 Score=25.20 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027468 97 REYTKLKAEFETLASSYELMRREHQLLLVQLQKLKNL 133 (223)
Q Consensus 97 ~e~~~lk~~~~~L~~~~~~l~~e~~~L~~e~~~L~~~ 133 (223)
++.+..+.+.+.++.++..++++.+.+..++...++.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 4455555555566666666655555555554443333
No 268
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.06 E-value=1.2e+02 Score=22.55 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 027468 107 ETLASSYELMRREHQLLLVQLQKLKNLLGK 136 (223)
Q Consensus 107 ~~L~~~~~~l~~e~~~L~~e~~~L~~~~~~ 136 (223)
+.+...++...++...|+.+++.|..++.+
T Consensus 85 ~~l~~~~~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 85 EEWKKKYEKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666543
No 269
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=20.76 E-value=18 Score=28.95 Aligned_cols=43 Identities=5% Similarity=0.067 Sum_probs=30.6
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhhhHhhhh
Q 027468 48 KSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQNKRARSK 91 (223)
Q Consensus 48 ~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQNRRar~K 91 (223)
......|....|-. .....||+..|++...|...|.++-.-..
T Consensus 53 ~aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~ 95 (245)
T 3aqt_A 53 TSARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDREQLLQ 95 (245)
T ss_dssp HHHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHHHHH
T ss_pred HHHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 34445566665533 33567899999999999999998765543
No 270
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=20.50 E-value=2.6e+02 Score=20.67 Aligned_cols=39 Identities=15% Similarity=0.109 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhCCCcchhhhhhhh
Q 027468 47 VKSLEFMFESEARPESRMKHRMADELGLQPRQVAIWFQN 85 (223)
Q Consensus 47 l~~LE~~F~~~~~p~~~~r~~LA~~LgL~~rQVkiWFQN 85 (223)
....+..|.....++......+|..+||....+.-.+..
T Consensus 85 ~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~ 123 (175)
T 3gyk_A 85 EAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEA 123 (175)
T ss_dssp HHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhC
Confidence 345566788777788888999999999998887776654
No 271
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=20.37 E-value=57 Score=21.60 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 027468 65 KHRMADELGLQPRQVAIWFQNKR 87 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRR 87 (223)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45689999999999999998754
No 272
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=20.27 E-value=43 Score=21.30 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcchhhhhhhhhH
Q 027468 65 KHRMADELGLQPRQVAIWFQNKR 87 (223)
Q Consensus 65 r~~LA~~LgL~~rQVkiWFQNRR 87 (223)
..+||..+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 45689999999999999998764
No 273
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=20.10 E-value=2.4e+02 Score=19.89 Aligned_cols=6 Identities=33% Similarity=0.468 Sum_probs=2.2
Q ss_pred HHHHHH
Q 027468 129 KLKNLL 134 (223)
Q Consensus 129 ~L~~~~ 134 (223)
.|++.|
T Consensus 66 elRqgL 71 (79)
T 3cvf_A 66 ELREGL 71 (79)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
Done!