BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027469
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z51|A Chain A, Crystal Structure Of Arabidopsis Cnfu Involved In Iron-
Sulfur Cluster Biosynthesis
Length = 154
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 84/149 (56%), Gaps = 7/149 (4%)
Query: 77 LTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVL 136
LT +NV+ VL+++RPYL++DGGN+ KLQGACGSCPSST TM MGIER L
Sbjct: 4 LTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRL 63
Query: 137 KEKFGDAIKDIRQVYDEEV-RETTVEAVNGHLDILRP-AIKNYGGSVEVLSVESGDCIVK 194
EK + + + + DEE E E + L+ +RP I GS++++ +E ++
Sbjct: 64 MEKIPEIVA-VEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIR 122
Query: 195 YVGPDSIASGIRAAI----KEKFPDIENV 219
GP + +R A+ +EK P I V
Sbjct: 123 ITGPAAGVMTVRVAVTQKLREKIPSIAAV 151
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 75 FDLTAKNVDLVLEDVRPYLI--ADG 97
+L +N++ VLE++RPYLI ADG
Sbjct: 83 LELNEENIEKVLEEIRPYLIGTADG 107
>pdb|2JNV|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 91
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 75 FDLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIER 134
LTA NV+ VL+ VRPYL ADGG++ KLQGACGSCPSS T+ GIER
Sbjct: 3 LPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKLQGACGSCPSSLITIKRGIER 62
Query: 135 VLKEKFGDAIKDIRQVYDEE 154
L EK D + + V D+E
Sbjct: 63 RLMEKIPD-VAAVEPVTDKE 81
>pdb|1XHJ|A Chain A, Solution Structure Of The Staphylococcus Epidermidis
Protein Se0630. Northest Structural Genomics Consortium
Target Ser8
Length = 88
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 75 FDLTAKNVDLVLEDVRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIER 134
FD A+ V+E +RP+L+ DGG+ +L GACG+CPSST T+ GIER
Sbjct: 9 FDQVAE----VIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIER 64
Query: 135 VLKEKFGDAIKDIRQVYDE 153
L E+ I ++ QV+ E
Sbjct: 65 ALHEEVPGVI-EVEQVFLE 82
>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain Of
Hirip5 Protein From Mouse Cdna
Length = 92
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 89 VRPYLIADGGNIXXXXXXXXXXXXKLQGACGSCPSSTTTMSMGIERVLK 137
+RP + DGG++ KLQG+C SCPSS T+ GI+ +L+
Sbjct: 26 IRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQ 74
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 149 QVYDEEVRETTVEAVNGH--------LDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDS 200
+V+D E ET + + GH D + + S+ V VE+G+CI G S
Sbjct: 262 KVWDPET-ETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320
Query: 201 IASGI 205
+ SG+
Sbjct: 321 LTSGM 325
>pdb|1TH5|A Chain A, Solution Structure Of C-Terminal Domain Of Nifu-Like
Protein From Oryza Sativa
Length = 74
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 154 EVRETTVEAVNGHLDILRPAIKNYGGS-VEVLSVESGDCIVKYVGPDSIASGIRAAI--- 209
E+ E VE V L+ +RP + GG ++ L ++ V+ GP ++ +R A+
Sbjct: 3 ELNEENVEKV---LNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKK 59
Query: 210 -KEKFPDIENV 219
+EK P I+ V
Sbjct: 60 LREKIPSIQIV 70
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 75 FDLTAKNVDLVLEDVRPYLIADGG 98
+L +NV+ VL ++RPYL GG
Sbjct: 2 LELNEENVEKVLNEIRPYLAGTGG 25
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,359,376
Number of Sequences: 62578
Number of extensions: 175300
Number of successful extensions: 573
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 562
Number of HSP's gapped (non-prelim): 15
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)