BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027469
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93W77|NIFU1_ARATH NifU-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=NIFU1
PE=1 SV=1
Length = 231
Score = 278 bits (712), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/210 (66%), Positives = 165/210 (78%), Gaps = 6/210 (2%)
Query: 19 SSKSQFPTKFNERLQFISIKPKNSVLQKSG-SHETAIRASNPSA-----PAGSSPGLYSA 72
S+++ FP ++ F+ K + ++ H +AI S+ +G S GLYSA
Sbjct: 21 STRNGFPVISDQNPSFVLFANKRRHISRTAIFHRSAISGSSQGEKISPLASGVSSGLYSA 80
Query: 73 HQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGI 132
FDLT +NVDLVLEDVRP+LI+DGGN+DVVSVEDGVVS+KLQGAC SCPSS+TTM+MGI
Sbjct: 81 QTFDLTPQNVDLVLEDVRPFLISDGGNVDVVSVEDGVVSLKLQGACTSCPSSSTTMTMGI 140
Query: 133 ERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCI 192
ERVLKEKFGDA+KDIRQV+DEEV++ TVEAVN HLDILRPAIKNYGGSVEVLSVE DC+
Sbjct: 141 ERVLKEKFGDALKDIRQVFDEEVKQITVEAVNAHLDILRPAIKNYGGSVEVLSVEGEDCV 200
Query: 193 VKYVGPDSIASGIRAAIKEKFPDIENVVFT 222
VKYVGP+SI GI+AAIKEKF DI NV FT
Sbjct: 201 VKYVGPESIGMGIQAAIKEKFKDISNVTFT 230
>sp|Q93W20|NIFU2_ARATH NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2
PE=1 SV=1
Length = 235
Score = 103 bits (258), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 91/152 (59%), Gaps = 7/152 (4%)
Query: 74 QFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIE 133
+ LT +NV+ VL+++RPYL++DGGN+ + ++ +V VKLQGACGSCPSST TM MGIE
Sbjct: 82 EVPLTEENVESVLDEIRPYLMSDGGNVALHEIDGNIVRVKLQGACGSCPSSTMTMKMGIE 141
Query: 134 RVLKEKFGDAIKDIRQVYDEEV-RETTVEAVNGHLDILRP-AIKNYGGSVEVLSVESGDC 191
R L EK + + + + DEE E E + L+ +RP I GS++++ +E
Sbjct: 142 RRLMEKIPEIVA-VEALPDEETGLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIV 200
Query: 192 IVKYVGPDSIASGIRAAI----KEKFPDIENV 219
++ GP + +R A+ +EK P I V
Sbjct: 201 KIRITGPAAGVMTVRVAVTQKLREKIPSIAAV 232
>sp|Q84LK7|NIFU1_ORYSJ NifU-like protein 1, chloroplastic OS=Oryza sativa subsp. japonica
GN=NIFU1 PE=1 SV=1
Length = 226
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 94/171 (54%), Gaps = 9/171 (5%)
Query: 57 SNPSAPAGSSPGL--YSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKL 114
P G+ GL +A Q LTA NV+ VL+ VRPYL ADGG++ + + VV +KL
Sbjct: 53 QRPPLVVGAIAGLDPVTAVQLPLTAGNVESVLDQVRPYLTADGGDVALHEIAGNVVRLKL 112
Query: 115 QGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEV-RETTVEAVNGHLDILRPA 173
QGACGSCPSS T+ GIER L EK D + + V D+E E E V L+ +RP
Sbjct: 113 QGACGSCPSSLITIKRGIERRLMEKIPD-VAAVEPVTDKETGLELNEENVEKVLNEIRPY 171
Query: 174 IKNY-GGSVEVLSVESGDCIVKYVGPDSIASGIRAAI----KEKFPDIENV 219
+ GG ++ L ++ V+ GP ++ +R A+ +EK P I+ V
Sbjct: 172 LAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIV 222
>sp|Q84RQ7|NIFU3_ARATH NifU-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=NIFU3
PE=2 SV=1
Length = 236
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 84/142 (59%), Gaps = 4/142 (2%)
Query: 77 LTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVL 136
LT +NV+ VL++VRP L+ADGGN+ + ++ VV +KLQGACGSCPSS+ T+ MGIE L
Sbjct: 84 LTEENVERVLDEVRPSLMADGGNVALHEIDGLVVVLKLQGACGSCPSSSMTLKMGIESRL 143
Query: 137 KEKFGDAIKDIRQVYDEEV--RETTVEAVNGHLDILRPAIKNY-GGSVEVLSVESGDCIV 193
++K + I + Q + E E E + L LRP + GG +E++ ++ V
Sbjct: 144 RDKIPE-IMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKV 202
Query: 194 KYVGPDSIASGIRAAIKEKFPD 215
+ GP + +R A+ +K +
Sbjct: 203 RLTGPAAGVMTVRVALTQKLRE 224
Score = 35.4 bits (80), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 67 PGLYSAHQF--------DLTAKNVDLVLEDVRPYLIA-DGGNIDVVSVEDGVVSVKLQG 116
P + S QF +L +N++ VL ++RPYL GG +++V ++ VV V+L G
Sbjct: 148 PEIMSVEQFLESETGGLELNDENIEKVLSELRPYLSGTGGGGLELVEIDGYVVKVRLTG 206
>sp|P33179|NIFU_ANASL Nitrogen fixation protein NifU (Fragment) OS=Anabaena sp. (strain
L31) GN=nifU PE=3 SV=1
Length = 112
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 61/104 (58%), Gaps = 6/104 (5%)
Query: 37 IKPKNSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIAD 96
+K KN+V + + + + A +G L + + L K +D E+VRP LIAD
Sbjct: 6 VKEKNAV---TNLNTKGVNLTKEIANSGQKRALTNVQKIALIQKVLD---EEVRPVLIAD 59
Query: 97 GGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKF 140
GG++++ V+ +V V LQGACGSCPSST T+ + IE L+++
Sbjct: 60 GGDVELYDVDGDIVKVVLQGACGSCPSSTATLKIAIESRLRDRI 103
>sp|O32119|YUTI_BACSU Putative nitrogen fixation protein YutI OS=Bacillus subtilis
(strain 168) GN=yutI PE=3 SV=1
Length = 111
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 44/57 (77%)
Query: 80 KNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVL 136
+ V VL+ +RP+L+ DGG+ ++V V++G+V ++L GACGSCPSST T+ GIER L
Sbjct: 41 EQVQEVLDKLRPFLLRDGGDCELVDVDEGIVKLRLLGACGSCPSSTITLKAGIERAL 97
>sp|Q43885|NIFU_TRIAZ Nitrogen fixation protein NifU OS=Trichormus azollae GN=nifU PE=3
SV=1
Length = 300
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 38 KPKNSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADG 97
K ++ K GS T I S P L + + L K +D E+VRP LIADG
Sbjct: 198 KAATNLNNKGGSKPTNIPNSGQKRP------LTNVQKIALIQKVLD---EEVRPVLIADG 248
Query: 98 GNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKF 140
G++++ V+ +V V LQGACGSC SST T+ + IE L+++
Sbjct: 249 GDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291
>sp|P20628|NIFU_NOSS1 Nitrogen fixation protein NifU OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=nifU PE=3 SV=1
Length = 300
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 38 KPKNSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADG 97
K ++ K GS T I S P L + + L K +D E+VRP LIADG
Sbjct: 198 KAATNLNNKGGSKPTNIPNSGQKRP------LTNVQKIALIQKVLD---EEVRPVLIADG 248
Query: 98 GNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKF 140
G++++ V+ +V V LQGACGSC SST T+ + IE L+++
Sbjct: 249 GDVELYDVDGDIVKVVLQGACGSCSSSTATLKIAIESRLRDRI 291
>sp|Q9UMS0|NFU1_HUMAN NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Homo
sapiens GN=NFU1 PE=1 SV=2
Length = 254
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 26 TKFNERLQFISIKPK--NSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVD 83
TK NE L + +KP +++ S + PS AGS ++ A +
Sbjct: 122 TKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPSGEAGSE------EDDEVVAMIKE 175
Query: 84 LVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDA 143
L+ +RP + DGG++ EDG+V +KLQG+C SCPSS T+ GI+ +L + +
Sbjct: 176 LLDTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNML-QFYIPE 234
Query: 144 IKDIRQVYDEEVRE 157
++ + QV D+E E
Sbjct: 235 VEGVEQVMDDESDE 248
>sp|B4JWR9|NFU1_DROGR NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
OS=Drosophila grimshawi GN=GH17809 PE=3 SV=1
Length = 298
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 89 VRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIR 148
+RP + DGG+I +S E GVV +K+QG+C SCPSS T+ G++ +L + + ++ +
Sbjct: 202 IRPTVQEDGGDIVFISYEKGVVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIPEVESVE 260
Query: 149 QVYDE 153
QV+DE
Sbjct: 261 QVFDE 265
>sp|Q8SY96|NFU1_DROME NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
OS=Drosophila melanogaster GN=CG32500 PE=2 SV=1
Length = 283
Score = 60.8 bits (146), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 83 DLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
+L+ +RP + DGG+I + E GVV +K+QG+C SCPSS T+ G++ +L + +
Sbjct: 184 ELLDTRIRPTVQEDGGDIVFMGYEGGVVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIP 242
Query: 143 AIKDIRQVYDEEVR--ETTVEAVNGHLDILRPAIKNYGG 179
++ + QV+DE R E+ E +L L+ + GG
Sbjct: 243 EVESVEQVFDEADRMIESEFERFEKNLKTLKQQEPSGGG 281
>sp|B4H303|NFU1_DROPE NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
OS=Drosophila persimilis GN=GL13432 PE=3 SV=1
Length = 282
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 83 DLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
+L+ +RP + DGG+I +S E+GVV +K+QG+C SCPSS T+ G++ +L + +
Sbjct: 180 ELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIP 238
Query: 143 AIKDIRQVYDEEVR 156
++ + QV+D+ R
Sbjct: 239 EVESVEQVFDDADR 252
>sp|B4NE93|NFU1_DROWI NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
OS=Drosophila willistoni GN=GK25604 PE=3 SV=1
Length = 289
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 83 DLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
+L+ +RP + DGG+I +S ++GVV +K+QG+C SCPSS T+ G++ +L + +
Sbjct: 185 ELLDTRIRPTVQEDGGDIVFMSYDNGVVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIP 243
Query: 143 AIKDIRQVYDE 153
++ + QV+DE
Sbjct: 244 EVESVEQVFDE 254
>sp|B5DKJ8|NFU1_DROPS NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
OS=Drosophila pseudoobscura pseudoobscura GN=GA22888
PE=3 SV=1
Length = 286
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 83 DLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
+L+ +RP + DGG+I +S E+GVV +K+QG+C SCPSS T+ G++ +L + +
Sbjct: 184 ELLDTRIRPTVQEDGGDIVFISYENGVVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIP 242
Query: 143 AIKDIRQVYDE 153
++ + QV+D+
Sbjct: 243 EVESVEQVFDD 253
>sp|B4PZ52|NFU1_DROYA NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
OS=Drosophila yakuba GN=GE15286 PE=3 SV=1
Length = 283
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 54/93 (58%), Gaps = 3/93 (3%)
Query: 89 VRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIR 148
+RP + DGG+I + E GVV +K+QG+C SCPSS T+ G++ +L + + ++ +
Sbjct: 190 IRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIPEVESVE 248
Query: 149 QVYDEEVR--ETTVEAVNGHLDILRPAIKNYGG 179
QV+DE R ++ E +L L+ + GG
Sbjct: 249 QVFDEADRMVDSEFERFEKNLKTLKQQEPSGGG 281
>sp|Q9QZ23|NFU1_MOUSE NFU1 iron-sulfur cluster scaffold homolog, mitochondrial OS=Mus
musculus GN=Nfu1 PE=1 SV=2
Length = 255
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 7/131 (5%)
Query: 26 TKFNERLQFISIKPK--NSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVD 83
TK NE L + +KP +++ S + P P + S ++ A +
Sbjct: 120 TKENEELDWNLLKPDIYATIMDFFASGLPLVTEETPPPPGEAG----SEEDDEVVAMIKE 175
Query: 84 LVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDA 143
L+ +RP + DGG++ EDG+V +KLQG+C SCPSS T+ GI+ +L + +
Sbjct: 176 LLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNML-QFYIPE 234
Query: 144 IKDIRQVYDEE 154
++ + QV D++
Sbjct: 235 VEGVEQVMDDD 245
>sp|B4IMF6|NFU1_DROSE NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
OS=Drosophila sechellia GN=GM13534 PE=3 SV=1
Length = 283
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 83 DLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
+L+ +RP + DGG+I + E GVV +K+QG+C SCPSS T+ G++ +L + +
Sbjct: 184 ELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIP 242
Query: 143 AIKDIRQVYDEEVR--ETTVEAVNGHLDILRPAIKNYGG 179
++ + QV+DE R ++ E +L L+ + GG
Sbjct: 243 EVESVEQVFDEADRMIDSEFERFEKNLKTLKQQEPSGGG 281
>sp|B4R3T1|NFU1_DROSI NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
OS=Drosophila simulans GN=GD15490 PE=3 SV=1
Length = 283
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 83 DLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
+L+ +RP + DGG+I + E GVV +K+QG+C SCPSS T+ G++ +L + +
Sbjct: 184 ELLDTRIRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIP 242
Query: 143 AIKDIRQVYDEEVR--ETTVEAVNGHLDILRPAIKNYGG 179
++ + QV+DE R ++ E +L L+ + GG
Sbjct: 243 EVESVEQVFDEADRMIDSEFERFEKNLKTLKQQGPSGGG 281
>sp|Q00241|NIFU_PLEBO Nitrogen fixation protein NifU (Fragment) OS=Plectonema boryanum
GN=nifU PE=3 SV=1
Length = 205
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 52 TAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVS 111
TA R + + A L + + L K +D E+VRP LIADGG++++ V+ V
Sbjct: 111 TAARIAAEISEAQIRKPLTNVQKIALIQKVLD---EEVRPVLIADGGDVELYDVDGDFVK 167
Query: 112 VKLQGACGSCPSSTTTMSMGIERVLK 137
V L+GACGSC SST T+ +E L+
Sbjct: 168 VTLKGACGSCASSTATLKDAVEAKLR 193
>sp|B3NYF7|NFU1_DROER NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
OS=Drosophila erecta GN=GG17526 PE=3 SV=1
Length = 283
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 89 VRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIR 148
+RP + DGG+I + E GVV +K+QG+C SCPSS T+ G++ +L + + ++ +
Sbjct: 190 IRPTVQEDGGDIVFMGYEAGVVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIPEVESVE 248
Query: 149 QVYDEEVR 156
QV+DE R
Sbjct: 249 QVFDEADR 256
>sp|B4M375|NFU1_DROVI NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
OS=Drosophila virilis GN=GJ19011 PE=3 SV=1
Length = 298
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 83 DLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
+L+ +RP + DGG+I + E+G+V +K+QG+C SCPSS T+ G++ +L + +
Sbjct: 192 ELLDTRIRPTVQEDGGDIVFMGYENGIVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIP 250
Query: 143 AIKDIRQVYDE 153
++ + QV+D+
Sbjct: 251 EVESVEQVFDD 261
>sp|P32860|NFU1_YEAST NifU-like protein, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NFU1 PE=1 SV=2
Length = 256
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 83 DLVLEDVRPYLIADGGNIDVVSVE--DGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKF 140
+L+ +RP ++ DGG+ID + G V ++LQGAC SC SS T+ GIE +LK +
Sbjct: 159 ELIDTRIRPAILEDGGDIDYRGWDPKTGTVYLRLQGACTSCSSSEVTLKYGIESMLKH-Y 217
Query: 141 GDAIKDIRQVYDEE 154
D +K++ Q+ D E
Sbjct: 218 VDEVKEVIQIMDPE 231
>sp|B3MRT7|NFU1_DROAN NFU1 iron-sulfur cluster scaffold homolog, mitochondrial
OS=Drosophila ananassae GN=GF20932 PE=3 SV=1
Length = 286
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 83 DLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
+L+ +RP + DGG+I + E+G+V +K+QG+C SCPSS T+ G++ +L + +
Sbjct: 184 ELLDTRIRPTVQEDGGDIVFMGYENGIVKLKMQGSCSSCPSSIVTLKNGVQNML-QFYIP 242
Query: 143 AIKDIRQVYD 152
++ + QV+D
Sbjct: 243 EVESVEQVFD 252
>sp|Q9LIG6|NIFU4_ARATH NifU-like protein 4, mitochondrial OS=Arabidopsis thaliana GN=NIFU4
PE=2 SV=1
Length = 283
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 3/80 (3%)
Query: 83 DLVLEDVRPYLIADGGNIDVVSV--EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKF 140
+L+ +RP + DGG+I+ E G+V +++QGAC CPSS+ T+ GIE +L +
Sbjct: 198 ELLETRIRPAVQDDGGDIEYCGFDPESGIVKLRMQGACSGCPSSSVTLKSGIENMLMH-Y 256
Query: 141 GDAIKDIRQVYDEEVRETTV 160
+K + Q +D E E T+
Sbjct: 257 VSEVKGVEQEFDGEDEEGTL 276
>sp|Q9C8J2|NIFU5_ARATH NifU-like protein 5, mitochondrial OS=Arabidopsis thaliana GN=NIFU5
PE=2 SV=1
Length = 275
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 83 DLVLEDVRPYLIADGGNIDV--VSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKF 140
+L+ +RP + DGG+I+ E G+V +++QGAC CPSS+ T+ GIE +L
Sbjct: 193 ELLETRIRPSVQDDGGDIEYCGFDTETGIVKLRMQGACSGCPSSSVTLKSGIENMLMHYV 252
Query: 141 GDAIKDIRQVYDEE 154
+ +K + Q +D E
Sbjct: 253 SE-VKGVEQEFDGE 265
>sp|Q9UUB8|YH9J_SCHPO NifU-like protein C1709.19c OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC1709.19c PE=3 SV=1
Length = 260
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 33 QFISIKPK-NSVLQKSGSHETAIRASNPSAPAGSSPGLYSAHQFDLTAKNVDLVLEDVRP 91
++ +KP+ SV+ + S+ + + + P A + L S Q + A +L+ +RP
Sbjct: 114 EWAQMKPEVFSVIMEHLSNGSPVLSEEPLKGASDTQILESDSQ--IVAMIKELIETSIRP 171
Query: 92 YLIADGGNIDVVSVED--GVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQ 149
+ DGG+++ ++ G VS+KL+GAC +C SS T+ GI+++LK + ++++ Q
Sbjct: 172 SIQEDGGDVEFRGFDEKTGTVSLKLRGACRTCSSSAVTLKNGIQQMLKHYIPE-VENVVQ 230
Query: 150 VYDEE 154
V D E
Sbjct: 231 VLDPE 235
>sp|Q01180|NIFU_RHOSH Nitrogen fixation protein NifU OS=Rhodobacter sphaeroides GN=nifU
PE=3 SV=1
Length = 246
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 79 AKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKE 138
A+ + V+E VRP L ADGG++ +V+VE V V L GAC C + T+ G+++ L +
Sbjct: 165 ARLIAEVIESVRPRLRADGGDVTLVAVEGSKVRVHLTGACSGCQLAALTLG-GLQKRLAD 223
Query: 139 KFGDAIKDI 147
G I+ I
Sbjct: 224 TLGRPIRVI 232
>sp|Q43909|NIFU_AZOBR Nitrogen fixation protein NifU OS=Azospirillum brasilense GN=nifU
PE=3 SV=2
Length = 310
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 80 KNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEK 139
+ + +ED RP + DGG++++V ++ + V+L GAC C S TM MG++ L E
Sbjct: 235 QKIMFAIEDWRPQIQRDGGDVELVDIDGKDIYVRLTGACSGCSQSAGTM-MGVQAKLVEA 293
Query: 140 FGDAIK 145
G+ ++
Sbjct: 294 LGEFVR 299
>sp|P23121|NIFU_AZOCH Nitrogen fixation protein NifU OS=Azotobacter chroococcum mcd 1
GN=nifU PE=3 SV=1
Length = 309
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 80 KNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEK 139
+ ++ VL +RP L D G+++++ V+ + VKL GAC C ++ T+ GI++ L E+
Sbjct: 232 RRIETVLAAIRPTLQRDKGDVELIDVDGKNIYVKLTGACTGCQMASMTLG-GIQQRLIEE 290
Query: 140 FGDAIKDI 147
G+ +K I
Sbjct: 291 LGEFVKVI 298
>sp|P05340|NIFU_AZOVI Nitrogen fixation protein NifU OS=Azotobacter vinelandii GN=nifU
PE=3 SV=2
Length = 312
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 80 KNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEK 139
+ ++ VL +RP L D G+++++ V+ V VKL GAC C ++ T+ GI++ L E+
Sbjct: 234 RRIETVLAAIRPTLQRDKGDVELIDVDGKNVYVKLTGACTGCQMASMTLG-GIQQRLIEE 292
Query: 140 FGDAIKDI 147
G+ +K I
Sbjct: 293 LGEFVKVI 300
>sp|Q5QZC8|NFUA_IDILO Fe/S biogenesis protein NfuA OS=Idiomarina loihiensis (strain ATCC
BAA-735 / DSM 15497 / L2-TR) GN=nfuA PE=3 SV=1
Length = 192
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 80 KNVDLVLE-DVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLK 137
+ V+ V++ ++ P L + GG + + + +DGV ++ G C C T+ GIE+ L
Sbjct: 109 ERVEYVIQAEINPQLASHGGQVMISEITDDGVAILQFGGGCNGCSMIDVTLKNGIEKELL 168
Query: 138 EKFGDAIKDIRQVYDEEVRETT 159
E+F + +K +R + D E E +
Sbjct: 169 ERFPEEVKGVRDITDHEPGEHS 190
>sp|Q89A55|NFUA_BUCBP Fe/S biogenesis protein NfuA OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=nfuA PE=3 SV=1
Length = 191
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 76 DLTAKNVDLVLEDVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIER 134
DL + + + ++ P L A GG +D++++ E G +S+K G C C T+ GIE+
Sbjct: 106 DLKRRVENFLNLNINPQLSAHGGKVDLMNITESGYLSLKFSGGCNGCSMVQKTLKEGIEK 165
Query: 135 VLKEKFGD--AIKDIRQ 149
+ KF + + DI Q
Sbjct: 166 QILAKFSEFKGVYDITQ 182
>sp|Q12IC3|NFUA_SHEDO Fe/S biogenesis protein NfuA OS=Shewanella denitrificans (strain
OS217 / ATCC BAA-1090 / DSM 15013) GN=nfuA PE=3 SV=1
Length = 192
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 84 LVLEDVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
++ ++ P L + GGNI +V V +DGV ++ G C C T+ GIE+ L + F
Sbjct: 114 VIQSEINPQLASHGGNIMLVEVTDDGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDLFTG 173
Query: 143 AIKDIRQVYDEE 154
+ +R V D +
Sbjct: 174 ELTGVRDVTDHQ 185
>sp|Q0HPU8|NFUA_SHESR Fe/S biogenesis protein NfuA OS=Shewanella sp. (strain MR-7)
GN=nfuA PE=3 SV=1
Length = 192
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 79 AKNVDLVLE-DVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVL 136
A+ V+ V++ ++ P L + GGNI +V + ++GV ++ G C C T+ GIE+ L
Sbjct: 108 AERVEYVIQSEINPQLASHGGNIMLVEITQEGVAVLQFGGGCNGCSQVDITLKDGIEKQL 167
Query: 137 KEKFGDAIKDIRQVYDEEVRE 157
+ F + +R V D + E
Sbjct: 168 LDMFPGELTGVRDVTDHQHGE 188
>sp|P40432|YVN2_AZOVI Uncharacterized 10.3 kDa protein in vnfA 5'region OS=Azotobacter
vinelandii PE=3 SV=1
Length = 96
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 86 LEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVL 136
+E +RP + DGG++++V+V+D +V ++L+GAC C S T+ G+ R L
Sbjct: 32 VERLRPGVQRDGGDLELVAVQDNIVRLRLKGACVGCAMSAQTLG-GVRREL 81
>sp|A8FPL9|NFUA_SHESH Fe/S biogenesis protein NfuA OS=Shewanella sediminis (strain
HAW-EB3) GN=nfuA PE=3 SV=1
Length = 192
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 79 AKNVDLVLE-DVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVL 136
++ +D V++ ++ P L + GGNI +V V E+G ++ G C C T+ GIE L
Sbjct: 108 SERIDYVIQSEINPQLASHGGNIMLVEVTEEGTAILQFGGGCNGCSMVDVTLKDGIETQL 167
Query: 137 KEKFGDAIKDIRQVYDEE 154
EKF + ++ V + +
Sbjct: 168 LEKFPGELTGVKDVTEHQ 185
>sp|Q6LVQ9|NFUA_PHOPR Fe/S biogenesis protein NfuA OS=Photobacterium profundum GN=nfuA
PE=3 SV=1
Length = 194
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 80 KNVDLVLE-DVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLK 137
+ VD ++ V P L GGN+ + + EDGV ++ G C C T+ GIE+ L
Sbjct: 111 ERVDYAIQTQVNPQLAGHGGNVSLAEITEDGVAILQFGGGCNGCSMVDVTLKEGIEKELL 170
Query: 138 EKFGDAIKDIRQV 150
+F + +R V
Sbjct: 171 AQFAGELTGVRDV 183
>sp|Q089F8|NFUA_SHEFN Fe/S biogenesis protein NfuA OS=Shewanella frigidimarina (strain
NCIMB 400) GN=nfuA PE=3 SV=1
Length = 192
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 84 LVLEDVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
++ ++ P L + GGNI +V + E GV ++ G C C T+ GIE+ L + F
Sbjct: 114 IIQSEINPQLASHGGNIMLVEITEAGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPT 173
Query: 143 AIKDIRQVYDEEVRE 157
+ +R V + E E
Sbjct: 174 ELTGVRDVTEHEHGE 188
>sp|A1SBE8|NFUA_SHEAM Fe/S biogenesis protein NfuA OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=nfuA PE=3 SV=1
Length = 192
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 88 DVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKD 146
++ P L + GGNI +V V +DGV ++ G C C T+ GIE+ L + F + +
Sbjct: 118 EINPQLASHGGNILLVEVTDDGVAVIQFGGGCNGCSMVDVTLKDGIEKQLLDMFPGELTE 177
Query: 147 IR 148
+R
Sbjct: 178 VR 179
>sp|A8H9T3|NFUA_SHEPA Fe/S biogenesis protein NfuA OS=Shewanella pealeana (strain ATCC
700345 / ANG-SQ1) GN=nfuA PE=3 SV=1
Length = 192
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 84 LVLEDVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
++ ++ P L + GGNI +V + EDG+ ++ G C C T+ GIE+ L + F
Sbjct: 114 VIQSEINPQLASHGGNIMLVEITEDGIAVLQFGGGCNGCSMVDVTLKDGIEKQLLDMFPG 173
Query: 143 AIKDIRQVYDEEVRETTVE 161
+ ++ V + + E + +
Sbjct: 174 ELSGVKDVTEHQHGEHSYQ 192
>sp|A9KUY3|NFUA_SHEB9 Fe/S biogenesis protein NfuA OS=Shewanella baltica (strain OS195)
GN=nfuA PE=3 SV=1
Length = 192
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 84 LVLEDVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
++ ++ P L GGNI +V + ++GV ++ G C C T+ GIE+ L + F
Sbjct: 114 VIQSEINPQLAGHGGNIMLVEITKEGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPG 173
Query: 143 AIKDIRQVYDEEVRE 157
+ +R V D + E
Sbjct: 174 ELTGVRDVTDHQHGE 188
>sp|A6WU19|NFUA_SHEB8 Fe/S biogenesis protein NfuA OS=Shewanella baltica (strain OS185)
GN=nfuA PE=3 SV=1
Length = 192
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 84 LVLEDVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
++ ++ P L GGNI +V + ++GV ++ G C C T+ GIE+ L + F
Sbjct: 114 VIQSEINPQLAGHGGNIMLVEITKEGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPG 173
Query: 143 AIKDIRQVYDEEVRE 157
+ +R V D + E
Sbjct: 174 ELTGVRDVTDHQHGE 188
>sp|A3CYW3|NFUA_SHEB5 Fe/S biogenesis protein NfuA OS=Shewanella baltica (strain OS155 /
ATCC BAA-1091) GN=nfuA PE=3 SV=1
Length = 192
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 84 LVLEDVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
++ ++ P L GGNI +V + ++GV ++ G C C T+ GIE+ L + F
Sbjct: 114 VIQSEINPQLAGHGGNIMLVEITKEGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPG 173
Query: 143 AIKDIRQVYDEEVRE 157
+ +R V D + E
Sbjct: 174 ELTGVRDVTDHQHGE 188
>sp|B8ECN4|NFUA_SHEB2 Fe/S biogenesis protein NfuA OS=Shewanella baltica (strain OS223)
GN=nfuA PE=3 SV=1
Length = 192
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 84 LVLEDVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
++ ++ P L GGNI +V + ++GV ++ G C C T+ GIE+ L + F
Sbjct: 114 VIQSEINPQLAGHGGNIMLVEITKEGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPG 173
Query: 143 AIKDIRQVYDEEVRE 157
+ +R V D + E
Sbjct: 174 ELTGVRDVTDHQHGE 188
>sp|B0TNS0|NFUA_SHEHH Fe/S biogenesis protein NfuA OS=Shewanella halifaxensis (strain
HAW-EB4) GN=nfuA PE=3 SV=1
Length = 192
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 79 AKNVDLVLE-DVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVL 136
++ ++ V++ ++ P L + GGNI +V + E+G+ ++ G C C T+ GIE+ L
Sbjct: 108 SERIEYVIQSEINPQLASHGGNIMLVEITEEGIAVLQFGGGCNGCSMVDVTLKDGIEKQL 167
Query: 137 KEKFGDAIKDIRQVYDEEVRETTVE 161
E F + ++ V + + E + +
Sbjct: 168 LEMFPSELTGVKDVTEHQHGEHSYQ 192
>sp|Q0HDK0|NFUA_SHESM Fe/S biogenesis protein NfuA OS=Shewanella sp. (strain MR-4)
GN=nfuA PE=3 SV=1
Length = 192
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 79 AKNVDLVLE-DVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVL 136
A+ V+ V++ ++ P L + GGNI +V + ++GV ++ G C C T+ GIE+ L
Sbjct: 108 AERVEYVIQSEINPQLASHGGNIMLVEITQEGVAVLQFGGGCNGCSQVDITLKDGIEKQL 167
Query: 137 KEKFGDAIKDIRQVYDEE 154
+ F + + V D +
Sbjct: 168 LDMFPGELSGVSDVTDHQ 185
>sp|A0L2F1|NFUA_SHESA Fe/S biogenesis protein NfuA OS=Shewanella sp. (strain ANA-3)
GN=nfuA PE=3 SV=1
Length = 192
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 79 AKNVDLVLE-DVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVL 136
A+ V+ V++ ++ P L + GGNI +V + ++GV ++ G C C T+ GIE+ L
Sbjct: 108 AERVEYVIQSEINPQLASHGGNIMLVEITQEGVAVLQFGGGCNGCSQVDITLKDGIEKQL 167
Query: 137 KEKFGDAIKDIRQVYDEE 154
+ F + + V D +
Sbjct: 168 LDMFPGELSGVSDVTDHQ 185
>sp|A1RE77|NFUA_SHESW Fe/S biogenesis protein NfuA OS=Shewanella sp. (strain W3-18-1)
GN=nfuA PE=3 SV=1
Length = 192
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 84 LVLEDVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
++ ++ P L + GGNI +V + +GV ++ G C C T+ GIE+ L + F
Sbjct: 114 VIQSEINPQLASHGGNIMLVEITSEGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPG 173
Query: 143 AIKDIRQVYDEEVRE 157
+ +R V D + E
Sbjct: 174 ELTGVRDVTDHQHGE 188
>sp|A4YC18|NFUA_SHEPC Fe/S biogenesis protein NfuA OS=Shewanella putrefaciens (strain
CN-32 / ATCC BAA-453) GN=nfuA PE=3 SV=1
Length = 192
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 84 LVLEDVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
++ ++ P L + GGNI +V + +GV ++ G C C T+ GIE+ L + F
Sbjct: 114 VIQSEINPQLASHGGNIMLVEITSEGVAVLQFGGGCNGCSQVDITLKDGIEKQLLDMFPG 173
Query: 143 AIKDIRQVYDEEVRE 157
+ +R V D + E
Sbjct: 174 ELTGVRDVTDHQHGE 188
>sp|B8CUY8|NFUA_SHEPW Fe/S biogenesis protein NfuA OS=Shewanella piezotolerans (strain
WP3 / JCM 13877) GN=nfuA PE=3 SV=1
Length = 192
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 84 LVLEDVRPYLIADGGNIDVVSV-EDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGD 142
++ ++ P L + GGNI +V + EDG+ ++ G C C T+ GIE+ L + F
Sbjct: 114 VIQSEINPQLASHGGNIMLVEITEDGIAVLQFGGGCNGCSMVDVTLKDGIEKQLLDMFPG 173
Query: 143 AIKDIRQVYDEE 154
+ ++ V + +
Sbjct: 174 ELTGVKDVTEHQ 185
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,474,159
Number of Sequences: 539616
Number of extensions: 3194754
Number of successful extensions: 9316
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 9170
Number of HSP's gapped (non-prelim): 274
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)