Query 027469
Match_columns 223
No_of_seqs 289 out of 1769
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:26:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z51_A NIFU-like protein 2, ch 100.0 4.6E-44 1.6E-48 296.5 12.0 146 76-222 3-154 (154)
2 1xhj_A Nitrogen fixation prote 99.9 2.9E-25 9.8E-30 168.7 7.5 74 79-153 9-82 (88)
3 1veh_A NIFU-like protein hirip 99.9 3.2E-24 1.1E-28 164.1 6.5 74 79-153 15-89 (92)
4 1th5_A NIFU1; iron-sulfur clus 99.8 1.2E-21 4.2E-26 144.4 4.5 70 76-150 3-73 (74)
5 1xhj_A Nitrogen fixation prote 99.8 2.7E-20 9.2E-25 141.4 6.0 65 158-222 7-79 (88)
6 1th5_A NIFU1; iron-sulfur clus 99.8 2.3E-20 7.9E-25 137.6 4.2 66 158-223 4-74 (74)
7 1veh_A NIFU-like protein hirip 99.8 2.8E-19 9.5E-24 136.7 5.4 67 156-222 11-86 (92)
8 2z51_A NIFU-like protein 2, ch 99.7 2.9E-18 1E-22 141.8 7.7 70 75-149 83-153 (154)
9 3cq1_A Putative uncharacterize 96.5 0.0071 2.4E-07 45.5 6.7 67 78-147 7-77 (103)
10 3lno_A Putative uncharacterize 95.1 0.038 1.3E-06 41.9 5.6 74 73-148 4-82 (108)
11 3cq1_A Putative uncharacterize 94.7 0.073 2.5E-06 39.8 6.3 62 159-221 7-79 (103)
12 1uwd_A Hypothetical protein TM 94.7 0.061 2.1E-06 40.2 5.8 67 78-147 7-78 (103)
13 1uwd_A Hypothetical protein TM 90.5 0.32 1.1E-05 36.2 4.5 61 160-221 8-80 (103)
14 3lno_A Putative uncharacterize 90.3 0.54 1.8E-05 35.5 5.7 64 158-221 8-83 (108)
15 3prb_A FKBP-type peptidyl-prol 76.4 2.1 7.1E-05 36.9 3.8 102 94-223 110-218 (231)
16 3ux2_A MIP18 family protein FA 61.1 7.2 0.00024 31.0 3.6 38 107-145 49-86 (130)
17 2oka_A Hypothetical protein; P 59.5 23 0.00077 27.0 6.0 73 107-209 5-82 (104)
18 1xg8_A Hypothetical protein SA 59.0 4.9 0.00017 31.2 2.2 33 117-150 21-53 (111)
19 2apn_A Protein HI1723; HI1723 58.9 2 7E-05 32.3 0.0 57 46-107 30-88 (114)
20 1nwb_A Hypothetical protein AQ 53.5 1.5 5.1E-05 33.9 -1.5 54 46-106 31-88 (124)
21 2npb_A Selenoprotein W; struct 50.4 56 0.0019 24.2 6.9 73 110-211 5-82 (96)
22 1x0g_A ISCA; [2Fe-2S], biosynt 49.1 1.5 5.2E-05 33.0 -2.1 54 46-106 25-82 (112)
23 2fa8_A Hypothetical protein AT 48.1 39 0.0013 25.6 5.7 72 108-209 8-84 (105)
24 1v5r_A Growth-arrest-specific 43.7 23 0.00078 26.9 3.7 38 170-207 34-73 (97)
25 2ew9_A Copper-transporting ATP 43.4 42 0.0015 24.3 5.3 31 189-220 80-112 (149)
26 1r94_A Protein YFHF; tetrameri 42.5 1.7 6E-05 33.1 -2.7 75 46-126 23-106 (118)
27 2d2a_A SUFA protein; iron-sulf 37.9 2.1 7.2E-05 34.3 -3.0 71 46-124 61-142 (145)
28 2b7k_A SCO1 protein; metalloch 35.2 94 0.0032 24.3 6.4 29 187-215 153-184 (200)
29 2zzt_A Putative uncharacterize 34.4 1.3E+02 0.0043 21.8 6.6 21 200-220 59-79 (107)
30 3kij_A Probable glutathione pe 32.7 85 0.0029 23.8 5.7 29 183-211 139-171 (180)
31 3qfu_A 78 kDa glucose-regulate 29.8 1.6E+02 0.0056 25.1 7.6 51 161-217 321-371 (394)
32 1zzo_A RV1677; thioredoxin fol 28.7 59 0.002 22.5 3.8 28 182-211 104-132 (136)
33 3myf_A Sensor protein; HPT, hi 27.7 15 0.00053 27.7 0.5 57 113-176 58-115 (119)
34 3dxs_X Copper-transporting ATP 27.2 16 0.00056 23.6 0.5 65 110-185 4-71 (74)
35 3gr0_A Protein PRGH; type III 26.4 1.5E+02 0.005 24.8 6.4 114 88-221 7-126 (197)
36 3i33_A Heat shock-related 70 k 23.7 2.2E+02 0.0074 24.6 7.3 49 162-216 330-378 (404)
37 2cpd_A Apobec-1 stimulating pr 23.5 1.6E+02 0.0055 20.0 5.3 38 169-206 31-69 (99)
38 3gr1_A Protein PRGH; type III 23.1 1.7E+02 0.0058 25.0 6.2 113 89-221 8-126 (227)
39 3lo3_A Uncharacterized conserv 23.0 87 0.003 22.5 3.8 27 78-104 15-41 (94)
40 2lrn_A Thiol:disulfide interch 22.5 1.5E+02 0.005 21.4 5.2 31 182-212 112-143 (152)
41 3fry_A Probable copper-exporti 21.5 40 0.0014 21.9 1.6 22 110-138 7-29 (73)
42 2p0g_A Selenoprotein W-related 21.5 1E+02 0.0035 23.3 4.1 31 109-144 5-35 (105)
43 2rli_A SCO2 protein homolog, m 20.7 1.7E+02 0.006 21.3 5.3 31 183-213 133-167 (171)
No 1
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=100.00 E-value=4.6e-44 Score=296.48 Aligned_cols=146 Identities=40% Similarity=0.691 Sum_probs=135.5
Q ss_pred hhhHHHHHHHHHhhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccchh
Q 027469 76 DLTAKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEV 155 (223)
Q Consensus 76 ~l~~~~v~~~l~~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~ 155 (223)
++..++|+.+|++|||+|++|||||++++|++++|+|||+|||+|||+|++||+.+||++|++++| +++.|+.+.+++.
T Consensus 3 ~~~~e~v~~~L~~iRP~l~~dGGdvelv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vp-ev~~V~~v~~~~e 81 (154)
T 2z51_A 3 PLTEENVESVLDEIRPYLMSDGGNVALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIP-EIVAVEALPDEET 81 (154)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTEEEEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCT-TCCEEEECCSSCC
T ss_pred cchHHHHHHHHHHhChHHHhcCCeEEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCC-CceEEEEccCchh
Confidence 356788999999999999999999999999999999999999999999999999999999999998 5888888876542
Q ss_pred -hhhhHHHhhcccccchhHHHh-cCCcEEEEEEeCCEEEEEEeCh----hhHHHHHHHHHHhhCCCcceEEeC
Q 027469 156 -RETTVEAVNGHLDILRPAIKN-YGGSVEVLSVESGDCIVKYVGP----DSIASGIRAAIKEKFPDIENVVFT 222 (223)
Q Consensus 156 -~e~l~e~I~~~L~~IRP~L~~-~GGdvelv~v~~g~v~vrl~G~----~Tlk~gIE~~L~e~~Pei~~V~~v 222 (223)
.+.+.++|+++|++|||+|++ ||||+||++|++++|+|||+|+ +|+|++||++|++++|+|++|+++
T Consensus 82 ~l~L~~~~v~~~L~~iRP~L~~~dGGdvelv~v~~~~v~v~l~Gac~~~~Tlk~~Ie~~l~e~vP~i~~V~~~ 154 (154)
T 2z51_A 82 GLELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGVMTVRVAVTQKLREKIPSIAAVQLI 154 (154)
T ss_dssp SCCSSHHHHHHHHHHHGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEEECCEEEEEEecCCcccHhHHHHHHHHHHHHCCCccEEEeC
Confidence 345678999999999999997 9999999999999999999999 899999999999999999999874
No 2
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.92 E-value=2.9e-25 Score=168.75 Aligned_cols=74 Identities=47% Similarity=0.884 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccc
Q 027469 79 AKNVDLVLEDVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDE 153 (223)
Q Consensus 79 ~~~v~~~l~~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~ 153 (223)
.++|+.+|++|||+|++|||||+|++|++|+|+|||+|||+|||+|++||+++||++|++++| +++.|++++++
T Consensus 9 ~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vP-ev~~V~~v~~~ 82 (88)
T 1xhj_A 9 FDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVP-GVIEVEQVFLE 82 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHST-TCCEEEEEECC
T ss_pred HHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCC-CceEEEecccc
Confidence 577999998899999999999999999999999999999999999999999999999999998 68888887654
No 3
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.90 E-value=3.2e-24 Score=164.14 Aligned_cols=74 Identities=35% Similarity=0.636 Sum_probs=68.7
Q ss_pred HHHHHHHHH-hhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccc
Q 027469 79 AKNVDLVLE-DVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDE 153 (223)
Q Consensus 79 ~~~v~~~l~-~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~ 153 (223)
.+.|+.+|+ +|||+|++|||||+|++|++|+|+|||+|||+|||+|++||+++||++|++++| +++.|+.+.++
T Consensus 15 ~~~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vp-ev~~V~~v~~~ 89 (92)
T 1veh_A 15 VAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIP-EVEGVEQVSGP 89 (92)
T ss_dssp HHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCS-SCCCEEECSCS
T ss_pred HHHHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCC-CCCEEEEcCCC
Confidence 577999995 799999999999999999999999999999999999999999999999999998 58888888654
No 4
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.83 E-value=1.2e-21 Score=144.38 Aligned_cols=70 Identities=29% Similarity=0.619 Sum_probs=64.3
Q ss_pred hhhHHHHHHHHHhhhhHHHhcC-CceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCccccccccc
Q 027469 76 DLTAKNVDLVLEDVRPYLIADG-GNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQV 150 (223)
Q Consensus 76 ~l~~~~v~~~l~~IrP~Lq~dG-GdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V 150 (223)
++..++|+.+|++|||+|++|| ||+|+++|++++|+|||+|||+|| +||+++||++|++++| +++.|+.+
T Consensus 3 ~~~~~~V~~~L~~iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vp-ei~~V~~v 73 (74)
T 1th5_A 3 ELNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVV----RTVRIAVSKKLREKIP-SIQIVQLL 73 (74)
T ss_dssp CCSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSS----SSHHHHHHHHHHHHCT-TCSEEEEC
T ss_pred hHHHHHHHHHHHHHhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcch----HHHHHHHHHHHHHHCC-CCcEEEeC
Confidence 4567899999988999999999 999999999999999999999999 6999999999999998 57777654
No 5
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.80 E-value=2.7e-20 Score=141.35 Aligned_cols=65 Identities=26% Similarity=0.434 Sum_probs=62.2
Q ss_pred hhHHHhhcccccchhHHHhcCCcEEEEEEeCCEEEEEEeCh--------hhHHHHHHHHHHhhCCCcceEEeC
Q 027469 158 TTVEAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGP--------DSIASGIRAAIKEKFPDIENVVFT 222 (223)
Q Consensus 158 ~l~e~I~~~L~~IRP~L~~~GGdvelv~v~~g~v~vrl~G~--------~Tlk~gIE~~L~e~~Pei~~V~~v 222 (223)
.+.++|+++|++|||+|++|||||+|++|++|+|+|||+|+ +|||+|||++|++++|+|+.|+.+
T Consensus 7 ~~~~~I~~~L~~IRP~L~~dGGdvelv~v~~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v 79 (88)
T 1xhj_A 7 TMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQV 79 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCEEEEEECCSSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEE
T ss_pred HHHHHHHHHHHHhcHHHHhcCCeEEEEEEECCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEec
Confidence 57899999998899999999999999999999999999999 799999999999999999999875
No 6
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.80 E-value=2.3e-20 Score=137.58 Aligned_cols=66 Identities=24% Similarity=0.447 Sum_probs=62.9
Q ss_pred hhHHHhhcccccchhHHHhcC-CcEEEEEEeCCEEEEEEeCh----hhHHHHHHHHHHhhCCCcceEEeCC
Q 027469 158 TTVEAVNGHLDILRPAIKNYG-GSVEVLSVESGDCIVKYVGP----DSIASGIRAAIKEKFPDIENVVFTD 223 (223)
Q Consensus 158 ~l~e~I~~~L~~IRP~L~~~G-Gdvelv~v~~g~v~vrl~G~----~Tlk~gIE~~L~e~~Pei~~V~~v~ 223 (223)
.+.++|+++|++|||+|++|| ||++|++|++++|+|||+|+ +|||+|||++|++++|+|++|+.++
T Consensus 4 ~~~~~V~~~L~~iRP~L~~dGGGdvelv~v~~g~V~v~l~GaC~gc~Tlk~gIe~~L~~~vpei~~V~~v~ 74 (74)
T 1th5_A 4 LNEENVEKVLNEIRPYLAGTGGGGLQFLMIKGPIVKVRLTGPAAVVRTVRIAVSKKLREKIPSIQIVQLLS 74 (74)
T ss_dssp CSHHHHHHHHTTTHHHHTTTTCCCCCCCEEETTEEEECCCSSSSSSSSHHHHHHHHHHHHCTTCSEEEECC
T ss_pred HHHHHHHHHHHHHhHHHHhcCCCcEEEEEEeCCEEEEEEecCCcchHHHHHHHHHHHHHHCCCCcEEEeCC
Confidence 467899999988999999999 99999999999999999999 7999999999999999999999875
No 7
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.77 E-value=2.8e-19 Score=136.73 Aligned_cols=67 Identities=27% Similarity=0.431 Sum_probs=63.2
Q ss_pred hhhhHHHhhcccc-cchhHHHhcCCcEEEEEEeCCEEEEEEeCh--------hhHHHHHHHHHHhhCCCcceEEeC
Q 027469 156 RETTVEAVNGHLD-ILRPAIKNYGGSVEVLSVESGDCIVKYVGP--------DSIASGIRAAIKEKFPDIENVVFT 222 (223)
Q Consensus 156 ~e~l~e~I~~~L~-~IRP~L~~~GGdvelv~v~~g~v~vrl~G~--------~Tlk~gIE~~L~e~~Pei~~V~~v 222 (223)
++.+.++|+++|+ +|||+|++|||||+|++|++|+|+|||+|+ +|||++||++|++++|+++.|+.+
T Consensus 11 d~~~~~~I~~~L~~~IRP~L~~dGGdvelv~v~~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~V~~v 86 (92)
T 1veh_A 11 DDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFEDGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEGVEQV 86 (92)
T ss_dssp CCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEETTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCCEEEC
T ss_pred chHHHHHHHHHHHHHhhHHHHhcCCeEEEEEEeCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCEEEEc
Confidence 3478899999996 799999999999999999999999999999 799999999999999999999976
No 8
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.74 E-value=2.9e-18 Score=141.82 Aligned_cols=70 Identities=31% Similarity=0.692 Sum_probs=64.0
Q ss_pred hhhhHHHHHHHHHhhhhHHHh-cCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccc
Q 027469 75 FDLTAKNVDLVLEDVRPYLIA-DGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQ 149 (223)
Q Consensus 75 ~~l~~~~v~~~l~~IrP~Lq~-dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~ 149 (223)
+++..++|+.+|++|||||++ ||||+|++||++++|+|||+|+|++| +|++++||++|++++| +++.|..
T Consensus 83 l~L~~~~v~~~L~~iRP~L~~~dGGdvelv~v~~~~v~v~l~Gac~~~----~Tlk~~Ie~~l~e~vP-~i~~V~~ 153 (154)
T 2z51_A 83 LELNEENIEKVLEEIRPYLIGTADGSLDLVEIEDPIVKIRITGPAAGV----MTVRVAVTQKLREKIP-SIAAVQL 153 (154)
T ss_dssp CCSSHHHHHHHHHHHGGGCCGGGCCEEEEEEEETTEEEEEEESGGGGC----HHHHHHHHHHHHHHCT-TCCEEEE
T ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEEECCEEEEEEecCCccc----HhHHHHHHHHHHHHCC-CccEEEe
Confidence 456778999999999999997 99999999999999999999999998 7999999999999999 5776653
No 9
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=96.47 E-value=0.0071 Score=45.46 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=55.0
Q ss_pred hHHHHHHHH-HhhhhHHHhcC---CceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccc
Q 027469 78 TAKNVDLVL-EDVRPYLIADG---GNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDI 147 (223)
Q Consensus 78 ~~~~v~~~l-~~IrP~Lq~dG---GdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V 147 (223)
..+.|..+| .-..|.+..+- |-|.-++++++.|+|.+...+.+||. ..+|+..|+++|++ +| +++.+
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~~-l~-gv~~V 77 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPL-HDSLGEAVRQALSR-LP-GVEEV 77 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCS-SCHHHHHHHHHHHT-ST-TCCEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcH-HHHHHHHHHHHHHh-CC-CceeE
Confidence 346788888 56789998887 88888999999999999999999997 66788999999975 55 45544
No 10
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=95.07 E-value=0.038 Score=41.95 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=55.8
Q ss_pred chhhhhHHHHHHHH-HhhhhHHHhc---CCceEEEeeeC-CEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccc
Q 027469 73 HQFDLTAKNVDLVL-EDVRPYLIAD---GGNIDVVSVED-GVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDI 147 (223)
Q Consensus 73 ~~~~l~~~~v~~~l-~~IrP~Lq~d---GGdVelvdv~~-g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V 147 (223)
.+-+...+.|..+| .-.-|.+..+ -|-|.=+.+++ |.|+|.|.-...+||.. ..|+..|+++|+..+| +++.+
T Consensus 4 ~~~~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~-~~i~~~i~~al~~~l~-Gv~~V 81 (108)
T 3lno_A 4 MSQEAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMA-GQIVSDVKKVLSTNVP-EVNEI 81 (108)
T ss_dssp HHHHHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTH-HHHHHHHHHHHHHHCT-TCCCE
T ss_pred cchhhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHH-HHHHHHHHHHHHHhCC-CCceE
Confidence 34456667888888 4557877543 47788888875 89999999999999975 5788999999965576 46544
Q ss_pred c
Q 027469 148 R 148 (223)
Q Consensus 148 ~ 148 (223)
.
T Consensus 82 ~ 82 (108)
T 3lno_A 82 E 82 (108)
T ss_dssp E
T ss_pred E
Confidence 3
No 11
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=94.73 E-value=0.073 Score=39.82 Aligned_cols=62 Identities=23% Similarity=0.317 Sum_probs=50.3
Q ss_pred hHHHhhcccc-cchhHHHhcC---CcEEEEEEeCCEEEEEEeCh-------hhHHHHHHHHHHhhCCCcceEEe
Q 027469 159 TVEAVNGHLD-ILRPAIKNYG---GSVEVLSVESGDCIVKYVGP-------DSIASGIRAAIKEKFPDIENVVF 221 (223)
Q Consensus 159 l~e~I~~~L~-~IRP~L~~~G---Gdvelv~v~~g~v~vrl~G~-------~Tlk~gIE~~L~e~~Pei~~V~~ 221 (223)
+.+.|.++|. -+.|.+..+- |-|.=++++++.|.|.+.-+ .+++..|+++|+ .+|++..|.+
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~V~V 79 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALS-RLPGVEEVEV 79 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHH-TSTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCceeEEE
Confidence 4567778884 5778887776 88888889888999999877 689999999997 5899888764
No 12
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=94.66 E-value=0.061 Score=40.19 Aligned_cols=67 Identities=21% Similarity=0.266 Sum_probs=52.1
Q ss_pred hHHHHHHHHHhhh-hHHHhcC---CceEEEeeeC-CEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccc
Q 027469 78 TAKNVDLVLEDVR-PYLIADG---GNIDVVSVED-GVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDI 147 (223)
Q Consensus 78 ~~~~v~~~l~~Ir-P~Lq~dG---GdVelvdv~~-g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V 147 (223)
..+.|..+|..+. |.+..+- |-|.-+++++ |.|+|.+.-.+.+||. ...++..|+++|++ +| +++.+
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~-~~~l~~~i~~al~~-l~-gv~~v 78 (103)
T 1uwd_A 7 TKEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPL-AGMILSDAEEAIKK-IE-GVNNV 78 (103)
T ss_dssp CHHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSS-HHHHHHHHHHHHHT-SS-SCCEE
T ss_pred hHHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcH-HHHHHHHHHHHHHh-CC-CcceE
Confidence 4567888996555 9987765 6677788875 8999999999999996 67788899999975 55 45443
No 13
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=90.45 E-value=0.32 Score=36.21 Aligned_cols=61 Identities=23% Similarity=0.152 Sum_probs=43.1
Q ss_pred HHHhhcccccch-hHHHhcC---CcEEEEEEeC-CEEEEEEeCh-------hhHHHHHHHHHHhhCCCcceEEe
Q 027469 160 VEAVNGHLDILR-PAIKNYG---GSVEVLSVES-GDCIVKYVGP-------DSIASGIRAAIKEKFPDIENVVF 221 (223)
Q Consensus 160 ~e~I~~~L~~IR-P~L~~~G---Gdvelv~v~~-g~v~vrl~G~-------~Tlk~gIE~~L~e~~Pei~~V~~ 221 (223)
.+.|.++|..+. |.+..+- |-|.=+++++ |.|.|.+.-+ ..++..|+++|+ .+|++..|.+
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~-~l~gv~~v~V 80 (103)
T 1uwd_A 8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIK-KIEGVNNVEV 80 (103)
T ss_dssp HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHH-TSSSCCEEEE
T ss_pred HHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCcceEEE
Confidence 345666664333 6666554 6666677764 8888888766 688899999986 4898888764
No 14
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=90.30 E-value=0.54 Score=35.45 Aligned_cols=64 Identities=11% Similarity=0.304 Sum_probs=48.8
Q ss_pred hhHHHhhcccc-cchhHHHhc---CCcEEEEEEeC-CEEEEEEeCh-------hhHHHHHHHHHHhhCCCcceEEe
Q 027469 158 TTVEAVNGHLD-ILRPAIKNY---GGSVEVLSVES-GDCIVKYVGP-------DSIASGIRAAIKEKFPDIENVVF 221 (223)
Q Consensus 158 ~l~e~I~~~L~-~IRP~L~~~---GGdvelv~v~~-g~v~vrl~G~-------~Tlk~gIE~~L~e~~Pei~~V~~ 221 (223)
.+.++|.++|. -+-|.+..+ -|-|.=+.+++ |.|.|.|.-+ ..++..|+++|+..+|+++.|.+
T Consensus 8 ~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~p~cp~~~~i~~~i~~al~~~l~Gv~~V~V 83 (108)
T 3lno_A 8 AFENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTSIGCPMAGQIVSDVKKVLSTNVPEVNEIEV 83 (108)
T ss_dssp HHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSCTTCTTHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred hhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECCCCCcHHHHHHHHHHHHHHHhCCCCceEEE
Confidence 45667777774 457776544 57788888874 8899988766 68889999999777999988764
No 15
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=76.42 E-value=2.1 Score=36.85 Aligned_cols=102 Identities=22% Similarity=0.319 Sum_probs=66.1
Q ss_pred HhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccchhhhhhHHHhhcccccchhH
Q 027469 94 IADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPA 173 (223)
Q Consensus 94 q~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~~e~l~e~I~~~L~~IRP~ 173 (223)
+.+|....++++.++.|.|.+. =|.|..||.. .++ |..+-+ .+.++++.+++..-|.
T Consensus 110 ~~~~~~g~V~~v~~~~V~vD~N-----HPLAGk~L~F------------~ve-v~~v~e-----at~eei~~~~~~~~~~ 166 (231)
T 3prb_A 110 TIDGIPGKIVSINSGRVLVDFN-----HELAGKEVKY------------RIK-IEEVVD-----DKKNIVKEIVKMYVPR 166 (231)
T ss_dssp EETTEEEEEEEEETTEEEEECS-----CTTTTCCEEE------------EEE-EEEECC-----SHHHHHHHHHHHHCTT
T ss_pred EecCCCEEEEEEcCCEEEEeCC-----CccCCCEEEE------------EEE-EEEEec-----CCHHHHHHHHHHhcCC
Confidence 3345566889999999999984 3566666642 233 222211 2334455444322221
Q ss_pred HHhcCCcEEEEEEeCCEEEEEEeCh-------hhHHHHHHHHHHhhCCCcceEEeCC
Q 027469 174 IKNYGGSVEVLSVESGDCIVKYVGP-------DSIASGIRAAIKEKFPDIENVVFTD 223 (223)
Q Consensus 174 L~~~GGdvelv~v~~g~v~vrl~G~-------~Tlk~gIE~~L~e~~Pei~~V~~v~ 223 (223)
+ + ++ -++++++.+++.+--. ...|..|.+.|.++++++++|.+++
T Consensus 167 ~--~--~~-~~~~~~~~~~i~~p~~~~~~~~~~~~k~~~~~~i~~~~~~~~~v~~~e 218 (231)
T 3prb_A 167 L--S--DV-KVTIRNGTVKIELPEFAPFIPNIQTAKMAIANEILKRLEDAEKVSFVE 218 (231)
T ss_dssp C--C--CC-EEEEETTEEEEECCTTGGGSTTHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred c--c--ce-EEEEeCCeEEEEcCHHHhhhhHHHHHHHHHHHHHHHhccccceEEEEE
Confidence 1 1 12 3677889999998876 5678999999999999999998863
No 16
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=61.11 E-value=7.2 Score=30.96 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=31.2
Q ss_pred CCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccc
Q 027469 107 DGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIK 145 (223)
Q Consensus 107 ~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk 145 (223)
++.|.|.|+-.=.+||+++. +...|+.+|.+.+|...+
T Consensus 49 ~~~V~V~~TPT~p~Cp~a~~-I~l~Ir~kL~~~lp~~~k 86 (130)
T 3ux2_A 49 EYLVIIRFTPTVPHCSLATL-IGLCLRVKLQRCLPFKHK 86 (130)
T ss_dssp EEEEEECCCCCCCSSCHHHH-HHHHHHHHHHHHCSSCCC
T ss_pred CCeEEEEEEeCCCCCCchHH-HHHHHHHHHHHhCCCceE
Confidence 45799999999999999765 556899999998886554
No 17
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=59.48 E-value=23 Score=26.96 Aligned_cols=73 Identities=15% Similarity=0.325 Sum_probs=44.2
Q ss_pred CCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccchhhhhhHHHhhcccccchhHHHhcCCcEEEEEE
Q 027469 107 DGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSV 186 (223)
Q Consensus 107 ~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~~e~l~e~I~~~L~~IRP~L~~~GGdvelv~v 186 (223)
...|.|.| |.+|....... .+.+.|...||+.+..|. +.| ..||.-|+ .+
T Consensus 5 ~p~V~I~Y---C~~C~~~~Ra~--~laqeLl~tF~~~l~~v~---------------------l~P---~~~G~FEV-~v 54 (104)
T 2oka_A 5 KPEIVITY---CTQCQWLLRAA--WLAQELLSTFADDLGKVC---------------------LEP---GTGGVFRI-TC 54 (104)
T ss_dssp CCEEEEEE---ETTTTCHHHHH--HHHHHHHHHSTTTCSEEE---------------------EEE---ECTTCEEE-EE
T ss_pred CCEEEEEE---CCCCCChHHHH--HHHHHHHHHcCcccceEE---------------------EEe---CCCceEEE-EE
Confidence 45688888 89997755443 788899999986443221 122 24776664 44
Q ss_pred eCCEEEEEEeCh-----hhHHHHHHHHH
Q 027469 187 ESGDCIVKYVGP-----DSIASGIRAAI 209 (223)
Q Consensus 187 ~~g~v~vrl~G~-----~Tlk~gIE~~L 209 (223)
++..|+=|..++ ..||+.|...|
T Consensus 55 ng~lV~SKk~~ggFPe~~eLkq~Vrd~i 82 (104)
T 2oka_A 55 DGVQVWERKADGGFPEAKALKQRVRDRI 82 (104)
T ss_dssp TTEEEEEHHHHTSCCCHHHHHHHHHHHH
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHh
Confidence 554555555444 45666665554
No 18
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=59.01 E-value=4.9 Score=31.23 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=23.4
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHhCccccccccc
Q 027469 117 ACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQV 150 (223)
Q Consensus 117 aC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V 150 (223)
+|.+-|+|..|. .+++.+|+.++|+.--.+.-+
T Consensus 21 SCVnaPSSkeTy-EWLqAal~RKyp~~~f~~~YI 53 (111)
T 1xg8_A 21 SCVNAPTSKDIY-DWLQPLLKRKYPNISFKYTYI 53 (111)
T ss_dssp GGSSSCCHHHHH-HHHHHHHHHHCTTSCEEEEEE
T ss_pred hccCCCCchhHH-HHHHHHHhCcCCCCceEEEEE
Confidence 455557888888 599999999999633234444
No 19
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=58.89 E-value=2 Score=32.32 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=34.6
Q ss_pred eeeeEEEEecCCCCCCCCC-CCCCcCCcchhhhhHHHHHHHH-HhhhhHHHhcCCceEEEeeeC
Q 027469 46 KSGSHETAIRASNPSAPAG-SSPGLYSAHQFDLTAKNVDLVL-EDVRPYLIADGGNIDVVSVED 107 (223)
Q Consensus 46 ~~~~r~~~~~~gtp~a~~~-~~p~~~~~~~~~l~~~~v~~~l-~~IrP~Lq~dGGdVelvdv~~ 107 (223)
+.++|+++...|-.....+ +-.....+.|.....+.+..++ ....+||..- .+|+.+
T Consensus 30 ~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~-----~IDy~~ 88 (114)
T 2apn_A 30 DLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGG-----TVDYTE 88 (114)
T ss_dssp SCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTC-----EEEEEC
T ss_pred CceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCC-----EEEEEc
Confidence 5689999988775433332 1111122345555556777777 7889999854 577753
No 20
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=53.52 E-value=1.5 Score=33.86 Aligned_cols=54 Identities=7% Similarity=0.026 Sum_probs=34.2
Q ss_pred eeeeEEEEecCCCCCCCCC---CCCCcCCcchhhhhHHHHHHHH-HhhhhHHHhcCCceEEEeee
Q 027469 46 KSGSHETAIRASNPSAPAG---SSPGLYSAHQFDLTAKNVDLVL-EDVRPYLIADGGNIDVVSVE 106 (223)
Q Consensus 46 ~~~~r~~~~~~gtp~a~~~---~~p~~~~~~~~~l~~~~v~~~l-~~IrP~Lq~dGGdVelvdv~ 106 (223)
+.++|++|...|......+ +.+ ..+.|.....+.+..++ ....|||..- .||+.
T Consensus 31 ~~~LRv~V~~gGCsG~~y~l~~~~~--~~~~D~v~e~~Gv~v~VD~~s~~~L~G~-----~IDy~ 88 (124)
T 1nwb_A 31 NPILRIRVVPGGCSGFQYAMGFDDT--VEEGDHVFEYDGVKVVIDPFSMPYVNGA-----ELDYV 88 (124)
T ss_dssp SCEEEECCCCCCTTCCCCCCCEECS--CCSSCCCCCCSSSEEEECTTTGGGSTTC-----EEEEE
T ss_pred CceEEEEEEcCCCCCcEEEEEEccC--CCCCceEEEeCCEEEEEehHHHHHhCCC-----EEEEE
Confidence 6789999998875443333 111 12335555556777777 7889999854 66664
No 21
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=50.38 E-value=56 Score=24.20 Aligned_cols=73 Identities=25% Similarity=0.268 Sum_probs=44.5
Q ss_pred EEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccchhhhhhHHHhhcccccchhHHHhcCCcEEEEEEeCC
Q 027469 110 VSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVESG 189 (223)
Q Consensus 110 V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~~e~l~e~I~~~L~~IRP~L~~~GGdvelv~v~~g 189 (223)
|.|.| |.+|. +..--..+.+.|...||+.+. | .+. .-| ..||.-|+ .+++.
T Consensus 5 V~I~Y---C~~C~--y~~ra~~laqeLl~~Fp~~l~-V-~~~------------------l~p---~~~G~FEV-~vng~ 55 (96)
T 2npb_A 5 VRVVY---SGACG--YKPKYLQLKEKLEHEFPGCLD-I-CGE------------------GTP---QVTGFFEV-TVAGK 55 (96)
T ss_dssp EEEEC---CCCSC--HHHHHHHHHHHHHHHSBTTEE-E-EEC------------------CCS---SCCSCCEE-EETTE
T ss_pred EEEEE---cCCCC--CHHHHHHHHHHHHHhCCcceE-E-EEE------------------EcC---CCCcEEEE-EECCE
Confidence 56666 88886 444455889999999986343 1 110 001 45788776 45555
Q ss_pred EEEEEEeCh-----hhHHHHHHHHHHh
Q 027469 190 DCIVKYVGP-----DSIASGIRAAIKE 211 (223)
Q Consensus 190 ~v~vrl~G~-----~Tlk~gIE~~L~e 211 (223)
.|+=|+.++ ..+++.|...|..
T Consensus 56 lV~SKk~~ggFP~~~el~q~I~~~i~~ 82 (96)
T 2npb_A 56 LVHSKKRGDGYVDTESKFRKLVTAIKA 82 (96)
T ss_dssp EEEETTTTCCSSCSHHHHHHHHHHHHH
T ss_pred EEEEEecCCCCCChHHHHHHHHHHHhh
Confidence 666666555 4566666666544
No 22
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=49.14 E-value=1.5 Score=33.02 Aligned_cols=54 Identities=4% Similarity=-0.125 Sum_probs=32.3
Q ss_pred eeeeEEEEecCCCCCCCCC---CCCCcCCcchhhhhHHHHHHHH-HhhhhHHHhcCCceEEEeee
Q 027469 46 KSGSHETAIRASNPSAPAG---SSPGLYSAHQFDLTAKNVDLVL-EDVRPYLIADGGNIDVVSVE 106 (223)
Q Consensus 46 ~~~~r~~~~~~gtp~a~~~---~~p~~~~~~~~~l~~~~v~~~l-~~IrP~Lq~dGGdVelvdv~ 106 (223)
+.++|++|...|......+ ..+ ..+.|.....+.+..++ ....|||..- .+|+.
T Consensus 25 ~~~lRv~v~~gGCsG~~y~l~~~~~--~~~~D~v~e~~Gv~v~vd~~s~~~l~g~-----~IDy~ 82 (112)
T 1x0g_A 25 AAILRIQVQPSECGDWRYDLALVAE--PKPTDLLTQSQGWTIAIAAEAAELLRGL-----RVDYI 82 (112)
T ss_dssp --CEEEEEEEBSSSSEEEEEEECSS--CCTTCEEECSSSCCEEECGGGHHHHTTC-----EEEEE
T ss_pred ceEEEEEEEcCCCCCeEEEEEECcC--CCCCCEEEEeCCEEEEEeHHHHHHhCCC-----EEEEE
Confidence 5679999988765432222 221 12335555556777777 7889999854 66774
No 23
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=48.12 E-value=39 Score=25.58 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=43.9
Q ss_pred CEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccchhhhhhHHHhhcccccchhHHHhcCCcEEEEEEe
Q 027469 108 GVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKNYGGSVEVLSVE 187 (223)
Q Consensus 108 g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~~e~l~e~I~~~L~~IRP~L~~~GGdvelv~v~ 187 (223)
-.|.|.| |.+|.-... -..+.+.|...||+.+..|. +.| ..||.-|+ .++
T Consensus 8 ~~V~I~Y---C~~C~~~~R--a~~laqeLl~tF~~~l~~V~---------------------l~P---~~~G~FEV-~vn 57 (105)
T 2fa8_A 8 PRIAIRY---CTQCNWLLR--AGWMAQEILQTFASDIGEVS---------------------LIP---STGGLFEI-TVD 57 (105)
T ss_dssp CEEEEEE---ETTTTCHHH--HHHHHHHHHHHHGGGCSEEE---------------------EEE---ECTTCEEE-EET
T ss_pred CEEEEEE---CCCCCCHHH--HHHHHHHHHHHcCcccceEE---------------------EEc---CCCcEEEE-EEC
Confidence 4678888 999976554 34788999999986432221 122 25777765 444
Q ss_pred CCEEEEEEeCh-----hhHHHHHHHHH
Q 027469 188 SGDCIVKYVGP-----DSIASGIRAAI 209 (223)
Q Consensus 188 ~g~v~vrl~G~-----~Tlk~gIE~~L 209 (223)
+..|+=|+.++ ..+++.|...|
T Consensus 58 g~lV~SKk~~ggFPe~~elkq~Vr~~i 84 (105)
T 2fa8_A 58 GTIIWERKRDGGFPGPKELKQRIRDLI 84 (105)
T ss_dssp TEEEEEHHHHTSCCCHHHHHHHHHHHH
T ss_pred CEEEEEeccCCCCCCHHHHHHHHHHHh
Confidence 44555555444 45666666655
No 24
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=43.72 E-value=23 Score=26.88 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=28.5
Q ss_pred chhHHHhcCCcEEEEEEeC-CEEEEEEeCh-hhHHHHHHH
Q 027469 170 LRPAIKNYGGSVEVLSVES-GDCIVKYVGP-DSIASGIRA 207 (223)
Q Consensus 170 IRP~L~~~GGdvelv~v~~-g~v~vrl~G~-~Tlk~gIE~ 207 (223)
+-+..=..|+.+-++.+-. ..|.||.+|+ +||.+.+.+
T Consensus 34 v~eGkYr~G~k~i~vRil~~~~vMVRVGGGW~~L~~yL~k 73 (97)
T 1v5r_A 34 LSQGRYRVGEKILFIRMLHNKHVMVRVGGGWETFAGYLLK 73 (97)
T ss_dssp EETTEEEETTEEEEEEEETTTEEEEEETTEEEEHHHHHHH
T ss_pred eCCCcEEeCCeEEEEEEecCCEEEEEeCCcHHHHHHHHHH
Confidence 3333344578888999855 5999999999 899877764
No 25
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=43.36 E-value=42 Score=24.27 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=21.2
Q ss_pred CEEEEEEeCh--hhHHHHHHHHHHhhCCCcceEE
Q 027469 189 GDCIVKYVGP--DSIASGIRAAIKEKFPDIENVV 220 (223)
Q Consensus 189 g~v~vrl~G~--~Tlk~gIE~~L~e~~Pei~~V~ 220 (223)
+.+.++..|- ..=...||+.|.. .|.+..+.
T Consensus 80 ~~~~~~v~gm~C~~C~~~ie~~l~~-~~gv~~~~ 112 (149)
T 2ew9_A 80 GNIELTITGMTCASCVHNIESKLTR-TNGITYAS 112 (149)
T ss_dssp SEEEEEEESCCSHHHHHHHHHHHHH-SSSCCEEE
T ss_pred ceeEEEEEeccCHHHHHHHHHHHhc-CCCeEEEE
Confidence 5677888887 3445678888765 67776654
No 26
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=42.49 E-value=1.7 Score=33.14 Aligned_cols=75 Identities=12% Similarity=0.097 Sum_probs=36.4
Q ss_pred eeeeEEEEecCCCCCCCCC-CCCCcCCcchhhhhHHHHHHHH-HhhhhHHHhcCCceEEEeeeCC----EEEEEE---cc
Q 027469 46 KSGSHETAIRASNPSAPAG-SSPGLYSAHQFDLTAKNVDLVL-EDVRPYLIADGGNIDVVSVEDG----VVSVKL---QG 116 (223)
Q Consensus 46 ~~~~r~~~~~~gtp~a~~~-~~p~~~~~~~~~l~~~~v~~~l-~~IrP~Lq~dGGdVelvdv~~g----~V~Vrl---~G 116 (223)
+.++|++|...|......+ .--+...+.|.....+.+..++ ....|||..- .||+.++ ...++- .+
T Consensus 23 ~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~-----~IDy~~~~~g~gF~~~NPna~~ 97 (118)
T 1r94_A 23 GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGT-----QLDFVKEGLNEGFKFTNPNVKD 97 (118)
T ss_dssp CSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTC-----EEEEEEETTEEEEEEECTTCCC
T ss_pred CceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCC-----EEEEEcCCCcCceEEeCCCCCC
Confidence 4679999988774322111 0001122345555556777777 7889999854 5666422 233332 34
Q ss_pred ccCCCCCchH
Q 027469 117 ACGSCPSSTT 126 (223)
Q Consensus 117 aC~gCpss~~ 126 (223)
.|+ |.+|-.
T Consensus 98 ~Cg-CG~SF~ 106 (118)
T 1r94_A 98 ECG-CGESFK 106 (118)
T ss_dssp ----------
T ss_pred CCC-CCCCcC
Confidence 554 776543
No 27
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=37.93 E-value=2.1 Score=34.27 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=41.1
Q ss_pred eeeeEEEEecCCCCCCCCC---CCCCcCCcchhhhhHHHHHHHH-HhhhhHHHhcCCceEEEeeeCC----EEEEEE---
Q 027469 46 KSGSHETAIRASNPSAPAG---SSPGLYSAHQFDLTAKNVDLVL-EDVRPYLIADGGNIDVVSVEDG----VVSVKL--- 114 (223)
Q Consensus 46 ~~~~r~~~~~~gtp~a~~~---~~p~~~~~~~~~l~~~~v~~~l-~~IrP~Lq~dGGdVelvdv~~g----~V~Vrl--- 114 (223)
+.++|++|...|......+ +. ...+.|.....+.+..++ ....|||..- .||+.++ ...++-
T Consensus 61 ~~~LRv~V~~gGCsG~~Y~l~l~~--~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~-----~IDy~e~l~g~gF~f~NPna 133 (145)
T 2d2a_A 61 MVGVRLGVKQTGCAGFGYVLDSVS--EPDKDDLLFEHDGAKLFVPLQAMPFIDGT-----EVDFVREGLNQIFKFHNPKA 133 (145)
T ss_dssp CCEEEEEEEEETTTEEEEEEEEES--SCCTTEEEEEETTEEEEEEGGGHHHHTTC-----EEEEEEETTEEEEEEECTTT
T ss_pred CceEEEEEECCCCCCcEEEEEECc--CCCCCCeEEEECCEEEEEeHHHHHhhCCC-----EEEEEcCCCcceEEEeCCCC
Confidence 5789999998765332222 11 112345555556777777 7889999854 5666422 333332
Q ss_pred ccccCCCCCc
Q 027469 115 QGACGSCPSS 124 (223)
Q Consensus 115 ~GaC~gCpss 124 (223)
..+| ||.+|
T Consensus 134 ~~~C-GCG~S 142 (145)
T 2d2a_A 134 QNEC-GCGES 142 (145)
T ss_dssp CSCC-CCBCE
T ss_pred Cccc-CCCCC
Confidence 2445 47765
No 28
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=35.20 E-value=94 Score=24.30 Aligned_cols=29 Identities=14% Similarity=0.129 Sum_probs=20.0
Q ss_pred eCCEEEEEEeCh---hhHHHHHHHHHHhhCCC
Q 027469 187 ESGDCIVKYVGP---DSIASGIRAAIKEKFPD 215 (223)
Q Consensus 187 ~~g~v~vrl~G~---~Tlk~gIE~~L~e~~Pe 215 (223)
.+|.+.-++.|. ..+...|++.|+...++
T Consensus 153 ~~G~i~~~~~g~~~~~~~~~~i~~~l~~l~~~ 184 (200)
T 2b7k_A 153 PEGQFVDALGRNYDEKTGVDKIVEHVKSYVPA 184 (200)
T ss_dssp TTSCEEEEECTTCCTTHHHHHHHHHHHHCCCC
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHHhhhh
Confidence 467777778876 46667788777765553
No 29
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=34.36 E-value=1.3e+02 Score=21.81 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHhhCCCcceEE
Q 027469 200 SIASGIRAAIKEKFPDIENVV 220 (223)
Q Consensus 200 Tlk~gIE~~L~e~~Pei~~V~ 220 (223)
.+...||+.|+++||.|..|.
T Consensus 59 ~i~~~ie~~L~~~~~~i~~vt 79 (107)
T 2zzt_A 59 ELTVKIRKEMLKRRDDIEDVT 79 (107)
T ss_dssp HHHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHHHCCCCcEEE
Confidence 466789999999999887654
No 30
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=32.71 E-value=85 Score=23.84 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=19.6
Q ss_pred EEEE-eCCEEEEEEeCh---hhHHHHHHHHHHh
Q 027469 183 VLSV-ESGDCIVKYVGP---DSIASGIRAAIKE 211 (223)
Q Consensus 183 lv~v-~~g~v~vrl~G~---~Tlk~gIE~~L~e 211 (223)
.+=| .+|.+.-++.|. ..+...|++.|.+
T Consensus 139 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~lL~~ 171 (180)
T 3kij_A 139 KYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQ 171 (180)
T ss_dssp EEEECTTSCEEEEECTTCCGGGTHHHHHHHHHH
T ss_pred EEEECCCCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4445 478888888887 4566666666654
No 31
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=29.81 E-value=1.6e+02 Score=25.13 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=33.1
Q ss_pred HHhhcccccchhHHHhcCCcEEEEEEeCCEEEEEEeChhhHHHHHHHHHHhhCCCcc
Q 027469 161 EAVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDIE 217 (223)
Q Consensus 161 e~I~~~L~~IRP~L~~~GGdvelv~v~~g~v~vrl~G~~Tlk~gIE~~L~e~~Pei~ 217 (223)
..++++++.|+-.|+..|-+ .+.+-.|-|.|+.+.--+|.+.|++.||...
T Consensus 321 ~~~~~i~~~i~~~l~~~~~~------~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~ 371 (394)
T 3qfu_A 321 DLFKKTLKPVEKVLQDSGLE------KKDVDDIVLVGGSTRIPKVQQLLESYFDGKK 371 (394)
T ss_dssp HHHHHTHHHHHHHHHHHTCC------GGGCCEEEEESGGGGSHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCC------HHHCCEEEEECCccccHHHHHHHHHHcCCCC
Confidence 34555556677777766522 1123355677887777899999999997543
No 32
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=28.67 E-value=59 Score=22.54 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=15.8
Q ss_pred EEEEE-eCCEEEEEEeChhhHHHHHHHHHHh
Q 027469 182 EVLSV-ESGDCIVKYVGPDSIASGIRAAIKE 211 (223)
Q Consensus 182 elv~v-~~g~v~vrl~G~~Tlk~gIE~~L~e 211 (223)
.++=+ .+|.+. ++.|..+. ..+++.|.+
T Consensus 104 ~~~~id~~g~i~-~~~g~~~~-~~l~~~l~~ 132 (136)
T 1zzo_A 104 AYAFVDPHGNVD-VVRGRMSQ-DELTRRVTA 132 (136)
T ss_dssp EEEEECTTCCEE-EEESCCCH-HHHHHHHHH
T ss_pred eEEEECCCCCEE-EEecCCCH-HHHHHHHHH
Confidence 34555 377777 99998432 234444443
No 33
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=27.68 E-value=15 Score=27.70 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=35.7
Q ss_pred EEccccCCCCCchH-HHHHHHHHHHHHHhCcccccccccccchhhhhhHHHhhcccccchhHHHh
Q 027469 113 KLQGACGSCPSSTT-TMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLDILRPAIKN 176 (223)
Q Consensus 113 rl~GaC~gCpss~~-Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~~e~l~e~I~~~L~~IRP~L~~ 176 (223)
||+|+|+.|....+ .+-..+|+.++..-+ ..+++. .-..+.+.++.++..++.+|..
T Consensus 58 kLkGaa~~~Ga~~L~~~~~~LE~~~r~~~~--~~~l~~-----~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 58 KLHGASCYCGVPTTQRLCQEIESALKRQTP--VEDLEP-----EILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHHHTTCC--GGGGHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHcCCC--HHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999998664 555678888887433 111211 1124556666666777777764
No 34
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=27.16 E-value=16 Score=23.60 Aligned_cols=65 Identities=18% Similarity=0.332 Sum_probs=31.9
Q ss_pred EEEEEcc-ccCCCCCchHHHHHHHHHHHHHHhCcccccccccccchhhhhhHHHhhc--ccccchhHHHhcCCcEEEEE
Q 027469 110 VSVKLQG-ACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNG--HLDILRPAIKNYGGSVEVLS 185 (223)
Q Consensus 110 V~Vrl~G-aC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~~e~l~e~I~~--~L~~IRP~L~~~GGdvelv~ 185 (223)
+.++..| .|.+|.. .|+++|++ ++ .+..+. ++... .....+--.. -.+.|...++..|=++++++
T Consensus 4 ~~~~v~gm~C~~C~~-------~ie~~l~~-~~-gv~~~~-v~~~~-~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~ 71 (74)
T 3dxs_X 4 IQVGVTGMTCAACSN-------SVEAALMN-VN-GVFKAS-VALLQ-NRADVVFDPNLVKEEDIKEEIEDAGFEAEILA 71 (74)
T ss_dssp EEEEEECCCSHHHHH-------HHHHHHHT-ST-TEEEEE-EEGGG-TEEEEEECTTTCCHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEECCcCCHHHHH-------HHHHHHhc-CC-CEEEEE-EEecC-CEEEEEECCCCCCHHHHHHHHHHCCCceEEcc
Confidence 4455666 6888875 78888876 33 343221 11110 0000000001 12466777777777776654
No 35
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=26.44 E-value=1.5e+02 Score=24.84 Aligned_cols=114 Identities=9% Similarity=0.141 Sum_probs=69.9
Q ss_pred hhhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccchhhhhhHHHhhccc
Q 027469 88 DVRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHL 167 (223)
Q Consensus 88 ~IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~~e~l~e~I~~~L 167 (223)
.+.-.|+...+-+.++-=.||.+||-- +.+-.+.=.-+..+++.+++.+. |..+ ....++|+..|
T Consensus 7 ~L~~lL~g~~~p~~Il~grD~~iyVla--------~~qrd~~W~rQ~L~k~~~~e~~~-Vi~~------~~e~~~i~~~L 71 (197)
T 3gr0_A 7 ELDSLLGQEKERFQVLPGRDKMLYVAA--------QNERDTLWARQVLARGDYDKNAR-VINE------NEENKRISIWL 71 (197)
T ss_dssp -----CGGGTTTCEEEECTTSCEEEEC--------SSHHHHHHHHHHHHHHTCTTTEE-EECH------HHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEeCCCCcEEEEE--------ccccHHHHHHHHHHhcCCCCCcE-Eeeh------HHHHHHHHHHH
Confidence 445567777888888877888899966 77777876666777776654333 2222 13456666666
Q ss_pred ccchhHHHhcCCcEEEEEEeC---CEEEEEEe-Ch--hhHHHHHHHHHHhhCCCcceEEe
Q 027469 168 DILRPAIKNYGGSVEVLSVES---GDCIVKYV-GP--DSIASGIRAAIKEKFPDIENVVF 221 (223)
Q Consensus 168 ~~IRP~L~~~GGdvelv~v~~---g~v~vrl~-G~--~Tlk~gIE~~L~e~~Pei~~V~~ 221 (223)
.+--|.|+-| -+++++ -++.|+=. |. ..-..-+.++|++.+|=.+.|.+
T Consensus 72 ~~~~P~l~~~-----~i~l~~P~~P~l~ls~~r~~l~~~~~~~L~~~l~~~~pya~~v~i 126 (197)
T 3gr0_A 72 DTYYPQLAYY-----RIHFDEPRKPVFWLSRQRNTMSKKELEVLSQKLRALMPYADSVNI 126 (197)
T ss_dssp HHHSTTCCEE-----EEECSSTTSCEEEEESSSCCCCHHHHHHHHHHHHHHCTTCSCCEE
T ss_pred HhcCCceeEE-----EEecCCCCCCEEEEEeccccCCHHHHHHHHHHHHHhCCccceeEE
Confidence 5555554322 233332 46655433 44 34458999999999997777765
No 36
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=23.67 E-value=2.2e+02 Score=24.60 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=32.1
Q ss_pred HhhcccccchhHHHhcCCcEEEEEEeCCEEEEEEeChhhHHHHHHHHHHhhCCCc
Q 027469 162 AVNGHLDILRPAIKNYGGSVEVLSVESGDCIVKYVGPDSIASGIRAAIKEKFPDI 216 (223)
Q Consensus 162 ~I~~~L~~IRP~L~~~GGdvelv~v~~g~v~vrl~G~~Tlk~gIE~~L~e~~Pei 216 (223)
.++++++.|+-.|+..|-+ .+.+-.|-|.|+.+.--+|.+.|++.||..
T Consensus 330 ~~~~i~~~i~~~l~~~~~~------~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~ 378 (404)
T 3i33_A 330 LFRGTLEPVEKALRDAKLD------KGQIQEIVLVGGSTRIPKIQKLLQDFFNGK 378 (404)
T ss_dssp HHHHTHHHHHHHHHHHTCC------GGGCCEEEEESGGGGCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHcCCC------HhhCCEEEEECCccccHHHHHHHHHHcCCC
Confidence 4455556677777765422 122334667788777779999999999754
No 37
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.47 E-value=1.6e+02 Score=20.03 Aligned_cols=38 Identities=13% Similarity=0.297 Sum_probs=26.5
Q ss_pred cchhHHHhcC-CcEEEEEEeCCEEEEEEeChhhHHHHHH
Q 027469 169 ILRPAIKNYG-GSVEVLSVESGDCIVKYVGPDSIASGIR 206 (223)
Q Consensus 169 ~IRP~L~~~G-Gdvelv~v~~g~v~vrl~G~~Tlk~gIE 206 (223)
+|+-.+..+| |.|.-+.+-.|.++|.|.-......+++
T Consensus 31 ~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~ 69 (99)
T 2cpd_A 31 MIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMK 69 (99)
T ss_dssp HHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHH
Confidence 4555666666 7888888877899999986644444444
No 38
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=23.09 E-value=1.7e+02 Score=25.01 Aligned_cols=113 Identities=9% Similarity=0.134 Sum_probs=70.9
Q ss_pred hhhHHHhcCCceEEEeeeCCEEEEEEccccCCCCCchHHHHHHHHHHHHHHhCcccccccccccchhhhhhHHHhhcccc
Q 027469 89 VRPYLIADGGNIDVVSVEDGVVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAIKDIRQVYDEEVRETTVEAVNGHLD 168 (223)
Q Consensus 89 IrP~Lq~dGGdVelvdv~~g~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~vk~V~~V~~~~~~e~l~e~I~~~L~ 168 (223)
+.-.|+...+-+.++-=.||.+||-. +.+..+.=.-+..+++.+++.+. |..+ ....++|+..|.
T Consensus 8 L~~lL~g~~~p~~il~grd~~~yVla--------~~qrd~~W~rq~L~k~~~~~~~~-V~~~------~~~~~~i~~~l~ 72 (227)
T 3gr1_A 8 LDSLLGQEKERFQVLPGRDKMLYVAA--------QNERDTLWARQVLARGDYDKNAR-VINE------NEENKRISIWLD 72 (227)
T ss_dssp HHHHTCSCSCSCEEEECTTSCEEEEC--------SSHHHHHHHHHHHHHTTCTTTEE-EECH------HHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEeCCCCcEEEEE--------ccccHHHHHHHHHHhcCCcCCeE-EEeh------HHHHHHHHHHHH
Confidence 44456777777777777788899966 77778876666677776554333 2221 134566766666
Q ss_pred cchhHHHhcCCcEEEEEEeC---CEEEEEEe-Ch--hhHHHHHHHHHHhhCCCcceEEe
Q 027469 169 ILRPAIKNYGGSVEVLSVES---GDCIVKYV-GP--DSIASGIRAAIKEKFPDIENVVF 221 (223)
Q Consensus 169 ~IRP~L~~~GGdvelv~v~~---g~v~vrl~-G~--~Tlk~gIE~~L~e~~Pei~~V~~ 221 (223)
+--|.|+-| -|++++ -++.|+=. +. ..-+.-+.++|++.+|=.+.|.+
T Consensus 73 ~~~P~l~~~-----~i~l~~P~~Pvl~l~~~r~~~~~~~~~~L~~~l~~~~Pya~~v~I 126 (227)
T 3gr1_A 73 TYYPQLAYY-----RIHFDEPRKPVFWLSRQRNTMSKKELEVLSQKLRALMPYADSVNI 126 (227)
T ss_dssp HHCTTCCEE-----EEECSSTTSCEEEEETTTCCCCHHHHHHHHHHHHHHCTTCSCCEE
T ss_pred hcCCceEEE-----EEEcCCCCCCEEEEEeccccCCHHHHHHHHHHHHHhCCccccceE
Confidence 555555322 233332 35555422 44 44558999999999997777765
No 39
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=22.99 E-value=87 Score=22.52 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhhhhHHHhcCCceEEEe
Q 027469 78 TAKNVDLVLEDVRPYLIADGGNIDVVS 104 (223)
Q Consensus 78 ~~~~v~~~l~~IrP~Lq~dGGdVelvd 104 (223)
+.+..+.+.+.+.|.|+.+||.+-..+
T Consensus 15 d~e~y~~Y~~~~~~~l~~~GG~~l~rg 41 (94)
T 3lo3_A 15 DAEKLQQYGARVASTLAKYSGEVLVKG 41 (94)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 457789999999999999999998877
No 40
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=22.51 E-value=1.5e+02 Score=21.44 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=20.8
Q ss_pred EEEEE-eCCEEEEEEeChhhHHHHHHHHHHhh
Q 027469 182 EVLSV-ESGDCIVKYVGPDSIASGIRAAIKEK 212 (223)
Q Consensus 182 elv~v-~~g~v~vrl~G~~Tlk~gIE~~L~e~ 212 (223)
.++=| .+|.+.-++.++..+...|++.+.+.
T Consensus 112 ~~~lid~~G~i~~~~~~~~~l~~~l~~l~~~~ 143 (152)
T 2lrn_A 112 HIILVDPEGKIVAKELRGDDLYNTVEKFVNGA 143 (152)
T ss_dssp EEEEECTTSEEEEECCCTTHHHHHHHHHHTSS
T ss_pred eEEEECCCCeEEEeeCCHHHHHHHHHHHHhhc
Confidence 34555 47888777666677777777766543
No 41
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=21.54 E-value=40 Score=21.93 Aligned_cols=22 Identities=27% Similarity=0.797 Sum_probs=16.6
Q ss_pred EEEEEcc-ccCCCCCchHHHHHHHHHHHHH
Q 027469 110 VSVKLQG-ACGSCPSSTTTMSMGIERVLKE 138 (223)
Q Consensus 110 V~Vrl~G-aC~gCpss~~Tlk~~IE~~L~e 138 (223)
+.++..| .|.+|.. .|+++|.+
T Consensus 7 ~~~~v~gm~C~~C~~-------~ie~~l~~ 29 (73)
T 3fry_A 7 IVLELSGLSCHHCVA-------RVKKALEE 29 (73)
T ss_dssp EEEEEESSBCGGGHH-------HHHHHHHH
T ss_pred EEEEECCCCCHHHHH-------HHHHHhcc
Confidence 4556666 6898876 88889987
No 42
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=21.50 E-value=1e+02 Score=23.26 Aligned_cols=31 Identities=16% Similarity=0.365 Sum_probs=22.9
Q ss_pred EEEEEEccccCCCCCchHHHHHHHHHHHHHHhCccc
Q 027469 109 VVSVKLQGACGSCPSSTTTMSMGIERVLKEKFGDAI 144 (223)
Q Consensus 109 ~V~Vrl~GaC~gCpss~~Tlk~~IE~~L~e~lp~~v 144 (223)
.|.|.| |.+|....... .+.+.|...||+.+
T Consensus 5 ~V~I~Y---C~~C~w~~Ra~--~laqeLl~tF~~~l 35 (105)
T 2p0g_A 5 QIEIYY---CRQCNWMLRSA--WLSQELLHTFSEEI 35 (105)
T ss_dssp EEEEEE---ETTTTCHHHHH--HHHHHHHHHTTTTE
T ss_pred EEEEEE---CCCCCChHHHH--HHHHHHHHHcCccc
Confidence 467777 99997755443 78889999998644
No 43
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=20.71 E-value=1.7e+02 Score=21.30 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=21.1
Q ss_pred EEEE-eCCEEEEEEeCh---hhHHHHHHHHHHhhC
Q 027469 183 VLSV-ESGDCIVKYVGP---DSIASGIRAAIKEKF 213 (223)
Q Consensus 183 lv~v-~~g~v~vrl~G~---~Tlk~gIE~~L~e~~ 213 (223)
++=| .+|.+.-++.|. ..+...|++.|.+.-
T Consensus 133 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~~~ 167 (171)
T 2rli_A 133 IYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFR 167 (171)
T ss_dssp EEEECTTSCEEEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 4444 467777788887 566777777776643
Done!