BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027470
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|Q Chain Q, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|R Chain R, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
pdb|1TQE|S Chain S, Mechanism Of Recruitment Of Class Ii Histone
Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 45/59 (76%)
Query: 1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
MGR KI+I RI + NRQVT++KR+ G+ KKA EL+VLCD +++LI+F++ + +Y S
Sbjct: 1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAS 59
>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|B Chain B, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|C Chain C, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
pdb|3MU6|D Chain D, Inhibiting The Binding Of Class Iia Histone Deacetylases
To Myocyte Enhancer Factor-2 By Small Molecules
Length = 71
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 45/58 (77%)
Query: 2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
GR KI+I RI + NRQVT++KR+ G+ KKA EL+VLCD +++LI+F+++ K +Y S
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58
>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|B Chain B, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|I Chain I, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3KOV|J Chain J, Structure Of Mef2a Bound To Dna Reveals A Completely
Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
RECRUITS Transcription Co-Factors
pdb|3P57|A Chain A, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|B Chain B, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|C Chain C, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|D Chain D, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|I Chain I, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
pdb|3P57|J Chain J, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
On Dna
Length = 90
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 45/58 (77%)
Query: 2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
GR KI+I RI + NRQVT++KR+ G+ KKA EL+VLCD +++LI+F+++ K +Y S
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58
>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|B Chain B, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|C Chain C, Crystal Structure Of Mef2a Core Bound To Dna
pdb|1EGW|D Chain D, Crystal Structure Of Mef2a Core Bound To Dna
Length = 77
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 45/58 (77%)
Query: 2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
GR KI+I RI + NRQVT++KR+ G+ KKA EL+VLCD +++LI+F+++ K +Y S
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58
>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
pdb|1N6J|B Chain B, Structural Basis Of Sequence-Specific Recruitment Of
Histone Deacetylases By Myocyte Enhancer Factor-2
Length = 93
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 44/58 (75%)
Query: 2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
GR KI+I RI + NRQVT++KR+ G+ KKA EL+VLCD +++LI+F++ + +Y S
Sbjct: 1 GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAS 58
>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
pdb|1C7U|B Chain B, Complex Of The Dna Binding Core Domain Of The
Transcription Factor Mef2a With A 20mer Oligonucleotide
Length = 85
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 45/58 (77%)
Query: 2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
GR KI+I RI + NRQVT++KR+ G+ KKA EL+VL DA+++LI+F+++ K +Y S
Sbjct: 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAS 58
>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
pdb|1MNM|B Chain B, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
Crystal Structure
Length = 100
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 3 RGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISP 60
R KIEIK IEN T R VT+SKR++GI KKA EL+VL +V L++ S TG + + +P
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75
>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1SRS|B Chain B, Serum Response Factor (Srf) Core Complexed With Specific
Sre Dna
pdb|1HBX|A Chain A, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|B Chain B, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|D Chain D, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
pdb|1HBX|E Chain E, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
Length = 92
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEY 57
GR KI+++ I+N R T+SKR+ GI KKA EL+ L +V L++ S TG + +
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 66
>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
pdb|1K6O|C Chain C, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
Complex
Length = 103
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYIS 59
GR KI+++ I+N R T+SKR+ GI KKA EL+ L +V L++ S TG + + +
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67
>pdb|3BKK|A Chain A, Tesis Ace Co-Crystal Structure With Ketone Ace Inhibitor
Kaf
pdb|3BKL|A Chain A, Testis Ace Co-Crystal Structure With Ketone Ace Inhibitor
Kaw
pdb|3L3N|A Chain A, Testis Ace Co-Crystal Structure With Novel Inhibitor Lisw
Length = 591
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 16/65 (24%)
Query: 124 LEQNMSSSAATVR----ERKFHVIKTQTDTYK---KKVRNLE---------ERHGNILLD 167
L++NM + T++ RKF V + Q T K KKV++LE E + ILLD
Sbjct: 46 LQKNMQIAQHTLKYGTQARKFDVNQLQNTTIKRIIKKVQDLERAALPAQELEEYNKILLD 105
Query: 168 FETKY 172
ET Y
Sbjct: 106 METTY 110
>pdb|2IUL|A Chain A, Human Tace G13 Mutant
Length = 591
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 16/65 (24%)
Query: 124 LEQNMSSSAATVR----ERKFHVIKTQTDTYK---KKVRNLE---------ERHGNILLD 167
L++NM + T++ RKF V + Q T K KKV++LE E + ILLD
Sbjct: 46 LQKNMQIAQHTLKYGTQARKFDVNQLQNTTIKRIIKKVQDLERAALPAQELEEYNKILLD 105
Query: 168 FETKY 172
ET Y
Sbjct: 106 METTY 110
>pdb|2YDM|A Chain A, Structural Characterization Of Angiotensin-I Converting
Enzyme In Complex With A Selenium Analogue Of Captopril
Length = 589
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 16/65 (24%)
Query: 124 LEQNMSSSAATVR----ERKFHVIKTQTDTYK---KKVRNLE---------ERHGNILLD 167
L++NM + T++ RKF V + Q T K KKV++LE E + ILLD
Sbjct: 46 LQKNMQIANHTLKYGTQARKFDVNQLQNTTIKRIIKKVQDLERAALPAQELEEYNKILLD 105
Query: 168 FETKY 172
ET Y
Sbjct: 106 METTY 110
>pdb|1O8A|A Chain A, Crystal Structure Of Human Angiotensin Converting Enzyme
(Native).
pdb|1UZF|A Chain A, Complex Of The Anti-Hypertensive Drug Captopril An The
Human Testicular Angiotensin I-Converting Enzyme
pdb|4APH|A Chain A, Human Angiotensin-Converting Enzyme In Complex With
Angiotensin-Ii
pdb|4APJ|A Chain A, Human Angiotensin-Converting Enzyme In Complex With Bppb
pdb|1O86|A Chain A, Crystal Structure Of Human Angiotensin Converting Enzyme
In Complex With Lisinopril.
pdb|1UZE|A Chain A, Complex Of The Anti-hypertensive Drug Enalaprilat And The
Human Testicular Angiotensin I-converting Enzyme
Length = 589
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 16/65 (24%)
Query: 124 LEQNMSSSAATVR----ERKFHVIKTQTDTYK---KKVRNLE---------ERHGNILLD 167
L++NM + T++ RKF V + Q T K KKV++LE E + ILLD
Sbjct: 46 LQKNMQIANHTLKYGTQARKFDVNQLQNTTIKRIIKKVQDLERAALPAQELEEYNKILLD 105
Query: 168 FETKY 172
ET Y
Sbjct: 106 METTY 110
>pdb|2OC2|A Chain A, Structure Of Testis Ace With Rxpa380
Length = 591
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 16/65 (24%)
Query: 124 LEQNMSSSAATVR----ERKFHVIKTQTDTYK---KKVRNLE---------ERHGNILLD 167
L++NM + T++ RKF V + Q T K KKV++LE E + ILLD
Sbjct: 46 LQKNMQIANHTLKYGTQARKFDVNQLQNTTIKRIIKKVQDLERAALPAQELEEYNKILLD 105
Query: 168 FETKY 172
ET Y
Sbjct: 106 METTY 110
>pdb|2XY9|A Chain A, Human Angiotensin Converting Enzyme In Complex With
Phosphinic Tripeptide
Length = 585
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 16/65 (24%)
Query: 124 LEQNMSSSAATVR----ERKFHVIKTQTDTYK---KKVRNLE---------ERHGNILLD 167
L++NM + T++ RKF V + Q T K KKV++LE E + ILLD
Sbjct: 43 LQKNMQIANHTLKYGTQARKFDVNQLQNTTIKRIIKKVQDLERAALPAQELEEYNKILLD 102
Query: 168 FETKY 172
ET Y
Sbjct: 103 METTY 107
>pdb|2IUX|A Chain A, Human Tace Mutant G1234
Length = 591
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 16/65 (24%)
Query: 124 LEQNMSSSAATVR----ERKFHVIKTQTDTYK---KKVRNLE---------ERHGNILLD 167
L++NM + T++ RKF V + Q T K KKV++LE E + ILLD
Sbjct: 46 LQKNMQIANHTLKYGTQARKFDVNQLQNTTIKRIIKKVQDLERAALPAQELEEYNKILLD 105
Query: 168 FETKY 172
ET Y
Sbjct: 106 METTY 110
>pdb|3TKL|B Chain B, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 267
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 14/70 (20%)
Query: 65 KKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGEDLDD--LTFEE-L 121
+KM D+Y++++ + QE+ +K +E+ KL D +R G+DL+D T+EE L
Sbjct: 17 QKMLDEYEQAI---------KRAQENIKKGEELEKKL--DKLERQGKDLEDKYKTYEENL 65
Query: 122 RGLEQNMSSS 131
G E+ ++ S
Sbjct: 66 EGFEKLLTDS 75
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 58 ISPTTTTKKMFDQYQKSLGV-DLW--STHYA 85
I P TT K++FDQ K++G+ ++W HY
Sbjct: 19 IQPNTTGKQLFDQVVKTIGLREVWYFGLHYV 49
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix
Of Moesin
Length = 346
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 58 ISPTTTTKKMFDQYQKSLGV-DLW 80
I P TT K++FDQ K++G+ ++W
Sbjct: 20 IQPNTTGKQLFDQVVKTIGLREVW 43
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 58 ISPTTTTKKMFDQYQKSLGV-DLW 80
I P TT K++FDQ K++G+ ++W
Sbjct: 17 IQPNTTGKQLFDQVVKTIGLREVW 40
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 58 ISPTTTTKKMFDQYQKSLGV-DLW 80
I P TT K++FDQ K++G+ ++W
Sbjct: 20 IQPNTTGKQLFDQVVKTIGLREVW 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,621,586
Number of Sequences: 62578
Number of extensions: 266451
Number of successful extensions: 741
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 732
Number of HSP's gapped (non-prelim): 40
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)