Query 027470
Match_columns 223
No_of_seqs 248 out of 1705
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 17:28:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1E-39 3.6E-44 227.9 3.9 73 2-76 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 4.7E-39 1.6E-43 229.9 4.0 73 2-76 1-73 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.2E-37 4E-42 226.4 3.3 77 1-82 16-92 (100)
4 1hbx_A SRF, serum response fac 100.0 2.1E-37 7E-42 222.3 2.4 70 1-72 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 8.9E-37 3E-41 223.1 2.6 69 1-71 9-77 (103)
6 2jee_A YIIU; FTSZ, septum, coi 87.7 4.1 0.00014 27.8 8.0 43 116-163 3-45 (81)
7 2w6a_A ARF GTPase-activating p 82.6 7.3 0.00025 24.8 8.5 53 114-166 8-62 (63)
8 1dip_A Delta-sleep-inducing pe 80.6 2.6 9.1E-05 28.1 4.4 28 141-168 18-45 (78)
9 2dgc_A Protein (GCN4); basic d 74.8 9.9 0.00034 24.5 5.9 36 131-170 20-55 (63)
10 1j1e_C Troponin I, TNI; THIN f 73.1 27 0.00092 27.3 9.1 33 111-143 53-85 (180)
11 1dh3_A Transcription factor CR 72.3 14 0.00046 23.1 6.0 34 133-170 14-47 (55)
12 3nmd_A CGMP dependent protein 71.9 19 0.00065 23.9 7.5 51 112-169 14-64 (72)
13 2oa5_A Hypothetical protein BQ 71.0 17 0.00058 26.1 6.8 58 82-139 8-67 (110)
14 1j1d_C Troponin I, TNI; THIN f 68.9 33 0.0011 25.5 10.2 33 111-143 53-85 (133)
15 1ytz_T Troponin T; muscle, THI 68.8 13 0.00044 26.7 5.9 33 111-143 37-69 (107)
16 2yy0_A C-MYC-binding protein; 68.1 12 0.0004 23.3 4.9 28 142-169 23-50 (53)
17 3s9g_A Protein hexim1; cyclin 67.6 26 0.00089 24.6 7.0 27 144-170 64-90 (104)
18 1a93_B MAX protein, coiled coi 67.5 9.1 0.00031 21.6 3.8 27 137-163 6-32 (34)
19 1t2k_D Cyclic-AMP-dependent tr 66.9 19 0.00064 22.7 5.9 34 132-169 13-46 (61)
20 2dfs_A Myosin-5A; myosin-V, in 66.1 13 0.00045 37.1 7.3 22 148-169 1019-1040(1080)
21 2wt7_A Proto-oncogene protein 65.7 20 0.00069 22.8 5.9 34 132-169 14-47 (63)
22 2zqm_A Prefoldin beta subunit 65.1 28 0.00097 24.4 7.3 39 131-170 71-109 (117)
23 2l16_A SEC-independent protein 63.7 0.36 1.2E-05 32.9 -3.1 29 43-75 16-44 (78)
24 1jnm_A Proto-oncogene C-JUN; B 62.7 25 0.00086 22.2 5.9 34 132-169 13-46 (62)
25 1ci6_A Transcription factor AT 61.3 28 0.00094 22.2 5.9 34 132-169 14-47 (63)
26 2oqq_A Transcription factor HY 60.0 24 0.00082 20.8 5.4 25 144-168 16-40 (42)
27 2rpa_A Katanin P60 ATPase-cont 59.3 4.8 0.00017 27.2 2.0 35 29-76 16-50 (78)
28 2l5g_A GPS2 protein, G protein 59.2 16 0.00055 20.9 3.9 23 144-166 14-36 (38)
29 3gp4_A Transcriptional regulat 54.8 56 0.0019 24.1 7.6 54 115-169 59-112 (142)
30 1go4_E MAD1 (mitotic arrest de 53.9 5 0.00017 28.5 1.4 20 140-159 77-96 (100)
31 1j1d_B Troponin T, TNT; THIN f 53.3 57 0.002 23.2 7.0 32 112-143 38-69 (106)
32 3hnw_A Uncharacterized protein 51.8 71 0.0024 23.7 8.3 24 145-168 110-133 (138)
33 1gd2_E Transcription factor PA 51.1 42 0.0014 22.0 5.6 39 130-168 18-59 (70)
34 2l5g_B Putative uncharacterize 50.8 36 0.0012 20.0 5.6 38 116-161 2-39 (42)
35 4gfh_A DNA topoisomerase 2; to 48.2 1.9E+02 0.0066 29.1 12.2 43 26-74 958-1000(1177)
36 3qx3_A DNA topoisomerase 2-bet 47.1 2E+02 0.0069 27.6 11.9 26 45-74 598-623 (803)
37 3oja_B Anopheles plasmodium-re 46.4 1.6E+02 0.0056 26.3 11.5 24 145-168 551-574 (597)
38 1q08_A Zn(II)-responsive regul 44.6 69 0.0024 21.5 6.5 54 115-169 16-70 (99)
39 1deb_A APC protein, adenomatou 44.1 28 0.00095 21.4 3.4 24 83-106 4-27 (54)
40 1g6u_A Domain swapped dimer; d 42.6 49 0.0017 19.2 4.6 26 114-139 15-40 (48)
41 1m1j_B Fibrinogen beta chain; 42.6 1.4E+02 0.0049 26.7 9.4 44 27-75 55-98 (464)
42 3gpv_A Transcriptional regulat 42.5 1E+02 0.0034 22.8 7.6 54 115-169 73-126 (148)
43 2dfs_A Myosin-5A; myosin-V, in 41.9 1.6E+02 0.0055 29.3 10.5 8 144-151 1036-1043(1080)
44 3nrf_A APAG protein; structura 41.6 1.4 4.8E-05 31.6 -3.1 42 11-57 21-62 (106)
45 3iv1_A Tumor susceptibility ge 40.0 46 0.0016 22.3 4.4 40 119-159 35-74 (78)
46 1go4_E MAD1 (mitotic arrest de 39.8 42 0.0014 23.7 4.4 25 145-169 12-36 (100)
47 1m2d_A [2Fe-2S] ferredoxin; th 39.6 16 0.00054 25.8 2.2 33 39-73 59-91 (110)
48 3ghg_A Fibrinogen alpha chain; 39.4 2.3E+02 0.0077 25.9 10.6 41 127-168 114-154 (562)
49 2aze_A Transcription factor DP 38.2 1.3E+02 0.0044 22.8 8.0 48 117-166 3-50 (155)
50 2xus_A Breast cancer metastasi 37.2 70 0.0024 19.5 5.5 33 118-157 12-44 (49)
51 1ytz_I Troponin I; muscle, THI 36.4 1E+02 0.0036 24.0 6.6 32 111-143 51-82 (182)
52 3oja_A Leucine-rich immune mol 35.8 2.2E+02 0.0076 24.8 11.9 37 129-169 423-459 (487)
53 2oxj_A Hybrid alpha/beta pepti 35.8 59 0.002 18.1 3.6 21 148-168 4-24 (34)
54 2ky6_A Mediator of RNA polymer 35.0 28 0.00096 26.8 3.0 24 36-59 116-140 (166)
55 2v71_A Nuclear distribution pr 33.8 1.6E+02 0.0055 23.0 7.4 90 79-168 14-111 (189)
56 1hjb_A Ccaat/enhancer binding 33.4 1.1E+02 0.0039 20.7 6.0 22 148-169 39-60 (87)
57 1deq_A Fibrinogen (alpha chain 33.3 2.4E+02 0.0083 24.6 11.2 59 28-97 23-82 (390)
58 1a0r_P Phosducin, MEKA, PP33; 31.7 50 0.0017 26.8 4.3 34 111-144 67-102 (245)
59 1gu4_A CAAT/enhancer binding p 31.0 1.2E+02 0.004 20.2 6.0 23 147-169 38-60 (78)
60 3na7_A HP0958; flagellar bioge 30.0 2.2E+02 0.0074 22.9 9.2 25 117-141 88-112 (256)
61 1t2k_D Cyclic-AMP-dependent tr 30.0 1E+02 0.0035 19.1 5.4 28 141-168 32-59 (61)
62 3m48_A General control protein 29.7 57 0.002 18.1 2.9 20 149-168 4-23 (33)
63 3q4f_C DNA repair protein XRCC 29.5 1.3E+02 0.0043 23.5 5.9 24 145-168 161-184 (186)
64 1ci6_A Transcription factor AT 29.1 1.1E+02 0.0038 19.3 5.6 30 139-168 31-60 (63)
65 3hnw_A Uncharacterized protein 28.1 1.8E+02 0.0061 21.4 11.3 21 148-168 106-126 (138)
66 2zvv_Y Cyclin-dependent kinase 27.9 7.6 0.00026 20.2 -0.8 12 15-26 15-26 (26)
67 1m1j_C Fibrinogen gamma chain; 27.6 3.1E+02 0.011 24.0 12.8 59 51-111 12-70 (409)
68 3twe_A Alpha4H; unknown functi 27.3 69 0.0024 16.4 3.4 16 90-105 9-24 (27)
69 3na7_A HP0958; flagellar bioge 26.9 2.5E+02 0.0084 22.6 11.2 44 66-109 74-117 (256)
70 1gk7_A Vimentin; intermediate 26.4 97 0.0033 17.7 4.9 25 145-169 13-37 (39)
71 3a7p_A Autophagy protein 16; c 26.2 2.1E+02 0.0072 21.6 8.3 46 123-168 86-133 (152)
72 3oja_B Anopheles plasmodium-re 25.8 3.5E+02 0.012 24.0 12.1 33 137-169 522-554 (597)
73 2yan_A Glutaredoxin-3; oxidore 25.1 36 0.0012 23.1 2.0 28 45-72 19-46 (105)
74 3c3f_A Alpha/beta peptide with 24.6 98 0.0034 17.2 3.6 19 149-167 5-23 (34)
75 1fo5_A Thioredoxin; disulfide 23.4 73 0.0025 19.7 3.3 26 43-73 4-29 (85)
76 1z0k_B FYVE-finger-containing 23.4 1.6E+02 0.0055 19.2 5.0 29 135-163 36-64 (69)
77 3gx8_A Monothiol glutaredoxin- 23.3 40 0.0014 24.0 2.0 29 44-72 17-45 (121)
78 1kd8_B GABH BLL, GCN4 acid bas 22.7 1.1E+02 0.0039 17.2 3.6 10 156-165 19-28 (36)
79 3ol1_A Vimentin; structural ge 22.4 2.1E+02 0.0073 20.3 9.1 19 150-168 88-106 (119)
80 2wvr_A Geminin; DNA replicatio 22.2 73 0.0025 25.3 3.4 52 65-116 100-166 (209)
81 3s4r_A Vimentin; alpha-helix, 22.2 1.9E+02 0.0066 19.7 7.8 57 89-168 23-79 (93)
82 3v1a_A Computational design, M 21.3 1.4E+02 0.0047 18.0 3.8 40 124-163 6-45 (48)
83 1r8d_A Transcription activator 21.3 1.9E+02 0.0064 19.8 5.3 47 115-168 59-105 (109)
84 3thf_A Protein shroom; coiled- 21.2 1.8E+02 0.0063 22.7 5.5 34 132-169 10-43 (190)
85 3aei_A Prefoldin beta subunit 21.0 1.3E+02 0.0044 20.1 4.0 26 141-166 71-96 (99)
86 1nho_A Probable thioredoxin; b 20.8 72 0.0025 19.8 2.8 26 43-73 3-28 (85)
87 1a92_A Delta antigen; leucine 20.2 1.2E+02 0.0041 18.3 3.3 23 142-164 18-40 (50)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1e-39 Score=227.87 Aligned_cols=73 Identities=44% Similarity=0.749 Sum_probs=69.1
Q ss_pred CcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhhcC
Q 027470 2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLG 76 (223)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~~ 76 (223)
||+||+|++|+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+ |++||+||+..++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~--~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC--HHHHHHHHHhccC
Confidence 899999999999999999999999999999999999999999999999999999999874 9999999998753
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=4.7e-39 Score=229.95 Aligned_cols=73 Identities=44% Similarity=0.749 Sum_probs=70.5
Q ss_pred CcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhhcC
Q 027470 2 GRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLG 76 (223)
Q Consensus 2 gR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~~ 76 (223)
||+||+|++|+|+++|||||||||+||||||+||||||||+||||||||+|++|+|+||+ |..||+||+..+.
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~--~~~il~rY~~~~~ 73 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEYNE 73 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHHCCS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCC--HHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999999999999999964 9999999998765
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.2e-37 Score=226.36 Aligned_cols=77 Identities=43% Similarity=0.578 Sum_probs=71.0
Q ss_pred CCcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhhcCcccc
Q 027470 1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLGVDLW 80 (223)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~~~~~~ 80 (223)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+ +..|+++|.. .++|
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~G---~~lw 90 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEG---RNLI 90 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHH---HHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhhC---CcHH
Confidence 8999999999999999999999999999999999999999999999999999999999996 7799988864 3455
Q ss_pred cc
Q 027470 81 ST 82 (223)
Q Consensus 81 ~~ 82 (223)
+.
T Consensus 91 ~~ 92 (100)
T 1mnm_A 91 QA 92 (100)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=2.1e-37 Score=222.31 Aligned_cols=70 Identities=36% Similarity=0.513 Sum_probs=67.5
Q ss_pred CCcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHh
Q 027470 1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQ 72 (223)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~ 72 (223)
|||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+ |..||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999985 889999764
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=8.9e-37 Score=223.11 Aligned_cols=69 Identities=36% Similarity=0.520 Sum_probs=66.7
Q ss_pred CCcccceeeeeCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHH
Q 027470 1 MGRGKIEIKRIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQY 71 (223)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY 71 (223)
|||+||+|++|||.++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+ |..||+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999985 88999874
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.70 E-value=4.1 Score=27.78 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027470 116 LTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGN 163 (223)
Q Consensus 116 Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~ 163 (223)
+|++=|..||..+..++..| .++..+|+.||.|...|.+++..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999887 45566667777776665555555
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=82.57 E-value=7.3 Score=24.81 Aligned_cols=53 Identities=13% Similarity=0.277 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHhhHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027470 114 DDLTFEELRGLEQNMSSSAATVRE--RKFHVIKTQTDTYKKKVRNLEERHGNILL 166 (223)
Q Consensus 114 ~~Ls~~EL~~LE~~Le~~l~~IR~--RK~~ll~~qi~~lkkk~~~l~een~~L~~ 166 (223)
+..+++|..++...|-.+=.+|.. +-+.-+.+++..++++...|+.||..|+.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 347889988888888777666652 23344568888999999999999999874
No 8
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=80.62 E-value=2.6 Score=28.09 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=22.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 141 HVIKTQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 141 ~ll~~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
+++.++|.+|..|...|+.||..|+.-.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567888888888888888888887665
No 9
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=74.81 E-value=9.9 Score=24.47 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 027470 131 SAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFET 170 (223)
Q Consensus 131 ~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~~ 170 (223)
+-.+.|.||. +.++.|..++..|..+|..|..++..
T Consensus 20 AArrsR~RK~----~~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 20 AARRSRARKL----QRMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666664 44578999999999999999988753
No 10
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=73.09 E-value=27 Score=27.33 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=30.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027470 111 EDLDDLTFEELRGLEQNMSSSAATVRERKFHVI 143 (223)
Q Consensus 111 edL~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll 143 (223)
-+|++||.++|+++=..|...+..+-+-|+-+-
T Consensus 53 Lnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 389999999999999999999999998888774
No 11
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=72.32 E-value=14 Score=23.09 Aligned_cols=34 Identities=15% Similarity=0.320 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 027470 133 ATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFET 170 (223)
Q Consensus 133 ~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~~ 170 (223)
..-|.||... ++.|..++..|+.+|..|..++..
T Consensus 14 ~rSR~RKk~~----~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 14 RESRRKKKEY----VKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666544 578999999999999999998864
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.87 E-value=19 Score=23.89 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 112 DLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 112 dL~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
.+++++. +.+|+..|......||.+-. .|..+.+......++...|+.++.
T Consensus 14 ~~~~mgt--i~eLq~~L~~K~eELr~kd~-----~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 14 SIEGRGS--LRDLQYALQEKIEELRQRDA-----LIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp -----CH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCc--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544 88899999999888887653 356777777777778888888774
No 13
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=70.96 E-value=17 Score=26.10 Aligned_cols=58 Identities=22% Similarity=0.285 Sum_probs=40.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhh--cCCCCCCCCHHHHHHHHHHHHhhHHHHHHHH
Q 027470 82 THYAKMQESYRKLKEINNKLRKDIRQR--MGEDLDDLTFEELRGLEQNMSSSAATVRERK 139 (223)
Q Consensus 82 ~~~e~lq~el~kLk~~~~~L~~e~r~~--~GedL~~Ls~~EL~~LE~~Le~~l~~IR~RK 139 (223)
..++.|..++.+|+-+|..|++.++.- .+.+-.-|+..+=..+-...-.+|...-.+|
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999988653 1235567898887777776666666665555
No 14
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=68.86 E-value=33 Score=25.48 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=30.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027470 111 EDLDDLTFEELRGLEQNMSSSAATVRERKFHVI 143 (223)
Q Consensus 111 edL~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll 143 (223)
-+|++||.++|+++=..|...+..+-+-|+-+-
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 479999999999999999999999999888774
No 15
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=68.77 E-value=13 Score=26.66 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=29.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027470 111 EDLDDLTFEELRGLEQNMSSSAATVRERKFHVI 143 (223)
Q Consensus 111 edL~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll 143 (223)
-+|++||.++|+++=..|...+..+-+-|+-+-
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE 69 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFA 69 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 389999999999999999999999998888774
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=68.15 E-value=12 Score=23.30 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=22.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 142 VIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 142 ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
.|..+++.|+.|...|.+++..|..++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888888888888888888874
No 17
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=67.62 E-value=26 Score=24.64 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=21.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 027470 144 KTQTDTYKKKVRNLEERHGNILLDFET 170 (223)
Q Consensus 144 ~~qi~~lkkk~~~l~een~~L~~~~~~ 170 (223)
..+|..|..++..|..||..|..+-++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888999998887653
No 18
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=67.53 E-value=9.1 Score=21.60 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=20.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027470 137 ERKFHVIKTQTDTYKKKVRNLEERHGN 163 (223)
Q Consensus 137 ~RK~~ll~~qi~~lkkk~~~l~een~~ 163 (223)
.||.+-....|+.++++...|+++-..
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 478888888899988887777776543
No 19
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=66.92 E-value=19 Score=22.72 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 132 AATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 132 l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
-.+.|.||.+. ++.|..++..|..+|..|..++.
T Consensus 13 A~k~R~rKk~~----~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 13 ASRSRQKRKVW----VQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677544 56888888888888888888774
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=66.11 E-value=13 Score=37.07 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027470 148 DTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 148 ~~lkkk~~~l~een~~L~~~~~ 169 (223)
+.|+.|+..|+++|..|+.++.
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~ 1040 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKE 1040 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888764
No 21
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.69 E-value=20 Score=22.80 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 132 AATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 132 l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
-.+-|.||.+. ++.|..++..|..+|..|..++.
T Consensus 14 A~rcR~rKk~~----~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 14 AAKCRNRRREL----TDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666444 56888888889999998888874
No 22
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=65.10 E-value=28 Score=24.42 Aligned_cols=39 Identities=10% Similarity=0.305 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 027470 131 SAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFET 170 (223)
Q Consensus 131 ~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~~ 170 (223)
+...+..|+..+ ...|+.+.++...++++-..+...+.+
T Consensus 71 a~~~L~~~~e~i-e~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 71 AVAELKEKIETL-EVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333 667777777777777777777776644
No 23
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=63.71 E-value=0.36 Score=32.92 Aligned_cols=29 Identities=17% Similarity=0.372 Sum_probs=22.9
Q ss_pred eeEEEecCCCCcccccCCcchhhHHHHHHhhhc
Q 027470 43 VSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSL 75 (223)
Q Consensus 43 valIvfs~~gk~~~~~sps~~~~~ii~RY~~~~ 75 (223)
|+||||+| +|+++.+. ++-..+..|++..
T Consensus 16 VaLlvfGp-kkLP~l~r---~lGk~ir~fK~~~ 44 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGR---AAGRTLLEFKSAT 44 (78)
T ss_dssp HHHHHSCT-TTHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHH---HHHHHHHHHHHHH
Confidence 78999999 89999875 4667777777664
No 24
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=62.65 E-value=25 Score=22.21 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 132 AATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 132 l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
-.+-|.||.+. ++.|..++..|..+|..|..++.
T Consensus 13 A~k~R~rKk~~----~~~Le~~v~~L~~~n~~L~~~v~ 46 (62)
T 1jnm_A 13 ASKSRKRKLER----IARLEEKVKTLKAQNSELASTAN 46 (62)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666444 57899999999999999988875
No 25
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=61.28 E-value=28 Score=22.22 Aligned_cols=34 Identities=15% Similarity=0.294 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 132 AATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 132 l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
-.+-|.+|. +.++.+..+...|..+|..|..++.
T Consensus 14 A~R~R~KKk----~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 14 ATRYRQKKR----AEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455553 3456777777777777777777664
No 26
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.99 E-value=24 Score=20.77 Aligned_cols=25 Identities=4% Similarity=0.178 Sum_probs=19.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 144 KTQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 144 ~~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
...+..|..++..|+.||..|++.+
T Consensus 16 e~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 4456677888888889999998765
No 27
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=59.31 E-value=4.8 Score=27.22 Aligned_cols=35 Identities=17% Similarity=0.333 Sum_probs=27.8
Q ss_pred HHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhhcC
Q 027470 29 FKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSLG 76 (223)
Q Consensus 29 ~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~~ 76 (223)
+|+|+|.+.+++=|.|++.|.. +.+-|+||-....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-------------~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-------------VLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-------------HHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHH-------------HHHHHHHHHHhcC
Confidence 6899999999999988876643 5567888877665
No 28
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=59.24 E-value=16 Score=20.92 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=16.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 027470 144 KTQTDTYKKKVRNLEERHGNILL 166 (223)
Q Consensus 144 ~~qi~~lkkk~~~l~een~~L~~ 166 (223)
.+||..++.|...|.+|...|..
T Consensus 14 keQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777666643
No 29
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=54.82 E-value=56 Score=24.07 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 115 DLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
++|++++..+-...+.+-..+..+ ..++.++++.+..+...|+.....|...+.
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~ 112 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKID 112 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888776654433333222 346677777777777777777777776664
No 30
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=53.93 E-value=5 Score=28.50 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=10.7
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 027470 140 FHVIKTQTDTYKKKVRNLEE 159 (223)
Q Consensus 140 ~~ll~~qi~~lkkk~~~l~e 159 (223)
.+.+..+++.|+.+++.+++
T Consensus 77 ~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 77 HSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33455666666666655443
No 31
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=53.26 E-value=57 Score=23.16 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=29.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027470 112 DLDDLTFEELRGLEQNMSSSAATVRERKFHVI 143 (223)
Q Consensus 112 dL~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll 143 (223)
+|++||.++|+++-..|...+..+-+-|+-+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 79999999999999999999999998888774
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.77 E-value=71 Score=23.68 Aligned_cols=24 Identities=4% Similarity=0.172 Sum_probs=13.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 145 TQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 145 ~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
.+++.++++...|++++..|...+
T Consensus 110 ~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666555555444
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=51.15 E-value=42 Score=21.97 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 130 SSAATVRERKFHVIK---TQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 130 ~~l~~IR~RK~~ll~---~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
.+-...|.||.+-+. .++..|......+..+|..|+..+
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677755443 223333333333344444444443
No 34
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.76 E-value=36 Score=20.03 Aligned_cols=38 Identities=32% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027470 116 LTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERH 161 (223)
Q Consensus 116 Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een 161 (223)
+|-+||.+=-+.++.-+.++ .++|..+++|.+.|++.-
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kt--------e~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMV--------EQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhh
Confidence 45566655444444333333 466788899988887753
No 35
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=48.19 E-value=1.9e+02 Score=29.09 Aligned_cols=43 Identities=16% Similarity=0.420 Sum_probs=28.4
Q ss_pred ccHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhh
Q 027470 26 NGIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKS 74 (223)
Q Consensus 26 ~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~ 74 (223)
++|+|+-. |.+-.++ ..+++|.+.|++..|.+ +++||+.|-.+
T Consensus 958 ~~L~k~t~-L~~s~~~-~Nm~~~d~~g~i~k~~~----l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERFK-LISPISL-MNMVAFDPHGKIKKYNS----VNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHTT-CEEEECC-SCCEEECTTSCEEECSS----HHHHHHHHHHH
T ss_pred HhHHHhcc-Ccceecc-eEEEEEcCCCCccCcCC----HHHHHHHHHHH
Confidence 45655542 4332222 25789999999999965 67899888654
No 36
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=47.12 E-value=2e+02 Score=27.62 Aligned_cols=26 Identities=12% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEecCCCCcccccCCcchhhHHHHHHhhh
Q 027470 45 LIMFSNTGKFHEYISPTTTTKKMFDQYQKS 74 (223)
Q Consensus 45 lIvfs~~gk~~~~~sps~~~~~ii~RY~~~ 74 (223)
+++|.+.|+...|.+ +++||..|-.+
T Consensus 598 ~~l~d~~g~~pk~~~----l~eiL~~F~~~ 623 (803)
T 3qx3_A 598 MVLFDHMGCLKKYET----VQDILKEFFDL 623 (803)
T ss_dssp EEEECTTSCEEEESC----HHHHHHHHHHH
T ss_pred EEEECCCCCcceeCC----HHHHHHHHHHH
Confidence 567888888888865 67899988654
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.45 E-value=1.6e+02 Score=26.33 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 145 TQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 145 ~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
.+++..+++...+.+++..+..++
T Consensus 551 ~~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHH
Confidence 333444444445555555555544
No 38
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=44.56 E-value=69 Score=21.50 Aligned_cols=54 Identities=9% Similarity=0.160 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhhHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 115 DLTFEELRGLEQNMSSSAA-TVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~l~-~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
++|++|+..+-...+..-. .+ ..-..++.+++..+.++...|+.....|...+.
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888887765432211 11 123356677777888887777777777777664
No 39
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=44.08 E-value=28 Score=21.36 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=19.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 027470 83 HYAKMQESYRKLKEINNKLRKDIR 106 (223)
Q Consensus 83 ~~e~lq~el~kLk~~~~~L~~e~r 106 (223)
.|+.+-.+++.|+.+|..|++++.
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 467777888899999999988764
No 40
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=42.65 E-value=49 Score=19.22 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHHHhhHHHHHHHH
Q 027470 114 DDLTFEELRGLEQNMSSSAATVRERK 139 (223)
Q Consensus 114 ~~Ls~~EL~~LE~~Le~~l~~IR~RK 139 (223)
++.|.+||..||..|..--+++.+-|
T Consensus 15 egfspeelaaleselqalekklaalk 40 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999988875544444333
No 41
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.62 E-value=1.4e+02 Score=26.72 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=21.7
Q ss_pred cHHHHHHHHhhhcccceeEEEecCCCCcccccCCcchhhHHHHHHhhhc
Q 027470 27 GIFKKAQELTVLCDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQKSL 75 (223)
Q Consensus 27 GL~KKA~ELsvLCdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~~~ 75 (223)
|+.||..|.. -||.-|.+ +++.+-.||+..-.+.+.|-+|+...
T Consensus 55 ~~~~~~~~~~--~~a~~c~~---~~~~~G~~CPTtC~l~D~L~k~q~~V 98 (464)
T 1m1j_B 55 QAMKKGPIIY--PDAGGCKH---PLDELGVLCPTGCELQTTLLKQEKTV 98 (464)
T ss_dssp --------CC--CCCSCEEC---SSTTTCEEEECTTHHHHHHHHHHHHH
T ss_pred hhhccCcccC--CCCCCccc---cCCCccCcCCCccHHHHHHHHhhhhh
Confidence 5567777666 66666654 34455556643335677787887653
No 42
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=42.49 E-value=1e+02 Score=22.76 Aligned_cols=54 Identities=9% Similarity=0.205 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 115 DLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
++|++++..+-...+.+-..+.. ...++.++++.+.++...|+.....|...+.
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~ 126 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKIA 126 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888877654433222222 2346778888888888888888888877775
No 43
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.91 E-value=1.6e+02 Score=29.28 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.4
Q ss_pred HHhHHHHH
Q 027470 144 KTQTDTYK 151 (223)
Q Consensus 144 ~~qi~~lk 151 (223)
.+|++.+.
T Consensus 1036 ~qq~~~l~ 1043 (1080)
T 2dfs_A 1036 KTEKEELN 1043 (1080)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 44
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=41.57 E-value=1.4 Score=31.58 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=34.0
Q ss_pred eCCCCcchhhhhhccccHHHHHHHHhhhcccceeEEEecCCCCcccc
Q 027470 11 IENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTGKFHEY 57 (223)
Q Consensus 11 Ien~~~R~vTfsKRr~GL~KKA~ELsvLCdaevalIvfs~~gk~~~~ 57 (223)
|.+..-...||-=.-..|.+|.-+||.+| ++.|+|.|+-|-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 45556667777778888899999999887 9999999997765
No 45
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=39.99 E-value=46 Score=22.35 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 027470 119 EELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEE 159 (223)
Q Consensus 119 ~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~e 159 (223)
+||..=-+.|+..+.++-.-+.++ ...|+.|++|...|.+
T Consensus 35 ~EL~~G~~KL~~mi~~l~~E~~~l-~~ni~~lk~K~~EL~~ 74 (78)
T 3iv1_A 35 EDLKKGHQKLEEMVTRLDQEVAEV-DKNIELLKKKDEELSS 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 455555666666666665555544 5677777777666543
No 46
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.82 E-value=42 Score=23.65 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=17.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 145 TQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 145 ~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
++++.+++++..|+.||..|+....
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777777653
No 47
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=39.58 E-value=16 Score=25.77 Aligned_cols=33 Identities=9% Similarity=0.260 Sum_probs=24.1
Q ss_pred cccceeEEEecCCCCcccccCCcchhhHHHHHHhh
Q 027470 39 CDAKVSLIMFSNTGKFHEYISPTTTTKKMFDQYQK 73 (223)
Q Consensus 39 CdaevalIvfs~~gk~~~~~sps~~~~~ii~RY~~ 73 (223)
|+---.++|+ |+|..|...+|. ++.+||+.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e-~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPE-DVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGG-GHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHH-HHHHHHHHHHH
Confidence 4444445555 889888888886 79999999753
No 48
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.38 E-value=2.3e+02 Score=25.94 Aligned_cols=41 Identities=12% Similarity=0.221 Sum_probs=22.9
Q ss_pred HHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 127 NMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 127 ~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
.|+..+..|+.+-+..+ .+|..||.-++.+..+-++|.-.+
T Consensus 114 ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555554 556666666666666666665554
No 49
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=38.22 E-value=1.3e+02 Score=22.83 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027470 117 TFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILL 166 (223)
Q Consensus 117 s~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~ 166 (223)
|..|...||..-...+.+|+.++.+| +++...+.=-+.|.+.|+.+..
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 67888999999899999998777665 2233333334667777777654
No 50
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=37.23 E-value=70 Score=19.46 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 027470 118 FEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNL 157 (223)
Q Consensus 118 ~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l 157 (223)
+++|..||.+.- .-|+++..+.+..++++...+
T Consensus 12 ld~l~~LEkqF~-------~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQFS-------ELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 456667775443 456777777777777775443
No 51
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=36.37 E-value=1e+02 Score=24.00 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=28.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027470 111 EDLDDLTFEELRGLEQNMSSSAATVRERKFHVI 143 (223)
Q Consensus 111 edL~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll 143 (223)
-+|++ |.++|+++=..|...+..+-+-|+-+-
T Consensus 51 Lnid~-se~~L~e~ckELh~~I~~LEeEKYDlE 82 (182)
T 1ytz_I 51 LSLPG-SMQELQELSKKLHAKIDSVDEERYDTE 82 (182)
T ss_dssp CCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 37889 999999999999999999988887764
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.77 E-value=2.2e+02 Score=24.82 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=20.4
Q ss_pred HhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 129 SSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 129 e~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
...+...|.+..+ ..+..+..+..+.++|.++...+.
T Consensus 423 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 459 (487)
T 3oja_A 423 YVEQQSVQNNAIR----DWDMYQHKETQLAEENARLKKLNG 459 (487)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchh----hhhhhhhHHHHHHHHhhhhhhhhh
Confidence 3344444444333 345556666667777777766654
No 53
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.76 E-value=59 Score=18.14 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027470 148 DTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 148 ~~lkkk~~~l~een~~L~~~~ 168 (223)
..|..|+..|..+|..|..++
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHH
Confidence 344445555555555554443
No 54
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=35.03 E-value=28 Score=26.79 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=19.3
Q ss_pred hhhcccceeEEEecCCCCccc-ccC
Q 027470 36 TVLCDAKVSLIMFSNTGKFHE-YIS 59 (223)
Q Consensus 36 svLCdaevalIvfs~~gk~~~-~~s 59 (223)
+.-|++.|-+++|||.-+.|. |..
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIP 140 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIP 140 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEE
T ss_pred CCCcceEEEEEEEcCCcceeeeecc
Confidence 456999999999999888775 554
No 55
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=33.84 E-value=1.6e+02 Score=23.05 Aligned_cols=90 Identities=11% Similarity=0.191 Sum_probs=0.0
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHhh---cCCCCCCC--CHHHHHHHHHHHHhhHHHHHHHHHHHHHH---hHHHH
Q 027470 79 LWSTHYAKMQESYRKLKEINNKLRKDIRQR---MGEDLDDL--TFEELRGLEQNMSSSAATVRERKFHVIKT---QTDTY 150 (223)
Q Consensus 79 ~~~~~~e~lq~el~kLk~~~~~L~~e~r~~---~GedL~~L--s~~EL~~LE~~Le~~l~~IR~RK~~ll~~---qi~~l 150 (223)
.|...+..++..+..++.+...-+..-+.+ +-.+|..+ ...+|..--..|..-+...|.+-...-.+ +|..|
T Consensus 14 ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~L 93 (189)
T 2v71_A 14 YWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVL 93 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027470 151 KKKVRNLEERHGNILLDF 168 (223)
Q Consensus 151 kkk~~~l~een~~L~~~~ 168 (223)
++....|.+.+..|...+
T Consensus 94 q~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
No 56
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=33.36 E-value=1.1e+02 Score=20.75 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027470 148 DTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 148 ~~lkkk~~~l~een~~L~~~~~ 169 (223)
..+..+...|+.+|..|..+++
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777766664
No 57
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.34 E-value=2.4e+02 Score=24.55 Aligned_cols=59 Identities=10% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHHHHhhhcccceeEEEecCCCCccc-ccCCcchhhHHHHHHhhhcCcccccchhhhhHHHHHHHHHH
Q 027470 28 IFKKAQELTVLCDAKVSLIMFSNTGKFHE-YISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEI 97 (223)
Q Consensus 28 L~KKA~ELsvLCdaevalIvfs~~gk~~~-~~sps~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~ 97 (223)
|+-+|+.-|---|+..|+ ...+=. +++-+ .|+.+|++..+.. ...++.|.+.+..+.+-
T Consensus 23 ~vE~~~s~Ck~~d~~~C~-----DeDwG~kCPsGC-rLqg~Ldk~er~~-----~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 23 LVERQQSACKETGWPFCS-----DEDWNTKCPSGC-RMKGLIDEVDQDF-----TSRINKLRDSLFNYQKN 82 (390)
T ss_pred hhhhhccccCCCCCCCCc-----hhhccCCCCccc-hHHHHHHHhhhhH-----HHHHHHHHHHHHHHHHh
Confidence 444555555555666666 122222 22233 6888888876422 23455566555555433
No 58
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=31.73 E-value=50 Score=26.78 Aligned_cols=34 Identities=6% Similarity=0.076 Sum_probs=23.3
Q ss_pred CCCCCCCHHHHHHHHH--HHHhhHHHHHHHHHHHHH
Q 027470 111 EDLDDLTFEELRGLEQ--NMSSSAATVRERKFHVIK 144 (223)
Q Consensus 111 edL~~Ls~~EL~~LE~--~Le~~l~~IR~RK~~ll~ 144 (223)
..+..++++||..|+. .=+.-|..+|.++.+-|.
T Consensus 67 ~~~~~~~~~e~~~~~~d~eDe~fL~~~r~~Rl~el~ 102 (245)
T 1a0r_P 67 RFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMH 102 (245)
T ss_dssp -CCCCSCHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hhhccCChhhhhhcccccccHHHHHHHHHHHHHHHH
Confidence 3466789999998873 234467888887766554
No 59
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=30.97 E-value=1.2e+02 Score=20.20 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 027470 147 TDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 147 i~~lkkk~~~l~een~~L~~~~~ 169 (223)
...+..+...|+.+|..|..++.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888888888775
No 60
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.02 E-value=2.2e+02 Score=22.91 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHhhHHHHHHHHHH
Q 027470 117 TFEELRGLEQNMSSSAATVRERKFH 141 (223)
Q Consensus 117 s~~EL~~LE~~Le~~l~~IR~RK~~ 141 (223)
+.+|+..|...++..-..+...-.+
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~e 112 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANRE 112 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777666665544443
No 61
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=29.99 E-value=1e+02 Score=19.14 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=19.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 141 HVIKTQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 141 ~ll~~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
..+..+...|+.++..|.+++..|...+
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777888888777665
No 62
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=29.66 E-value=57 Score=18.10 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027470 149 TYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 149 ~lkkk~~~l~een~~L~~~~ 168 (223)
.|..|+..|..+|..|..++
T Consensus 4 QLE~kVEeLl~~n~~Le~EV 23 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEV 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 34445555555565555554
No 63
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=29.46 E-value=1.3e+02 Score=23.53 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=19.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 145 TQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 145 ~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
.+|..|+.+...|++||.+|..+.
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566788888889999999998764
No 64
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=29.09 E-value=1.1e+02 Score=19.26 Aligned_cols=30 Identities=7% Similarity=0.124 Sum_probs=21.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 139 KFHVIKTQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 139 K~~ll~~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
+.+-+..+...|+.++..|+.|+..|..-+
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556677777778888888888877655
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.15 E-value=1.8e+02 Score=21.40 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027470 148 DTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 148 ~~lkkk~~~l~een~~L~~~~ 168 (223)
+.++++...+.+++..|..++
T Consensus 106 e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 106 ESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444
No 66
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=27.91 E-value=7.6 Score=20.15 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=8.3
Q ss_pred Ccchhhhhhccc
Q 027470 15 TNRQVTYSKRRN 26 (223)
Q Consensus 15 ~~R~vTfsKRr~ 26 (223)
+.|++.|+||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 467777777763
No 67
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.56 E-value=3.1e+02 Score=24.00 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=36.3
Q ss_pred CCCcccccCCcchhhHHHHHHhhhcCcccccchhhhhHHHHHHHHHHHHHHHHHHHhhcCC
Q 027470 51 TGKFHEYISPTTTTKKMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRMGE 111 (223)
Q Consensus 51 ~gk~~~~~sps~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~e~r~~~Ge 111 (223)
+..+=.||+.--.++++|.+|+.....++ ..++.+-.++..+..+...|.+.+...+.+
T Consensus 12 ~~~~G~~CPT~C~i~d~L~k~e~~V~~~l--~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 12 DERFGSYCPTTCGIADFFNKYRLTTDGEL--LEIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp CGGGCCEEECTTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CcccCCcCCCcccHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445566543378999999998654322 234555556666667767776666555544
No 68
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.33 E-value=69 Score=16.37 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 027470 90 SYRKLKEINNKLRKDI 105 (223)
Q Consensus 90 el~kLk~~~~~L~~e~ 105 (223)
+++.|.+...+|++.+
T Consensus 9 eledlqerlrklrkkl 24 (27)
T 3twe_A 9 ELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444433
No 69
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=26.92 E-value=2.5e+02 Score=22.56 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=26.3
Q ss_pred HHHHHHhhhcCcccccchhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 027470 66 KMFDQYQKSLGVDLWSTHYAKMQESYRKLKEINNKLRKDIRQRM 109 (223)
Q Consensus 66 ~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~e~r~~~ 109 (223)
.-+++|+.-.+.-..+..|..++.+++.++..+..++.++...+
T Consensus 74 ~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 74 AKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554322111345677788888888887777777665444
No 70
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=26.41 E-value=97 Score=17.74 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 145 TQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 145 ~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
+..-..=.|++.|+.+|..|..++.
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455678899999999988763
No 71
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=26.25 E-value=2.1e+02 Score=21.57 Aligned_cols=46 Identities=11% Similarity=0.304 Sum_probs=26.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 123 GLEQNMSSSAATVRERKFHVIK--TQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 123 ~LE~~Le~~l~~IR~RK~~ll~--~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
+|+..|...-+.+-.-+++++. -|...+..|.+.|++||..|...+
T Consensus 86 dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 86 RLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333444333 344667788899999998877544
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.83 E-value=3.5e+02 Score=24.03 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 137 ERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 137 ~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
.++.+...++++..++..+.++++...+...++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~ 554 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLD 554 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHh
Confidence 444555556665555555555566666665553
No 73
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=25.09 E-value=36 Score=23.13 Aligned_cols=28 Identities=7% Similarity=0.137 Sum_probs=21.0
Q ss_pred EEEecCCCCcccccCCcchhhHHHHHHh
Q 027470 45 LIMFSNTGKFHEYISPTTTTKKMFDQYQ 72 (223)
Q Consensus 45 lIvfs~~gk~~~~~sps~~~~~ii~RY~ 72 (223)
++||+.+-...+||+++..++.+++...
T Consensus 19 vvvf~~g~~~~~~C~~C~~~~~~L~~~~ 46 (105)
T 2yan_A 19 VMLFMKGNKQEAKCGFSKQILEILNSTG 46 (105)
T ss_dssp EEEEESBCSSSBCTTHHHHHHHHHHHHT
T ss_pred EEEEEecCCCCCCCccHHHHHHHHHHCC
Confidence 7778864445689999888888888763
No 74
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.61 E-value=98 Score=17.19 Aligned_cols=19 Identities=5% Similarity=-0.071 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027470 149 TYKKKVRNLEERHGNILLD 167 (223)
Q Consensus 149 ~lkkk~~~l~een~~L~~~ 167 (223)
.|..|+..|..+|..|..+
T Consensus 5 QLEdKVEeLl~~~~~Le~E 23 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENE 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHH
Confidence 3334444444444444443
No 75
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=23.41 E-value=73 Score=19.71 Aligned_cols=26 Identities=12% Similarity=0.330 Sum_probs=19.3
Q ss_pred eeEEEecCCCCcccccCCcchhhHHHHHHhh
Q 027470 43 VSLIMFSNTGKFHEYISPTTTTKKMFDQYQK 73 (223)
Q Consensus 43 valIvfs~~gk~~~~~sps~~~~~ii~RY~~ 73 (223)
+-+|+|.. .||.++..+..++++...
T Consensus 4 ~~vv~f~~-----~~C~~C~~~~~~l~~~~~ 29 (85)
T 1fo5_A 4 VKIELFTS-----PMCPHCPAAKRVVEEVAN 29 (85)
T ss_dssp EEEEEEEC-----CCSSCCCTHHHHHHHHHH
T ss_pred eEEEEEeC-----CCCCchHHHHHHHHHHHH
Confidence 56788876 689998877777777544
No 76
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=23.38 E-value=1.6e+02 Score=19.18 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027470 135 VRERKFHVIKTQTDTYKKKVRNLEERHGN 163 (223)
Q Consensus 135 IR~RK~~ll~~qi~~lkkk~~~l~een~~ 163 (223)
|+.-|.+-=.+++.+|+...+.|+++...
T Consensus 36 I~qAk~~~r~DEV~tLe~NLrEL~~ei~~ 64 (69)
T 1z0k_B 36 IRQAKAAGRMDEVRTLQENLRQLQDEYDQ 64 (69)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 33333333345555555555555555443
No 77
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=23.27 E-value=40 Score=23.98 Aligned_cols=29 Identities=7% Similarity=0.056 Sum_probs=23.3
Q ss_pred eEEEecCCCCcccccCCcchhhHHHHHHh
Q 027470 44 SLIMFSNTGKFHEYISPTTTTKKMFDQYQ 72 (223)
Q Consensus 44 alIvfs~~gk~~~~~sps~~~~~ii~RY~ 72 (223)
-|+|||-+-...+||.-|..++++|+.+.
T Consensus 17 ~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~g 45 (121)
T 3gx8_A 17 PVVLFMKGTPEFPKCGFSRATIGLLGNQG 45 (121)
T ss_dssp SEEEEESBCSSSBCTTHHHHHHHHHHHHT
T ss_pred CEEEEEeccCCCCCCccHHHHHHHHHHcC
Confidence 37899886666778888878899999874
No 78
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.74 E-value=1.1e+02 Score=17.20 Aligned_cols=10 Identities=10% Similarity=0.318 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 027470 156 NLEERHGNIL 165 (223)
Q Consensus 156 ~l~een~~L~ 165 (223)
.|+.+-.+|+
T Consensus 19 ~Le~eV~RLk 28 (36)
T 1kd8_B 19 HLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 79
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=22.45 E-value=2.1e+02 Score=20.29 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027470 150 YKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 150 lkkk~~~l~een~~L~~~~ 168 (223)
|..++..|.+|-..|+.-.
T Consensus 88 LE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 88 LERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555556666665555443
No 80
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.21 E-value=73 Score=25.31 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=0.0
Q ss_pred hHHHHHHhhhcC-----cccccchhhhhHHHHHHHHHHHHHHHH----------HHHhhcCCCCCCC
Q 027470 65 KKMFDQYQKSLG-----VDLWSTHYAKMQESYRKLKEINNKLRK----------DIRQRMGEDLDDL 116 (223)
Q Consensus 65 ~~ii~RY~~~~~-----~~~~~~~~e~lq~el~kLk~~~~~L~~----------e~r~~~GedL~~L 116 (223)
+.|.++.+.+-. ...+...++.+++++..|+++|..|+. -|.+++|+.++++
T Consensus 100 k~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~ 166 (209)
T 2wvr_A 100 KEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNF 166 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
No 81
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=22.19 E-value=1.9e+02 Score=19.67 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 89 ESYRKLKEINNKLRKDIRQRMGEDLDDLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 89 ~el~kLk~~~~~L~~e~r~~~GedL~~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
+.+..|..+|..|+.++..+.+. . ..+-..+....|..|++++..+..++..|..++
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~-------------------~----~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQ-------------------G----KSRLGDLYEEEMRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc-------------------c----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777665443321 0 112233456667777777777777777766655
No 82
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=21.33 E-value=1.4e+02 Score=18.05 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=22.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027470 124 LEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGN 163 (223)
Q Consensus 124 LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~ 163 (223)
|+++...--.-|+.-|..-=.+++.+|.+..+.|+.|...
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444457777888877777766543
No 83
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.33 E-value=1.9e+02 Score=19.80 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 027470 115 DLTFEELRGLEQNMSSSAATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDF 168 (223)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~ 168 (223)
++++++...+-..-... ...++.++++.+..+...|+..-..|...+
T Consensus 59 G~~l~~I~~~l~~~~~~-------~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 105 (109)
T 1r8d_A 59 GFRLDEIKEMLDHPNFD-------RKAALQSQKEILMKKKQRMDEMIQTIDRTL 105 (109)
T ss_dssp TCCHHHHHHHHHCTTSC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666665544321111 123556666666666666666555555544
No 84
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=21.20 E-value=1.8e+02 Score=22.74 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 027470 132 AATVRERKFHVIKTQTDTYKKKVRNLEERHGNILLDFE 169 (223)
Q Consensus 132 l~~IR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~~~ 169 (223)
-+.|.++|.+++ +.+++|...|.++...|...+.
T Consensus 10 ~~~i~~Kk~ELi----~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 10 TNLIKQKMDELI----KHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp CCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888886 5888898888888888877764
No 85
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=21.04 E-value=1.3e+02 Score=20.15 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027470 141 HVIKTQTDTYKKKVRNLEERHGNILL 166 (223)
Q Consensus 141 ~ll~~qi~~lkkk~~~l~een~~L~~ 166 (223)
-....+|+.|+++++...|+-..|+.
T Consensus 71 l~ykreie~l~~~ekeime~ls~l~~ 96 (99)
T 3aei_A 71 LVYKREIEKLKKREKEIMEELSKLRA 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35667899999999999988777653
No 86
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=20.76 E-value=72 Score=19.75 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=18.6
Q ss_pred eeEEEecCCCCcccccCCcchhhHHHHHHhh
Q 027470 43 VSLIMFSNTGKFHEYISPTTTTKKMFDQYQK 73 (223)
Q Consensus 43 valIvfs~~gk~~~~~sps~~~~~ii~RY~~ 73 (223)
+-+|+|.. .||.|+..+..++++...
T Consensus 3 ~~vv~f~~-----~~C~~C~~~~~~l~~~~~ 28 (85)
T 1nho_A 3 VNIEVFTS-----PTCPYCPMAIEVVDEAKK 28 (85)
T ss_dssp CCEEEESC-----SSSCCSTTHHHHHHHHHH
T ss_pred EEEEEEEC-----CCCcchHHHHHHHHHHHH
Confidence 45778876 689998777777776543
No 87
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.17 E-value=1.2e+02 Score=18.33 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=15.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 027470 142 VIKTQTDTYKKKVRNLEERHGNI 164 (223)
Q Consensus 142 ll~~qi~~lkkk~~~l~een~~L 164 (223)
-+...+-..+++++.|+++|-=|
T Consensus 18 eler~lrk~kk~iKklEdeNPWL 40 (50)
T 1a92_A 18 ELERDLRKLKKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHhhhccCCch
Confidence 34555666677777788777543
Done!