BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027471
         (223 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YUI|A Chain A, Solution Structure Of The N-Terminal Domain In Human
           Cytokine-Induced Apoptosis Inhibitor Anamorsin
          Length = 182

 Score = 32.7 bits (73), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 154 VVAEVDRILRPDGNLILRDDAETIVEVEDLVKS 186
           ++AE+ RILRP G L L++  ET V+    VK+
Sbjct: 86  ILAEIARILRPGGCLFLKEPVETAVDNNSKVKT 118


>pdb|2LD4|A Chain A, Solution Structure Of The N-Terminal Domain Of Human
           Anamorsin
          Length = 176

 Score = 32.3 bits (72), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 154 VVAEVDRILRPDGNLILRDDAETIVEVEDLVKS 186
           ++AE+ RILRP G L L++  ET V+    VK+
Sbjct: 83  ILAEIARILRPGGCLFLKEPVETAVDNNSKVKT 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,480,627
Number of Sequences: 62578
Number of extensions: 322965
Number of successful extensions: 647
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 644
Number of HSP's gapped (non-prelim): 4
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)