Query 027471
Match_columns 223
No_of_seqs 173 out of 562
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 10:24:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03141 Methyltransf_29: Puta 100.0 1.3E-75 2.8E-80 557.1 16.8 204 1-207 297-506 (506)
2 PF03141 Methyltransf_29: Puta 100.0 1.8E-41 4E-46 323.5 7.7 188 9-209 41-262 (506)
3 PF08241 Methyltransf_11: Meth 99.4 6.6E-14 1.4E-18 100.7 -0.1 89 75-170 1-95 (95)
4 PF02353 CMAS: Mycolic acid cy 99.1 1.6E-11 3.4E-16 110.2 2.5 109 60-171 54-165 (273)
5 PLN02244 tocopherol O-methyltr 99.1 5.2E-11 1.1E-15 109.0 5.8 98 70-172 118-223 (340)
6 PLN02233 ubiquinone biosynthes 99.1 1.5E-10 3.2E-15 102.3 6.5 95 71-173 74-183 (261)
7 PRK00107 gidB 16S rRNA methylt 99.1 4E-10 8.8E-15 96.0 7.7 147 50-208 27-187 (187)
8 PF01209 Ubie_methyltran: ubiE 99.1 3.9E-11 8.4E-16 105.3 1.1 115 50-173 33-154 (233)
9 smart00828 PKS_MT Methyltransf 99.0 1.4E-10 3.1E-15 98.0 3.7 118 72-192 1-140 (224)
10 PRK14103 trans-aconitate 2-met 99.0 3.1E-10 6.6E-15 98.8 5.7 93 70-171 29-125 (255)
11 COG2226 UbiE Methylase involve 99.0 3.1E-10 6.7E-15 100.8 4.7 116 50-174 37-158 (238)
12 PF13489 Methyltransf_23: Meth 99.0 3.1E-10 6.7E-15 89.3 3.7 97 69-175 21-118 (161)
13 PRK10258 biotin biosynthesis p 99.0 1.1E-09 2.4E-14 94.6 7.1 97 69-172 41-140 (251)
14 PTZ00098 phosphoethanolamine N 99.0 2.6E-10 5.5E-15 100.9 2.9 95 71-173 53-157 (263)
15 PRK11207 tellurite resistance 99.0 3E-10 6.6E-15 96.1 2.8 97 72-170 32-132 (197)
16 PRK11036 putative S-adenosyl-L 99.0 4.3E-10 9.4E-15 98.0 3.8 106 60-171 37-148 (255)
17 TIGR02752 MenG_heptapren 2-hep 99.0 6.8E-10 1.5E-14 94.3 4.9 114 50-173 31-152 (231)
18 TIGR00477 tehB tellurite resis 98.9 6.2E-10 1.3E-14 94.1 2.7 96 72-170 32-131 (195)
19 PF12847 Methyltransf_18: Meth 98.9 4E-10 8.8E-15 84.7 1.3 101 72-172 3-111 (112)
20 PRK08287 cobalt-precorrin-6Y C 98.9 9.7E-09 2.1E-13 85.4 8.1 129 54-191 17-151 (187)
21 PLN02396 hexaprenyldihydroxybe 98.9 5.5E-09 1.2E-13 96.1 7.2 95 72-173 133-236 (322)
22 PRK15068 tRNA mo(5)U34 methylt 98.8 1.9E-09 4.1E-14 98.6 3.6 96 71-171 123-225 (322)
23 PF08242 Methyltransf_12: Meth 98.8 2.1E-09 4.5E-14 80.0 2.7 91 75-168 1-99 (99)
24 PRK12335 tellurite resistance 98.8 1.7E-09 3.7E-14 96.4 2.5 117 73-194 123-257 (287)
25 TIGR00537 hemK_rel_arch HemK-r 98.8 1.8E-08 3.9E-13 83.2 7.5 120 72-194 21-163 (179)
26 PRK15451 tRNA cmo(5)U34 methyl 98.8 3.9E-09 8.5E-14 92.1 3.4 102 71-173 57-165 (247)
27 PF05401 NodS: Nodulation prot 98.8 1.5E-09 3.2E-14 94.7 0.5 148 50-206 23-193 (201)
28 PRK11705 cyclopropane fatty ac 98.8 9.6E-09 2.1E-13 96.1 6.0 102 62-172 161-267 (383)
29 TIGR00138 gidB 16S rRNA methyl 98.8 5.9E-09 1.3E-13 87.9 3.9 125 50-188 25-158 (181)
30 TIGR00740 methyltransferase, p 98.8 3.9E-09 8.4E-14 90.9 2.9 102 71-173 54-162 (239)
31 PRK08317 hypothetical protein; 98.8 1.2E-08 2.5E-13 84.9 5.4 95 71-172 20-124 (241)
32 PRK00517 prmA ribosomal protei 98.8 3.6E-08 7.8E-13 86.3 8.7 126 71-207 120-249 (250)
33 PRK00121 trmB tRNA (guanine-N( 98.7 9.5E-09 2.1E-13 87.5 4.8 123 70-192 40-177 (202)
34 TIGR00452 methyltransferase, p 98.7 7.3E-09 1.6E-13 95.1 4.2 97 71-171 122-224 (314)
35 PRK11188 rrmJ 23S rRNA methylt 98.7 1.8E-08 3.8E-13 86.7 6.3 127 72-207 53-206 (209)
36 PLN02336 phosphoethanolamine N 98.7 5.7E-09 1.2E-13 98.4 3.0 94 70-172 266-369 (475)
37 PRK01683 trans-aconitate 2-met 98.7 1.5E-08 3.2E-13 87.7 4.7 92 70-171 31-129 (258)
38 TIGR02072 BioC biotin biosynth 98.7 1.9E-08 4.1E-13 84.0 5.1 93 72-172 36-135 (240)
39 TIGR00406 prmA ribosomal prote 98.7 3E-08 6.5E-13 88.9 6.1 114 72-192 161-279 (288)
40 PRK05785 hypothetical protein; 98.7 2.5E-08 5.3E-13 86.6 5.2 104 50-166 35-141 (226)
41 TIGR00438 rrmJ cell division p 98.7 6.4E-08 1.4E-12 80.7 7.5 129 71-207 33-187 (188)
42 PF13847 Methyltransf_31: Meth 98.7 1.4E-08 3E-13 81.5 2.9 98 71-174 4-112 (152)
43 TIGR03534 RF_mod_PrmC protein- 98.6 5.6E-08 1.2E-12 82.8 6.0 118 72-191 89-236 (251)
44 PRK00377 cbiT cobalt-precorrin 98.6 6.7E-08 1.5E-12 81.5 6.2 144 42-193 12-167 (198)
45 TIGR00091 tRNA (guanine-N(7)-) 98.6 4.6E-08 9.9E-13 82.5 4.5 116 71-186 17-147 (194)
46 PRK11873 arsM arsenite S-adeno 98.6 2.5E-08 5.4E-13 87.3 2.7 97 71-172 78-183 (272)
47 PF03848 TehB: Tellurite resis 98.6 1.7E-08 3.7E-13 87.2 1.4 117 72-193 32-166 (192)
48 TIGR02716 C20_methyl_CrtF C-20 98.6 4.4E-08 9.5E-13 87.6 3.7 103 68-173 147-255 (306)
49 KOG1540 Ubiquinone biosynthesi 98.6 9.2E-08 2E-12 86.9 5.8 118 66-187 96-230 (296)
50 PRK09489 rsmC 16S ribosomal RN 98.5 1.5E-07 3.2E-12 87.2 6.8 131 73-208 199-337 (342)
51 PLN02336 phosphoethanolamine N 98.5 1.3E-07 2.7E-12 89.3 5.9 97 71-172 38-142 (475)
52 PRK11088 rrmA 23S rRNA methylt 98.5 7.9E-08 1.7E-12 84.9 3.8 91 70-175 85-184 (272)
53 TIGR02469 CbiT precorrin-6Y C5 98.5 1.2E-07 2.7E-12 71.6 4.3 100 64-171 15-121 (124)
54 PRK14967 putative methyltransf 98.5 5.5E-07 1.2E-11 77.3 8.6 153 25-192 4-180 (223)
55 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 1.8E-07 3.8E-12 77.7 4.9 93 70-172 39-143 (223)
56 PRK04266 fibrillarin; Provisio 98.5 6.9E-07 1.5E-11 78.3 8.8 102 63-171 67-175 (226)
57 PRK07402 precorrin-6B methylas 98.5 3.8E-07 8.2E-12 76.5 6.8 127 54-189 26-160 (196)
58 PLN02490 MPBQ/MSBQ methyltrans 98.5 2E-07 4.2E-12 86.7 5.5 115 71-192 114-252 (340)
59 PRK06922 hypothetical protein; 98.5 6.9E-08 1.5E-12 96.6 2.6 103 71-173 419-538 (677)
60 TIGR01983 UbiG ubiquinone bios 98.5 9.4E-08 2E-12 80.5 2.9 100 71-173 46-150 (224)
61 PF01728 FtsJ: FtsJ-like methy 98.5 6.2E-07 1.3E-11 74.1 7.6 140 66-207 19-180 (181)
62 PTZ00146 fibrillarin; Provisio 98.4 9.4E-07 2E-11 81.0 9.3 103 62-171 126-236 (293)
63 PRK05134 bifunctional 3-demeth 98.4 1.2E-07 2.5E-12 80.9 2.8 98 71-173 49-152 (233)
64 COG2230 Cfa Cyclopropane fatty 98.4 1.4E-07 3E-12 86.1 3.3 103 62-171 66-175 (283)
65 PRK14968 putative methyltransf 98.4 6.5E-07 1.4E-11 72.8 6.9 119 71-192 24-169 (188)
66 PRK13944 protein-L-isoaspartat 98.4 2.5E-07 5.3E-12 78.8 4.3 100 61-172 65-173 (205)
67 PRK09328 N5-glutamine S-adenos 98.4 9.2E-07 2E-11 76.8 7.4 133 71-207 109-275 (275)
68 PRK06202 hypothetical protein; 98.4 1.2E-07 2.7E-12 81.3 1.9 97 69-173 59-167 (232)
69 PRK13942 protein-L-isoaspartat 98.4 2.2E-07 4.7E-12 79.8 3.1 97 62-171 70-175 (212)
70 TIGR00080 pimt protein-L-isoas 98.4 3.1E-07 6.7E-12 78.4 4.0 100 60-171 69-176 (215)
71 TIGR02021 BchM-ChlM magnesium 98.4 9.4E-07 2E-11 75.1 6.6 115 50-173 39-159 (219)
72 TIGR03533 L3_gln_methyl protei 98.4 8.5E-07 1.8E-11 79.7 6.5 123 71-196 122-274 (284)
73 PF13649 Methyltransf_25: Meth 98.3 8.3E-08 1.8E-12 72.1 -0.5 88 74-166 1-101 (101)
74 PRK15001 SAM-dependent 23S rib 98.3 8.1E-07 1.8E-11 83.7 6.0 129 72-207 230-373 (378)
75 PRK07580 Mg-protoporphyrin IX 98.3 5.3E-07 1.1E-11 76.1 4.2 101 71-172 64-166 (230)
76 PRK00216 ubiE ubiquinone/menaq 98.3 3.6E-07 7.7E-12 76.7 3.1 97 72-172 53-158 (239)
77 PRK14121 tRNA (guanine-N(7)-)- 98.3 8.8E-07 1.9E-11 84.0 5.3 119 71-191 123-256 (390)
78 TIGR00536 hemK_fam HemK family 98.3 2.2E-06 4.8E-11 76.5 7.5 133 72-207 116-282 (284)
79 PRK01544 bifunctional N5-gluta 98.3 1.5E-06 3.2E-11 84.2 6.5 134 71-207 139-306 (506)
80 PF05175 MTS: Methyltransferas 98.3 2.2E-06 4.7E-11 70.9 6.6 139 33-185 7-155 (170)
81 cd02440 AdoMet_MTases S-adenos 98.3 5.6E-07 1.2E-11 63.0 2.6 96 73-171 1-103 (107)
82 PF05148 Methyltransf_8: Hypot 98.3 4.3E-06 9.3E-11 73.9 8.5 132 60-209 63-199 (219)
83 TIGR02081 metW methionine bios 98.2 9.5E-07 2.1E-11 74.0 4.0 85 73-164 16-104 (194)
84 PRK11805 N5-glutamine S-adenos 98.2 2E-06 4.4E-11 78.3 6.1 131 72-207 135-296 (307)
85 smart00138 MeTrc Methyltransfe 98.2 8.9E-07 1.9E-11 78.8 3.5 125 42-174 70-244 (264)
86 TIGR03704 PrmC_rel_meth putati 98.2 2.2E-06 4.8E-11 75.7 5.9 146 47-198 68-242 (251)
87 PRK14966 unknown domain/N5-glu 98.2 3.6E-06 7.7E-11 80.7 7.6 134 73-208 254-419 (423)
88 TIGR03840 TMPT_Se_Te thiopurin 98.2 1.5E-06 3.2E-11 75.5 4.4 95 72-170 36-150 (213)
89 PF07021 MetW: Methionine bios 98.2 1.6E-06 3.4E-11 75.4 4.5 91 72-171 15-108 (193)
90 PF00891 Methyltransf_2: O-met 98.2 9E-07 1.9E-11 76.2 2.8 98 66-173 96-200 (241)
91 PRK13255 thiopurine S-methyltr 98.1 4.6E-06 9.9E-11 72.6 6.2 95 72-170 39-153 (218)
92 TIGR03587 Pse_Me-ase pseudamin 98.1 3.2E-06 6.9E-11 72.6 4.5 92 71-172 44-142 (204)
93 COG4976 Predicted methyltransf 98.1 1E-06 2.2E-11 79.4 1.3 120 66-192 121-261 (287)
94 KOG3010 Methyltransferase [Gen 98.1 1.8E-06 4E-11 77.7 2.9 113 69-191 32-159 (261)
95 PF02390 Methyltransf_4: Putat 98.1 1.8E-06 3.9E-11 73.9 2.3 112 73-187 20-149 (195)
96 PF06325 PrmA: Ribosomal prote 98.1 5.6E-06 1.2E-10 75.7 5.5 128 72-208 163-295 (295)
97 PRK00312 pcm protein-L-isoaspa 98.0 4.5E-06 9.7E-11 70.7 3.5 98 61-171 71-174 (212)
98 COG2264 PrmA Ribosomal protein 98.0 2.4E-05 5.2E-10 72.1 8.1 129 70-205 162-296 (300)
99 PRK04457 spermidine synthase; 97.9 4.7E-05 1E-09 67.8 9.0 135 69-208 65-217 (262)
100 COG2227 UbiG 2-polyprenyl-3-me 97.9 5.4E-06 1.2E-10 74.3 3.1 96 72-175 61-164 (243)
101 COG2890 HemK Methylase of poly 97.9 4.8E-05 1.1E-09 68.7 9.2 155 46-207 93-276 (280)
102 TIGR01177 conserved hypothetic 97.9 1.4E-05 2.9E-10 72.9 4.0 117 71-189 183-309 (329)
103 PRK14902 16S rRNA methyltransf 97.9 2.1E-05 4.6E-10 74.4 5.5 117 71-187 251-398 (444)
104 TIGR03438 probable methyltrans 97.8 1E-05 2.2E-10 73.0 2.7 94 72-171 65-176 (301)
105 KOG3045 Predicted RNA methylas 97.8 0.00011 2.3E-09 67.5 9.2 108 71-199 181-294 (325)
106 PF08003 Methyltransf_9: Prote 97.8 3.8E-05 8.3E-10 71.2 5.8 97 70-171 115-218 (315)
107 TIGR00563 rsmB ribosomal RNA s 97.8 3.7E-05 8.1E-10 72.5 5.6 119 64-186 234-386 (426)
108 PF13659 Methyltransf_26: Meth 97.7 7E-06 1.5E-10 62.1 -0.3 100 72-171 2-114 (117)
109 PRK14901 16S rRNA methyltransf 97.7 4.6E-05 1E-09 72.1 5.1 134 72-206 254-429 (434)
110 PRK10901 16S rRNA methyltransf 97.7 5.3E-05 1.1E-09 71.6 5.4 120 64-186 240-390 (427)
111 PRK14904 16S rRNA methyltransf 97.7 7.5E-05 1.6E-09 70.9 6.4 115 71-186 251-395 (445)
112 TIGR00446 nop2p NOL1/NOP2/sun 97.7 4.3E-05 9.2E-10 67.8 4.4 115 72-186 73-217 (264)
113 COG2813 RsmC 16S RNA G1207 met 97.7 0.00015 3.4E-09 66.8 7.8 127 73-208 161-300 (300)
114 PRK01544 bifunctional N5-gluta 97.6 6.3E-05 1.4E-09 73.0 5.0 111 70-183 347-474 (506)
115 PRK13943 protein-L-isoaspartat 97.6 5.1E-05 1.1E-09 70.1 4.1 98 62-171 74-179 (322)
116 PRK14903 16S rRNA methyltransf 97.6 5.7E-05 1.2E-09 71.8 4.2 119 64-185 233-383 (431)
117 KOG1541 Predicted protein carb 97.6 9.7E-05 2.1E-09 66.5 5.0 126 61-190 41-178 (270)
118 PLN02781 Probable caffeoyl-CoA 97.6 0.00012 2.5E-09 64.2 5.2 97 69-171 67-177 (234)
119 COG4123 Predicted O-methyltran 97.5 0.00018 3.9E-09 64.8 5.8 123 70-192 44-190 (248)
120 COG0500 SmtA SAM-dependent met 97.5 0.00031 6.7E-09 49.1 5.6 93 74-174 52-157 (257)
121 KOG4300 Predicted methyltransf 97.4 6.8E-05 1.5E-09 66.9 2.2 98 71-174 77-184 (252)
122 PRK00811 spermidine synthase; 97.4 0.00017 3.7E-09 64.8 4.8 101 69-171 75-190 (283)
123 COG0220 Predicted S-adenosylme 97.4 0.00015 3.3E-09 64.2 4.1 111 72-184 50-178 (227)
124 PF05219 DREV: DREV methyltran 97.4 0.00019 4.2E-09 65.2 4.3 90 70-171 94-187 (265)
125 TIGR00417 speE spermidine synt 97.3 0.0011 2.5E-08 58.8 8.6 135 69-207 71-232 (270)
126 PLN02232 ubiquinone biosynthes 97.3 0.00013 2.8E-09 60.0 2.3 54 118-174 30-83 (160)
127 PRK11783 rlmL 23S rRNA m(2)G24 97.3 0.00014 3.1E-09 73.1 2.9 123 72-194 540-678 (702)
128 PLN03075 nicotianamine synthas 97.3 0.00025 5.4E-09 65.2 3.7 133 70-209 123-276 (296)
129 PF03291 Pox_MCEL: mRNA cappin 97.2 0.00047 1E-08 64.0 5.2 130 50-182 42-198 (331)
130 PLN02585 magnesium protoporphy 97.2 0.00032 7E-09 64.6 4.0 92 72-169 146-247 (315)
131 PRK13168 rumA 23S rRNA m(5)U19 97.1 0.00058 1.3E-08 64.8 4.9 113 72-192 299-420 (443)
132 KOG2361 Predicted methyltransf 97.1 0.00031 6.7E-09 63.6 2.4 101 73-175 74-186 (264)
133 KOG2904 Predicted methyltransf 97.0 0.0032 7E-08 58.3 8.6 158 47-207 128-327 (328)
134 PF05891 Methyltransf_PK: AdoM 97.0 0.0007 1.5E-08 60.0 4.1 122 69-194 54-199 (218)
135 PLN02476 O-methyltransferase 97.0 0.0011 2.4E-08 60.5 5.3 132 69-208 117-278 (278)
136 KOG1270 Methyltransferases [Co 97.0 0.00025 5.4E-09 64.8 1.0 103 71-176 90-199 (282)
137 PF01135 PCMT: Protein-L-isoas 97.0 0.0002 4.3E-09 62.4 0.1 99 60-171 64-171 (209)
138 PF06080 DUF938: Protein of un 96.9 0.0032 6.9E-08 55.3 7.4 132 73-207 28-204 (204)
139 PRK01581 speE spermidine synth 96.9 0.004 8.7E-08 59.2 8.6 141 68-210 148-316 (374)
140 TIGR00478 tly hemolysin TlyA f 96.9 0.00058 1.2E-08 60.4 2.7 110 70-192 75-213 (228)
141 PF01596 Methyltransf_3: O-met 96.8 0.0009 2E-08 58.1 3.2 132 69-208 44-205 (205)
142 PF10294 Methyltransf_16: Puta 96.8 0.0008 1.7E-08 56.2 2.8 119 48-172 17-156 (173)
143 PLN02366 spermidine synthase 96.8 0.0011 2.5E-08 60.8 3.9 101 69-171 90-205 (308)
144 COG4122 Predicted O-methyltran 96.8 0.0015 3.2E-08 57.8 4.2 142 60-208 50-218 (219)
145 TIGR00479 rumA 23S rRNA (uraci 96.7 0.0036 7.9E-08 58.9 6.6 114 72-192 294-416 (431)
146 KOG1271 Methyltransferases [Ge 96.7 0.0011 2.3E-08 58.5 2.4 114 73-187 70-196 (227)
147 PHA03411 putative methyltransf 96.6 0.002 4.4E-08 59.0 4.1 94 72-171 66-182 (279)
148 COG2242 CobL Precorrin-6B meth 96.6 0.014 3E-07 50.8 8.8 140 42-192 6-157 (187)
149 PRK15128 23S rRNA m(5)C1962 me 96.6 0.0034 7.3E-08 59.6 5.3 123 71-193 221-366 (396)
150 PRK03612 spermidine synthase; 96.6 0.0049 1.1E-07 60.1 6.5 120 70-191 297-439 (521)
151 PF02527 GidB: rRNA small subu 96.4 0.013 2.8E-07 50.2 7.3 134 47-192 26-171 (184)
152 smart00650 rADc Ribosomal RNA 96.4 0.0025 5.4E-08 52.3 2.6 91 71-172 14-113 (169)
153 PHA03412 putative methyltransf 96.1 0.01 2.2E-07 53.5 5.3 92 72-170 51-160 (241)
154 KOG1975 mRNA cap methyltransfe 96.0 0.0053 1.1E-07 58.0 3.3 113 69-183 116-250 (389)
155 COG4106 Tam Trans-aconitate me 95.8 0.017 3.7E-07 52.1 5.4 136 66-212 26-191 (257)
156 PF12147 Methyltransf_20: Puta 95.8 0.0085 1.9E-07 55.7 3.6 125 69-193 134-276 (311)
157 PRK03522 rumB 23S rRNA methylu 95.8 0.0039 8.5E-08 56.6 1.3 111 72-192 175-292 (315)
158 COG2521 Predicted archaeal met 95.7 0.0089 1.9E-07 54.5 3.2 152 47-208 115-287 (287)
159 PRK11933 yebU rRNA (cytosine-C 95.7 0.022 4.8E-07 55.4 6.1 101 70-171 113-241 (470)
160 PF07942 N2227: N2227-like pro 95.6 0.059 1.3E-06 49.2 8.0 43 151-193 181-239 (270)
161 KOG1269 SAM-dependent methyltr 95.5 0.0058 1.3E-07 57.7 1.3 96 73-171 113-214 (364)
162 PRK04148 hypothetical protein; 95.5 0.028 6.1E-07 46.4 5.1 48 70-121 16-66 (134)
163 COG2518 Pcm Protein-L-isoaspar 95.4 0.013 2.9E-07 51.7 3.1 100 60-171 64-168 (209)
164 PF05185 PRMT5: PRMT5 arginine 95.4 0.011 2.4E-07 57.1 2.7 142 20-171 134-296 (448)
165 PRK13256 thiopurine S-methyltr 95.1 0.047 1E-06 48.4 5.8 106 60-171 35-162 (226)
166 PLN02589 caffeoyl-CoA O-methyl 94.9 0.014 3E-07 52.2 1.8 98 68-171 77-189 (247)
167 PLN02672 methionine S-methyltr 94.8 0.054 1.2E-06 57.7 6.2 40 152-191 258-298 (1082)
168 COG0293 FtsJ 23S rRNA methylas 94.5 0.071 1.5E-06 47.0 5.3 131 71-207 46-200 (205)
169 PRK00536 speE spermidine synth 94.5 0.11 2.4E-06 47.0 6.6 96 66-173 68-172 (262)
170 KOG3115 Methyltransferase-like 94.4 0.047 1E-06 49.0 4.0 22 153-174 164-185 (249)
171 TIGR02085 meth_trns_rumB 23S r 94.4 0.034 7.3E-07 52.0 3.2 108 72-192 235-352 (374)
172 PF05724 TPMT: Thiopurine S-me 94.3 0.063 1.4E-06 47.0 4.5 126 60-193 29-187 (218)
173 PRK10909 rsmD 16S rRNA m(2)G96 94.0 0.028 6.2E-07 48.5 1.7 120 45-174 33-161 (199)
174 PF13578 Methyltransf_24: Meth 93.6 0.023 4.9E-07 42.8 0.3 94 75-172 1-105 (106)
175 PRK00274 ksgA 16S ribosomal RN 93.4 0.11 2.3E-06 46.4 4.4 38 62-101 36-75 (272)
176 COG2519 GCD14 tRNA(1-methylade 93.4 0.26 5.5E-06 45.0 6.8 115 64-190 90-214 (256)
177 PLN02823 spermine synthase 93.1 0.13 2.7E-06 48.1 4.4 101 69-171 102-219 (336)
178 TIGR02143 trmA_only tRNA (urac 92.8 0.11 2.4E-06 48.3 3.7 110 73-192 200-330 (353)
179 KOG2940 Predicted methyltransf 92.4 0.14 3E-06 47.1 3.6 97 70-171 72-173 (325)
180 COG4627 Uncharacterized protei 92.1 0.11 2.4E-06 44.8 2.5 41 130-171 45-85 (185)
181 PF11968 DUF3321: Putative met 91.5 1 2.2E-05 40.2 8.0 126 72-208 53-193 (219)
182 PF08704 GCD14: tRNA methyltra 91.5 0.15 3.1E-06 45.9 2.7 119 63-191 35-166 (247)
183 PRK11760 putative 23S rRNA C24 91.4 2 4.3E-05 41.0 10.2 90 70-171 211-304 (357)
184 TIGR00755 ksgA dimethyladenosi 91.0 0.22 4.7E-06 43.7 3.3 30 70-99 29-60 (253)
185 PRK10611 chemotaxis methyltran 90.8 0.16 3.4E-06 46.6 2.3 42 131-173 222-263 (287)
186 COG0357 GidB Predicted S-adeno 90.7 1.3 2.9E-05 39.1 8.0 137 47-195 45-194 (215)
187 PRK04338 N(2),N(2)-dimethylgua 90.6 0.14 3E-06 48.5 1.7 91 72-171 59-157 (382)
188 PRK13699 putative methylase; P 90.4 0.73 1.6E-05 40.5 6.0 58 151-208 51-121 (227)
189 PF01739 CheR: CheR methyltran 90.3 0.13 2.7E-06 44.6 1.1 121 45-173 5-176 (196)
190 COG1189 Predicted rRNA methyla 90.3 1.1 2.5E-05 40.6 7.2 112 70-192 79-220 (245)
191 PRK14896 ksgA 16S ribosomal RN 89.9 0.39 8.6E-06 42.4 4.0 30 71-100 30-61 (258)
192 KOG3178 Hydroxyindole-O-methyl 89.9 0.84 1.8E-05 43.2 6.2 97 70-173 177-276 (342)
193 PF01269 Fibrillarin: Fibrilla 89.6 0.76 1.6E-05 41.3 5.5 98 69-171 72-177 (229)
194 KOG1499 Protein arginine N-met 88.9 0.25 5.4E-06 46.8 2.0 106 60-171 48-166 (346)
195 KOG1663 O-methyltransferase [S 88.7 0.29 6.3E-06 44.1 2.3 96 70-171 73-182 (237)
196 KOG2899 Predicted methyltransf 88.2 0.76 1.6E-05 42.3 4.6 40 131-171 165-208 (288)
197 COG0421 SpeE Spermidine syntha 87.8 1.8 3.9E-05 39.7 6.8 138 66-207 72-236 (282)
198 COG2263 Predicted RNA methylas 87.1 0.43 9.3E-06 42.1 2.2 75 70-146 45-122 (198)
199 PTZ00338 dimethyladenosine tra 86.8 0.24 5.3E-06 45.2 0.6 30 72-101 38-69 (294)
200 PF02475 Met_10: Met-10+ like- 86.6 0.14 3E-06 44.6 -1.1 107 45-168 84-198 (200)
201 KOG3987 Uncharacterized conser 86.2 0.57 1.2E-05 42.5 2.6 79 71-171 113-206 (288)
202 PF01564 Spermine_synth: Sperm 84.0 2.2 4.9E-05 37.8 5.3 139 69-209 75-239 (246)
203 PF03269 DUF268: Caenorhabditi 83.1 1.1 2.3E-05 39.0 2.7 47 127-173 58-112 (177)
204 COG1889 NOP1 Fibrillarin-like 82.6 4.6 0.0001 36.3 6.7 130 37-171 39-179 (231)
205 PF09243 Rsm22: Mitochondrial 81.5 1.2 2.7E-05 40.0 2.7 118 70-191 33-163 (274)
206 PF01555 N6_N4_Mtase: DNA meth 81.5 0.84 1.8E-05 37.5 1.5 21 151-171 35-55 (231)
207 KOG3191 Predicted N6-DNA-methy 80.8 14 0.00029 32.9 8.8 124 71-194 44-191 (209)
208 KOG1331 Predicted methyltransf 79.8 1.2 2.6E-05 41.4 2.1 47 125-171 94-142 (293)
209 PF01170 UPF0020: Putative RNA 78.3 0.98 2.1E-05 38.0 1.0 119 71-193 29-168 (179)
210 PRK00050 16S rRNA m(4)C1402 me 77.8 2.1 4.5E-05 39.6 3.0 29 61-91 12-40 (296)
211 TIGR01444 fkbM_fam methyltrans 77.5 1.3 2.7E-05 34.6 1.3 19 73-91 1-19 (143)
212 COG1092 Predicted SAM-dependen 76.8 2.1 4.6E-05 41.1 2.9 125 45-173 195-337 (393)
213 KOG1661 Protein-L-isoaspartate 76.6 0.85 1.8E-05 41.1 0.1 90 72-171 84-192 (237)
214 KOG4589 Cell division protein 75.7 8.9 0.00019 34.4 6.2 131 71-207 70-225 (232)
215 TIGR00095 RNA methyltransferas 73.9 2.2 4.8E-05 36.2 2.0 22 72-93 51-72 (189)
216 KOG3201 Uncharacterized conser 72.4 2.3 5E-05 37.2 1.8 114 70-191 29-161 (201)
217 PRK11524 putative methyltransf 71.8 5.2 0.00011 35.9 3.9 30 151-180 59-88 (284)
218 PRK11727 23S rRNA mA1618 methy 71.7 3.5 7.6E-05 38.4 2.9 34 67-100 111-148 (321)
219 PF06859 Bin3: Bicoid-interact 70.3 4.4 9.6E-05 32.7 2.8 43 148-190 20-70 (110)
220 PF01206 TusA: Sulfurtransfera 69.6 35 0.00077 23.8 7.2 60 147-207 8-70 (70)
221 PRK05031 tRNA (uracil-5-)-meth 69.6 3.4 7.3E-05 38.6 2.3 109 73-192 209-339 (362)
222 COG2265 TrmA SAM-dependent met 68.7 4.4 9.5E-05 39.3 3.0 105 68-179 291-403 (432)
223 PF14740 DUF4471: Domain of un 66.3 6 0.00013 36.6 3.2 54 129-191 219-284 (289)
224 cd08254 hydroxyacyl_CoA_DH 6-h 66.3 11 0.00023 32.9 4.7 88 72-171 167-262 (338)
225 KOG1709 Guanidinoacetate methy 66.2 3.2 6.8E-05 37.9 1.3 95 69-171 100-205 (271)
226 KOG1122 tRNA and rRNA cytosine 65.1 18 0.00038 35.7 6.2 108 63-171 234-370 (460)
227 PF13679 Methyltransf_32: Meth 64.6 8.3 0.00018 30.8 3.4 23 68-90 23-45 (141)
228 PF05958 tRNA_U5-meth_tr: tRNA 63.3 8 0.00017 36.0 3.5 29 73-101 199-229 (352)
229 PF01234 NNMT_PNMT_TEMT: NNMT/ 61.5 2.9 6.3E-05 37.9 0.2 42 130-171 156-198 (256)
230 KOG2793 Putative N2,N2-dimethy 59.6 10 0.00022 34.4 3.3 106 60-171 77-198 (248)
231 TIGR00308 TRM1 tRNA(guanine-26 57.7 7.5 0.00016 36.9 2.3 91 73-171 47-146 (374)
232 PF08123 DOT1: Histone methyla 56.2 21 0.00046 31.1 4.7 26 61-88 35-62 (205)
233 PF01189 Nol1_Nop2_Fmu: NOL1/N 56.1 1.7 3.7E-05 39.3 -2.2 35 153-187 196-238 (283)
234 COG1352 CheR Methylase of chem 55.2 8 0.00017 35.3 2.0 47 129-176 199-245 (268)
235 COG0144 Sun tRNA and rRNA cyto 54.9 20 0.00044 33.6 4.6 19 153-171 269-287 (355)
236 PF00398 RrnaAD: Ribosomal RNA 53.9 7.5 0.00016 34.4 1.6 47 45-98 12-60 (262)
237 TIGR02987 met_A_Alw26 type II 51.1 7.1 0.00015 38.0 1.0 22 70-91 31-52 (524)
238 COG4798 Predicted methyltransf 48.7 42 0.0009 30.4 5.3 105 65-173 45-167 (238)
239 PF11899 DUF3419: Protein of u 48.2 11 0.00024 35.9 1.8 41 131-172 294-334 (380)
240 TIGR03439 methyl_EasF probable 47.0 19 0.00041 33.6 3.1 21 151-171 175-196 (319)
241 COG0863 DNA modification methy 45.4 63 0.0014 28.1 6.0 42 151-192 78-119 (302)
242 PF09445 Methyltransf_15: RNA 44.1 14 0.0003 31.4 1.6 30 72-101 1-32 (163)
243 cd00291 SirA_YedF_YeeD SirA, Y 43.9 1E+02 0.0023 21.1 7.4 51 148-199 8-61 (69)
244 PF14314 Methyltrans_Mon: Viru 42.2 85 0.0018 32.6 7.1 140 70-212 322-505 (675)
245 KOG1596 Fibrillarin and relate 42.1 49 0.0011 30.9 4.8 99 66-171 154-260 (317)
246 PF02384 N6_Mtase: N-6 DNA Met 42.0 15 0.00033 32.7 1.7 24 67-90 43-66 (311)
247 KOG1150 Predicted molecular ch 40.3 16 0.00034 33.0 1.4 34 156-189 38-79 (250)
248 PF03602 Cons_hypoth95: Conser 39.3 4.3 9.3E-05 34.5 -2.2 99 71-172 43-153 (183)
249 PRK15001 SAM-dependent 23S rib 39.2 26 0.00057 33.4 2.8 107 73-184 47-159 (378)
250 COG5459 Predicted rRNA methyla 39.1 23 0.00049 34.7 2.4 43 131-173 184-226 (484)
251 TIGR01743 purR_Bsub pur operon 39.0 26 0.00057 32.1 2.7 34 153-187 87-124 (268)
252 COG0030 KsgA Dimethyladenosine 38.6 47 0.001 30.3 4.3 48 44-98 11-60 (259)
253 PF06962 rRNA_methylase: Putat 37.7 64 0.0014 26.9 4.6 55 153-207 73-140 (140)
254 COG3963 Phospholipid N-methylt 36.9 38 0.00082 29.9 3.2 53 42-94 6-72 (194)
255 PHA01634 hypothetical protein 35.4 34 0.00074 29.0 2.6 43 46-93 9-51 (156)
256 COG1608 Predicted archaeal kin 35.0 32 0.00068 31.6 2.5 74 84-172 86-170 (252)
257 cd02173 ECT CTP:phosphoethanol 34.2 14 0.00029 30.7 0.0 13 129-141 7-19 (152)
258 PRK00299 sulfur transfer prote 33.3 2E+02 0.0043 21.2 7.8 60 148-208 18-80 (81)
259 KOG1500 Protein arginine N-met 32.6 39 0.00084 33.0 2.8 114 70-191 177-308 (517)
260 cd08230 glucose_DH Glucose deh 32.6 1.1E+02 0.0023 27.5 5.5 89 72-171 174-268 (355)
261 cd03422 YedF YedF is a bacteri 31.5 1.9E+02 0.0041 20.5 7.7 60 147-207 7-69 (69)
262 KOG2530 Members of tubulin/Fts 31.4 64 0.0014 32.1 4.1 99 42-143 178-299 (483)
263 cd08261 Zn_ADH7 Alcohol dehydr 30.9 72 0.0016 28.1 4.1 93 66-171 157-257 (337)
264 PF10354 DUF2431: Domain of un 30.5 61 0.0013 27.2 3.4 45 147-191 100-147 (166)
265 KOG1099 SAM-dependent methyltr 28.3 60 0.0013 30.1 3.1 141 49-207 18-204 (294)
266 PF14881 Tubulin_3: Tubulin do 27.1 86 0.0019 26.8 3.8 31 70-100 76-115 (180)
267 KOG2198 tRNA cytosine-5-methyl 25.0 87 0.0019 30.3 3.7 40 153-192 277-324 (375)
268 KOG1534 Putative transcription 24.8 44 0.00095 30.7 1.6 60 78-171 13-78 (273)
269 COG1683 Uncharacterized conser 24.6 32 0.00069 29.5 0.6 21 78-98 127-147 (156)
270 PF04932 Wzy_C: O-Antigen liga 24.5 19 0.00042 28.2 -0.6 43 77-119 113-160 (163)
271 KOG2539 Mitochondrial/chloropl 23.7 78 0.0017 31.6 3.2 99 71-173 201-316 (491)
272 KOG2187 tRNA uracil-5-methyltr 23.4 71 0.0015 32.3 2.9 73 40-115 355-430 (534)
273 PF02636 Methyltransf_28: Puta 22.8 46 0.001 29.1 1.4 21 70-90 18-38 (252)
274 PLN02668 indole-3-acetate carb 22.4 39 0.00085 32.5 0.9 15 129-143 158-173 (386)
275 PF13524 Glyco_trans_1_2: Glyc 22.3 70 0.0015 22.9 2.0 46 131-184 14-60 (92)
276 TIGR02822 adh_fam_2 zinc-bindi 22.1 1.9E+02 0.0041 25.9 5.2 85 72-171 167-253 (329)
277 cd02174 CCT CTP:phosphocholine 21.1 31 0.00067 28.6 -0.1 13 129-141 7-19 (150)
278 COG0742 N6-adenine-specific me 20.9 69 0.0015 28.0 2.0 119 55-175 28-157 (187)
279 PF01861 DUF43: Protein of unk 20.6 1.3E+02 0.0027 27.5 3.7 119 70-192 44-174 (243)
280 PF04816 DUF633: Family of unk 20.3 2.1E+02 0.0046 24.8 5.0 132 74-211 1-143 (205)
281 PF12668 DUF3791: Protein of u 20.2 57 0.0012 22.9 1.2 26 131-166 37-62 (62)
No 1
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.3e-75 Score=557.14 Aligned_cols=204 Identities=51% Similarity=0.949 Sum_probs=193.9
Q ss_pred CccCCCCCCCCCCcCCCCCCCCCCCCCcccccccCccCCCCccchhHhhhhHHHHHhhhhhhccC--CCCCCceEEEeeC
Q 027471 1 MHKVPVDKSKRGSRWPLQWPLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMG--INWSFVRNVMDMR 78 (223)
Q Consensus 1 ~~~~p~~~~~~g~~~p~~WP~rl~~~p~rl~~~~g~~~~~~~~~f~~D~~~W~~~v~~~Y~~~l~--i~~~~iRnvLDmg 78 (223)
||++|++++..+.+++++||+||+++|+||++. .+.+.++|.|++|+++|+++|++ |++.++ ++++++|||||||
T Consensus 297 it~~p~~~~~~~~~~~~~WP~RL~~~P~rl~~~--~~~g~~~e~F~~Dt~~Wk~~V~~-Y~~l~~~~i~~~~iRNVMDMn 373 (506)
T PF03141_consen 297 ITPLPEVSSEIAGGWLPKWPERLNAVPPRLSSG--SIPGISPEEFKEDTKHWKKRVSH-YKKLLGLAIKWGRIRNVMDMN 373 (506)
T ss_pred cCcCCcccccccccCCCCChhhhccCchhhhcC--CcCCCCHHHHHHHHHHHHHHHHH-HHHhhcccccccceeeeeeec
Confidence 688999988889999999999999999999971 13347899999999999999998 887776 8999999999999
Q ss_pred CchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccccccchhHHHHhh
Q 027471 79 AVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEV 158 (223)
Q Consensus 79 aG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~ 158 (223)
||||||||||.+++||||||+|..+++||++||||||||+||||||+||||||||||||+++|||.+++||++++||+||
T Consensus 374 Ag~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEm 453 (506)
T PF03141_consen 374 AGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEM 453 (506)
T ss_pred ccccHHHHHhccCCceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEeecCC----CeeEEEEEe
Q 027471 159 DRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTND----NQGMLCVHK 207 (223)
Q Consensus 159 DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~~~~----~e~~L~~~K 207 (223)
||||||||++||||+.+++.+|++|+++|||++.+.++++ +|++|+|||
T Consensus 454 DRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 454 DRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred HhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCCCCCCceEEEEEC
Confidence 9999999999999999999999999999999999998765 799999998
No 2
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=100.00 E-value=1.8e-41 Score=323.51 Aligned_cols=188 Identities=22% Similarity=0.371 Sum_probs=155.1
Q ss_pred CCCCCcCCCCCCCCC------CCCCcccccccCc--cCCCCc--cchhHhhhhHHHHHhhhhhhccC----C--CCCCce
Q 027471 9 SKRGSRWPLQWPLRL------EKPPYWLNSEAGV--YGKAAP--EDFTADYQHWKNVVSKSYLNGMG----I--NWSFVR 72 (223)
Q Consensus 9 ~~~g~~~p~~WP~rl------~~~p~rl~~~~g~--~~~~~~--~~f~~D~~~W~~~v~~~Y~~~l~----i--~~~~iR 72 (223)
.++||+.|.+||+++ |+|+++|++.++. |..... =.|.....+|++++.+ |++.|+ + ..|+||
T Consensus 41 ~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~~gd~~~FPgggt~F~~Ga~~-Yid~i~~~~~~~~~~g~iR 119 (506)
T PF03141_consen 41 PPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRVEGDKFRFPGGGTMFPHGADH-YIDQIAEMIPLIKWGGGIR 119 (506)
T ss_pred CCccCCCCCCCCcccceeeecccCchHHhhhcccccceeecCCEEEeCCCCccccCCHHH-HHHHHHHHhhccccCCceE
Confidence 467999999999999 7889999886654 222222 2356677778999998 997664 3 558999
Q ss_pred EEEeeCCchHHHHHHhhCCCeEEEEecCCCCCC-ChhhHHhhCcccccccc-cccCCCCCcchhhhhhhhhhcccccccc
Q 027471 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFGLYHDW-CESFNTYPRTYDLLHADHLFSTIKKRCS 150 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~-~l~~i~eRGLi~~~~dw-ce~f~tyPrtyDllH~~~lfs~~~~rC~ 150 (223)
++||+|||+|+|||+|.+++|++|+++|.+++. +.||++|||+++++.-. .++|+++.++|||+||+ ||.
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcs--------rc~ 191 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCS--------RCL 191 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcc--------ccc
Confidence 999999999999999999999999999999874 99999999999887632 24666566999999999 666
Q ss_pred hh------HHHHhhhhcccCCcEEEEecc----------HHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEecc
Q 027471 151 LK------AVVAEVDRILRPDGNLILRDD----------AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKTY 209 (223)
Q Consensus 151 i~------~vl~E~DRILRPgG~~ii~D~----------~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~~ 209 (223)
+. .+|+|+|||||||||||++.+ .+++.+|++++++|||+.... +..+.|.||+.
T Consensus 192 i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~l~~~lCW~~va~----~~~~aIwqKp~ 262 (506)
T PF03141_consen 192 IPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMEDLAKSLCWKKVAE----KGDTAIWQKPT 262 (506)
T ss_pred ccchhcccceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHHHHHHHHHHHhee----eCCEEEEeccC
Confidence 65 899999999999999999833 457899999999999998754 33489999975
No 3
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.37 E-value=6.6e-14 Score=100.70 Aligned_cols=89 Identities=21% Similarity=0.325 Sum_probs=61.4
Q ss_pred EeeCCchHHHHHHhhCC-C--eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCCcchhhhhhhhhhcccccc
Q 027471 75 MDMRAVYGGFAAALKDL-K--VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYPRTYDLLHADHLFSTIKKR 148 (223)
Q Consensus 75 LDmgaG~GgFAA~L~~~-~--V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyPrtyDllH~~~lfs~~~~r 148 (223)
||+|||.|-+++.|.++ + |+++.+++. .++.+.++.-.. ..+.--+.++.-+++||+|+|.++|++..
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~----~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~-- 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE----MLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE-- 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH----HHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH----HHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--
Confidence 89999999999999888 4 455555443 444444444322 33322234433339999999999999883
Q ss_pred cchhHHHHhhhhcccCCcEEEE
Q 027471 149 CSLKAVVAEVDRILRPDGNLIL 170 (223)
Q Consensus 149 C~i~~vl~E~DRILRPgG~~ii 170 (223)
....++.|+.|+|||||+++|
T Consensus 75 -~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 -DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -HHHHHHHHHHHHEEEEEEEEE
T ss_pred -CHHHHHHHHHHHcCcCeEEeC
Confidence 457999999999999999986
No 4
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.14 E-value=1.6e-11 Score=110.20 Aligned_cols=109 Identities=19% Similarity=0.321 Sum_probs=77.1
Q ss_pred hhhccCCCCCCceEEEeeCCchHHHHHHhhCC-C--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhh
Q 027471 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-K--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLL 136 (223)
Q Consensus 60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDll 136 (223)
+.+.++|++|. +|||+|||.|+++.+++++ + |+.+++++.+.....+.+.++||...+.=-|+.+..++.+||-|
T Consensus 54 ~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~I 131 (273)
T PF02353_consen 54 LCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRI 131 (273)
T ss_dssp HHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEE
T ss_pred HHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEE
Confidence 66778888774 8999999999999999998 5 45566665544445567789998764443345666677799999
Q ss_pred hhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
-|-+.|.|..+ -..+.++..++|+|+|||.+++.
T Consensus 132 vSi~~~Ehvg~-~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 132 VSIEMFEHVGR-KNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp EEESEGGGTCG-GGHHHHHHHHHHHSETTEEEEEE
T ss_pred EEEechhhcCh-hHHHHHHHHHHHhcCCCcEEEEE
Confidence 99888988764 34678999999999999999986
No 5
>PLN02244 tocopherol O-methyltransferase
Probab=99.14 E-value=5.2e-11 Score=108.97 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=72.0
Q ss_pred CceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCccc---cc-ccccccCCCCC-cchhhhhhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFG---LY-HDWCESFNTYP-RTYDLLHADHL 141 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~---~~-~dwce~f~tyP-rtyDllH~~~l 141 (223)
...+|||+|||.|+++..|.++ .|+.++++|.......+.+.++|+.. .. .|. +.++ |+ .+||+|.|...
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~-~~~~-~~~~~FD~V~s~~~ 195 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA-LNQP-FEDGQFDLVWSMES 195 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-ccCC-CCCCCccEEEECCc
Confidence 4567999999999999999875 57777777664443444555667643 22 232 2233 44 89999999888
Q ss_pred hcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
+.+..+. ..+|.|+-|+|||||.+++.+
T Consensus 196 ~~h~~d~---~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 196 GEHMPDK---RKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred hhccCCH---HHHHHHHHHHcCCCcEEEEEE
Confidence 8777653 589999999999999999964
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.09 E-value=1.5e-10 Score=102.33 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=68.1
Q ss_pred ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh-------Cc--ccccccccccCCCCC-cchhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER-------GL--FGLYHDWCESFNTYP-RTYDL 135 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR-------GL--i~~~~dwce~f~tyP-rtyDl 135 (223)
-.+|||+|||+|.++..|.++ .|+.+.+++. .++.+.+| +. +..+..-++.++ || ++||+
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~----ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~ 148 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSE----QLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDA 148 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHH----HHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeE
Confidence 357999999999999888764 4777777655 34433333 12 223333234454 45 89999
Q ss_pred hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
|.+...+++..+ ...+|.|+-|+|||||.+++.|-
T Consensus 149 V~~~~~l~~~~d---~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 149 ITMGYGLRNVVD---RLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EEEecccccCCC---HHHHHHHHHHHcCcCcEEEEEEC
Confidence 999988887765 46899999999999999998753
No 7
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.07 E-value=4e-10 Score=96.02 Aligned_cols=147 Identities=19% Similarity=0.243 Sum_probs=98.2
Q ss_pred hhHHHHHhhh-hh-hccCCCCCCceEEEeeCCchHHHHHHhhC--C--CeEEEEecCCCCCCChhhHHhhCcc--ccccc
Q 027471 50 QHWKNVVSKS-YL-NGMGINWSFVRNVMDMRAVYGGFAAALKD--L--KVWVMNVVPIESPDTLPIIYERGLF--GLYHD 121 (223)
Q Consensus 50 ~~W~~~v~~~-Y~-~~l~i~~~~iRnvLDmgaG~GgFAA~L~~--~--~V~vmnv~p~~~~~~l~~i~eRGLi--~~~~d 121 (223)
+.|++++-.+ ++ .. ++. -.+|||+|||+|.++..++. . .|+.+..++.......+.+.+.|+. -.++.
T Consensus 27 ~~~~~~~~d~l~l~~~--l~~--g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~ 102 (187)
T PRK00107 27 ELWERHILDSLAIAPY--LPG--GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG 102 (187)
T ss_pred HHHHHHHHHHHHHHhh--cCC--CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec
Confidence 4788777431 11 22 233 45799999999998887763 2 4666666554433344555666763 34444
Q ss_pred ccccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEee--c---
Q 027471 122 WCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY--T--- 196 (223)
Q Consensus 122 wce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~--~--- 196 (223)
-.+.+.. +.+||+|-|.. -..++.++.++.|+|||||.+++-+.......++.+++.+-|.+.... +
T Consensus 103 d~~~~~~-~~~fDlV~~~~-------~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 174 (187)
T PRK00107 103 RAEEFGQ-EEKFDVVTSRA-------VASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPG 174 (187)
T ss_pred cHhhCCC-CCCccEEEEcc-------ccCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCC
Confidence 3334443 57999999863 234678999999999999999999888888899999999999865332 1
Q ss_pred -CCCeeEEEEEec
Q 027471 197 -NDNQGMLCVHKT 208 (223)
Q Consensus 197 -~~~e~~L~~~K~ 208 (223)
++...+.|.+|+
T Consensus 175 ~~~~~~~~~~~~~ 187 (187)
T PRK00107 175 LDGERHLVIIRKK 187 (187)
T ss_pred CCCcEEEEEEecC
Confidence 223445555653
No 8
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.05 E-value=3.9e-11 Score=105.29 Aligned_cols=115 Identities=17% Similarity=0.279 Sum_probs=67.9
Q ss_pred hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCc--ccccccc
Q 027471 50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGL--FGLYHDW 122 (223)
Q Consensus 50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGL--i~~~~dw 122 (223)
+.|++.+.+ . ++... -..|||++||+|-.+..|.++ .|..+.+++..-....+.+.+.|. +-.+..-
T Consensus 33 ~~wr~~~~~-~---~~~~~--g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~d 106 (233)
T PF01209_consen 33 RRWRRKLIK-L---LGLRP--GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGD 106 (233)
T ss_dssp ----SHHHH-H---HT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-B
T ss_pred HHHHHHHHh-c---cCCCC--CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcC
Confidence 788887765 2 33333 348999999999999988764 466777766533222233333444 3344433
Q ss_pred cccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 123 CESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 123 ce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
+|.++.-++|||.+-|+..+....+ .+..|.||-|||||||.+++-|-
T Consensus 107 a~~lp~~d~sfD~v~~~fglrn~~d---~~~~l~E~~RVLkPGG~l~ile~ 154 (233)
T PF01209_consen 107 AEDLPFPDNSFDAVTCSFGLRNFPD---RERALREMYRVLKPGGRLVILEF 154 (233)
T ss_dssp TTB--S-TT-EEEEEEES-GGG-SS---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHhcCCCCceeEEEHHhhHHhhCC---HHHHHHHHHHHcCCCeEEEEeec
Confidence 5566644499999999877776654 46899999999999999988643
No 9
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.04 E-value=1.4e-10 Score=98.01 Aligned_cols=118 Identities=23% Similarity=0.307 Sum_probs=78.2
Q ss_pred eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCC--CCCcchhhhhhhhhhccc
Q 027471 72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN--TYPRTYDLLHADHLFSTI 145 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~--tyPrtyDllH~~~lfs~~ 145 (223)
+.|||+|||.|+++..+.+. .|+.+.++|.......+.+.+.|+-..+.--+..+. .++.+||+|++..+|.+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 36999999999999988764 355566644332223333445566432211112222 256899999999999887
Q ss_pred ccccchhHHHHhhhhcccCCcEEEEeccHH----------------HHHHHHHHHHhCCCeeE
Q 027471 146 KKRCSLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~~~----------------~~~~i~~i~~~l~W~~~ 192 (223)
.+ ...++.++.|+|||||++++.+... ...++.+++..-.+++.
T Consensus 81 ~~---~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 81 KD---KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred CC---HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEE
Confidence 65 4689999999999999999986421 12445566666666654
No 10
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.03 E-value=3.1e-10 Score=98.81 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=68.7
Q ss_pred CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccc
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTI 145 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~ 145 (223)
.-..|||+|||.|.++.+|.++ .|+.+.++|. .++.+.++++--...| .+.+. .+.+||+|+|..+|.+.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~----~~~~a~~~~~~~~~~d-~~~~~-~~~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPE----MVAAARERGVDARTGD-VRDWK-PKPDTDVVVSNAALQWV 102 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHH----HHHHHHhcCCcEEEcC-hhhCC-CCCCceEEEEehhhhhC
Confidence 3478999999999999999876 4666666543 5566666664322222 22331 23899999999999877
Q ss_pred ccccchhHHHHhhhhcccCCcEEEEe
Q 027471 146 KKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 146 ~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
.+ .+.++.|+-|+|||||.+++.
T Consensus 103 ~d---~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 103 PE---HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred CC---HHHHHHHHHHhCCCCcEEEEE
Confidence 64 368999999999999999997
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.00 E-value=3.1e-10 Score=100.85 Aligned_cols=116 Identities=16% Similarity=0.261 Sum_probs=81.9
Q ss_pred hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc--cccccccc
Q 027471 50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL--FGLYHDWC 123 (223)
Q Consensus 50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL--i~~~~dwc 123 (223)
..|++..-. .+++. .--+|||++||+|-+|..+++. .|+.+.+++.+-....+..-+.|. +-.++.-.
T Consensus 37 ~~Wr~~~i~----~~~~~--~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA 110 (238)
T COG2226 37 RLWRRALIS----LLGIK--PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA 110 (238)
T ss_pred HHHHHHHHH----hhCCC--CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech
Confidence 678777654 34433 5678999999999999999887 467777755532223333333332 22345446
Q ss_pred ccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471 124 ESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA 174 (223)
Q Consensus 124 e~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~ 174 (223)
|.+|+-++|||++-++..+.+..+ ++.+|.||.|||+|||.+++-|..
T Consensus 111 e~LPf~D~sFD~vt~~fglrnv~d---~~~aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 111 ENLPFPDNSFDAVTISFGLRNVTD---IDKALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred hhCCCCCCccCEEEeeehhhcCCC---HHHHHHHHHHhhcCCeEEEEEEcC
Confidence 788844499999999977776664 679999999999999999887543
No 12
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.99 E-value=3.1e-10 Score=89.33 Aligned_cols=97 Identities=21% Similarity=0.326 Sum_probs=67.0
Q ss_pred CCceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhccccc
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~ 147 (223)
..-.+|||+|||+|.++..|.+.+..+.-+-+.. ..++. +-.....++ +.....| ++||+|+|..+|++..+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~--~~~~~---~~~~~~~~~--~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISP--QMIEK---RNVVFDNFD--AQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSH--HHHHH---TTSEEEEEE--CHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCH--HHHhh---hhhhhhhhh--hhhhhccccchhhHhhHHHHhhccc
Confidence 3456899999999999999998866443331110 01111 111111111 1122234 99999999999999885
Q ss_pred ccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471 148 RCSLKAVVAEVDRILRPDGNLILRDDAE 175 (223)
Q Consensus 148 rC~i~~vl~E~DRILRPgG~~ii~D~~~ 175 (223)
...+|.++-|+|||||++++++...
T Consensus 94 ---~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 94 ---PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ---HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ---HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 5799999999999999999997753
No 13
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.98 E-value=1.1e-09 Score=94.62 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=66.7
Q ss_pred CCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-ccccccccccCCCCCcchhhhhhhhhhccc
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNTYPRTYDLLHADHLFSTI 145 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~tyPrtyDllH~~~lfs~~ 145 (223)
....+|||+|||+|.++..|.+++ |+.+.++|. .++.+.+++- ...+..-.+.++..+++||+|.|...+...
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~----~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPP----MLAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWC 116 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHH----HHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhc
Confidence 346789999999999999998764 555665543 4555555532 122221123444334899999987666543
Q ss_pred ccccchhHHHHhhhhcccCCcEEEEec
Q 027471 146 KKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 146 ~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
.+ ...+|.|+.|+|||||.++++.
T Consensus 117 ~d---~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 117 GN---LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CC---HHHHHHHHHHHcCCCeEEEEEe
Confidence 32 4689999999999999999983
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.97 E-value=2.6e-10 Score=100.93 Aligned_cols=95 Identities=17% Similarity=0.301 Sum_probs=65.5
Q ss_pred ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhh----CcccccccccccCCC--CC-cchhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYER----GLFGLYHDWCESFNT--YP-RTYDLLHADH 140 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eR----GLi~~~~dwce~f~t--yP-rtyDllH~~~ 140 (223)
-.+|||+|||+|+++..|++. .|+.++++|. .++.+.++ ..+.... ..+.. || .+||+|++..
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~----~~~~a~~~~~~~~~i~~~~---~D~~~~~~~~~~FD~V~s~~ 125 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEK----MVNIAKLRNSDKNKIEFEA---NDILKKDFPENTFDMIYSRD 125 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHH----HHHHHHHHcCcCCceEEEE---CCcccCCCCCCCeEEEEEhh
Confidence 357999999999999998654 5677777554 33333332 1122222 22222 66 8999999987
Q ss_pred hhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
.|.+... .....++.|+.|+|||||.++++|.
T Consensus 126 ~l~h~~~-~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 126 AILHLSY-ADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred hHHhCCH-HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 7766531 2346899999999999999999865
No 15
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.96 E-value=3e-10 Score=96.10 Aligned_cols=97 Identities=15% Similarity=0.245 Sum_probs=68.1
Q ss_pred eEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhccccc
Q 027471 72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFSTIKK 147 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~~~~ 147 (223)
.+|||+|||.|.++..|+++ .|+.+.++|.......+.+.++|+.. ++--|..+.. ++.+||+|-|..+|.+..
T Consensus 32 ~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~~~~~~fD~I~~~~~~~~~~- 109 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNNLTFDGEYDFILSTVVLMFLE- 109 (197)
T ss_pred CcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhhCCcCCCcCEEEEecchhhCC-
Confidence 57999999999999999988 46777776654333334455666632 1111223333 457899999998876544
Q ss_pred ccchhHHHHhhhhcccCCcEEEE
Q 027471 148 RCSLKAVVAEVDRILRPDGNLIL 170 (223)
Q Consensus 148 rC~i~~vl~E~DRILRPgG~~ii 170 (223)
......++.++.|.|||||++++
T Consensus 110 ~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 110 AKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEE
Confidence 33467999999999999999654
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.96 E-value=4.3e-10 Score=98.03 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=72.6
Q ss_pred hhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCC-Ccch
Q 027471 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTY-PRTY 133 (223)
Q Consensus 60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~ty-Prty 133 (223)
+++.++ ..-.+|||+|||.|.++..|++++ |+.+.++|.......+.+.+.|+.. +++.-.+.++.+ +++|
T Consensus 37 ~l~~l~---~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 37 LLAELP---PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHhcC---CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 455443 223589999999999999999885 5566665543332333344456532 222111223333 4899
Q ss_pred hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 134 DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
|+|.|..++++..+. ..++.++.|+|||||.+++.
T Consensus 114 D~V~~~~vl~~~~~~---~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 114 DLILFHAVLEWVADP---KSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred CEEEehhHHHhhCCH---HHHHHHHHHHcCCCeEEEEE
Confidence 999999999877653 58999999999999999876
No 17
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.96 E-value=6.8e-10 Score=94.27 Aligned_cols=114 Identities=15% Similarity=0.291 Sum_probs=72.3
Q ss_pred hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--ccccc
Q 027471 50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDW 122 (223)
Q Consensus 50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dw 122 (223)
..|.+.+-+ .+.++.+ .+|||+|||.|.++..|.+. .|+.+.++|.......+...+.++.. .++.-
T Consensus 31 ~~~~~~~l~----~l~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d 104 (231)
T TIGR02752 31 KKWRKDTMK----RMNVQAG--TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGN 104 (231)
T ss_pred HHHHHHHHH----hcCCCCC--CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEec
Confidence 445544433 3444443 58999999999999988754 46667665543222222223334422 22221
Q ss_pred cccCCCCC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 123 CESFNTYP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 123 ce~f~tyP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
++.++ +| .+||+|++...+.+..+ ...++.|+-|+|||||.+++.+.
T Consensus 105 ~~~~~-~~~~~fD~V~~~~~l~~~~~---~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 105 AMELP-FDDNSFDYVTIGFGLRNVPD---YMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred hhcCC-CCCCCccEEEEecccccCCC---HHHHHHHHHHHcCcCeEEEEEEC
Confidence 22222 45 89999999877766554 35889999999999999998754
No 18
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.91 E-value=6.2e-10 Score=94.10 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=65.6
Q ss_pred eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhccccc
Q 027471 72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFSTIKK 147 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~~~~ 147 (223)
.+|||+|||+|.++.+|++++ |+.+.++|..-....+.+.+.|+. +...-+ .+.. ++.+||+|.|..+|.+...
T Consensus 32 ~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~-d~~~~~~~~~fD~I~~~~~~~~~~~ 109 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP-LRTDAY-DINAAALNEDYDFIFSTVVFMFLQA 109 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEec-cchhccccCCCCEEEEecccccCCH
Confidence 489999999999999998874 666776654332233344455653 111111 1222 4578999999888876542
Q ss_pred ccchhHHHHhhhhcccCCcEEEE
Q 027471 148 RCSLKAVVAEVDRILRPDGNLIL 170 (223)
Q Consensus 148 rC~i~~vl~E~DRILRPgG~~ii 170 (223)
-..+.++-++.|.|+|||++++
T Consensus 110 -~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 110 -GRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred -HHHHHHHHHHHHHhCCCcEEEE
Confidence 3467899999999999998544
No 19
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.90 E-value=4e-10 Score=84.66 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=65.2
Q ss_pred eEEEeeCCchHHHHHHhhC--C--CeEEEEecCCCCCCChhhHHhhCcccccccccccC---CCCCcchhhhhhhh-hhc
Q 027471 72 RNVMDMRAVYGGFAAALKD--L--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF---NTYPRTYDLLHADH-LFS 143 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~--~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f---~tyPrtyDllH~~~-lfs 143 (223)
.+|||+|||+|.++.+|++ . .|+.+..+|..-....+.+.+.++..-+.=-|+.+ ...+..||+|.+.. .+.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 82 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLH 82 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCccc
Confidence 4789999999999999988 5 45555555543332333333344433222112344 33556799999988 222
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
.+.+......+|-++.+.|||||++++++
T Consensus 83 ~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 83 FLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 23322344588999999999999999975
No 20
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.85 E-value=9.7e-09 Score=85.41 Aligned_cols=129 Identities=14% Similarity=0.013 Sum_probs=81.1
Q ss_pred HHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccC-CC
Q 027471 54 NVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF-NT 128 (223)
Q Consensus 54 ~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f-~t 128 (223)
..+...-++.+.+.. -.+|||+|||.|.++.+++.+ .|+.+.+.|.......+.+...|+-. +.-.|+.. ..
T Consensus 17 ~~~r~~~~~~l~~~~--~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~~~~ 93 (187)
T PRK08287 17 EEVRALALSKLELHR--AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEAPIE 93 (187)
T ss_pred HHHHHHHHHhcCCCC--CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCchhh
Confidence 334432334455443 457999999999999888654 46666665543221222222334422 11111222 23
Q ss_pred CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec-cHHHHHHHHHHHHhCCCee
Q 027471 129 YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD-DAETIVEVEDLVKSLHWDV 191 (223)
Q Consensus 129 yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D-~~~~~~~i~~i~~~l~W~~ 191 (223)
++..||++.+++.. ..+..++.++.|+|+|||.+++.+ ..+...++.++++...+..
T Consensus 94 ~~~~~D~v~~~~~~------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~ 151 (187)
T PRK08287 94 LPGKADAIFIGGSG------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSE 151 (187)
T ss_pred cCcCCCEEEECCCc------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCc
Confidence 56789999886432 245688999999999999999976 4556677888888888853
No 21
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.85 E-value=5.5e-09 Score=96.08 Aligned_cols=95 Identities=13% Similarity=0.159 Sum_probs=68.2
Q ss_pred eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh----Cc---ccccccccccCCCCCcchhhhhhhhhh
Q 027471 72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER----GL---FGLYHDWCESFNTYPRTYDLLHADHLF 142 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR----GL---i~~~~dwce~f~tyPrtyDllH~~~lf 142 (223)
.+|||+|||.|.++..|+..+ |+.+..++. .++++.++ ++ +..++.-++.++..+++||+|-|..++
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~----~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDK----NVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 479999999999999998874 566655543 34444333 22 112222123344334899999999999
Q ss_pred cccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 143 STIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
.|..+. +.+|.|+-|+|||||.+++++.
T Consensus 209 eHv~d~---~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 209 EHVANP---AEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred HhcCCH---HHHHHHHHHHcCCCcEEEEEEC
Confidence 988763 6899999999999999999854
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.84 E-value=1.9e-09 Score=98.55 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=62.7
Q ss_pred ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHh-hCc---ccccccccccCCCCCcchhhhhhhhhhc
Q 027471 71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYE-RGL---FGLYHDWCESFNTYPRTYDLLHADHLFS 143 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~e-RGL---i~~~~dwce~f~tyPrtyDllH~~~lfs 143 (223)
-+.|||+|||.|.++.+|++.+ |+.+..++.... +.+.+.. .+. +-+...=.+.++. +.+||+|+|.+++.
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~-q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~ 200 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLC-QFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLY 200 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHH-HHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhh
Confidence 3789999999999999998864 555554332111 0011110 011 1122211123443 68999999998887
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
|..+ ...+|.++.|+|||||.+++.
T Consensus 201 H~~d---p~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 HRRS---PLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ccCC---HHHHHHHHHHhcCCCcEEEEE
Confidence 7543 468999999999999999986
No 23
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.82 E-value=2.1e-09 Score=80.01 Aligned_cols=91 Identities=22% Similarity=0.345 Sum_probs=54.4
Q ss_pred EeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccc-cccccCCCCC-cchhhhhhhhhhcccc
Q 027471 75 MDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYH-DWCESFNTYP-RTYDLLHADHLFSTIK 146 (223)
Q Consensus 75 LDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~-dwce~f~tyP-rtyDllH~~~lfs~~~ 146 (223)
||+|||+|.+..++.++ .++.+.++|..-....+...+.+... ... +--+.+...+ ++||+|.+.+++++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 79999999999999776 56778888887654555555555422 111 1011222233 5999999999999984
Q ss_pred cccchhHHHHhhhhcccCCcEE
Q 027471 147 KRCSLKAVVAEVDRILRPDGNL 168 (223)
Q Consensus 147 ~rC~i~~vl~E~DRILRPgG~~ 168 (223)
+ ++.++..+.|+|||||.+
T Consensus 81 ~---~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 D---IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----HHHHHHHHTTT-TSS-EE
T ss_pred h---HHHHHHHHHHHcCCCCCC
Confidence 3 569999999999999986
No 24
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.82 E-value=1.7e-09 Score=96.43 Aligned_cols=117 Identities=15% Similarity=0.240 Sum_probs=78.2
Q ss_pred EEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhcccccc
Q 027471 73 NVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFSTIKKR 148 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~~~~r 148 (223)
+|||+|||.|.++.+|++++ |+.+.+++.......+.+.+.|+ . +.--|..+.. .+..||+|.|..+|.+.. +
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-~-v~~~~~D~~~~~~~~~fD~I~~~~vl~~l~-~ 199 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-N-IRTGLYDINSASIQEEYDFILSTVVLMFLN-R 199 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-c-eEEEEechhcccccCCccEEEEcchhhhCC-H
Confidence 79999999999999998875 55565554433323344556676 2 1111223333 368999999998887654 3
Q ss_pred cchhHHHHhhhhcccCCcEEEEe---ccH--------H---HHHHHHHHHHhCCCeeEEe
Q 027471 149 CSLKAVVAEVDRILRPDGNLILR---DDA--------E---TIVEVEDLVKSLHWDVRMI 194 (223)
Q Consensus 149 C~i~~vl~E~DRILRPgG~~ii~---D~~--------~---~~~~i~~i~~~l~W~~~~~ 194 (223)
-.+..++.+|.|+|+|||++++- +.. . .-.+++.+++. |+....
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence 45679999999999999996553 111 1 13567777776 887543
No 25
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.79 E-value=1.8e-08 Score=83.24 Aligned_cols=120 Identities=14% Similarity=0.192 Sum_probs=77.5
Q ss_pred eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc-cc-ccccccCCCCCcchhhhhhhhhhcccc-
Q 027471 72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG-LY-HDWCESFNTYPRTYDLLHADHLFSTIK- 146 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~-~~-~dwce~f~tyPrtyDllH~~~lfs~~~- 146 (223)
.+|||+|||+|.++..+..++ |+.+.+.|.......+.+...|+-. ++ .|+ +...+.+||+|-++.-|....
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDL---FKGVRGKFDVILFNPPYLPLED 97 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccc---ccccCCcccEEEECCCCCCCcc
Confidence 469999999999999998874 4444554443221222222233311 22 232 223357999988775553221
Q ss_pred -----------------cccchhHHHHhhhhcccCCcEEEEeccHHH-HHHHHHHHHhCCCeeEEe
Q 027471 147 -----------------KRCSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVRMI 194 (223)
Q Consensus 147 -----------------~rC~i~~vl~E~DRILRPgG~~ii~D~~~~-~~~i~~i~~~l~W~~~~~ 194 (223)
.++.++.+|.++.|+|+|||.+++.+.... ...+.++++...++....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 123467899999999999999999866554 667777788888887644
No 26
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.77 E-value=3.9e-09 Score=92.07 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=69.2
Q ss_pred ceEEEeeCCchHHHHHHhhC----C--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhc
Q 027471 71 VRNVMDMRAVYGGFAAALKD----L--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFS 143 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~----~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs 143 (223)
-.+|||+|||+|..+.+|++ . .|+.+..+|.......+.+.+.|+..-+.=-|..+...| ..||++-|...++
T Consensus 57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l~ 136 (247)
T PRK15451 57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQ 136 (247)
T ss_pred CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHHH
Confidence 35799999999999887765 2 466666666543333333333454322222234555555 5699998887777
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
+..+ .....++.|+.|+|+|||.+++.|.
T Consensus 137 ~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 137 FLEP-SERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hCCH-HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6653 3356899999999999999999864
No 27
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.77 E-value=1.5e-09 Score=94.65 Aligned_cols=148 Identities=16% Similarity=0.295 Sum_probs=93.9
Q ss_pred hhHHHHHhhhhhhcc--CCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhh--Cccc--cccc
Q 027471 50 QHWKNVVSKSYLNGM--GINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYER--GLFG--LYHD 121 (223)
Q Consensus 50 ~~W~~~v~~~Y~~~l--~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eR--GLi~--~~~d 121 (223)
..|.++.+ |-..| .+....+++++++|||-|-|.+.|+.+ .++++.++|. .++.+.+| ++.. ..+
T Consensus 23 ~~~YE~~K--~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~----Al~~Ar~Rl~~~~~V~~~~- 95 (201)
T PF05401_consen 23 TSWYERRK--YRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPR----ALARARERLAGLPHVEWIQ- 95 (201)
T ss_dssp T-HHHHHH--HHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HH----HHHHHHHHTTT-SSEEEEE-
T ss_pred CCHHHHHH--HHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHH----HHHHHHHhcCCCCCeEEEE-
Confidence 35666654 33323 377899999999999999999999998 7899998776 44444433 3322 222
Q ss_pred ccccCCC-CC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHH----------HHHHHHHHHhCCC
Q 027471 122 WCESFNT-YP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAET----------IVEVEDLVKSLHW 189 (223)
Q Consensus 122 wce~f~t-yP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~----------~~~i~~i~~~l~W 189 (223)
..++. .| .+|||||++.++-.+.+.-.+..++-.+...|+|||.+|+-.-.+. .+.|..++...-=
T Consensus 96 --~dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~ 173 (201)
T PF05401_consen 96 --ADVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT 173 (201)
T ss_dssp --S-TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred --CcCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh
Confidence 34555 56 9999999999999888766678899999999999999999643331 2455555544443
Q ss_pred eeEEe---ecCCCeeEEEEE
Q 027471 190 DVRMI---YTNDNQGMLCVH 206 (223)
Q Consensus 190 ~~~~~---~~~~~e~~L~~~ 206 (223)
++.-. ....+|.-|+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~ 193 (201)
T PF05401_consen 174 EVERVECRGGSPNEDCLLAR 193 (201)
T ss_dssp EEEEEEEE-SSTTSEEEEEE
T ss_pred heeEEEEcCCCCCCceEeee
Confidence 43321 123456666664
No 28
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.77 E-value=9.6e-09 Score=96.12 Aligned_cols=102 Identities=19% Similarity=0.293 Sum_probs=69.4
Q ss_pred hccCCCCCCceEEEeeCCchHHHHHHhhCC-C--eEEEEecCCCCCCChhhHHhh--CcccccccccccCCCCCcchhhh
Q 027471 62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-K--VWVMNVVPIESPDTLPIIYER--GLFGLYHDWCESFNTYPRTYDLL 136 (223)
Q Consensus 62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-~--V~vmnv~p~~~~~~l~~i~eR--GLi~~~~dwce~f~tyPrtyDll 136 (223)
+.++++.+ .+|||+|||+|+++..++++ + |+.+.++|. +++.+.++ |+. +.--+..+...+.+||.|
T Consensus 161 ~~l~l~~g--~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~----~l~~A~~~~~~l~--v~~~~~D~~~l~~~fD~I 232 (383)
T PRK11705 161 RKLQLKPG--MRVLDIGCGWGGLARYAAEHYGVSVVGVTISAE----QQKLAQERCAGLP--VEIRLQDYRDLNGQFDRI 232 (383)
T ss_pred HHhCCCCC--CEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHhccCe--EEEEECchhhcCCCCCEE
Confidence 33445444 58999999999999999865 4 555665544 44444443 331 111122333346899999
Q ss_pred hhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
.|..+|.+... ...+.++.++.|+|+|||.+++.+
T Consensus 233 vs~~~~ehvg~-~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 233 VSVGMFEHVGP-KNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred EEeCchhhCCh-HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 99888877643 235689999999999999999963
No 29
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.76 E-value=5.9e-09 Score=87.94 Aligned_cols=125 Identities=14% Similarity=0.191 Sum_probs=79.5
Q ss_pred hhHHHHHhhhhhhccC-CCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccccc
Q 027471 50 QHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDW 122 (223)
Q Consensus 50 ~~W~~~v~~~Y~~~l~-i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dw 122 (223)
..|++.+.. =+..+. ++ -.+|||+|||+|.++..|+.. .|+.+..++....-..+.+.+.|+-. +++
T Consensus 25 ~~~~~~~~d-~i~~~~~~~---~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~-- 98 (181)
T TIGR00138 25 EIWERHILD-SLKLLEYLD---GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVN-- 98 (181)
T ss_pred HHHHHHHHH-HHHHHHhcC---CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEe--
Confidence 466666644 111111 22 468999999999877766532 47777665543222233344456532 333
Q ss_pred cccCCC--CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCC
Q 027471 123 CESFNT--YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLH 188 (223)
Q Consensus 123 ce~f~t--yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~ 188 (223)
..... .+.+||+|-|.. + ..++.++.++.|+|||||.+++........++..+.+++|
T Consensus 99 -~d~~~~~~~~~fD~I~s~~-~------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~ 158 (181)
T TIGR00138 99 -GRAEDFQHEEQFDVITSRA-L------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQ 158 (181)
T ss_pred -cchhhccccCCccEEEehh-h------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhh
Confidence 23333 348999998864 2 2356788899999999999999987777777777766644
No 30
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.76 E-value=3.9e-09 Score=90.94 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=66.7
Q ss_pred ceEEEeeCCchHHHHHHhhCC------CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhc
Q 027471 71 VRNVMDMRAVYGGFAAALKDL------KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFS 143 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~------~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs 143 (223)
-.+|||+|||.|.++..|.++ .|+.+.++|.......+.+.+.+...-+.=-|..+..+| ..+|++.|..+++
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l~ 133 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQ 133 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecchh
Confidence 457999999999999888763 366677655432222222222233211111123555555 5799999888887
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
+..+. ....+|.|+.|+|+|||.++++|.
T Consensus 134 ~~~~~-~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 134 FLPPE-DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hCCHH-HHHHHHHHHHHhcCCCeEEEEeec
Confidence 66432 245899999999999999999975
No 31
>PRK08317 hypothetical protein; Provisional
Probab=98.75 E-value=1.2e-08 Score=84.91 Aligned_cols=95 Identities=23% Similarity=0.343 Sum_probs=65.0
Q ss_pred ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh--CcccccccccccCCC--CC-cchhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER--GLFGLYHDWCESFNT--YP-RTYDLLHADH 140 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR--GLi~~~~dwce~f~t--yP-rtyDllH~~~ 140 (223)
-.+|||+|||.|.++..++++ .|+.+.+.|. .++.+.++ +....+.-.+..+.. ++ .+||+||+..
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~----~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEA----MLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHH----HHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 457999999999999988764 3555555433 44444444 111111111122222 34 8999999999
Q ss_pred hhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
+|.+..+. +.++.++-|+|+|||++++.+
T Consensus 96 ~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 96 VLQHLEDP---ARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hhhccCCH---HHHHHHHHHHhcCCcEEEEEe
Confidence 99887663 589999999999999999864
No 32
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.75 E-value=3.6e-08 Score=86.32 Aligned_cols=126 Identities=21% Similarity=0.192 Sum_probs=80.2
Q ss_pred ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccc
Q 027471 71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK 147 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~ 147 (223)
-.+|||+|||+|..+.++.+. .|+.+.+.|.......+.+...|+-..++ +..-..+||+|.|.....
T Consensus 120 ~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~-----~~~~~~~fD~Vvani~~~---- 190 (250)
T PRK00517 120 GKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVY-----LPQGDLKADVIVANILAN---- 190 (250)
T ss_pred CCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEE-----EccCCCCcCEEEEcCcHH----
Confidence 467999999999988887765 36667776654332223233334411111 111112799998752211
Q ss_pred ccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471 148 RCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 207 (223)
Q Consensus 148 rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K 207 (223)
.+..++-++.|+|||||++++++... ....+...++...+........+.-..++++|
T Consensus 191 --~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~~ 249 (250)
T PRK00517 191 --PLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEVLERGEWVALVGKK 249 (250)
T ss_pred --HHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence 24477889999999999999997544 45677778888888876444444455556655
No 33
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.75 E-value=9.5e-09 Score=87.45 Aligned_cols=123 Identities=17% Similarity=0.122 Sum_probs=79.1
Q ss_pred CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccc-cccccCCC-CC-cchhhhhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYH-DWCESFNT-YP-RTYDLLHADH 140 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~-dwce~f~t-yP-rtyDllH~~~ 140 (223)
.-.+|||+|||+|.++..|+++ .|+.+.++|.......+.+.+.|+.. +++ |..+.++. ++ .+||++.+..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 4578999999999999988664 46777776654332223233335422 222 32244543 54 8999987642
Q ss_pred hhc-----ccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCCeeE
Q 027471 141 LFS-----TIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 141 lfs-----~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W~~~ 192 (223)
... +...+...+.+|.++.|+|+|||.|++. +.......+.+.+..--|.+.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 211 1122334568999999999999999996 556666677766666667665
No 34
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.74 E-value=7.3e-09 Score=95.05 Aligned_cols=97 Identities=9% Similarity=-0.024 Sum_probs=60.7
Q ss_pred ceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhh-CcccccccccccCCCCC--cchhhhhhhhhhcc
Q 027471 71 VRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFNTYP--RTYDLLHADHLFST 144 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~tyP--rtyDllH~~~lfs~ 144 (223)
-++|||+|||.|.++.+|+..+ |+.+..++..-. +.+.+... +..+-++--+..+...| .+||+|-|.+++.|
T Consensus 122 g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~-q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H 200 (314)
T TIGR00452 122 GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLC-QFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYH 200 (314)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHH-HHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhc
Confidence 4799999999999999888775 333433332110 11111110 11111111111223333 68999999998887
Q ss_pred cccccchhHHHHhhhhcccCCcEEEEe
Q 027471 145 IKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 145 ~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
..+ ...+|.|+.|+|||||.+++.
T Consensus 201 ~~d---p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 201 RKS---PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred cCC---HHHHHHHHHHhcCCCCEEEEE
Confidence 653 468999999999999999986
No 35
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.74 E-value=1.8e-08 Score=86.70 Aligned_cols=127 Identities=13% Similarity=0.172 Sum_probs=71.8
Q ss_pred eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCC-------CCC-cchhhhhh
Q 027471 72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN-------TYP-RTYDLLHA 138 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~-------tyP-rtyDllH~ 138 (223)
.+|||+|||+|+|+..++++ .|..+.+.|.... .|+.-+..|. +..+ .++ .+||+|-|
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~--------~~v~~i~~D~-~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI--------VGVDFLQGDF-RDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC--------CCcEEEecCC-CChHHHHHHHHHhCCCCCCEEec
Confidence 47999999999998888665 3666777663211 1221122221 1111 133 78999888
Q ss_pred hhhhcccccc--------cchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEe-ecCCCeeEEE
Q 027471 139 DHLFSTIKKR--------CSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMI-YTNDNQGMLC 204 (223)
Q Consensus 139 ~~lfs~~~~r--------C~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~-~~~~~e~~L~ 204 (223)
+.......+. +..+.+|.|+-|+|+|||.|++..- .+.+..+++.++....-.... -..+.|.+++
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~ 203 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIV 203 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHhCceEEEEECCccccccCceeEEE
Confidence 6433221111 1235799999999999999999522 222333333233222211111 1246899999
Q ss_pred EEe
Q 027471 205 VHK 207 (223)
Q Consensus 205 ~~K 207 (223)
|..
T Consensus 204 ~~~ 206 (209)
T PRK11188 204 ATG 206 (209)
T ss_pred eec
Confidence 974
No 36
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.72 E-value=5.7e-09 Score=98.35 Aligned_cols=94 Identities=20% Similarity=0.338 Sum_probs=66.7
Q ss_pred CceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhh--Cc---ccc-cccccccCCCCC-cchhhhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYER--GL---FGL-YHDWCESFNTYP-RTYDLLHAD 139 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eR--GL---i~~-~~dwce~f~tyP-rtyDllH~~ 139 (223)
.-..|||+|||.|+++..|++. .|+.+.+++. .+..+.++ |+ +.. ..|+. .. .+| .+||+|.|.
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~----~l~~A~~~~~~~~~~v~~~~~d~~-~~-~~~~~~fD~I~s~ 339 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVN----MISFALERAIGRKCSVEFEVADCT-KK-TYPDNSFDVIYSR 339 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHH----HHHHHHHHhhcCCCceEEEEcCcc-cC-CCCCCCEEEEEEC
Confidence 4568999999999999888765 4666676543 33333322 22 112 23322 12 255 789999999
Q ss_pred hhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
+++.+..+. +.+|.|+.|+|||||.+++.|
T Consensus 340 ~~l~h~~d~---~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 340 DTILHIQDK---PALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CcccccCCH---HHHHHHHHHHcCCCeEEEEEE
Confidence 888888764 589999999999999999985
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.70 E-value=1.5e-08 Score=87.75 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=64.1
Q ss_pred CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-ccccccccccCCC--CCcchhhhhhhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNT--YPRTYDLLHADHLF 142 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~t--yPrtyDllH~~~lf 142 (223)
...+|||+|||.|.++..|+++ .|+.+.++|. .++.+.++-- +.++. ..+.+ .+.+||+|+|...|
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~----~i~~a~~~~~~~~~~~---~d~~~~~~~~~fD~v~~~~~l 103 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPA----MLAEARSRLPDCQFVE---ADIASWQPPQALDLIFANASL 103 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH----HHHHHHHhCCCCeEEE---CchhccCCCCCccEEEEccCh
Confidence 3578999999999999998764 4666666554 3333333210 11222 12222 23799999999888
Q ss_pred cccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 143 STIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
.+..+ ...+|.++-|+|||||.+++.
T Consensus 104 ~~~~d---~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 104 QWLPD---HLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred hhCCC---HHHHHHHHHHhcCCCcEEEEE
Confidence 76654 358999999999999999996
No 38
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.70 E-value=1.9e-08 Score=83.99 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=63.9
Q ss_pred eEEEeeCCchHHHHHHhhCCC----eEEEEecCCCCCCChhhHHhhC---cccccccccccCCCCCcchhhhhhhhhhcc
Q 027471 72 RNVMDMRAVYGGFAAALKDLK----VWVMNVVPIESPDTLPIIYERG---LFGLYHDWCESFNTYPRTYDLLHADHLFST 144 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~----V~vmnv~p~~~~~~l~~i~eRG---Li~~~~dwce~f~tyPrtyDllH~~~lfs~ 144 (223)
.+|||+|||.|.+...|.+.. |+.+.++|. .++.+.++. +.-+..| .+.++..+.+||+|.|..++++
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~----~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAG----MLAQAKTKLSENVQFICGD-AEKLPLEDSSFDLIVSNLALQW 110 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHH----HHHHHHHhcCCCCeEEecc-hhhCCCCCCceeEEEEhhhhhh
Confidence 679999999999999998762 455555433 233333332 1112222 2233434489999999988876
Q ss_pred cccccchhHHHHhhhhcccCCcEEEEec
Q 027471 145 IKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
..+ ...++.++.|+|+|||.+++..
T Consensus 111 ~~~---~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 111 CDD---LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred ccC---HHHHHHHHHHHcCCCcEEEEEe
Confidence 544 4689999999999999999974
No 39
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.68 E-value=3e-08 Score=88.85 Aligned_cols=114 Identities=20% Similarity=0.182 Sum_probs=72.9
Q ss_pred eEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCC-Ccchhhhhhhhhhccccc
Q 027471 72 RNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY-PRTYDLLHADHLFSTIKK 147 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty-PrtyDllH~~~lfs~~~~ 147 (223)
.+|||+|||+|.++.++++. .|+.+.+.|.......+.+...|+-..+..-+.....+ +..||+|.|..+..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~---- 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAE---- 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHH----
Confidence 68999999999988777665 46667665553322222222334432233323323333 47899999864322
Q ss_pred ccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCeeE
Q 027471 148 RCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 148 rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~~ 192 (223)
.+..++-++.|+|||||+++++.... ....+.+.+++- |+..
T Consensus 237 --~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 237 --VIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG-FTVV 279 (288)
T ss_pred --HHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc-Ccee
Confidence 23578899999999999999986543 345666666665 7654
No 40
>PRK05785 hypothetical protein; Provisional
Probab=98.67 E-value=2.5e-08 Score=86.64 Aligned_cols=104 Identities=15% Similarity=0.225 Sum_probs=69.5
Q ss_pred hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcccccccccccC
Q 027471 50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF 126 (223)
Q Consensus 50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f 126 (223)
..|++.+-+ .+... +.. -.+|||+|||+|-++..|.++ .|+.+.+++. .++.+.+++ ..++..++.+
T Consensus 35 ~~wr~~~~~-~l~~~-~~~--~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~----Ml~~a~~~~--~~~~~d~~~l 104 (226)
T PRK05785 35 VRWRAELVK-TILKY-CGR--PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAEN----MLKMNLVAD--DKVVGSFEAL 104 (226)
T ss_pred HHHHHHHHH-HHHHh-cCC--CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHH----HHHHHHhcc--ceEEechhhC
Confidence 568776654 33221 112 358999999999999999877 3555554333 455555543 2233334566
Q ss_pred CCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCc
Q 027471 127 NTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDG 166 (223)
Q Consensus 127 ~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG 166 (223)
+.-+++||+|.|...+.+..+ .+.+|.||.|||||.+
T Consensus 105 p~~d~sfD~v~~~~~l~~~~d---~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHASDN---IEKVIAEFTRVSRKQV 141 (226)
T ss_pred CCCCCCEEEEEecChhhccCC---HHHHHHHHHHHhcCce
Confidence 544499999999887765544 5699999999999954
No 41
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.67 E-value=6.4e-08 Score=80.69 Aligned_cols=129 Identities=15% Similarity=0.254 Sum_probs=72.5
Q ss_pred ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccC------CCCC-cchhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF------NTYP-RTYDLLHA 138 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f------~tyP-rtyDllH~ 138 (223)
-.+|||+|||+|+++..+.++ .|+.+.++|... ..++--+..|..+.. ..++ .+||+|=|
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~--------~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKP--------IENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccccc--------CCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 358999999999998877554 377777776420 012211222322210 1144 67898777
Q ss_pred hhhh--------cccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCCeeEEe-e----cCCCeeEEE
Q 027471 139 DHLF--------STIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHWDVRMI-Y----TNDNQGMLC 204 (223)
Q Consensus 139 ~~lf--------s~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W~~~~~-~----~~~~e~~L~ 204 (223)
+... .+....+.++.+|.++.|+|||||.+++. .....+.++-..++..-|.+... + ..+.|++++
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKLFEKVKVTKPQASRKRSAEVYIV 184 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhhhceEEEeCCCCCCcccceEEEE
Confidence 4321 11112233568999999999999999994 22222222222222222444322 2 235799999
Q ss_pred EEe
Q 027471 205 VHK 207 (223)
Q Consensus 205 ~~K 207 (223)
|..
T Consensus 185 ~~~ 187 (188)
T TIGR00438 185 AKR 187 (188)
T ss_pred Eec
Confidence 963
No 42
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.65 E-value=1.4e-08 Score=81.52 Aligned_cols=98 Identities=16% Similarity=0.279 Sum_probs=67.6
Q ss_pred ceEEEeeCCchHHHHHHhhC-----CCeEEEEecCCCCCCChhhHHhhCcc--cccccccccCCC----CCcchhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKD-----LKVWVMNVVPIESPDTLPIIYERGLF--GLYHDWCESFNT----YPRTYDLLHAD 139 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~-----~~V~vmnv~p~~~~~~l~~i~eRGLi--~~~~dwce~f~t----yPrtyDllH~~ 139 (223)
--+|||+|||+|.++-.|++ ..|+.+.++|..-....+.+.+.|+. -.++ +.+.. |+..||+|.+.
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~---~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQ---GDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEE---SBTTCGCGCSSTTEEEEEEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEE---eehhccccccCCCeeEEEEc
Confidence 35799999999999999983 24566666554333233333345664 2332 23333 34789999999
Q ss_pred hhhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471 140 HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA 174 (223)
Q Consensus 140 ~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~ 174 (223)
.++.+..+. ..+|.++-|.|+|||.+++.+..
T Consensus 81 ~~l~~~~~~---~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDP---EKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHH---HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCH---HHHHHHHHHHcCCCcEEEEEECC
Confidence 888665543 48899999999999999999776
No 43
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.63 E-value=5.6e-08 Score=82.84 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=75.5
Q ss_pred eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCC-cchhhhhhhhhhcc
Q 027471 72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP-RTYDLLHADHLFST 144 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyP-rtyDllH~~~lfs~ 144 (223)
.+|||+|||.|.++.++++. .|+.+.+.+.......+.+...|+.. +++ +..+..++ .+||+|.|.--|..
T Consensus 89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQ--SDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE--CchhccCcCCceeEEEECCCCCc
Confidence 47999999999999999875 45555554443322333333456532 222 12334455 88999987533321
Q ss_pred ------ccccc-----------------chhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCee
Q 027471 145 ------IKKRC-----------------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDV 191 (223)
Q Consensus 145 ------~~~rC-----------------~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~ 191 (223)
....+ ....++.++-|+|+|||.+++.........+++++++..+..
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 11111 023678899999999999999866666677888888877764
No 44
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.62 E-value=6.7e-08 Score=81.48 Aligned_cols=144 Identities=13% Similarity=0.136 Sum_probs=85.1
Q ss_pred ccchhH--hhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhC-----CCeEEEEecCCCCCCChhhHHhhC
Q 027471 42 PEDFTA--DYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKD-----LKVWVMNVVPIESPDTLPIIYERG 114 (223)
Q Consensus 42 ~~~f~~--D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~-----~~V~vmnv~p~~~~~~l~~i~eRG 114 (223)
.+.|.. +...+++.+...=+..+++.. -..|||+|||.|.++..++. ..|+++.+.|.......+.+..-|
T Consensus 12 d~~~~~~~~~~~t~~~~r~~~l~~l~~~~--~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g 89 (198)
T PRK00377 12 DEEFERDEEIPMTKEEIRALALSKLRLRK--GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG 89 (198)
T ss_pred hHHHccCCCCCCCHHHHHHHHHHHcCCCC--cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC
Confidence 344544 345777766652223344443 34799999999999876543 247777775553322222233335
Q ss_pred cccccc----cccccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCC
Q 027471 115 LFGLYH----DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHW 189 (223)
Q Consensus 115 Li~~~~----dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W 189 (223)
+..-+. |..+.++..+..||.+.+.. ....+..++.++.|+|+|||.+++. -..+.+.++...++.+.+
T Consensus 90 ~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~------~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 90 VLNNIVLIKGEAPEILFTINEKFDRIFIGG------GSEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF 163 (198)
T ss_pred CCCCeEEEEechhhhHhhcCCCCCEEEECC------CcccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence 322122 22222223346788877641 1234678999999999999999984 344556777777777777
Q ss_pred eeEE
Q 027471 190 DVRM 193 (223)
Q Consensus 190 ~~~~ 193 (223)
+..+
T Consensus 164 ~~~~ 167 (198)
T PRK00377 164 NLEI 167 (198)
T ss_pred CeEE
Confidence 6543
No 45
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.60 E-value=4.6e-08 Score=82.52 Aligned_cols=116 Identities=9% Similarity=0.113 Sum_probs=71.3
Q ss_pred ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCC--CCC-cchhhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFN--TYP-RTYDLLHADHL 141 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~--tyP-rtyDllH~~~l 141 (223)
-+.+||+|||.|.|+.+|+.+ .|+.+.+.+.........+...|+-. +++.-...+. .+| .++|.+++..-
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p 96 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP 96 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence 357999999999999999876 46666665443222333344555532 2221111111 155 68998876421
Q ss_pred h-----cccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHh
Q 027471 142 F-----STIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKS 186 (223)
Q Consensus 142 f-----s~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~ 186 (223)
. .+.+.|+..+.+|.++-|+|||||.+++. |.......+...+..
T Consensus 97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~ 147 (194)
T TIGR00091 97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSE 147 (194)
T ss_pred CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 1 12234566678999999999999999886 556555555544333
No 46
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.58 E-value=2.5e-08 Score=87.33 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=62.3
Q ss_pred ceEEEeeCCchHHHHHHhhC---C--CeEEEEecCCCCCCChhhHHhhCccc--cc-ccccccCCCCC-cchhhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKD---L--KVWVMNVVPIESPDTLPIIYERGLFG--LY-HDWCESFNTYP-RTYDLLHADHL 141 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~---~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~-~dwce~f~tyP-rtyDllH~~~l 141 (223)
-.+|||+|||.|..+..+.+ . .|+.+.+.|..-....+.+.+.|+.. .+ .|. +.++ ++ ++||+|++..+
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~-~~l~-~~~~~fD~Vi~~~v 155 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI-EALP-VADNSVDVIISNCV 155 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch-hhCC-CCCCceeEEEEcCc
Confidence 45999999999975543332 2 37777665543222222233345422 11 121 2223 44 79999999888
Q ss_pred hcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
+.+..+ ...++-|+-|+|||||.+++.|
T Consensus 156 ~~~~~d---~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 156 INLSPD---KERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred ccCCCC---HHHHHHHHHHHcCCCcEEEEEE
Confidence 776554 3589999999999999999974
No 47
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.58 E-value=1.7e-08 Score=87.21 Aligned_cols=117 Identities=16% Similarity=0.311 Sum_probs=81.0
Q ss_pred eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhhhccccc
Q 027471 72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHLFSTIKK 147 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~lfs~~~~ 147 (223)
-.+||+|||-|.-|-+|+++| |+.+..++..-....+++.++||. ++-+|..+.+ +|..||+|-|..+|....
T Consensus 32 g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~- 108 (192)
T PF03848_consen 32 GKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQ- 108 (192)
T ss_dssp SEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS--
T ss_pred CcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEEEEEEeccCC-
Confidence 479999999999999999996 555666655444456667778886 5555566666 558999999877776665
Q ss_pred ccchhHHHHhhhhcccCCcEEEEe---cc--------HHHH---HHHHHHHHhCCCeeEE
Q 027471 148 RCSLKAVVAEVDRILRPDGNLILR---DD--------AETI---VEVEDLVKSLHWDVRM 193 (223)
Q Consensus 148 rC~i~~vl~E~DRILRPgG~~ii~---D~--------~~~~---~~i~~i~~~l~W~~~~ 193 (223)
+-.++.++..|..-++|||++++- +. .+.. .++...+. .|++..
T Consensus 109 ~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL~~~y~--dW~il~ 166 (192)
T PF03848_consen 109 RELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGELREYYA--DWEILK 166 (192)
T ss_dssp GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHHHHHTT--TSEEEE
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHHHHHhC--CCeEEE
Confidence 456889999999999999998873 11 1222 45666655 498854
No 48
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.56 E-value=4.4e-08 Score=87.58 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=69.2
Q ss_pred CCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CCcchhhhhhhhh
Q 027471 68 WSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YPRTYDLLHADHL 141 (223)
Q Consensus 68 ~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yPrtyDllH~~~l 141 (223)
....+.|||+|||+|.++.++.++ .|+++.. |.......+.+.+.|+-.-+.-.+..|-+ +|. +|++-++++
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~~~ 224 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCRI 224 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeEhh
Confidence 455679999999999999999876 3555654 22111133445566775433323344432 554 799877777
Q ss_pred hcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
++.+.+. ....+|.++-|.|||||.+++.|.
T Consensus 225 lh~~~~~-~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 225 LYSANEQ-LSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhcCChH-HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 7776542 235789999999999999999853
No 49
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.56 E-value=9.2e-08 Score=86.90 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=77.1
Q ss_pred CCCCCceEEEeeCCchHHHHHHhhCC----------CeEEEEecCCCCCCChhhHHhhCcccc-----cccccccCCCCC
Q 027471 66 INWSFVRNVMDMRAVYGGFAAALKDL----------KVWVMNVVPIESPDTLPIIYERGLFGL-----YHDWCESFNTYP 130 (223)
Q Consensus 66 i~~~~iRnvLDmgaG~GgFAA~L~~~----------~V~vmnv~p~~~~~~l~~i~eRGLi~~-----~~dwce~f~tyP 130 (223)
+..+..-++|||+||+|-.|=.+.+. +|+|..+.|-+-.-..|...+|||-.- +-.-.|.+| ||
T Consensus 96 L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fd 174 (296)
T KOG1540|consen 96 LGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FD 174 (296)
T ss_pred cCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CC
Confidence 34555688999999999877666543 688888765543223344455666432 221246777 77
Q ss_pred -cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHHH-HHHHHHHHhC
Q 027471 131 -RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETI-VEVEDLVKSL 187 (223)
Q Consensus 131 -rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~-~~i~~i~~~l 187 (223)
.+||+...+.=.-.+.+ ++..|.|+.|||+|||.|.+-+-.++- +.++.++..-
T Consensus 175 d~s~D~yTiafGIRN~th---~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTH---IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred CCcceeEEEecceecCCC---HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhh
Confidence 99999877632223333 679999999999999999876544432 4455554443
No 50
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.55 E-value=1.5e-07 Score=87.17 Aligned_cols=131 Identities=14% Similarity=0.141 Sum_probs=82.4
Q ss_pred EEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccc-
Q 027471 73 NVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK- 147 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~- 147 (223)
.|||+|||+|.+++++.++ .|+.+.+.+..-....+.+.+.|+-+.+. ++..++..++.||+|-|.-.|+....
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~-~~D~~~~~~~~fDlIvsNPPFH~g~~~ 277 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVF-ASNVFSDIKGRFDMIISNPPFHDGIQT 277 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEE-EcccccccCCCccEEEECCCccCCccc
Confidence 5999999999999999876 35556664432222222233345443322 23345545689999999888864321
Q ss_pred -ccchhHHHHhhhhcccCCcEEEEecc--HHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471 148 -RCSLKAVVAEVDRILRPDGNLILRDD--AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 208 (223)
Q Consensus 148 -rC~i~~vl~E~DRILRPgG~~ii~D~--~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~ 208 (223)
....+.++.++-|.|+|||.++|-.+ ..+-..+++.... +......++-+++-|+|.
T Consensus 278 ~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~Fg~----~~~la~~~~f~v~~a~~~ 337 (342)
T PRK09489 278 SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETFGS----HEVLAQTGRFKVYRAIMT 337 (342)
T ss_pred cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHcCC----eEEEEeCCCEEEEEEEcc
Confidence 22356899999999999999988643 2333445544433 222224456778877763
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.53 E-value=1.3e-07 Score=89.31 Aligned_cols=97 Identities=14% Similarity=0.309 Sum_probs=65.8
Q ss_pred ceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhh-CcccccccccccCC----CCC-cchhhhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFN----TYP-RTYDLLHADHLF 142 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~----tyP-rtyDllH~~~lf 142 (223)
-.+|||+|||.|.++..|.++ .|+.+.+++. .++.+.++ +...-+.-.|..+. .+| .+||+|-|...+
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~----~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKAGQVIALDFIES----VIKKNESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHH----HHHHHHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 348999999999999999877 4555655443 33333221 22111111112221 245 899999999888
Q ss_pred cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 143 STIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
.+..+. .+..+|.|+.|+|+|||++++.|
T Consensus 114 ~~l~~~-~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 114 MYLSDK-EVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred HhCCHH-HHHHHHHHHHHhcCCCeEEEEEe
Confidence 877653 35689999999999999999974
No 52
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.51 E-value=7.9e-08 Score=84.88 Aligned_cols=91 Identities=13% Similarity=0.190 Sum_probs=57.9
Q ss_pred CceEEEeeCCchHHHHHHhhCC-------CeEEEEecCCCCCCChhhHHhhCc-cc-ccccccccCCCCCcchhhhhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL-------KVWVMNVVPIESPDTLPIIYERGL-FG-LYHDWCESFNTYPRTYDLLHADH 140 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~-------~V~vmnv~p~~~~~~l~~i~eRGL-i~-~~~dwce~f~tyPrtyDllH~~~ 140 (223)
.-.+|||+|||.|.+++.|.+. .|+.+.+++ +.++.+.++.- +. ...|. +.++.-+.+||+|.+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~----~~l~~A~~~~~~~~~~~~d~-~~lp~~~~sfD~I~~~- 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISK----VAIKYAAKRYPQVTFCVASS-HRLPFADQSLDAIIRI- 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCH----HHHHHHHHhCCCCeEEEeec-ccCCCcCCceeEEEEe-
Confidence 3467999999999999988754 134444433 35555555531 11 22221 2333223899999864
Q ss_pred hhcccccccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471 141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE 175 (223)
Q Consensus 141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~ 175 (223)
|+ +..+.|+.|+|+|||++++..+..
T Consensus 159 -~~--------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 159 -YA--------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred -cC--------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 22 235689999999999999985543
No 53
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.50 E-value=1.2e-07 Score=71.56 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=59.7
Q ss_pred cCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--cc-ccccccCCCCCcchhhh
Q 027471 64 MGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LY-HDWCESFNTYPRTYDLL 136 (223)
Q Consensus 64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~-~dwce~f~tyPrtyDll 136 (223)
+.+..+ .+|||+|||.|.++.+++++ .|+.+.+++.......+.+.+.|+.. ++ .|.-+.+...+.+||.+
T Consensus 15 ~~~~~~--~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 92 (124)
T TIGR02469 15 LRLRPG--DVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRV 92 (124)
T ss_pred cCCCCC--CEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEE
Confidence 344443 48999999999999999775 35555554432221222233344432 11 11101122233689988
Q ss_pred hhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
-+....+ .++.++-++-|.|+|||++++.
T Consensus 93 ~~~~~~~------~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 93 FIGGSGG------LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred EECCcch------hHHHHHHHHHHHcCCCCEEEEE
Confidence 6653221 2358999999999999999985
No 54
>PRK14967 putative methyltransferase; Provisional
Probab=98.50 E-value=5.5e-07 Score=77.26 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=82.9
Q ss_pred CCCcccccccCccCCCCccchhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC---CeEEEEecCC
Q 027471 25 KPPYWLNSEAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPI 101 (223)
Q Consensus 25 ~~p~rl~~~~g~~~~~~~~~f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~ 101 (223)
++|--|...+|+|. ...|++...+.+. .+++..+ ..|||+|||.|.++..+++. .|+.+.+.|.
T Consensus 4 ~~~~~~~~~~g~~~------p~~ds~~l~~~l~-----~~~~~~~--~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~ 70 (223)
T PRK14967 4 TPPDALLRAPGVYR------PQEDTQLLADALA-----AEGLGPG--RRVLDLCTGSGALAVAAAAAGAGSVTAVDISRR 70 (223)
T ss_pred CCCceeecCCCCcC------CCCcHHHHHHHHH-----hcccCCC--CeEEEecCCHHHHHHHHHHcCCCeEEEEECCHH
Confidence 44544544455442 2346655433333 2344443 47999999999999988775 3555666553
Q ss_pred CCCCChhhHHhhCcccccccccccCCC-CC-cchhhhhhhhhhccc------------------ccccchhHHHHhhhhc
Q 027471 102 ESPDTLPIIYERGLFGLYHDWCESFNT-YP-RTYDLLHADHLFSTI------------------KKRCSLKAVVAEVDRI 161 (223)
Q Consensus 102 ~~~~~l~~i~eRGLi~~~~dwce~f~t-yP-rtyDllH~~~lfs~~------------------~~rC~i~~vl~E~DRI 161 (223)
......+.+...|+--.++ +..+.. .+ ..||+|.|+--|... ...+.++.++.++-|+
T Consensus 71 ~l~~a~~n~~~~~~~~~~~--~~d~~~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 148 (223)
T PRK14967 71 AVRSARLNALLAGVDVDVR--RGDWARAVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPAL 148 (223)
T ss_pred HHHHHHHHHHHhCCeeEEE--ECchhhhccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHh
Confidence 2211111222234421111 122222 34 789999886333211 0112356788899999
Q ss_pred ccCCcEEEEec-cHHHHHHHHHHHHhCCCeeE
Q 027471 162 LRPDGNLILRD-DAETIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 162 LRPgG~~ii~D-~~~~~~~i~~i~~~l~W~~~ 192 (223)
|+|||.+++-. ......++.+.+++-.++..
T Consensus 149 Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~~~~ 180 (223)
T PRK14967 149 LAPGGSLLLVQSELSGVERTLTRLSEAGLDAE 180 (223)
T ss_pred cCCCcEEEEEEecccCHHHHHHHHHHCCCCeE
Confidence 99999999842 22233344455555555543
No 55
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.47 E-value=1.8e-07 Score=77.71 Aligned_cols=93 Identities=16% Similarity=0.312 Sum_probs=62.2
Q ss_pred CceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCc----ccccccccccCCC--CC-cchhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGL----FGLYHDWCESFNT--YP-RTYDLLH 137 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGL----i~~~~dwce~f~t--yP-rtyDllH 137 (223)
.-.+|||+|||.|.++.++.+. .++++.+.|. .++.+.++.- +-.++ ..+.. ++ .+||+++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~----~~~~~~~~~~~~~~i~~~~---~d~~~~~~~~~~~D~i~ 111 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE----MLEVAKKKSELPLNIEFIQ---ADAEALPFEDNSFDAVT 111 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH----HHHHHHHHhccCCCceEEe---cchhcCCCCCCcEEEEE
Confidence 3468999999999999988765 3444554332 3334444321 11222 22222 33 7899999
Q ss_pred hhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 138 ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
+...+++..+ ...++.++.++|+|||.+++.+
T Consensus 112 ~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 112 IAFGLRNVTD---IQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred EeeeeCCccc---HHHHHHHHHHHcCCCcEEEEEE
Confidence 9877765443 5689999999999999999864
No 56
>PRK04266 fibrillarin; Provisional
Probab=98.47 E-value=6.9e-07 Score=78.30 Aligned_cols=102 Identities=17% Similarity=0.268 Sum_probs=60.4
Q ss_pred ccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-CcccccccccccCC--CCCcchhh
Q 027471 63 GMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFN--TYPRTYDL 135 (223)
Q Consensus 63 ~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~--tyPrtyDl 135 (223)
.++++.+ -.|||+|||+|+++..|.+. .|+.+.+.|..-....+.+.++ ++..+..|-.+... ..+.+||+
T Consensus 67 ~l~i~~g--~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~ 144 (226)
T PRK04266 67 NFPIKKG--SKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV 144 (226)
T ss_pred hCCCCCC--CEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence 3566665 47999999999999999876 4777777654222222233333 22323334222111 13466888
Q ss_pred hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
+-+. ..+.-....+|.|+.|+|||||.++++
T Consensus 145 i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 145 IYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred EEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 5432 111001134688999999999999993
No 57
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.47 E-value=3.8e-07 Score=76.53 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=69.8
Q ss_pred HHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--ccc-cccccC
Q 027471 54 NVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LYH-DWCESF 126 (223)
Q Consensus 54 ~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~-dwce~f 126 (223)
..++..-...+.+.. -.+|||+|||+|.++..++.. .|+.+...|.......+.+.+.|+.. +++ |-.+.+
T Consensus 26 ~~v~~~l~~~l~~~~--~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~ 103 (196)
T PRK07402 26 REVRLLLISQLRLEP--DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECL 103 (196)
T ss_pred HHHHHHHHHhcCCCC--CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHH
Confidence 344432234444444 357999999999998877532 46667665543321122222345422 221 111111
Q ss_pred CCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH-HHHHHHHHHHHhCCC
Q 027471 127 NTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA-ETIVEVEDLVKSLHW 189 (223)
Q Consensus 127 ~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~-~~~~~i~~i~~~l~W 189 (223)
......+|.++.. ....++.++.++.|+|+|||.+++.... +....+.+.++.+..
T Consensus 104 ~~~~~~~d~v~~~-------~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~ 160 (196)
T PRK07402 104 AQLAPAPDRVCIE-------GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQA 160 (196)
T ss_pred hhCCCCCCEEEEE-------CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCC
Confidence 1112234544332 1234679999999999999999987543 344556666665543
No 58
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.47 E-value=2e-07 Score=86.71 Aligned_cols=115 Identities=12% Similarity=0.039 Sum_probs=75.0
Q ss_pred ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhC---cccccccccccCCCCCcchhhhhhhhhhc
Q 027471 71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERG---LFGLYHDWCESFNTYPRTYDLLHADHLFS 143 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRG---Li~~~~dwce~f~tyPrtyDllH~~~lfs 143 (223)
-.+|||+|||+|.++..+.+. .|+.+.+++. .++.+.++. -+.+++.-.+.++.-+.+||+|-+.+.+.
T Consensus 114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~----mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPH----QLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHH----HHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence 357999999999988877653 4666665443 333333321 12223322223333348999999988887
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEeccHH-----------------HHHHHHHHHHhCCCeeE
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDAE-----------------TIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~-----------------~~~~i~~i~~~l~W~~~ 192 (223)
++.+. +.+|.|+.|+|||||.+++.+... ..+++.++++...++..
T Consensus 190 ~~~d~---~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V 252 (340)
T PLN02490 190 YWPDP---QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDV 252 (340)
T ss_pred hCCCH---HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEE
Confidence 77654 579999999999999998864321 13556667777777654
No 59
>PRK06922 hypothetical protein; Provisional
Probab=98.47 E-value=6.9e-08 Score=96.59 Aligned_cols=103 Identities=12% Similarity=0.223 Sum_probs=66.7
Q ss_pred ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-ccccccccccCCC-CC-cchhhhhhhhhhc
Q 027471 71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FGLYHDWCESFNT-YP-RTYDLLHADHLFS 143 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~~~~dwce~f~t-yP-rtyDllH~~~lfs 143 (223)
-.+|||+|||+|.++.+|+.+ .|+.+.+++..-....+.....|. +.+++.-+..++. ++ ++||++.++.+++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 468999999999998888653 577777766432211111111222 1122222334553 54 8999999887776
Q ss_pred ccc----------cccchhHHHHhhhhcccCCcEEEEecc
Q 027471 144 TIK----------KRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 144 ~~~----------~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
++- +...+..+|.|+.|+|||||.+++.|.
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 431 123456999999999999999999864
No 60
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.46 E-value=9.4e-08 Score=80.49 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=62.4
Q ss_pred ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc--ccccccccccCCC-CCcchhhhhhhhhhccc
Q 027471 71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL--FGLYHDWCESFNT-YPRTYDLLHADHLFSTI 145 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL--i~~~~dwce~f~t-yPrtyDllH~~~lfs~~ 145 (223)
-.+|||+|||.|.++..+.+.+ |+...+.+.......+...+-|+ +.....-.+.++. .+.+||+|.+.+++.+.
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 4589999999999999887764 33333322211111111112233 2222211112222 35799999999888776
Q ss_pred ccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 146 KKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
.+ ...+|.++.|+|+|||.+++++.
T Consensus 126 ~~---~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 126 PD---PQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred CC---HHHHHHHHHHhcCCCcEEEEEec
Confidence 54 35899999999999999999753
No 61
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.46 E-value=6.2e-07 Score=74.09 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=77.4
Q ss_pred CCCCCceEEEeeCCchHHHHHHhhCCC-----eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCCcchhhhh
Q 027471 66 INWSFVRNVMDMRAVYGGFAAALKDLK-----VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYPRTYDLLH 137 (223)
Q Consensus 66 i~~~~iRnvLDmgaG~GgFAA~L~~~~-----V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyPrtyDllH 137 (223)
++.+...+|||+||+.|||..++.++. |+.+.+.|.........+ +|=+- ......+.++.-.+.||+|-
T Consensus 19 ~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i--~~d~~~~~~~~~i~~~~~~~~~~~dlv~ 96 (181)
T PF01728_consen 19 FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFI--QGDITNPENIKDIRKLLPESGEKFDLVL 96 (181)
T ss_dssp S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBT--TGGGEEEEHSHHGGGSHGTTTCSESEEE
T ss_pred CCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeee--ecccchhhHHHhhhhhccccccCcceec
Confidence 567788999999999999999999886 556777666332222222 22110 11111112221126899999
Q ss_pred hhhhhcccccc---c--chh---HHHHhhhhcccCCcEEEEe-----ccHHHHHHHHHHHHhCCCeeEEe-ecCCCeeEE
Q 027471 138 ADHLFSTIKKR---C--SLK---AVVAEVDRILRPDGNLILR-----DDAETIVEVEDLVKSLHWDVRMI-YTNDNQGML 203 (223)
Q Consensus 138 ~~~lfs~~~~r---C--~i~---~vl~E~DRILRPgG~~ii~-----D~~~~~~~i~~i~~~l~W~~~~~-~~~~~e~~L 203 (223)
|+..+....++ . .+. ..|.=+-..|||||.+|+- +..+.+..++...+.+++-.-.. ..++.|.+|
T Consensus 97 ~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Yl 176 (181)
T PF01728_consen 97 SDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEYL 176 (181)
T ss_dssp E-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEEE
T ss_pred cccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEEE
Confidence 98755432210 1 111 2223334679999988874 33456677777777766554322 235689999
Q ss_pred EEEe
Q 027471 204 CVHK 207 (223)
Q Consensus 204 ~~~K 207 (223)
+|++
T Consensus 177 v~~~ 180 (181)
T PF01728_consen 177 VCRG 180 (181)
T ss_dssp ESEE
T ss_pred EEcC
Confidence 9975
No 62
>PTZ00146 fibrillarin; Provisional
Probab=98.45 E-value=9.4e-07 Score=80.99 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=68.0
Q ss_pred hccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh-CcccccccccccCC--CCCcch
Q 027471 62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFN--TYPRTY 133 (223)
Q Consensus 62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~--tyPrty 133 (223)
+.|.|+.+ .+|||+|||+|+|+..|.+. .|.++.++|....+.+.++.+| ++..+..|-+.... ....++
T Consensus 126 ~~l~IkpG--~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 126 ANIPIKPG--SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ceeccCCC--CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCC
Confidence 33446666 48999999999999999876 3788887654433445555443 56666666443211 122678
Q ss_pred hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 134 DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
|+|-++... .+ ....++.|+.|+|||||+|+|.
T Consensus 204 DvV~~Dva~---pd--q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 204 DVIFADVAQ---PD--QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CEEEEeCCC---cc--hHHHHHHHHHHhccCCCEEEEE
Confidence 988665321 11 1235677999999999999995
No 63
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.43 E-value=1.2e-07 Score=80.87 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=63.5
Q ss_pred ceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhh----Cccccc--ccccccCCCCCcchhhhhhhhhhcc
Q 027471 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYER----GLFGLY--HDWCESFNTYPRTYDLLHADHLFST 144 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eR----GLi~~~--~dwce~f~tyPrtyDllH~~~lfs~ 144 (223)
-..|||+|||.|.++..|.+.+.-+.-+-+ ++..+..+.++ |+...+ .++.+.....+.+||+|.|..+|.+
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~--s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARLGADVTGIDA--SEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHcCCeEEEEcC--CHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 446999999999999999887543322211 11223333222 332212 2222111123488999999988887
Q ss_pred cccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 145 IKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
..+. ..+|.++.|+|+|||.+++.+.
T Consensus 127 ~~~~---~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 127 VPDP---ASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cCCH---HHHHHHHHHHcCCCcEEEEEec
Confidence 7654 4889999999999999999854
No 64
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.43 E-value=1.4e-07 Score=86.11 Aligned_cols=103 Identities=20% Similarity=0.349 Sum_probs=80.0
Q ss_pred hccCCCCCCceEEEeeCCchHHHHHHhhCC-CeEEEEe--cCCCCCCChhhHHhhCccc----ccccccccCCCCCcchh
Q 027471 62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNV--VPIESPDTLPIIYERGLFG----LYHDWCESFNTYPRTYD 134 (223)
Q Consensus 62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv--~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyPrtyD 134 (223)
+.|++++| -+|||+|||.|+.+.+++++ +|.|+-+ ++.+-....+.+.++||.. ..+|| .+++..||
T Consensus 66 ~kl~L~~G--~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~----rd~~e~fD 139 (283)
T COG2230 66 EKLGLKPG--MTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY----RDFEEPFD 139 (283)
T ss_pred HhcCCCCC--CEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc----cccccccc
Confidence 45566665 57999999999999999888 7777554 5544444667799999974 34543 44555599
Q ss_pred hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
=|-+-+.|.+... -..++++.=++++|+|||.+++-
T Consensus 140 rIvSvgmfEhvg~-~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 140 RIVSVGMFEHVGK-ENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred eeeehhhHHHhCc-ccHHHHHHHHHhhcCCCceEEEE
Confidence 9999999998875 35779999999999999999885
No 65
>PRK14968 putative methyltransferase; Provisional
Probab=98.42 E-value=6.5e-07 Score=72.79 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=72.2
Q ss_pred ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCc-----ccccccccccCCCCC-cchhhhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGL-----FGLYHDWCESFNTYP-RTYDLLHADHLF 142 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGL-----i~~~~dwce~f~tyP-rtyDllH~~~lf 142 (223)
-..|||+|||.|.++..|++++ |+.+.++|.......+.+...|+ .-..+|+.+ .++ ..||+|=+..-|
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---PFRGDKFDVILFNPPY 100 (188)
T ss_pred CCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc---cccccCceEEEECCCc
Confidence 4579999999999999998774 44455544322212222222233 224444433 334 578987544332
Q ss_pred ccc------------------ccccchhHHHHhhhhcccCCcEEEEecc-HHHHHHHHHHHHhCCCeeE
Q 027471 143 STI------------------KKRCSLKAVVAEVDRILRPDGNLILRDD-AETIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 143 s~~------------------~~rC~i~~vl~E~DRILRPgG~~ii~D~-~~~~~~i~~i~~~l~W~~~ 192 (223)
... .....++.++.++.|+|+|||.+++-.. ......+.+.+....++..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~ 169 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAE 169 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeee
Confidence 210 0123356899999999999999877532 2234567777887788754
No 66
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.41 E-value=2.5e-07 Score=78.85 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=62.4
Q ss_pred hhccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---ccc-cccccCCCCCc
Q 027471 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LYH-DWCESFNTYPR 131 (223)
Q Consensus 61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~-dwce~f~tyPr 131 (223)
++.+.+..+ .+|||+|||+|.+++.|.+. .|+.+.+.|.......+.+...|+.. +++ |-.+.++ -..
T Consensus 65 ~~~l~~~~~--~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~ 141 (205)
T PRK13944 65 CELIEPRPG--MKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHA 141 (205)
T ss_pred HHhcCCCCC--CEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCC
Confidence 344554443 57999999999999887643 46777776554332333344556532 232 3222221 127
Q ss_pred chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
+||.|.+...+ ..+.-|+-|+|+|||.+++..
T Consensus 142 ~fD~Ii~~~~~---------~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAA---------STIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCc---------chhhHHHHHhcCcCcEEEEEE
Confidence 89999987443 234457889999999999853
No 67
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.39 E-value=9.2e-07 Score=76.83 Aligned_cols=133 Identities=19% Similarity=0.254 Sum_probs=78.6
Q ss_pred ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCC-cchhhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYP-RTYDLLHADHL 141 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyP-rtyDllH~~~l 141 (223)
-.+|||+|||.|.++.+|++. .|+.+.+++.... ..+.+.+.+... ...|+ +..++ .+||+|-|.--
T Consensus 109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~-~a~~n~~~~~~~~i~~~~~d~---~~~~~~~~fD~Iv~npP 184 (275)
T PRK09328 109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALA-VARRNAKHGLGARVEFLQGDW---FEPLPGGRFDLIVSNPP 184 (275)
T ss_pred CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHHHHhCCCCcEEEEEccc---cCcCCCCceeEEEECCC
Confidence 347999999999999999765 3555555443211 111122212211 22232 33333 78999876422
Q ss_pred hccc------c-----------------cccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE-E-eec
Q 027471 142 FSTI------K-----------------KRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR-M-IYT 196 (223)
Q Consensus 142 fs~~------~-----------------~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~-~-~~~ 196 (223)
+... . .--.+..++.++.++|+|||++++.-....-..++.+++...+... . .|-
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~gf~~v~~~~d~ 264 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAGFADVETRKDL 264 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCCCceeEEecCC
Confidence 2110 0 0011347888899999999999997444445567777776666522 2 344
Q ss_pred CCCeeEEEEEe
Q 027471 197 NDNQGMLCVHK 207 (223)
Q Consensus 197 ~~~e~~L~~~K 207 (223)
.+.+++++++|
T Consensus 265 ~~~~r~~~~~~ 275 (275)
T PRK09328 265 AGRDRVVLGRR 275 (275)
T ss_pred CCCceEEEEEC
Confidence 57888888865
No 68
>PRK06202 hypothetical protein; Provisional
Probab=98.39 E-value=1.2e-07 Score=81.27 Aligned_cols=97 Identities=12% Similarity=0.210 Sum_probs=64.6
Q ss_pred CCceEEEeeCCchHHHHHHhhC----C----CeEEEEecCCCCCCChhhHHhh----CcccccccccccCCCCCcchhhh
Q 027471 69 SFVRNVMDMRAVYGGFAAALKD----L----KVWVMNVVPIESPDTLPIIYER----GLFGLYHDWCESFNTYPRTYDLL 136 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~----~----~V~vmnv~p~~~~~~l~~i~eR----GLi~~~~dwce~f~tyPrtyDll 136 (223)
..-.+|||+|||+|.++..|.+ . .|+.+.++|. .++.+.++ ++. ....-++.++.-+.+||+|
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~----~l~~a~~~~~~~~~~-~~~~~~~~l~~~~~~fD~V 133 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR----AVAFARANPRRPGVT-FRQAVSDELVAEGERFDVV 133 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH----HHHHHHhccccCCCe-EEEEecccccccCCCccEE
Confidence 4557899999999999888763 2 3555555443 44444443 221 1111134555545899999
Q ss_pred hhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
-|..+|++..+. .+..+|.||-|++| |.+++.|.
T Consensus 134 ~~~~~lhh~~d~-~~~~~l~~~~r~~~--~~~~i~dl 167 (232)
T PRK06202 134 TSNHFLHHLDDA-EVVRLLADSAALAR--RLVLHNDL 167 (232)
T ss_pred EECCeeecCChH-HHHHHHHHHHHhcC--eeEEEecc
Confidence 999999888753 34589999999999 56666554
No 69
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.37 E-value=2.2e-07 Score=79.79 Aligned_cols=97 Identities=13% Similarity=0.169 Sum_probs=60.0
Q ss_pred hccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCC--cc
Q 027471 62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP--RT 132 (223)
Q Consensus 62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyP--rt 132 (223)
+.+.+..+ .+|||+|||+|.+++.|.+. .|+.+.+.|.......+.+...|+-. +.+ +..+..++ ..
T Consensus 70 ~~l~~~~g--~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~--gd~~~~~~~~~~ 145 (212)
T PRK13942 70 ELLDLKEG--MKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIV--GDGTLGYEENAP 145 (212)
T ss_pred HHcCCCCc--CEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEE--CCcccCCCcCCC
Confidence 34444443 58999999999999877653 46666665543322222333335422 222 22333343 78
Q ss_pred hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 133 yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
||.|.+... .+.+..++-+.|||||.+++-
T Consensus 146 fD~I~~~~~---------~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 146 YDRIYVTAA---------GPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCEEEECCC---------cccchHHHHHhhCCCcEEEEE
Confidence 999998733 334455667789999999985
No 70
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.37 E-value=3.1e-07 Score=78.36 Aligned_cols=100 Identities=14% Similarity=0.122 Sum_probs=63.1
Q ss_pred hhhccCCCCCCceEEEeeCCchHHHHHHhhCC--C---eEEEEecCCCCCCChhhHHhhCcccccccccccCCC-CC--c
Q 027471 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL--K---VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-YP--R 131 (223)
Q Consensus 60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~---V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t-yP--r 131 (223)
.++.+.+..+ ..|||+|||+|.+++.|.+. . |+.+.+.|.......+.+.+.|+-. ++-.|..... ++ .
T Consensus 69 ~~~~l~~~~~--~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 69 MTELLELKPG--MKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHhCCCCc--CEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCcccCCcccC
Confidence 3345555444 48999999999999998765 2 6777666554333334444556522 1111222222 22 6
Q ss_pred chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
.||+|+++.. ...+..++-|.|+|||.+++.
T Consensus 146 ~fD~Ii~~~~---------~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAA---------GPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCCEEEEcCC---------cccccHHHHHhcCcCcEEEEE
Confidence 8999988632 344556778899999999985
No 71
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.36 E-value=9.4e-07 Score=75.07 Aligned_cols=115 Identities=8% Similarity=0.075 Sum_probs=72.3
Q ss_pred hhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh----Cccccccccc
Q 027471 50 QHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER----GLFGLYHDWC 123 (223)
Q Consensus 50 ~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR----GLi~~~~dwc 123 (223)
+.|.+.+-+ |+.. ....-.+|||+|||.|.++.+|++++ |+.+.++|. .+..+.++ ++..-+.=.+
T Consensus 39 ~~~~~~~~~-~l~~---~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~----~i~~a~~~~~~~~~~~~i~~~~ 110 (219)
T TIGR02021 39 AAMRRKLLD-WLPK---DPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQ----MVQMARNRAQGRDVAGNVEFEV 110 (219)
T ss_pred HHHHHHHHH-HHhc---CCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHH----HHHHHHHHHHhcCCCCceEEEE
Confidence 344554544 4442 12235789999999999999998875 444544433 34333333 2211111112
Q ss_pred ccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 124 ESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 124 e~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
..+...+.+||+|-+..++.+... ..+..++.++.|+++||+++.+...
T Consensus 111 ~d~~~~~~~fD~ii~~~~l~~~~~-~~~~~~l~~i~~~~~~~~~i~~~~~ 159 (219)
T TIGR02021 111 NDLLSLCGEFDIVVCMDVLIHYPA-SDMAKALGHLASLTKERVIFTFAPK 159 (219)
T ss_pred CChhhCCCCcCEEEEhhHHHhCCH-HHHHHHHHHHHHHhCCCEEEEECCC
Confidence 344445589999988877766643 3467899999999999988887644
No 72
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.35 E-value=8.5e-07 Score=79.69 Aligned_cols=123 Identities=19% Similarity=0.248 Sum_probs=73.7
Q ss_pred ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCC-cchhhhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYP-RTYDLLHADHLF 142 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyP-rtyDllH~~~lf 142 (223)
-.+|||+|||+|.++.+|+++ .|+.+.+++....-..+-+...|+.. .++. ..+...| .+||+|-|.-=+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~--D~~~~~~~~~fD~Iv~NPPy 199 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS--DLFAALPGRKYDLIVSNPPY 199 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC--chhhccCCCCccEEEECCCC
Confidence 357999999999999999865 46666665443322233333446532 2221 1233345 589998774111
Q ss_pred -------------cccc--------ccc-chhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEeec
Q 027471 143 -------------STIK--------KRC-SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYT 196 (223)
Q Consensus 143 -------------s~~~--------~rC-~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~~ 196 (223)
.+.. +.. ....++.++-+.|+|||.+++.-..+. ..+++++....|.....++
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~~~~~~~~ 274 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPFTWLEFEN 274 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCCceeeecC
Confidence 0000 111 134789999999999999998754433 6788887766554433333
No 73
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.33 E-value=8.3e-08 Score=72.09 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=57.1
Q ss_pred EEeeCCchHHHHHHhhCC-------CeEEEEecCCCCCCChhhHHhhC----cc-cccccccccCCCCCcchhhhhhhhh
Q 027471 74 VMDMRAVYGGFAAALKDL-------KVWVMNVVPIESPDTLPIIYERG----LF-GLYHDWCESFNTYPRTYDLLHADHL 141 (223)
Q Consensus 74 vLDmgaG~GgFAA~L~~~-------~V~vmnv~p~~~~~~l~~i~eRG----Li-~~~~dwce~f~tyPrtyDllH~~~l 141 (223)
|||+|||.|....++.+. .++.+.+++. .+..+.++. +- -.++.-++.++...++||+|-|.+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~----~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPE----MLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HH----HHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHH----HHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence 799999999999988754 4555666544 455555554 31 1333222233334479999999655
Q ss_pred -hcccccccchhHHHHhhhhcccCCc
Q 027471 142 -FSTIKKRCSLKAVVAEVDRILRPDG 166 (223)
Q Consensus 142 -fs~~~~rC~i~~vl~E~DRILRPgG 166 (223)
|.+.. .-.++.++-++-|+|||||
T Consensus 77 ~~~~~~-~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 77 SLHHLS-PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGGSS-HHHHHHHHHHHHHTEEEEE
T ss_pred ccCCCC-HHHHHHHHHHHHHHhCCCC
Confidence 77644 3457899999999999998
No 74
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.33 E-value=8.1e-07 Score=83.68 Aligned_cols=129 Identities=14% Similarity=0.161 Sum_probs=79.9
Q ss_pred eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-Cc-----ccccccccccCCCCC-cchhhhhhhh
Q 027471 72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-GL-----FGLYHDWCESFNTYP-RTYDLLHADH 140 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-GL-----i~~~~dwce~f~tyP-rtyDllH~~~ 140 (223)
..|||+|||+|-.+.+|.++ .|+.+.+++.... ..+.+.++ +. +.++. +..++..+ .+||+|-|.-
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~-~A~~N~~~n~~~~~~~v~~~~--~D~l~~~~~~~fDlIlsNP 306 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVA-SSRLNVETNMPEALDRCEFMI--NNALSGVEPFRFNAVLCNP 306 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHH-HHHHHHHHcCcccCceEEEEE--ccccccCCCCCEEEEEECc
Confidence 48999999999999998776 4666666543221 11111111 11 22222 23455554 6899999977
Q ss_pred hhcccc--cccchhHHHHhhhhcccCCcEEEEec--cHHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471 141 LFSTIK--KRCSLKAVVAEVDRILRPDGNLILRD--DAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 207 (223)
Q Consensus 141 lfs~~~--~rC~i~~vl~E~DRILRPgG~~ii~D--~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K 207 (223)
-|+... ..-....++.++-|+|+|||.+++-- ..++..++++++. ++....++.+=+|+-++|
T Consensus 307 Pfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~fg----~~~~va~~~kf~vl~a~k 373 (378)
T PRK15001 307 PFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG----NCTTIATNNKFVVLKAVK 373 (378)
T ss_pred CcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHcC----CceEEccCCCEEEEEEEe
Confidence 775322 11123578999999999999999873 2334455655443 344444555677777777
No 75
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.32 E-value=5.3e-07 Score=76.06 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=63.8
Q ss_pred ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccccc
Q 027471 71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKR 148 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~r 148 (223)
-.+|||+|||.|.++.+|.+.+ |+.+.+++.......+...+.|+...++--+..++..+.+||+|.|..+|.++.+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~~~- 142 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHYPQ- 142 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcCCH-
Confidence 4689999999999999998774 5555554432221222222334311111112345555689999999988877653
Q ss_pred cchhHHHHhhhhcccCCcEEEEec
Q 027471 149 CSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 149 C~i~~vl~E~DRILRPgG~~ii~D 172 (223)
..+..++.++-|++++|+.+.+..
T Consensus 143 ~~~~~~l~~l~~~~~~~~~i~~~~ 166 (230)
T PRK07580 143 EDAARMLAHLASLTRGSLIFTFAP 166 (230)
T ss_pred HHHHHHHHHHHhhcCCeEEEEECC
Confidence 246788899999887666555443
No 76
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.32 E-value=3.6e-07 Score=76.66 Aligned_cols=97 Identities=19% Similarity=0.327 Sum_probs=59.9
Q ss_pred eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCc---ccccccccccCCCCC-cchhhhhhhhhh
Q 027471 72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFNTYP-RTYDLLHADHLF 142 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGL---i~~~~dwce~f~tyP-rtyDllH~~~lf 142 (223)
..|||+|||.|.++..+.+. .|+++.+.+.......+....+++ +-.++.=.+.++ ++ .+||+|.+...+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~~l 131 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAFGL 131 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEeccc
Confidence 57999999999998888654 355555544322111111112222 222221011122 33 789999988766
Q ss_pred cccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 143 STIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
.+.. ....+|.++.++|+|||.+++.+
T Consensus 132 ~~~~---~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 132 RNVP---DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred ccCC---CHHHHHHHHHHhccCCcEEEEEE
Confidence 5443 45789999999999999998863
No 77
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.29 E-value=8.8e-07 Score=83.97 Aligned_cols=119 Identities=15% Similarity=0.108 Sum_probs=76.4
Q ss_pred ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc--cc-ccccccCCCCC-cchhhhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG--LY-HDWCESFNTYP-RTYDLLHADHLF 142 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~-~dwce~f~tyP-rtyDllH~~~lf 142 (223)
-..+||+|||.|.|..+|+.+ .+..+-+.+.........+.++|+-. ++ .|.-+-+..+| .++|.|++. |
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln--F 200 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH--F 200 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe--C
Confidence 357999999999999999865 56667665544444556667778743 22 22111123456 899999875 3
Q ss_pred c-ccc---c-ccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHH-hCCCee
Q 027471 143 S-TIK---K-RCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVK-SLHWDV 191 (223)
Q Consensus 143 s-~~~---~-rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~-~l~W~~ 191 (223)
. -|. + |=..+.+|.|+-|+|+|||.+.++ |..+....+.+.+. .-+++.
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~ 256 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKI 256 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCcee
Confidence 2 121 1 112258999999999999999885 66666555444433 334443
No 78
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.28 E-value=2.2e-06 Score=76.47 Aligned_cols=133 Identities=14% Similarity=0.157 Sum_probs=82.1
Q ss_pred eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcc---c-ccccccccCCCCC-cchhhhhhhh--
Q 027471 72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLF---G-LYHDWCESFNTYP-RTYDLLHADH-- 140 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi---~-~~~dwce~f~tyP-rtyDllH~~~-- 140 (223)
.+|||+|||+|.++.+|++. .|+.+.+++....-..+-+...|+- - ...||++.+ + ..||+|-|.-
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~---~~~~fDlIvsNPPy 192 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL---AGQKIDIIVSNPPY 192 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC---cCCCccEEEECCCC
Confidence 47999999999999999864 4666666544322112222223442 2 234555443 3 3788876631
Q ss_pred -----------hhccccccc---------chhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHH-hCCCee-E-EeecC
Q 027471 141 -----------LFSTIKKRC---------SLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVK-SLHWDV-R-MIYTN 197 (223)
Q Consensus 141 -----------lfs~~~~rC---------~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~-~l~W~~-~-~~~~~ 197 (223)
++.+....+ .+..++.++-+.|+|||++++--.......+..++. ...|.. . ..|-.
T Consensus 193 i~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~~~~~~~~~~D~~ 272 (284)
T TIGR00536 193 IDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYDVENGRDLN 272 (284)
T ss_pred CCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhcCCCceeEEecCCC
Confidence 111111111 244789999999999999999766666667777765 456643 2 33456
Q ss_pred CCeeEEEEEe
Q 027471 198 DNQGMLCVHK 207 (223)
Q Consensus 198 ~~e~~L~~~K 207 (223)
+.++++++++
T Consensus 273 g~~R~~~~~~ 282 (284)
T TIGR00536 273 GKERVVLGFY 282 (284)
T ss_pred CCceEEEEEe
Confidence 7889998875
No 79
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.27 E-value=1.5e-06 Score=84.24 Aligned_cols=134 Identities=12% Similarity=0.219 Sum_probs=83.8
Q ss_pred ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc---cc-ccccccCCCCC-cchhhhhhhh-
Q 027471 71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG---LY-HDWCESFNTYP-RTYDLLHADH- 140 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~-~dwce~f~tyP-rtyDllH~~~- 140 (223)
-.+|||+|||+|.++.+|+.. .|+.+.++|....-..+-+...|+-. ++ .|+ +...+ +.||+|-|.-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~~~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FENIEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hhhCcCCCccEEEECCC
Confidence 357999999999999887643 57777776543222222223335532 22 332 33344 6899988732
Q ss_pred ----------------------hhcccccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE--Eeec
Q 027471 141 ----------------------LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MIYT 196 (223)
Q Consensus 141 ----------------------lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~--~~~~ 196 (223)
+|........+..++.++.++|+|||.+++.-....-..+..++....|... ..|-
T Consensus 216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D~ 295 (506)
T PRK01544 216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDL 295 (506)
T ss_pred CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcCCCceEEEecC
Confidence 1111111122346888999999999999997555556778888777777643 3455
Q ss_pred CCCeeEEEEEe
Q 027471 197 NDNQGMLCVHK 207 (223)
Q Consensus 197 ~~~e~~L~~~K 207 (223)
.+.++++++.-
T Consensus 296 ~g~~R~v~~~~ 306 (506)
T PRK01544 296 QGHSRVILISP 306 (506)
T ss_pred CCCceEEEecc
Confidence 66788887753
No 80
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.27 E-value=2.2e-06 Score=70.94 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=81.0
Q ss_pred ccCccCCCCccchhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC--C--eEEEEecCCCCCCChh
Q 027471 33 EAGVYGKAAPEDFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL--K--VWVMNVVPIESPDTLP 108 (223)
Q Consensus 33 ~~g~~~~~~~~~f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~--V~vmnv~p~~~~~~l~ 108 (223)
.+|++ +...+..++..-.+.+.. . .-.+|||+|||+|-.+..++.+ . |+...+.|.... ..+
T Consensus 7 ~~gvF---s~~~~d~~t~lL~~~l~~-~---------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~-~a~ 72 (170)
T PF05175_consen 7 HPGVF---SPPRLDAGTRLLLDNLPK-H---------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALE-LAK 72 (170)
T ss_dssp ETTST---TTTSHHHHHHHHHHHHHH-H---------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHH-HHH
T ss_pred CCCee---CCCCCCHHHHHHHHHHhh-c---------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHH
Confidence 35553 344456777766666654 2 3456999999999999988876 3 555555433222 222
Q ss_pred hHH-hhCcccccccccccCCCCC-cchhhhhhhhhhcccc--cccchhHHHHhhhhcccCCcEEEE--eccHHHHHHHHH
Q 027471 109 IIY-ERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIK--KRCSLKAVVAEVDRILRPDGNLIL--RDDAETIVEVED 182 (223)
Q Consensus 109 ~i~-eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~--~rC~i~~vl~E~DRILRPgG~~ii--~D~~~~~~~i~~ 182 (223)
.+. ..|+-.+.--+|..|...+ ..||+|=|.-=|..-. ..+.+..++.+.-|+|+|||.+++ +.....-..+++
T Consensus 73 ~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~l~~ 152 (170)
T PF05175_consen 73 RNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERLLKE 152 (170)
T ss_dssp HHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHH
T ss_pred HHHHhcCccccccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHHHHH
Confidence 222 2343212122234455555 9999987764443222 234567999999999999998854 444444444555
Q ss_pred HHH
Q 027471 183 LVK 185 (223)
Q Consensus 183 i~~ 185 (223)
++.
T Consensus 153 ~f~ 155 (170)
T PF05175_consen 153 LFG 155 (170)
T ss_dssp HHS
T ss_pred hcC
Confidence 544
No 81
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.26 E-value=5.6e-07 Score=63.02 Aligned_cols=96 Identities=21% Similarity=0.298 Sum_probs=57.8
Q ss_pred EEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCc---ccccccccccCCC-CCcchhhhhhhhhhccc
Q 027471 73 NVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFNT-YPRTYDLLHADHLFSTI 145 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGL---i~~~~dwce~f~t-yPrtyDllH~~~lfs~~ 145 (223)
+++|+|||.|+++..+.+. .++++.+.+.... ..+...+.+. +-.++.=+..+.. -+..||++.+...++..
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALE-LARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHH-HHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999873 3444443322111 1110111121 1122211112222 34789999998877763
Q ss_pred ccccchhHHHHhhhhcccCCcEEEEe
Q 027471 146 KKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 146 ~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
.-....++..+.+.|||||.+++.
T Consensus 80 --~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 --VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred --hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 113458899999999999999986
No 82
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.25 E-value=4.3e-06 Score=73.94 Aligned_cols=132 Identities=13% Similarity=0.119 Sum_probs=70.7
Q ss_pred hhhccCCCCCCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhh
Q 027471 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHA 138 (223)
Q Consensus 60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~ 138 (223)
+++.|. +....-.|=|||||-|-.|+++.+. .|.-.++++.+.. +...-....|--+.+.|++-+
T Consensus 63 iI~~l~-~~~~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~-------------Vtacdia~vPL~~~svDv~Vf 128 (219)
T PF05148_consen 63 IIEWLK-KRPKSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPR-------------VTACDIANVPLEDESVDVAVF 128 (219)
T ss_dssp HHHHHC-TS-TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTT-------------EEES-TTS-S--TT-EEEEEE
T ss_pred HHHHHH-hcCCCEEEEECCCchHHHHHhcccCceEEEeeccCCCCC-------------EEEecCccCcCCCCceeEEEE
Confidence 444443 2233457999999999999887643 4666666665322 222111233334488998544
Q ss_pred hhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHHH---HHHHHHHHhCCCeeEEeecCCC-eeEEEEEecc
Q 027471 139 DHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETI---VEVEDLVKSLHWDVRMIYTNDN-QGMLCVHKTY 209 (223)
Q Consensus 139 ~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~---~~i~~i~~~l~W~~~~~~~~~~-e~~L~~~K~~ 209 (223)
. +|.- .-+..+++.|..|||||||.++|-+-.... +..-+.++++-.+....|..++ =.++..+|.-
T Consensus 129 c--LSLM--GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 129 C--LSLM--GTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR 199 (219)
T ss_dssp E--S-----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred E--hhhh--CCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence 3 1211 124569999999999999999999776654 4444567888888876664333 3334445543
No 83
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.24 E-value=9.5e-07 Score=74.00 Aligned_cols=85 Identities=19% Similarity=0.330 Sum_probs=58.1
Q ss_pred EEEeeCCchHHHHHHhhCC-C--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhcccccc
Q 027471 73 NVMDMRAVYGGFAAALKDL-K--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKR 148 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~-~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~r 148 (223)
+|||+|||.|.++.+|.+. + ++.+.+++ +.+..+.++|+--...|..+.++.++ ++||+|-|.+.|++..+
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~----~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d- 90 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEKQVRGYGIEIDQ----DGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRN- 90 (194)
T ss_pred EEEEeCCCCCHHHHHHHhccCCcEEEEeCCH----HHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcC-
Confidence 7999999999999999764 3 33343322 24555556675434444333344455 89999999999987765
Q ss_pred cchhHHHHhhhhcccC
Q 027471 149 CSLKAVVAEVDRILRP 164 (223)
Q Consensus 149 C~i~~vl~E~DRILRP 164 (223)
...+|.||-|++++
T Consensus 91 --~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 91 --PEEILDEMLRVGRH 104 (194)
T ss_pred --HHHHHHHHHHhCCe
Confidence 35788888777665
No 84
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.23 E-value=2e-06 Score=78.30 Aligned_cols=131 Identities=21% Similarity=0.306 Sum_probs=76.1
Q ss_pred eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcc---cccc-cccccCCCCC-cchhhhhhhhhh
Q 027471 72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLF---GLYH-DWCESFNTYP-RTYDLLHADHLF 142 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi---~~~~-dwce~f~tyP-rtyDllH~~~lf 142 (223)
.+|||+|||+|.++.+|+.. .|+.+.++|..-.-..+-+...|+- -+++ |+ +...| .+||+|-|.-=+
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~---~~~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDL---FAALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECch---hhhCCCCCccEEEECCCC
Confidence 57999999999999999765 4666666554333233333444652 2232 32 23344 689998875111
Q ss_pred -------------ccccc--------c-cchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEeecCCCe
Q 027471 143 -------------STIKK--------R-CSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQ 200 (223)
Q Consensus 143 -------------s~~~~--------r-C~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~~~~~e 200 (223)
.+... . -....++.++.+.|+|||.+++.-..+ ...+.+++....+.- ...+...+
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~-~~~~~~~~~~~~~~~-~~~~~~~~ 289 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS-RVHLEEAYPDVPFTW-LEFENGGD 289 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC-HHHHHHHHhhCCCEE-EEecCCCc
Confidence 11110 0 113478999999999999999963333 345777766543221 12233455
Q ss_pred eEEEEEe
Q 027471 201 GMLCVHK 207 (223)
Q Consensus 201 ~~L~~~K 207 (223)
+++++.+
T Consensus 290 ~~~~~~~ 296 (307)
T PRK11805 290 GVFLLTR 296 (307)
T ss_pred eEEEEEH
Confidence 6666554
No 85
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.22 E-value=8.9e-07 Score=78.80 Aligned_cols=125 Identities=15% Similarity=0.226 Sum_probs=75.9
Q ss_pred ccchhHhhhhHHHHHhhhhhhcc-C-CCCCCceEEEeeCCchHH----HHHHhhCC---------CeEEEEecCCCCCCC
Q 027471 42 PEDFTADYQHWKNVVSKSYLNGM-G-INWSFVRNVMDMRAVYGG----FAAALKDL---------KVWVMNVVPIESPDT 106 (223)
Q Consensus 42 ~~~f~~D~~~W~~~v~~~Y~~~l-~-i~~~~iRnvLDmgaG~Gg----FAA~L~~~---------~V~vmnv~p~~~~~~ 106 (223)
...|-.|..+|..-... .+..| . ...+.--+|+|+|||+|- .|-.|.+. .|+...+++. .
T Consensus 70 ~T~FfR~~~~~~~l~~~-vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~----~ 144 (264)
T smart00138 70 ETRFFRESKHFEALEEK-VLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK----A 144 (264)
T ss_pred CCcccCCcHHHHHHHHH-HhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH----H
Confidence 44566777778776654 33222 1 122334689999999994 55555432 3555555543 2
Q ss_pred hhhHHh--------hCccc--------------------------ccccccccCCCCC-cchhhhhhhhhhcccccccch
Q 027471 107 LPIIYE--------RGLFG--------------------------LYHDWCESFNTYP-RTYDLLHADHLFSTIKKRCSL 151 (223)
Q Consensus 107 l~~i~e--------RGLi~--------------------------~~~dwce~f~tyP-rtyDllH~~~lfs~~~~rC~i 151 (223)
++.+.+ |+++. ..||.++. .+| +.||+|.|.++|.+..+ -..
T Consensus 145 L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~--~~~~~~fD~I~crnvl~yf~~-~~~ 221 (264)
T smart00138 145 LEKARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAE--SPPLGDFDLIFCRNVLIYFDE-PTQ 221 (264)
T ss_pred HHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCC--CCccCCCCEEEechhHHhCCH-HHH
Confidence 222211 22211 22332221 133 89999999999887753 234
Q ss_pred hHHHHhhhhcccCCcEEEEeccH
Q 027471 152 KAVVAEVDRILRPDGNLILRDDA 174 (223)
Q Consensus 152 ~~vl~E~DRILRPgG~~ii~D~~ 174 (223)
..++.++.|+|+|||++++-...
T Consensus 222 ~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 222 RKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHHHHHHHhCCCeEEEEECcc
Confidence 58999999999999999997543
No 86
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.21 E-value=2.2e-06 Score=75.73 Aligned_cols=146 Identities=16% Similarity=0.136 Sum_probs=85.1
Q ss_pred HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHh-hCccccccc
Q 027471 47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYE-RGLFGLYHD 121 (223)
Q Consensus 47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~e-RGLi~~~~d 121 (223)
.+|+...+.+.+ ..+. ...-.+|||+|||+|.++-.|.+. .|+.+.+.|.... ..+.+++ .|.--...|
T Consensus 68 ~~Te~Lv~~~l~-~~~~----~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~-~A~~N~~~~~~~~~~~D 141 (251)
T TIGR03704 68 RRTEFLVDEAAA-LARP----RSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVR-CARRNLADAGGTVHEGD 141 (251)
T ss_pred ccHHHHHHHHHH-hhcc----cCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHH-HHHHHHHHcCCEEEEee
Confidence 466666655543 2221 122347999999999999887643 4666666544322 1122222 232113334
Q ss_pred ccccCCC-CCcchhhhhhhhhhcc-------------cccccc----------hhHHHHhhhhcccCCcEEEEeccHHHH
Q 027471 122 WCESFNT-YPRTYDLLHADHLFST-------------IKKRCS----------LKAVVAEVDRILRPDGNLILRDDAETI 177 (223)
Q Consensus 122 wce~f~t-yPrtyDllH~~~lfs~-------------~~~rC~----------i~~vl~E~DRILRPgG~~ii~D~~~~~ 177 (223)
+.+.++. +...||+|=++--+.. +..++. +..++..+.++|+|||.+++.-..+..
T Consensus 142 ~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~ 221 (251)
T TIGR03704 142 LYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQA 221 (251)
T ss_pred chhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchH
Confidence 4333322 2356888765432210 001111 347888899999999999997655666
Q ss_pred HHHHHHHHhCCCeeEEeecCC
Q 027471 178 VEVEDLVKSLHWDVRMIYTND 198 (223)
Q Consensus 178 ~~i~~i~~~l~W~~~~~~~~~ 198 (223)
..+..+++...|+..+..+++
T Consensus 222 ~~v~~~l~~~g~~~~~~~~~~ 242 (251)
T TIGR03704 222 PLAVEAFARAGLIARVASSEE 242 (251)
T ss_pred HHHHHHHHHCCCCceeeEccc
Confidence 788888888888877655443
No 87
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.21 E-value=3.6e-06 Score=80.65 Aligned_cols=134 Identities=11% Similarity=0.133 Sum_probs=84.2
Q ss_pred EEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-cc-ccccccccCCCCC--cchhhhhhhhhhcc
Q 027471 73 NVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FG-LYHDWCESFNTYP--RTYDLLHADHLFST 144 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~-~~~dwce~f~tyP--rtyDllH~~~lfs~ 144 (223)
+|||+|||+|.++.+|+.+ .|+.+.++|..-....+-+...|+ +- ...|+.+. .+| ..||+|-|+-=+..
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~--~l~~~~~FDLIVSNPPYI~ 331 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDT--DMPSEGKWDIIVSNPPYIE 331 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcc--ccccCCCccEEEECCCCCC
Confidence 7999999999999888643 466777765543322222223343 22 22343322 122 57999877432210
Q ss_pred ---------------------cccc-cchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE--EeecCCCe
Q 027471 145 ---------------------IKKR-CSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MIYTNDNQ 200 (223)
Q Consensus 145 ---------------------~~~r-C~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~--~~~~~~~e 200 (223)
..+. -.+..++-+..+.|+|||++++--..+.-+.++++++...|... ..|-.+.+
T Consensus 332 ~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~d 411 (423)
T PRK14966 332 NGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGFSGVETLPDLAGLD 411 (423)
T ss_pred cchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCCcEEEEEEcCCCCc
Confidence 0011 11337788888999999999986555666788888888878643 34556789
Q ss_pred eEEEEEec
Q 027471 201 GMLCVHKT 208 (223)
Q Consensus 201 ~~L~~~K~ 208 (223)
+++++++.
T Consensus 412 R~v~~~~~ 419 (423)
T PRK14966 412 RVTLGKYM 419 (423)
T ss_pred EEEEEEEh
Confidence 99998753
No 88
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.20 E-value=1.5e-06 Score=75.46 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=60.5
Q ss_pred eEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccc--------------cccccccCCCCC----c
Q 027471 72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGL--------------YHDWCESFNTYP----R 131 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~--------------~~dwce~f~tyP----r 131 (223)
.+|||+|||.|-.|.+|+++ .|+.+.++|..-. .+..+.|+... +.-.|..|-.++ .
T Consensus 36 ~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVE---QFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred CeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHH---HHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 58999999999999999999 6777888776322 11233444211 111333443322 3
Q ss_pred chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEE
Q 027471 132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLIL 170 (223)
Q Consensus 132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii 170 (223)
+||++-...+|.+.. ....+.++..|-|.|||||.+++
T Consensus 113 ~fD~i~D~~~~~~l~-~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 113 PVDAVYDRAALIALP-EEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred CcCEEEechhhccCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 566655554554442 33446899999999999997444
No 89
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.20 E-value=1.6e-06 Score=75.44 Aligned_cols=91 Identities=24% Similarity=0.377 Sum_probs=74.1
Q ss_pred eEEEeeCCchHHHHHHhhC-CCeEEEEecCCCC-CCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhcccccc
Q 027471 72 RNVMDMRAVYGGFAAALKD-LKVWVMNVVPIES-PDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKR 148 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~-~~V~vmnv~p~~~-~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~r 148 (223)
..|||+|||.|.+-++|.+ ++|.+.-+ +- ++.+..+.+||+.=+-+|.-+.++.|| .+||.+=++..+.+..+
T Consensus 15 srVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~- 90 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR- 90 (193)
T ss_pred CEEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-
Confidence 6899999999999999988 57877665 32 346888999999988888888899999 99999888866665543
Q ss_pred cchhHHHHhhhhcccCCcEEEEe
Q 027471 149 CSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 149 C~i~~vl~E~DRILRPgG~~ii~ 171 (223)
-+.+|.||=|| |...|++
T Consensus 91 --P~~vL~EmlRV---gr~~IVs 108 (193)
T PF07021_consen 91 --PDEVLEEMLRV---GRRAIVS 108 (193)
T ss_pred --HHHHHHHHHHh---cCeEEEE
Confidence 24899999655 7788888
No 90
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.19 E-value=9e-07 Score=76.24 Aligned_cols=98 Identities=20% Similarity=0.341 Sum_probs=69.8
Q ss_pred CCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCCcchhhhhhhh
Q 027471 66 INWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADH 140 (223)
Q Consensus 66 i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyPrtyDllH~~~ 140 (223)
.++...++|+|+|+|.|.++++++++ .++++.+ |..++.+.+..-+- +-+| -|.++|. +|++...+
T Consensus 96 ~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~v~~~~~~~~rv~~~~gd---~f~~~P~-~D~~~l~~ 166 (241)
T PF00891_consen 96 FDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-----PEVIEQAKEADRVEFVPGD---FFDPLPV-ADVYLLRH 166 (241)
T ss_dssp STTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE------HHHHCCHHHTTTEEEEES----TTTCCSS-ESEEEEES
T ss_pred ccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-----Hhhhhcccccccccccccc---HHhhhcc-ccceeeeh
Confidence 56778899999999999999999876 4555555 22233333322222 3332 4567889 99999999
Q ss_pred hhcccccccchhHHHHhhhhcccCC--cEEEEecc
Q 027471 141 LFSTIKKRCSLKAVVAEVDRILRPD--GNLILRDD 173 (223)
Q Consensus 141 lfs~~~~rC~i~~vl~E~DRILRPg--G~~ii~D~ 173 (223)
+++.|.+. ....+|.-+-+.|+|| |.++|-|.
T Consensus 167 vLh~~~d~-~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 167 VLHDWSDE-DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp SGGGS-HH-HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hhhhcchH-HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 99999862 2368999999999999 99999744
No 91
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.14 E-value=4.6e-06 Score=72.60 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=62.1
Q ss_pred eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccc--------------cccccccCCCC---C-c
Q 027471 72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGL--------------YHDWCESFNTY---P-R 131 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~--------------~~dwce~f~ty---P-r 131 (223)
.+|||.|||.|--|.+|++++ |+.+.++|.--. .+..++|+... +.-+|..|-.+ + .
T Consensus 39 ~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~---~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVE---QFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred CeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHH---HHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 489999999999999999995 566666655222 12346676432 12233333332 2 4
Q ss_pred chhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEE
Q 027471 132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLIL 170 (223)
Q Consensus 132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii 170 (223)
+||++-...+|.+.. ...-..++..+.++|+|||.+++
T Consensus 116 ~fd~v~D~~~~~~l~-~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALP-EEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCC-HHHHHHHHHHHHHHcCCCCeEEE
Confidence 677776666666553 23346899999999999996443
No 92
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.11 E-value=3.2e-06 Score=72.63 Aligned_cols=92 Identities=15% Similarity=0.251 Sum_probs=63.6
Q ss_pred ceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc-cccc-ccccccCCCCC-cchhhhhhhhhhc
Q 027471 71 VRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL-FGLY-HDWCESFNTYP-RTYDLLHADHLFS 143 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL-i~~~-~dwce~f~tyP-rtyDllH~~~lfs 143 (223)
...|||+|||+|.+...|.+. .|+.+.++|. .++.+.++-- +.++ .| .+..++ ++||+|-|.+++.
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~----~l~~A~~~~~~~~~~~~d---~~~~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEY----AVEKAKAYLPNINIIQGS---LFDPFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHH----HHHHHHhhCCCCcEEEee---ccCCCCCCCEEEEEECChhh
Confidence 457999999999999999765 3555665544 4444444311 1122 22 222355 8999999999998
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
|.. .-.+..++.|+.|++ ++++++.+
T Consensus 117 hl~-p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 117 HIN-PDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred hCC-HHHHHHHHHHHHhhc--CcEEEEEE
Confidence 875 335679999999998 57888864
No 93
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.10 E-value=1e-06 Score=79.43 Aligned_cols=120 Identities=22% Similarity=0.334 Sum_probs=89.6
Q ss_pred CCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCC--CCCcchhhhhhhh
Q 027471 66 INWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFN--TYPRTYDLLHADH 140 (223)
Q Consensus 66 i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~--tyPrtyDllH~~~ 140 (223)
.+.+..|.+||+|||+|-++-+|+++ .++-+.++ .|.+..+.|+|+-- +++-=...|. .=+.-||||-+..
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS----~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD 196 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDIS----ENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAAD 196 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHHhhccCCchh----HHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhh
Confidence 45667999999999999999999887 44444442 35889999999843 4443222355 3558899999999
Q ss_pred hhcccccccchhHHHHhhhhcccCCcEEEEe-----ccH-------H----HHHHHHHHHHhCCCeeE
Q 027471 141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILR-----DDA-------E----TIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~-----D~~-------~----~~~~i~~i~~~l~W~~~ 192 (223)
+|....+ ++.++.=+++.|.|||.|.|+ |.- + -...|...+.+--.++.
T Consensus 197 Vl~YlG~---Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i 261 (287)
T COG4976 197 VLPYLGA---LEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVI 261 (287)
T ss_pred HHHhhcc---hhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEE
Confidence 9998876 579999999999999999998 111 1 12467777777777765
No 94
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.09 E-value=1.8e-06 Score=77.71 Aligned_cols=113 Identities=20% Similarity=0.140 Sum_probs=74.6
Q ss_pred CCceEEEeeCCchHHHHHHh-hCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCC--------CCCcchhhhh
Q 027471 69 SFVRNVMDMRAVYGGFAAAL-KDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN--------TYPRTYDLLH 137 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L-~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~--------tyPrtyDllH 137 (223)
..-|.++|+|||.| +|+.. ++. .|....+++. +|++ ...+-.-.|++=--+++ -=+++.|||-
T Consensus 32 ~~h~~a~DvG~G~G-qa~~~iae~~k~VIatD~s~~----mL~~-a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~ 105 (261)
T KOG3010|consen 32 EGHRLAWDVGTGNG-QAARGIAEHYKEVIATDVSEA----MLKV-AKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLIT 105 (261)
T ss_pred CCcceEEEeccCCC-cchHHHHHhhhhheeecCCHH----HHHH-hhcCCCcccccCCccccccccccccCCCcceeeeh
Confidence 34569999999999 65555 444 6777666544 4442 23333334443222222 2379999999
Q ss_pred hhhhhcccccccchhHHHHhhhhcccCCc-EE---EEeccHHHHHHHHHHHHhCCCee
Q 027471 138 ADHLFSTIKKRCSLKAVVAEVDRILRPDG-NL---ILRDDAETIVEVEDLVKSLHWDV 191 (223)
Q Consensus 138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG-~~---ii~D~~~~~~~i~~i~~~l~W~~ 191 (223)
|+..|+ .|.++.++-++-|||||.| .+ ..+|+.....++.+++.+++|+.
T Consensus 106 ~Aqa~H----WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~~~ 159 (261)
T KOG3010|consen 106 AAQAVH----WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYDST 159 (261)
T ss_pred hhhhHH----hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhhcc
Confidence 986554 7889999999999999888 22 22455555677777777777764
No 95
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.07 E-value=1.8e-06 Score=73.94 Aligned_cols=112 Identities=17% Similarity=0.222 Sum_probs=72.5
Q ss_pred EEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC----CC-cchhhhhhhhhhc
Q 027471 73 NVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT----YP-RTYDLLHADHLFS 143 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t----yP-rtyDllH~~~lfs 143 (223)
.+||+|||.|.|..+|+.+ ++..+-+...-.......+..+||-.+..=.|++... ++ .+.|-||.. |.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~--FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN--FP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--S-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--CC
Confidence 8999999999999999765 3444444332223467778888986644433344432 44 788887753 43
Q ss_pred -------ccccccch-hHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhC
Q 027471 144 -------TIKKRCSL-KAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSL 187 (223)
Q Consensus 144 -------~~~~rC~i-~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l 187 (223)
|.+ |..+ +.+|.++.|+|+|||.+.+. |..+..+.+.+.+...
T Consensus 98 DPWpK~rH~k-rRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 98 DPWPKKRHHK-RRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp ----SGGGGG-GSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred CCCcccchhh-hhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 222 3333 38899999999999999885 7777777777666554
No 96
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.06 E-value=5.6e-06 Score=75.70 Aligned_cols=128 Identities=21% Similarity=0.204 Sum_probs=78.5
Q ss_pred eEEEeeCCchHHH--HHHhhC-CCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhccccc
Q 027471 72 RNVMDMRAVYGGF--AAALKD-LKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKK 147 (223)
Q Consensus 72 RnvLDmgaG~GgF--AA~L~~-~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~ 147 (223)
.+|||+|||+|=. ||++.. +.|..+.+-|.-...+.+-+..-|+-.-+. .+ .....+ ..||+|=|.-+..
T Consensus 163 ~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~-v~-~~~~~~~~~~dlvvANI~~~---- 236 (295)
T PF06325_consen 163 KRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIE-VS-LSEDLVEGKFDLVVANILAD---- 236 (295)
T ss_dssp SEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEE-ES-CTSCTCCS-EEEEEEES-HH----
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEE-EE-EecccccccCCEEEECCCHH----
Confidence 5899999999964 344433 368888886664444445455556544221 11 222344 8999987752221
Q ss_pred ccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471 148 RCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 208 (223)
Q Consensus 148 rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~ 208 (223)
.+..++-++.+.|+|||++|++--.. ..+.+.+.++. .++......++.=.-|+++|+
T Consensus 237 --vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~Kk 295 (295)
T PF06325_consen 237 --VLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ-GFELVEEREEGEWVALVFKKK 295 (295)
T ss_dssp --HHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE-
T ss_pred --HHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEeC
Confidence 23356777899999999999994433 34566666676 777755545566677777774
No 97
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.01 E-value=4.5e-06 Score=70.74 Aligned_cols=98 Identities=15% Similarity=0.217 Sum_probs=57.3
Q ss_pred hhccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCC--cchh
Q 027471 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP--RTYD 134 (223)
Q Consensus 61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyP--rtyD 134 (223)
+..+.+.. -.+|||+|||+|.+++.|.+. .|..+...|.......+.....|+-. +.+. ..+..++ ..||
T Consensus 71 ~~~l~~~~--~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~--d~~~~~~~~~~fD 146 (212)
T PRK00312 71 TELLELKP--GDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG--DGWKGWPAYAPFD 146 (212)
T ss_pred HHhcCCCC--CCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC--CcccCCCcCCCcC
Confidence 33444433 357999999999999877665 35555443222111111122225532 2221 1233444 7899
Q ss_pred hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
+|.++..+ ..+.-++-+.|+|||.+++.
T Consensus 147 ~I~~~~~~---------~~~~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 147 RILVTAAA---------PEIPRALLEQLKEGGILVAP 174 (212)
T ss_pred EEEEccCc---------hhhhHHHHHhcCCCcEEEEE
Confidence 99887433 34455677899999999986
No 98
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=2.4e-05 Score=72.10 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=77.7
Q ss_pred CceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC--cchhhhhhhhhhcc
Q 027471 70 FVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP--RTYDLLHADHLFST 144 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP--rtyDllH~~~lfs~ 144 (223)
.-++|||+|||+|=+|-+.++.+ |....+-|.--.-..+-+.--|+..+.+.=+-...+.+ +.||+|-|.= +.
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-LA- 239 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-LA- 239 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh-hH-
Confidence 57899999999999887777774 55566644322112221222222222222122333355 5999988751 11
Q ss_pred cccccchhHHHHhhhhcccCCcEEEEeccHHH-HHHHHHHHHhCCCeeEEeecCCCeeEEEE
Q 027471 145 IKKRCSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVRMIYTNDNQGMLCV 205 (223)
Q Consensus 145 ~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~-~~~i~~i~~~l~W~~~~~~~~~~e~~L~~ 205 (223)
-.+..+.-++-|.|||||++|++--... .+.+..-+.+-.|++...... .|.+.+.
T Consensus 240 ----~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~-~eW~~i~ 296 (300)
T COG2264 240 ----EVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER-EEWVAIV 296 (300)
T ss_pred ----HHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec-CCEEEEE
Confidence 1233677788999999999999965443 466777787778887644333 4444433
No 99
>PRK04457 spermidine synthase; Provisional
Probab=97.95 E-value=4.7e-05 Score=67.85 Aligned_cols=135 Identities=13% Similarity=0.137 Sum_probs=76.0
Q ss_pred CCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-Ccc------ccc-ccccccCCCCCcchhhh
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-GLF------GLY-HDWCESFNTYPRTYDLL 136 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-GLi------~~~-~dwce~f~tyPrtyDll 136 (223)
...++|||+|||.|.++.++.+. .|+++-+.|. .++.+.+. ++. -++ .|.-+-+...+.+||+|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~----vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQ----VIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHH----HHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEE
Confidence 34678999999999999988765 3555554333 33333332 211 122 22111233456789998
Q ss_pred hhhhhhcccc--cccchhHHHHhhhhcccCCcEEEEe---ccHHHHHHHHHHHHhCCCeeEEee-cCCCeeEEEEEec
Q 027471 137 HADHLFSTIK--KRCSLKAVVAEVDRILRPDGNLILR---DDAETIVEVEDLVKSLHWDVRMIY-TNDNQGMLCVHKT 208 (223)
Q Consensus 137 H~~~lfs~~~--~rC~i~~vl~E~DRILRPgG~~ii~---D~~~~~~~i~~i~~~l~W~~~~~~-~~~~e~~L~~~K~ 208 (223)
=++ .|+... .......++.++-++|+|||.+++- .+......++.+-+.+.-.+.... .++...+++|.|.
T Consensus 141 ~~D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~~~~~~~N~v~~a~~~ 217 (262)
T PRK04457 141 LVD-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLELPAESHGNVAVFAFKS 217 (262)
T ss_pred EEe-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEEecCCCccEEEEEECC
Confidence 765 454221 1222468999999999999999983 222222333444333332222222 2334678888773
No 100
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.95 E-value=5.4e-06 Score=74.33 Aligned_cols=96 Identities=14% Similarity=0.214 Sum_probs=66.7
Q ss_pred eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc-ccccccccCCC----CC-cchhhhhhhhhhc
Q 027471 72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNT----YP-RTYDLLHADHLFS 143 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~t----yP-rtyDllH~~~lfs 143 (223)
-.|||+|||-|.++..|+..| |+....++. .++++-.+.+-. +..|+- .+.. .. .+||+|-|..+..
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~----~I~~Ak~ha~e~gv~i~y~-~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGASVTGIDASEK----PIEVAKLHALESGVNIDYR-QATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCCeeEEecCChH----HHHHHHHhhhhccccccch-hhhHHHHHhcCCCccEEEEhhHHH
Confidence 369999999999999999987 333444332 455554333322 222210 1111 22 6899999999999
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDAE 175 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~ 175 (223)
|..+- +.++.+..+.|||||.+++++...
T Consensus 136 Hv~dp---~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 136 HVPDP---ESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ccCCH---HHHHHHHHHHcCCCcEEEEecccc
Confidence 98874 479999999999999999995543
No 101
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=4.8e-05 Score=68.67 Aligned_cols=155 Identities=16% Similarity=0.183 Sum_probs=93.1
Q ss_pred hHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCccccccc
Q 027471 46 TADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHD 121 (223)
Q Consensus 46 ~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~d 121 (223)
..||..+...+.. -.... .. +|+|+|||+|.-|.+|+.. .|+...++|.--.-...-+...|+..++.-
T Consensus 93 r~dTe~Lve~~l~-~~~~~----~~--~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~ 165 (280)
T COG2890 93 RPDTELLVEAALA-LLLQL----DK--RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVV 165 (280)
T ss_pred CCchHHHHHHHHH-hhhhc----CC--cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEE
Confidence 5788888777642 12211 11 8999999999999999877 356666655321112222233354221111
Q ss_pred ccccCCCCCcchhhhhhh----------------------hhhcccccccchhHHHHhhhhcccCCcEEEEeccHHHHHH
Q 027471 122 WCESFNTYPRTYDLLHAD----------------------HLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVE 179 (223)
Q Consensus 122 wce~f~tyPrtyDllH~~----------------------~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~ 179 (223)
-+.-|+..+..||+|=|. .+++.....--+..++-+..++|+|||++++.-.......
T Consensus 166 ~~dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~ 245 (280)
T COG2890 166 QSDLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEA 245 (280)
T ss_pred eeecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHH
Confidence 012355555678875442 1222221112344889999999999999999877777788
Q ss_pred HHHHHHhCCC-ee--EEeecCCCeeEEEEEe
Q 027471 180 VEDLVKSLHW-DV--RMIYTNDNQGMLCVHK 207 (223)
Q Consensus 180 i~~i~~~l~W-~~--~~~~~~~~e~~L~~~K 207 (223)
+++++....+ .. ...+-.+.+++.++++
T Consensus 246 v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~ 276 (280)
T COG2890 246 VKALFEDTGFFEIVETLKDLFGRDRVVLAKL 276 (280)
T ss_pred HHHHHHhcCCceEEEEEecCCCceEEEEEEe
Confidence 8888888884 32 1223345677777665
No 102
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=97.85 E-value=1.4e-05 Score=72.87 Aligned_cols=117 Identities=13% Similarity=0.115 Sum_probs=66.8
Q ss_pred ceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhccc-
Q 027471 71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFSTI- 145 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs~~- 145 (223)
-..|||.+||+|+|...+... .|....+.+........-+...|+.. +++.-...++..+.+||+|-++--|...
T Consensus 183 g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPyg~~~ 262 (329)
T TIGR01177 183 GDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPYGRST 262 (329)
T ss_pred cCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCCcCcc
Confidence 347999999999996544443 45555554432221222222335543 2221111222223789998886333221
Q ss_pred --c---cccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCC
Q 027471 146 --K---KRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHW 189 (223)
Q Consensus 146 --~---~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W 189 (223)
. ..+....+|.|+.|+|+|||++++--+... .++++++.--|
T Consensus 263 ~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~ 309 (329)
T TIGR01177 263 TAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR 309 (329)
T ss_pred cccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc
Confidence 1 113356899999999999999987644332 34456677666
No 103
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=97.85 E-value=2.1e-05 Score=74.45 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=65.5
Q ss_pred ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--c-cccccccCCCCCcchhhhhhhh--
Q 027471 71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--L-YHDWCESFNTYPRTYDLLHADH-- 140 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~-~~dwce~f~tyPrtyDllH~~~-- 140 (223)
-.+|||+|||.|+++.++++. .|+++.+.+.......+.+...|+-. + ..|..+....++++||+|-++-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc 330 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDAPC 330 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcCCC
Confidence 357999999999999887653 35666664432221222233345532 2 2332221223457899976542
Q ss_pred ----hhcccc------cccc-------hhHHHHhhhhcccCCcEEEEec----cHHHHHHHHHHHHhC
Q 027471 141 ----LFSTIK------KRCS-------LKAVVAEVDRILRPDGNLILRD----DAETIVEVEDLVKSL 187 (223)
Q Consensus 141 ----lfs~~~------~rC~-------i~~vl~E~DRILRPgG~~ii~D----~~~~~~~i~~i~~~l 187 (223)
++.+.. .... -..+|.++-|+|||||.++++. ..+.-..++.+++..
T Consensus 331 sg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~ 398 (444)
T PRK14902 331 SGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEH 398 (444)
T ss_pred CCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhC
Confidence 221100 0001 1268999999999999999862 223344556655543
No 104
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.82 E-value=1e-05 Score=73.00 Aligned_cols=94 Identities=11% Similarity=0.142 Sum_probs=58.4
Q ss_pred eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhh---Cccc-----ccccccccCCCCCcc-----h
Q 027471 72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYER---GLFG-----LYHDWCESFNTYPRT-----Y 133 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eR---GLi~-----~~~dwce~f~tyPrt-----y 133 (223)
.+|||+|||+|.++..|.+. .|+.+.+++. .|+.+.++ ..++ +..|-++.++ ++.. .
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~----mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~-~~~~~~~~~~ 139 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISAD----ALKESAAALAADYPQLEVHGICADFTQPLA-LPPEPAAGRR 139 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHH----HHHHHHHHHHhhCCCceEEEEEEcccchhh-hhcccccCCe
Confidence 57999999999999888765 3555666554 33333332 2222 2333332222 2322 2
Q ss_pred hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 134 DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
+++.++..|.+.. +-....+|-++-+.|+|||.|+|.
T Consensus 140 ~~~~~gs~~~~~~-~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 140 LGFFPGSTIGNFT-PEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEEecccccCCC-HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3455555666554 233468999999999999999986
No 105
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.82 E-value=0.00011 Score=67.53 Aligned_cols=108 Identities=18% Similarity=0.264 Sum_probs=72.5
Q ss_pred ceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccc--cCCCCCcchhhhh-hhhhhccccc
Q 027471 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCE--SFNTYPRTYDLLH-ADHLFSTIKK 147 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce--~f~tyPrtyDllH-~~~lfs~~~~ 147 (223)
--.|-|||||-|-.|. =...+|..|.+++++.. +.. |. ..|--++|.|++- |-.|.
T Consensus 181 ~~vIaD~GCGEakiA~-~~~~kV~SfDL~a~~~~-------------V~~--cDm~~vPl~d~svDvaV~CLSLM----- 239 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIAS-SERHKVHSFDLVAVNER-------------VIA--CDMRNVPLEDESVDVAVFCLSLM----- 239 (325)
T ss_pred ceEEEecccchhhhhh-ccccceeeeeeecCCCc-------------eee--ccccCCcCccCcccEEEeeHhhh-----
Confidence 3458899999887765 23348999999888664 111 11 2333458999854 32221
Q ss_pred ccchhHHHHhhhhcccCCcEEEEeccHHHHH---HHHHHHHhCCCeeEEeecCCC
Q 027471 148 RCSLKAVVAEVDRILRPDGNLILRDDAETIV---EVEDLVKSLHWDVRMIYTNDN 199 (223)
Q Consensus 148 rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~---~i~~i~~~l~W~~~~~~~~~~ 199 (223)
.-++.+++.|..|||+|||.++|-+-..... .+.+-+++|..+....+-.++
T Consensus 240 gtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~d~~n~ 294 (325)
T KOG3045|consen 240 GTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHKDVSNK 294 (325)
T ss_pred cccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeehhhhcc
Confidence 2356799999999999999999986655433 344457888888766554333
No 106
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.78 E-value=3.8e-05 Score=71.16 Aligned_cols=97 Identities=15% Similarity=0.220 Sum_probs=71.1
Q ss_pred CceEEEeeCCchHHHHHHhhCCCe-EEEEecCCCCCCChhhHHhhCcccc---cccc---cccCCCCCcchhhhhhhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESPDTLPIIYERGLFGL---YHDW---CESFNTYPRTYDLLHADHLF 142 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~~V-~vmnv~p~~~~~~l~~i~eRGLi~~---~~dw---ce~f~tyPrtyDllH~~~lf 142 (223)
+-|.|||+|||-|-+.=.|+.++- .|+-+-|..-. ..|+-+-+-++|. ++-. =|.++. .++||+|-|.+++
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf-~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLF-YLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHH-HHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeeh
Confidence 578999999999999999998865 56666554332 5666666666541 1100 123344 5899999999998
Q ss_pred cccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 143 STIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
=|-.+- -..|.++-..|||||.+|+.
T Consensus 193 YHrr~P---l~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 193 YHRRSP---LDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred hccCCH---HHHHHHHHHhhCCCCEEEEE
Confidence 775542 48899999999999999986
No 107
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.76 E-value=3.7e-05 Score=72.52 Aligned_cols=119 Identities=13% Similarity=0.163 Sum_probs=66.9
Q ss_pred cCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHh-hCccccc--ccccccC--CC--CCcc
Q 027471 64 MGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYE-RGLFGLY--HDWCESF--NT--YPRT 132 (223)
Q Consensus 64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~e-RGLi~~~--~dwce~f--~t--yPrt 132 (223)
|++..+ .+|||||||.|+++.++++. .|+.+.+.+..-. .++...+ .|+-..+ .+ +..+ +. -+.+
T Consensus 234 L~~~~g--~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~-~~~~n~~r~g~~~~v~~~~-~d~~~~~~~~~~~~ 309 (426)
T TIGR00563 234 LAPQNE--ETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLK-RVYENLKRLGLTIKAETKD-GDGRGPSQWAENEQ 309 (426)
T ss_pred hCCCCC--CeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEec-cccccccccccccc
Confidence 444444 68999999999999887754 4666666444222 2222333 3553111 11 1122 11 1378
Q ss_pred hhhhhhh------hhhccccc--c----------c-chhHHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHHh
Q 027471 133 YDLLHAD------HLFSTIKK--R----------C-SLKAVVAEVDRILRPDGNLILR----DDAETIVEVEDLVKS 186 (223)
Q Consensus 133 yDllH~~------~lfs~~~~--r----------C-~i~~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~~ 186 (223)
||.|-++ +++....+ . . .-..+|.++-|+|||||.++++ .+.+.-..|+.++++
T Consensus 310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 9998753 33332111 0 0 0137999999999999999997 233334445555443
No 108
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.70 E-value=7e-06 Score=62.14 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=58.5
Q ss_pred eEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCc---ccccccccccCC-CCC-cchhhhhhhhhhc
Q 027471 72 RNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGL---FGLYHDWCESFN-TYP-RTYDLLHADHLFS 143 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGL---i~~~~dwce~f~-tyP-rtyDllH~~~lfs 143 (223)
-+|||+|||.|.|+.++.+.. +..+.+.|.-..-....+-..|+ +.+++.-...+. .++ +.||+|=++--|.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 369999999999998887654 55555544322111111222222 223332112222 244 8899988877776
Q ss_pred ccc-----cccchhHHHHhhhhcccCCcEEEEe
Q 027471 144 TIK-----KRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 144 ~~~-----~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
... .+-....++.++.|+|||||.+++-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~ 114 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI 114 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 331 1224558899999999999999874
No 109
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.70 E-value=4.6e-05 Score=72.14 Aligned_cols=134 Identities=15% Similarity=0.273 Sum_probs=72.9
Q ss_pred eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC-------CCcchhhhhhh
Q 027471 72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-------YPRTYDLLHAD 139 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t-------yPrtyDllH~~ 139 (223)
-+|||+|||.|+++.+|++. .|+++.+.+.......+.+..-|+-. +.--|..... .+.+||.|=++
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~~~~~~~~~~fD~Vl~D 332 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLLELKPQWRGYFDRILLD 332 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcccccccccccCCEEEEe
Confidence 57999999999999887654 35555554432221222222335422 1111222222 23689986643
Q ss_pred ------hhhccccc------ccc-------hhHHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHHhC-CCeeEE--
Q 027471 140 ------HLFSTIKK------RCS-------LKAVVAEVDRILRPDGNLILR----DDAETIVEVEDLVKSL-HWDVRM-- 193 (223)
Q Consensus 140 ------~lfs~~~~------rC~-------i~~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~~l-~W~~~~-- 193 (223)
+.+.+..+ ... -..+|.++-|+|||||.++++ .+.+....++.++++. .|+...
T Consensus 333 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~~~~~~~~ 412 (434)
T PRK14901 333 APCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPDWKLEPPK 412 (434)
T ss_pred CCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCCcEecCCC
Confidence 22221110 001 238899999999999999987 3334556676666654 344321
Q ss_pred ----eecCCCeeEEEEE
Q 027471 194 ----IYTNDNQGMLCVH 206 (223)
Q Consensus 194 ----~~~~~~e~~L~~~ 206 (223)
.+..+.+.+++|+
T Consensus 413 ~~~~P~~~~~dGfF~a~ 429 (434)
T PRK14901 413 QKIWPHRQDGDGFFMAV 429 (434)
T ss_pred CccCCCCCCCCcEEEEE
Confidence 0112346777764
No 110
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.69 E-value=5.3e-05 Score=71.62 Aligned_cols=120 Identities=17% Similarity=0.239 Sum_probs=67.2
Q ss_pred cCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhh-Ccc-c-ccccccccCCCCC-cchhh
Q 027471 64 MGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYER-GLF-G-LYHDWCESFNTYP-RTYDL 135 (223)
Q Consensus 64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eR-GLi-~-~~~dwce~f~tyP-rtyDl 135 (223)
|++..+ ..|||+|||.|+++..+.++ .|+.+.+.+.... .++-.+++ |+- - +.+|-++....++ .+||.
T Consensus 240 l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~-~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 240 LAPQNG--ERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLE-RVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred cCCCCC--CEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence 344443 57999999999999888765 3555655544322 22223333 432 1 2223222111233 78999
Q ss_pred hhhhhhhccc-----------c-cc-------cchhHHHHhhhhcccCCcEEEEec----cHHHHHHHHHHHHh
Q 027471 136 LHADHLFSTI-----------K-KR-------CSLKAVVAEVDRILRPDGNLILRD----DAETIVEVEDLVKS 186 (223)
Q Consensus 136 lH~~~lfs~~-----------~-~r-------C~i~~vl~E~DRILRPgG~~ii~D----~~~~~~~i~~i~~~ 186 (223)
|=++--++.. . .. .....+|.++-|+|||||.++++. ..+....++.++++
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 8743222211 0 00 112378999999999999999873 33444555555544
No 111
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=97.69 E-value=7.5e-05 Score=70.93 Aligned_cols=115 Identities=17% Similarity=0.258 Sum_probs=66.8
Q ss_pred ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCC-C-cchhhhhhh----
Q 027471 71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY-P-RTYDLLHAD---- 139 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty-P-rtyDllH~~---- 139 (223)
-..|||+|||.|+++.+|.+. .|+.+.+.+.......+.+...|+-. +.--|....++ + .+||.|=++
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~~~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSFSPEEQPDAILLDAPCT 329 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCcccccccCCCCCEEEEcCCCC
Confidence 367999999999987766542 46667665554332333344456521 11112233332 3 679997642
Q ss_pred --hhhccc-----c-cccch-------hHHHHhhhhcccCCcEEEEec----cHHHHHHHHHHHHh
Q 027471 140 --HLFSTI-----K-KRCSL-------KAVVAEVDRILRPDGNLILRD----DAETIVEVEDLVKS 186 (223)
Q Consensus 140 --~lfs~~-----~-~rC~i-------~~vl~E~DRILRPgG~~ii~D----~~~~~~~i~~i~~~ 186 (223)
+.+... . ....+ ..+|.++-|+|||||.++++. +.+.-..++.++++
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHh
Confidence 222111 0 00111 268999999999999999983 33445566666664
No 112
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.69 E-value=4.3e-05 Score=67.81 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=61.6
Q ss_pred eEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhcc
Q 027471 72 RNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFST 144 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs~ 144 (223)
.+|||++||.|+++..|++. .|+.+.+.+.......+-+...|+.. +++.-...++.....||.|-++--.|.
T Consensus 73 ~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 73 ERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred CEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 56999999999998776543 35555444332221222222335422 232212223333356998765422221
Q ss_pred c------cc------cc-------chhHHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHHh
Q 027471 145 I------KK------RC-------SLKAVVAEVDRILRPDGNLILR----DDAETIVEVEDLVKS 186 (223)
Q Consensus 145 ~------~~------rC-------~i~~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~~ 186 (223)
. .+ .- .-..+|.++-|+|||||.++++ ...+.-..++.+++.
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 1 00 00 0126999999999999999998 233333444555443
No 113
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00015 Score=66.84 Aligned_cols=127 Identities=20% Similarity=0.343 Sum_probs=77.6
Q ss_pred EEEeeCCchHHHHHHhhCCC----eEEEEec--CCCCC-CChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhc
Q 027471 73 NVMDMRAVYGGFAAALKDLK----VWVMNVV--PIESP-DTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFS 143 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~~----V~vmnv~--p~~~~-~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs 143 (223)
+|+|+|||||-.++.|+++. |+...+. .++.. .++.. -++-+ ++++ ..++.-...||+|=|.-=|+
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~---N~~~~~~v~~s--~~~~~v~~kfd~IisNPPfh 235 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA---NGVENTEVWAS--NLYEPVEGKFDLIISNPPFH 235 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH---cCCCccEEEEe--cccccccccccEEEeCCCcc
Confidence 89999999999999998873 3332321 11111 12222 33333 3332 23333335899976666665
Q ss_pred ccccc--cchhHHHHhhhhcccCCcEEEEecc--HHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471 144 TIKKR--CSLKAVVAEVDRILRPDGNLILRDD--AETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 208 (223)
Q Consensus 144 ~~~~r--C~i~~vl~E~DRILRPgG~~ii~D~--~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~ 208 (223)
.-+.- -..+.++.+.-+-|++||.++|--+ ..+-.+++++.. ++...-.+++-+||-++|.
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg----~v~~la~~~gf~Vl~a~k~ 300 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG----NVEVLAKNGGFKVLRAKKA 300 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC----CEEEEEeCCCEEEEEEecC
Confidence 43321 1123789999999999999988644 334556666555 5555555667788877763
No 114
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.63 E-value=6.3e-05 Score=73.05 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=73.4
Q ss_pred CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccC----CCCC-cchhhhhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESF----NTYP-RTYDLLHADH 140 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f----~tyP-rtyDllH~~~ 140 (223)
.-..+||+|||.|.|.+.++.+ ++..+-+.....-..+..+.++||-.+.. .|..+ ..|| ++.|-+|..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~-~~~~~~~~~~~~~~~sv~~i~i~- 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLL-FPNNLDLILNDLPNNSLDGIYIL- 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEE-EcCCHHHHHHhcCcccccEEEEE-
Confidence 5788999999999999999876 44555543322223556677788754322 33333 2266 888887764
Q ss_pred hhc-------ccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHH
Q 027471 141 LFS-------TIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDL 183 (223)
Q Consensus 141 lfs-------~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i 183 (223)
|. |.+.|=--+..|.++.|+|+|||.+.+. |..+..+.+...
T Consensus 425 -FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~ 474 (506)
T PRK01544 425 -FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIEL 474 (506)
T ss_pred -CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHH
Confidence 54 2233333348999999999999999875 666665554444
No 115
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.62 E-value=5.1e-05 Score=70.08 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=58.0
Q ss_pred hccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC---CCcch
Q 027471 62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT---YPRTY 133 (223)
Q Consensus 62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t---yPrty 133 (223)
+.+.++.+ .+|||+|||+|.+++.|.+. .|+.+.+.|.......+.+.+.|+-. ++-.++.... ....|
T Consensus 74 ~~L~i~~g--~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~~~~~~~f 150 (322)
T PRK13943 74 EWVGLDKG--MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYGVPEFAPY 150 (322)
T ss_pred HhcCCCCC--CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhcccccCCc
Confidence 44555544 47999999999999988753 25656555432221223333445522 1212233222 12679
Q ss_pred hhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 134 DLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 134 DllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
|+|.++. .+..+...+-|.|+|||.+++-
T Consensus 151 D~Ii~~~---------g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 151 DVIFVTV---------GVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred cEEEECC---------chHHhHHHHHHhcCCCCEEEEE
Confidence 9988762 2234445567899999998885
No 116
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.60 E-value=5.7e-05 Score=71.85 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=68.3
Q ss_pred cCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCC-Ccchh
Q 027471 64 MGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTY-PRTYD 134 (223)
Q Consensus 64 l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~ty-PrtyD 134 (223)
+++..+ .+||||+||.||.+.++++. .|+.+.+.+..-....+.+...|+-. ...|.. .++.+ +.+||
T Consensus 233 l~~~~g--~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~-~l~~~~~~~fD 309 (431)
T PRK14903 233 MELEPG--LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAE-RLTEYVQDTFD 309 (431)
T ss_pred hCCCCC--CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchh-hhhhhhhccCC
Confidence 344444 57999999999988776643 46777665543332333333446532 223322 23323 37899
Q ss_pred hhhhhhhhccccc---c--------------c--chhHHHHhhhhcccCCcEEEEe----ccHHHHHHHHHHHH
Q 027471 135 LLHADHLFSTIKK---R--------------C--SLKAVVAEVDRILRPDGNLILR----DDAETIVEVEDLVK 185 (223)
Q Consensus 135 llH~~~lfs~~~~---r--------------C--~i~~vl~E~DRILRPgG~~ii~----D~~~~~~~i~~i~~ 185 (223)
.|=++---|.... + + .-..+|.+.-+.|||||.++++ .+.+.-..|+.+++
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~ 383 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVY 383 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHH
Confidence 9765322221110 0 0 0126788999999999999997 33444455666554
No 117
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=97.58 E-value=9.7e-05 Score=66.51 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=84.8
Q ss_pred hhccCCCCCCceEEEeeCCchHHHHHHhhCCC-eEE-EEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhh
Q 027471 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDLK-VWV-MNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLL 136 (223)
Q Consensus 61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~-V~v-mnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDll 136 (223)
+++|.+..+.-+-+||+|||+|--++.|.+.+ +|+ |.++|. .|.++.||-+=| +..|-.|-+++=|.|||-+
T Consensus 41 LELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSps----ML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ 116 (270)
T KOG1541|consen 41 LELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPS----MLEQAVERELEGDLILCDMGEGLPFRPGTFDGV 116 (270)
T ss_pred HHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHH----HHHHHHHhhhhcCeeeeecCCCCCCCCCccceE
Confidence 45667777788999999999999999999985 555 777766 666677655544 6677778899899999974
Q ss_pred hhhhhhc---ccccccc-----hhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCe
Q 027471 137 HADHLFS---TIKKRCS-----LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWD 190 (223)
Q Consensus 137 H~~~lfs---~~~~rC~-----i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~ 190 (223)
-+-+... +-...|. +-.++--.-..|.+|+..++.=-.+..+.++.|...=.|.
T Consensus 117 ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~a 178 (270)
T KOG1541|consen 117 ISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKA 178 (270)
T ss_pred EEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhh
Confidence 3322111 0011122 2355666889999999999995444444444444444443
No 118
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.56 E-value=0.00012 Score=64.24 Aligned_cols=97 Identities=12% Similarity=0.151 Sum_probs=58.3
Q ss_pred CCceEEEeeCCchHHH----HHHhhCC-CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCC----C-Ccchh
Q 027471 69 SFVRNVMDMRAVYGGF----AAALKDL-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNT----Y-PRTYD 134 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgF----AA~L~~~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~t----y-PrtyD 134 (223)
..-++|||+|||+|.- |+++... .|+.+-..|.......+.+.+-|+-. ...|..+.++. . ..+||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 4467899999988863 3343322 56666665543332444445556532 22333333332 2 36899
Q ss_pred hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
+|-++.- .-....++.++-|.|||||.+++.
T Consensus 147 ~VfiDa~------k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDAD------KPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECCC------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9877521 123446788889999999999986
No 119
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.51 E-value=0.00018 Score=64.79 Aligned_cols=123 Identities=15% Similarity=0.241 Sum_probs=82.0
Q ss_pred CceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCC---CChhhHHhhCcccccccccccCCC-CC-cchhhhhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESP---DTLPIIYERGLFGLYHDWCESFNT-YP-RTYDLLHADH 140 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~---~~l~~i~eRGLi~~~~dwce~f~t-yP-rtyDllH~~~ 140 (223)
....|||+|||.|..+=+|+++ .|..+-+.+..+. ++++.+-=..-+-++++-=..|.. .+ .+||+|-|.-
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 3889999999999988888887 3444444333321 122221111113344431111211 23 4689977753
Q ss_pred hhc---------------ccccccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE
Q 027471 141 LFS---------------TIKKRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 141 lfs---------------~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~ 192 (223)
=|- ++.-.|.+++++.=.-++|+|||++.+--..+.+..+-.++++++|...
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~~~k 190 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPK 190 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHHHHHHHHhcCCCce
Confidence 332 2234588889999999999999999999999999999999999999875
No 120
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.49 E-value=0.00031 Score=49.06 Aligned_cols=93 Identities=24% Similarity=0.306 Sum_probs=54.4
Q ss_pred EEeeCCchHH--HHHHhhCCCeEEEE--ecCCCCCCChhhHHh----hCc---cccccccccc-CCCCC-cchhhhhhhh
Q 027471 74 VMDMRAVYGG--FAAALKDLKVWVMN--VVPIESPDTLPIIYE----RGL---FGLYHDWCES-FNTYP-RTYDLLHADH 140 (223)
Q Consensus 74 vLDmgaG~Gg--FAA~L~~~~V~vmn--v~p~~~~~~l~~i~e----RGL---i~~~~dwce~-f~tyP-rtyDllH~~~ 140 (223)
++|+|||.|. +.+.+...+..+.. ..+. .+..... .++ -....+.... ++.-+ .+||++ +..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPE----MLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISL 126 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHH----HHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eee
Confidence 9999999998 56666665433333 2222 2222111 111 2233332221 22222 389998 664
Q ss_pred hhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471 141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA 174 (223)
Q Consensus 141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~ 174 (223)
...++.. ...++.++.|+|+|+|.+++.+..
T Consensus 127 ~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 127 LVLHLLP---PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred eehhcCC---HHHHHHHHHHhcCCCcEEEEEecc
Confidence 3333332 579999999999999999998554
No 121
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=6.8e-05 Score=66.93 Aligned_cols=98 Identities=19% Similarity=0.220 Sum_probs=62.5
Q ss_pred ceEEEeeCCchHHHHHHhhC-CCeEEEEecCCCCCC--ChhhHHhhCc--cc-ccccccccCCCCC-cchhhhhhhhhhc
Q 027471 71 VRNVMDMRAVYGGFAAALKD-LKVWVMNVVPIESPD--TLPIIYERGL--FG-LYHDWCESFNTYP-RTYDLLHADHLFS 143 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~-~~V~vmnv~p~~~~~--~l~~i~eRGL--i~-~~~dwce~f~tyP-rtyDllH~~~lfs 143 (223)
=--||.+|||+|.-=-++-. .++.|--+-|..+-+ +..-+.|.-- +. .++.-.|.++.-+ .+||.|-|..++
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL- 155 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL- 155 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE-
Confidence 33589999999986555554 355555555543311 2222222211 11 3444456777655 999998887443
Q ss_pred ccccccchh---HHHHhhhhcccCCcEEEEeccH
Q 027471 144 TIKKRCSLK---AVVAEVDRILRPDGNLILRDDA 174 (223)
Q Consensus 144 ~~~~rC~i~---~vl~E~DRILRPgG~~ii~D~~ 174 (223)
|+.+ ..|-|+-|+|||||.+|+-+..
T Consensus 156 -----CSve~~~k~L~e~~rlLRpgG~iifiEHv 184 (252)
T KOG4300|consen 156 -----CSVEDPVKQLNEVRRLLRPGGRIIFIEHV 184 (252)
T ss_pred -----eccCCHHHHHHHHHHhcCCCcEEEEEecc
Confidence 3333 8999999999999999998553
No 122
>PRK00811 spermidine synthase; Provisional
Probab=97.43 E-value=0.00017 Score=64.83 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=57.0
Q ss_pred CCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHh------hCc-----cccccccccc-CCCCCcchhh
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYE------RGL-----FGLYHDWCES-FNTYPRTYDL 135 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~e------RGL-----i~~~~dwce~-f~tyPrtyDl 135 (223)
..-++|||+|||.|+.++.+.++ ++.-+-++..+.. .++++.+ .|+ +-+++.-+.. +.+-+++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~-vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER-VVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH-HHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 45679999999999999999887 4432222222221 2222222 122 1122221111 2223478999
Q ss_pred hhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEe
Q 027471 136 LHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 136 lH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
|=++ ++..+.. .---+.++.++.|+|+|||.+++.
T Consensus 154 Ii~D-~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 154 IIVD-STDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EEEC-CCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 8765 2222210 001136778899999999999985
No 123
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.41 E-value=0.00015 Score=64.15 Aligned_cols=111 Identities=20% Similarity=0.245 Sum_probs=73.1
Q ss_pred eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCc--cccc-ccccccCCCCC--cchhhhhhhhhh
Q 027471 72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGL--FGLY-HDWCESFNTYP--RTYDLLHADHLF 142 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGL--i~~~-~dwce~f~tyP--rtyDllH~~~lf 142 (223)
..+|++|||.|.|-+.|+.+ ++.-|-+-....-..+..+-+.|| +.++ +|--+-|..++ ++.|-|+-. |
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--F 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE--C
Confidence 57999999999999999987 333333322222237788899999 3333 33223444444 488887754 5
Q ss_pred c-------ccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHH-HHHHH
Q 027471 143 S-------TIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVE-VEDLV 184 (223)
Q Consensus 143 s-------~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~-i~~i~ 184 (223)
. |.+.|=.-+..|.++.|+|+|||.+.+. |.....+. +....
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~ 178 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEWMMLEVL 178 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHHHHHHHH
Confidence 5 3334433348999999999999999985 55555555 55443
No 124
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.37 E-value=0.00019 Score=65.18 Aligned_cols=90 Identities=22% Similarity=0.425 Sum_probs=67.5
Q ss_pred CceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc-ccccccccCCCCCcchhhhhhhhhhcccc
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG-LYHDWCESFNTYPRTYDLLHADHLFSTIK 146 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~-~~~dwce~f~tyPrtyDllH~~~lfs~~~ 146 (223)
+..++||+|||-|+--+.|+.. .|.+=-+++. .+-...+||.-- -..||-+ =+..||+|-|-+|+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~----Mr~rL~~kg~~vl~~~~w~~----~~~~fDvIscLNvLD--- 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPP----MRWRLSKKGFTVLDIDDWQQ----TDFKFDVISCLNVLD--- 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHH----HHHHHHhCCCeEEehhhhhc----cCCceEEEeehhhhh---
Confidence 5778999999999999999775 5555444333 455567788842 2333432 256799999987775
Q ss_pred cccchh-HHHHhhhhcccCCcEEEEe
Q 027471 147 KRCSLK-AVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 147 ~rC~i~-~vl~E~DRILRPgG~~ii~ 171 (223)
||.-+ .+|-+|.+.|+|+|.+|+.
T Consensus 163 -Rc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 163 -RCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred -ccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 88766 7889999999999999997
No 125
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.32 E-value=0.0011 Score=58.84 Aligned_cols=135 Identities=14% Similarity=0.097 Sum_probs=69.9
Q ss_pred CCceEEEeeCCchHHHHHHhhCCC----eEEEEecCCCCCCChhhHHhh-----C-c----ccccc-cccccCCCCCcch
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDLK----VWVMNVVPIESPDTLPIIYER-----G-L----FGLYH-DWCESFNTYPRTY 133 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~~----V~vmnv~p~~~~~~l~~i~eR-----G-L----i~~~~-dwce~f~tyPrty 133 (223)
.+-++||++|||.|+++..+.+++ |+++-+.|. .++.+.+. | + +-+++ |--+-+...+++|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~----vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~y 146 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEK----VIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTF 146 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHH----HHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCc
Confidence 345699999999999999887764 333333222 22222111 1 0 11111 1111112246889
Q ss_pred hhhhhhhhhccc-ccccchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCeeEEee------cCCCee
Q 027471 134 DLLHADHLFSTI-KKRCSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDVRMIY------TNDNQG 201 (223)
Q Consensus 134 DllH~~~lfs~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~~~~~------~~~~e~ 201 (223)
|+|=++...... ....-...++..+-|+|+|||.+++... .+....+.+.++..=-.+.... ..+.-.
T Consensus 147 DvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g~~~ 226 (270)
T TIGR00417 147 DVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSGLWT 226 (270)
T ss_pred cEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccchhE
Confidence 998665321111 1111124677889999999999998622 2223333333333222222111 124467
Q ss_pred EEEEEe
Q 027471 202 MLCVHK 207 (223)
Q Consensus 202 ~L~~~K 207 (223)
+++|.|
T Consensus 227 ~~~as~ 232 (270)
T TIGR00417 227 FTIGSK 232 (270)
T ss_pred EEEEEC
Confidence 889988
No 126
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.31 E-value=0.00013 Score=60.00 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=40.9
Q ss_pred ccccccccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH
Q 027471 118 LYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA 174 (223)
Q Consensus 118 ~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~ 174 (223)
.++.-++.++.-+++||+|-+...+.+..++ ..+|.|+.|+|||||.+++.|-.
T Consensus 30 ~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~---~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 30 WIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR---LRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred EEEechhhCCCCCCCeeEEEecchhhcCCCH---HHHHHHHHHHcCcCeEEEEEECC
Confidence 3333345665444899999998877777654 58999999999999999987543
No 127
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.30 E-value=0.00014 Score=73.10 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=70.5
Q ss_pred eEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHhhCcc----c-ccccccccCCCCCcchhhhhhhhh-h
Q 027471 72 RNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYERGLF----G-LYHDWCESFNTYPRTYDLLHADHL-F 142 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~eRGLi----~-~~~dwce~f~tyPrtyDllH~~~l-f 142 (223)
++|||++||+|+|+-+++..+ |+.+.+++..-....+-+..-|+- - +..|..+-+..+.++||+|=++-= |
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f 619 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPTF 619 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCCC
Confidence 689999999999999998875 444444333222122222223442 1 222322222224678999876411 1
Q ss_pred ccccc-------ccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEe
Q 027471 143 STIKK-------RCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMI 194 (223)
Q Consensus 143 s~~~~-------rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~ 194 (223)
..... .-....++...-|+|+|||.+++...........+.+..-.+.+...
T Consensus 620 ~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i 678 (702)
T PRK11783 620 SNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEI 678 (702)
T ss_pred CCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEE
Confidence 11000 11234678888999999999999755554444455666667776543
No 128
>PLN03075 nicotianamine synthase; Provisional
Probab=97.25 E-value=0.00025 Score=65.23 Aligned_cols=133 Identities=11% Similarity=0.135 Sum_probs=76.8
Q ss_pred CceEEEeeCCchHHHHHHhhC----CC--eEEEEecCCCCCCChhhHH-hhCccc----ccccccccCCCC--Ccchhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKD----LK--VWVMNVVPIESPDTLPIIY-ERGLFG----LYHDWCESFNTY--PRTYDLL 136 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~----~~--V~vmnv~p~~~~~~l~~i~-eRGLi~----~~~dwce~f~ty--PrtyDll 136 (223)
.-++|+|+|||-|++.+.+.. .+ ++.+...|.......+.+. +.|+-. ..+|. +... ...||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da---~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV---MDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch---hhcccccCCcCEE
Confidence 568999999998877554332 23 4444444443332333332 355522 22332 2223 2789999
Q ss_pred hhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccH---HHH-HHHHH-HHHhCCCeeEEeecCC---CeeEEEEEec
Q 027471 137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDA---ETI-VEVED-LVKSLHWDVRMIYTND---NQGMLCVHKT 208 (223)
Q Consensus 137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~---~~~-~~i~~-i~~~l~W~~~~~~~~~---~e~~L~~~K~ 208 (223)
-|. ++..+. +-.-+.++..+-|.|||||+++++--. ..+ ..+.. ..+ .|++....+.. -.-+++++|.
T Consensus 200 F~~-ALi~~d-k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~--gf~~~~~~~P~~~v~Nsvi~~r~~ 275 (296)
T PLN03075 200 FLA-ALVGMD-KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLR--GFEVLSVFHPTDEVINSVIIARKP 275 (296)
T ss_pred EEe-cccccc-cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCC--CeEEEEEECCCCCceeeEEEEEee
Confidence 998 554442 122359999999999999999999421 111 11111 122 77765443322 3678899996
Q ss_pred c
Q 027471 209 Y 209 (223)
Q Consensus 209 ~ 209 (223)
-
T Consensus 276 ~ 276 (296)
T PLN03075 276 G 276 (296)
T ss_pred c
Confidence 5
No 129
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.22 E-value=0.00047 Score=63.99 Aligned_cols=130 Identities=14% Similarity=0.235 Sum_probs=67.1
Q ss_pred hhHHHHH-hhhhhhccCCCCCCceEEEeeCCchHHH-HHHhhCC--CeEEEEecCCCCCCChhhHH-------hhC----
Q 027471 50 QHWKNVV-SKSYLNGMGINWSFVRNVMDMRAVYGGF-AAALKDL--KVWVMNVVPIESPDTLPIIY-------ERG---- 114 (223)
Q Consensus 50 ~~W~~~v-~~~Y~~~l~i~~~~iRnvLDmgaG~GgF-AA~L~~~--~V~vmnv~p~~~~~~l~~i~-------eRG---- 114 (223)
+.|.+.+ .+-|.+.+.- ...-.+||||+||=||= --+...+ .++...+++..-.+..+... .+.
T Consensus 42 NNwvKs~LI~~~~~~~~~-~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~ 120 (331)
T PF03291_consen 42 NNWVKSVLIQKYAKKVKQ-NRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFD 120 (331)
T ss_dssp HHHHHHHHHHHHCHCCCC-TTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEEC
T ss_pred hHHHHHHHHHHHHHhhhc-cCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccccccccc
Confidence 4464432 2225554432 22678999999999993 3333322 34445665543222222110 011
Q ss_pred ccc-ccccccccCCC-----CC---cchhhhhhhhhhccc-ccccchhHHHHhhhhcccCCcEEEEecc--HHHHHHHHH
Q 027471 115 LFG-LYHDWCESFNT-----YP---RTYDLLHADHLFSTI-KKRCSLKAVVAEVDRILRPDGNLILRDD--AETIVEVED 182 (223)
Q Consensus 115 Li~-~~~dwce~f~t-----yP---rtyDllH~~~lfs~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~--~~~~~~i~~ 182 (223)
... .+. +..|+. |+ +.||+|-|...|+.. ...-....+|.-+..-|||||+||.+-+ ..++.++++
T Consensus 121 f~a~f~~--~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~ 198 (331)
T PF03291_consen 121 FIAEFIA--ADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLRE 198 (331)
T ss_dssp CEEEEEE--STTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC
T ss_pred chhheec--cccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHh
Confidence 122 111 223433 33 599999988666533 2333445799999999999999999933 334344443
No 130
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.21 E-value=0.00032 Score=64.57 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=56.1
Q ss_pred eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhh----Ccc---cccccc-cccCCCCCcchhhhhhhhh
Q 027471 72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYER----GLF---GLYHDW-CESFNTYPRTYDLLHADHL 141 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eR----GLi---~~~~dw-ce~f~tyPrtyDllH~~~l 141 (223)
.+|||+|||+|.++..|.+++ |+.+.+++.. ++.+.+| +.- ....++ |..+...+.+||+|-|..+
T Consensus 146 ~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~m----l~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 146 VTVCDAGCGTGSLAIPLALEGAIVSASDISAAM----VAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CEEEEecCCCCHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 489999999999999999875 6666666553 3333332 110 011111 2234445789999999888
Q ss_pred hcccccccchhHHHHhhhhcccCCcEEE
Q 027471 142 FSTIKKRCSLKAVVAEVDRILRPDGNLI 169 (223)
Q Consensus 142 fs~~~~rC~i~~vl~E~DRILRPgG~~i 169 (223)
+.|+.+. .+..++..+.++ .+||.+|
T Consensus 222 L~H~p~~-~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 222 LIHYPQD-KADGMIAHLASL-AEKRLII 247 (315)
T ss_pred EEecCHH-HHHHHHHHHHhh-cCCEEEE
Confidence 8776542 233455666654 4555544
No 131
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=97.13 E-value=0.00058 Score=64.81 Aligned_cols=113 Identities=18% Similarity=0.214 Sum_probs=64.8
Q ss_pred eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCccc---ccccccccCCC--CC-cchhhhhhhhhhc
Q 027471 72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNT--YP-RTYDLLHADHLFS 143 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~t--yP-rtyDllH~~~lfs 143 (223)
..|||+|||+|.|+.+|+++. |..+.+++.......+-+...|+-. ...|+-+.+.. ++ .+||+|-++
T Consensus 299 ~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d---- 374 (443)
T PRK13168 299 DRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD---- 374 (443)
T ss_pred CEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC----
Confidence 579999999999999998874 4445544443222222222335422 22232222222 32 678987665
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEeccHHH-HHHHHHHHHhCCCeeE
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVR 192 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~-~~~i~~i~~~l~W~~~ 192 (223)
.+|..+..++..+-+ |.|++.++++=+... ...++.+.+ --|++.
T Consensus 375 --PPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~-~gY~l~ 420 (443)
T PRK13168 375 --PPRAGAAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE-AGYRLK 420 (443)
T ss_pred --cCCcChHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh-CCcEEE
Confidence 234444566655555 599999999955554 455665543 236553
No 132
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.08 E-value=0.00031 Score=63.61 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=68.8
Q ss_pred EEEeeCCchHHHHHHhhCC----CeEEE--EecCCCC---CCChhhHHhhCcccccccccccCCC---CCcchhhhhhhh
Q 027471 73 NVMDMRAVYGGFAAALKDL----KVWVM--NVVPIES---PDTLPIIYERGLFGLYHDWCESFNT---YPRTYDLLHADH 140 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~----~V~vm--nv~p~~~---~~~l~~i~eRGLi~~~~dwce~f~t---yPrtyDllH~~~ 140 (223)
.+|.+|||.|.---=|.+- ++.++ ..+|..- ..+.+..-.|. -+.++|.|.+=.. .+.++|++-+-.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~-~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRV-EAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhh-cccceeccchhccCCCCcCccceEEEEE
Confidence 8999999999865555443 24444 3444422 11222222333 3367777665433 349999999998
Q ss_pred hhcccccccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471 141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE 175 (223)
Q Consensus 141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~ 175 (223)
+||...+ -.+..+|-.+.|+|+|||.+++||--.
T Consensus 153 vLSAi~p-ek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 153 VLSAIHP-EKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred EEeccCh-HHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 9998764 357899999999999999999996543
No 133
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.03 E-value=0.0032 Score=58.33 Aligned_cols=158 Identities=15% Similarity=0.130 Sum_probs=95.0
Q ss_pred HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecCCCC---CCChhhHHhhCccccc
Q 027471 47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVPIES---PDTLPIIYERGLFGLY 119 (223)
Q Consensus 47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~---~~~l~~i~eRGLi~~~ 119 (223)
-+|+.|.+.|-. -++... +..-..++|+|||.|..+-.|... -|+++.++++-- .++.+..--.|-+.+.
T Consensus 128 pETEE~V~~Vid-~~~~~~--~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~ 204 (328)
T KOG2904|consen 128 PETEEWVEAVID-ALNNSE--HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVI 204 (328)
T ss_pred ccHHHHHHHHHH-HHhhhh--hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEE
Confidence 467888887765 232222 222228999999999998888765 456677776642 3466667777888877
Q ss_pred cc--ccccCCCCC---cchhhhhhh--hhhcc-----------cc--------cccc--hhHHHHhhhhcccCCcEEEEe
Q 027471 120 HD--WCESFNTYP---RTYDLLHAD--HLFST-----------IK--------KRCS--LKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 120 ~d--wce~f~tyP---rtyDllH~~--~lfs~-----------~~--------~rC~--i~~vl~E~DRILRPgG~~ii~ 171 (223)
|. =.+.+.++| ..+|++-|. .+++. +. ..|. +-.+..=.-|.|+|||++++.
T Consensus 205 ~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 205 HNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred ecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 54 123555566 888987663 12221 00 1111 115666678999999999997
Q ss_pred cc-----HHHHHHHHHH-HHhCCCeeEEe-ecCCCeeEEEEEe
Q 027471 172 DD-----AETIVEVEDL-VKSLHWDVRMI-YTNDNQGMLCVHK 207 (223)
Q Consensus 172 D~-----~~~~~~i~~i-~~~l~W~~~~~-~~~~~e~~L~~~K 207 (223)
-. ...+..+... .+.--|.+.+. |-.+.+++++..+
T Consensus 285 ~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 285 LVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIHR 327 (328)
T ss_pred ecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEEEe
Confidence 22 2233443333 33334444433 3346788887665
No 134
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.02 E-value=0.0007 Score=60.02 Aligned_cols=122 Identities=16% Similarity=0.233 Sum_probs=73.1
Q ss_pred CCceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHH-----hhCcccccccccccCCC-CC--cchhhhhhhh
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIY-----ERGLFGLYHDWCESFNT-YP--RTYDLLHADH 140 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~-----eRGLi~~~~dwce~f~t-yP--rtyDllH~~~ 140 (223)
.....+||.|||.|-....|+-.-.-.+.++....+ .++.+. +.+-++.+. |..+.. -| ..||+|++.-
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~-Fl~~a~~~l~~~~~~v~~~~--~~gLQ~f~P~~~~YDlIW~QW 130 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEK-FLEQAKEYLGKDNPRVGEFY--CVGLQDFTPEEGKYDLIWIQW 130 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HH-HHHHHHHHTCCGGCCEEEEE--ES-GGG----TT-EEEEEEES
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHH-HHHHHHHHhcccCCCcceEE--ecCHhhccCCCCcEeEEEehH
Confidence 468899999999999998886664444555433332 555555 333344222 334444 34 7999999997
Q ss_pred hhcccccccchhHHHHhhhhcccCCcEEEEeccHH----------------HHHHHHHHHHhCCCeeEEe
Q 027471 141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE----------------TIVEVEDLVKSLHWDVRMI 194 (223)
Q Consensus 141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~----------------~~~~i~~i~~~l~W~~~~~ 194 (223)
+..|+.+. .+..+|.-.-.-|||+|.+++-|+.. ....+.+|.+.=...+...
T Consensus 131 ~lghLTD~-dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 131 CLGHLTDE-DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp -GGGS-HH-HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred hhccCCHH-HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 77777763 34466777778899999999973321 1467777877777776543
No 135
>PLN02476 O-methyltransferase
Probab=97.01 E-value=0.0011 Score=60.48 Aligned_cols=132 Identities=11% Similarity=0.071 Sum_probs=78.7
Q ss_pred CCceEEEeeCCchHHHHHHhhC----C-CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCC-----Ccchh
Q 027471 69 SFVRNVMDMRAVYGGFAAALKD----L-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTY-----PRTYD 134 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~----~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~ty-----PrtyD 134 (223)
..-++||++|+++|..+.+|+. . .|+++-..|.......+.+.+-|+-. ...|-.+.++.+ +.+||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3468999999999999888865 2 35666554433333556666677742 222222333333 36899
Q ss_pred hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc---------H---HHHHHHHHH----HHhCCCeeEEeecCC
Q 027471 135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD---------A---ETIVEVEDL----VKSLHWDVRMIYTND 198 (223)
Q Consensus 135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~---------~---~~~~~i~~i----~~~l~W~~~~~~~~~ 198 (223)
++-.+. ++-....++...-+.|||||.+++.+. . .....++++ .+.=+++..+.. -
T Consensus 197 ~VFIDa------~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~llP--i 268 (278)
T PLN02476 197 FAFVDA------DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISMVP--I 268 (278)
T ss_pred EEEECC------CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEEEE--e
Confidence 876652 122345777788899999999999722 1 011233333 334445554332 2
Q ss_pred CeeEEEEEec
Q 027471 199 NQGMLCVHKT 208 (223)
Q Consensus 199 ~e~~L~~~K~ 208 (223)
.+++++++|+
T Consensus 269 gDGl~i~~K~ 278 (278)
T PLN02476 269 GDGMTICRKR 278 (278)
T ss_pred CCeeEEEEEC
Confidence 4678888874
No 136
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.99 E-value=0.00025 Score=64.82 Aligned_cols=103 Identities=13% Similarity=0.157 Sum_probs=67.3
Q ss_pred ceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCC-----CCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhc
Q 027471 71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIES-----PDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFS 143 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~-----~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs 143 (223)
-++|||+|||.|-..--|+..+ |..+.+++..- +....-..+++..=.+---|...+..-..||.|-|+.++.
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevle 169 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLE 169 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHH
Confidence 3789999999999988888875 34344332211 1112222333321111122344444555599999999999
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEeccHHH
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILRDDAET 176 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~ 176 (223)
|..+- +.++.-+-+.|+|||.+++++-...
T Consensus 170 HV~dp---~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 170 HVKDP---QEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred HHhCH---HHHHHHHHHHhCCCCceEeeehhhh
Confidence 98864 4788889999999999999966544
No 137
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=96.96 E-value=0.0002 Score=62.39 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=53.3
Q ss_pred hhhccCCCCCCceEEEeeCCchHHHHHHhhCC----C-eEEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCC--
Q 027471 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL----K-VWVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYP-- 130 (223)
Q Consensus 60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~----~-V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyP-- 130 (223)
-++.|.+++| -+|||+|||+|=++|.|... + |..+-..|.-.....+.+.+.|+-. +++. ....-+|
T Consensus 64 ~l~~L~l~pg--~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~g--dg~~g~~~~ 139 (209)
T PF01135_consen 64 MLEALDLKPG--DRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVG--DGSEGWPEE 139 (209)
T ss_dssp HHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES---GGGTTGGG
T ss_pred HHHHHhcCCC--CEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEc--chhhccccC
Confidence 4456667766 48999999999999888753 2 3333332221122233333345532 2331 1222354
Q ss_pred cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
..||.||++. ..+.+-.++=.-|||||.+|+-
T Consensus 140 apfD~I~v~~---------a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 140 APFDRIIVTA---------AVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp -SEEEEEESS---------BBSS--HHHHHTEEEEEEEEEE
T ss_pred CCcCEEEEee---------ccchHHHHHHHhcCCCcEEEEE
Confidence 6799999972 2233334444559999999984
No 138
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.93 E-value=0.0032 Score=55.32 Aligned_cols=132 Identities=22% Similarity=0.276 Sum_probs=86.0
Q ss_pred EEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCC-C----hhhHHhhCccc----cccccccc-------CCCCCcchhh
Q 027471 73 NVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPD-T----LPIIYERGLFG----LYHDWCES-------FNTYPRTYDL 135 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~-~----l~~i~eRGLi~----~~~dwce~-------f~tyPrtyDl 135 (223)
.||.+|||+|--|++++.. +-. .--|.|... . ..-+.+.|+.. +.-|-+.. -+.++.+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l--~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHL--TWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCC--EEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 8999999999988888776 321 234555432 2 22345667643 33333322 2235689999
Q ss_pred hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe------------------------cc---HHHHHHHHHHHHhCC
Q 027471 136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR------------------------DD---AETIVEVEDLVKSLH 188 (223)
Q Consensus 136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~------------------------D~---~~~~~~i~~i~~~l~ 188 (223)
|-|.++++...-.| .+-++.+..|+|+|||.+++- |+ ..-++.|..++.+-.
T Consensus 106 i~~~N~lHI~p~~~-~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 106 IFCINMLHISPWSA-VEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred eeehhHHHhcCHHH-HHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 99998887666444 579999999999999999986 11 001356778888777
Q ss_pred CeeEE-eecCCCeeEEEEEe
Q 027471 189 WDVRM-IYTNDNQGMLCVHK 207 (223)
Q Consensus 189 W~~~~-~~~~~~e~~L~~~K 207 (223)
..... .+=--..++||.+|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 76531 11123568888876
No 139
>PRK01581 speE spermidine synthase; Validated
Probab=96.93 E-value=0.004 Score=59.17 Aligned_cols=141 Identities=11% Similarity=0.150 Sum_probs=75.4
Q ss_pred CCCceEEEeeCCchHHHHHHhhCCC-eEEEEecCCCCCCChhhHHh--------hC-c----cc-ccccccccCCCCCcc
Q 027471 68 WSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESPDTLPIIYE--------RG-L----FG-LYHDWCESFNTYPRT 132 (223)
Q Consensus 68 ~~~iRnvLDmgaG~GgFAA~L~~~~-V~vmnv~p~~~~~~l~~i~e--------RG-L----i~-~~~dwce~f~tyPrt 132 (223)
...-++||++|||.|+.++.+.+.+ +--+-++..+. +.++++.+ +| + +- .+.|--+-+..-++.
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDp-eVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDG-SMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCH-HHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence 3456799999999999999888763 32222233222 13333332 11 1 11 122222222233478
Q ss_pred hhhhhhhhhhcccc---cccchhHHHHhhhhcccCCcEEEEeccHH-----HHHHHHHHHHhCCCeeEEee----c-CCC
Q 027471 133 YDLLHADHLFSTIK---KRCSLKAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLVKSLHWDVRMIY----T-NDN 199 (223)
Q Consensus 133 yDllH~~~lfs~~~---~rC~i~~vl~E~DRILRPgG~~ii~D~~~-----~~~~i~~i~~~l~W~~~~~~----~-~~~ 199 (223)
||+|=++. +.... .+.--..++..+.|.|+|||.++...... ....+.+.++...-.+.... + ...
T Consensus 227 YDVIIvDl-~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~ 305 (374)
T PRK01581 227 YDVIIIDF-PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTD 305 (374)
T ss_pred ccEEEEcC-CCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCc
Confidence 99988762 21111 11111367889999999999998874422 22233444444444443221 1 123
Q ss_pred eeEEEEEeccc
Q 027471 200 QGMLCVHKTYW 210 (223)
Q Consensus 200 e~~L~~~K~~w 210 (223)
-.+.+|.|.-.
T Consensus 306 WgF~~as~~~~ 316 (374)
T PRK01581 306 WGFHIAANSAY 316 (374)
T ss_pred eEEEEEeCCcc
Confidence 67888887644
No 140
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.92 E-value=0.00058 Score=60.41 Aligned_cols=110 Identities=19% Similarity=0.258 Sum_probs=61.2
Q ss_pred CceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCC---ChhhHHhhCcccc-cccccccCCCCCcchhhhhhhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPD---TLPIIYERGLFGL-YHDWCESFNTYPRTYDLLHADHLF 142 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~---~l~~i~eRGLi~~-~~dwce~f~tyPrtyDllH~~~lf 142 (223)
.-.+|||+|||+|+|+..|.+++ |+.+.+.+.+-.. .-+.+-..+...+ +.+|.+..+.+ -+||+.-++
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~-~~~DvsfiS--- 150 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF-ATFDVSFIS--- 150 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc-eeeeEEEee---
Confidence 45689999999999999998884 6667765532110 0000000122111 23444432222 256654443
Q ss_pred cccccccchhHHHHhhhhcccCCcEEEEe-------------------ccHH---HHHHHHHHHHhCCCeeE
Q 027471 143 STIKKRCSLKAVVAEVDRILRPDGNLILR-------------------DDAE---TIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 143 s~~~~rC~i~~vl~E~DRILRPgG~~ii~-------------------D~~~---~~~~i~~i~~~l~W~~~ 192 (223)
.+ .+|-.+.+.|+| |.+++- |... .+.++...+..+.|.+.
T Consensus 151 -----~~---~~l~~i~~~l~~-~~~~~L~KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (228)
T TIGR00478 151 -----LI---SILPELDLLLNP-NDLTLLFKPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK 213 (228)
T ss_pred -----hH---hHHHHHHHHhCc-CeEEEEcChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence 22 467778888888 776654 3222 24455555677777764
No 141
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=96.84 E-value=0.0009 Score=58.13 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=77.3
Q ss_pred CCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCC-----Ccchh
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTY-----PRTYD 134 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~ty-----PrtyD 134 (223)
.+-++||.+|+++|--|.+|++- .|+++...|....-..+.+..-|+-. ...|..+.+++. +++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 35789999999999877777632 56777665544433555556667733 334444555542 26899
Q ss_pred hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHH------------HHHHHHHH----HHhCCCeeEEeecCC
Q 027471 135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAE------------TIVEVEDL----VKSLHWDVRMIYTND 198 (223)
Q Consensus 135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~------------~~~~i~~i----~~~l~W~~~~~~~~~ 198 (223)
+|-.+.- +-....++..+-+.|||||.+|+++..- ....++++ .+.=+.+..+. .-
T Consensus 124 ~VFiDa~------K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~ll--pi 195 (205)
T PF01596_consen 124 FVFIDAD------KRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVLL--PI 195 (205)
T ss_dssp EEEEEST------GGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEEE--CS
T ss_pred EEEEccc------ccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEEE--Ee
Confidence 9876621 2223356666669999999999983311 11123333 33334444332 23
Q ss_pred CeeEEEEEec
Q 027471 199 NQGMLCVHKT 208 (223)
Q Consensus 199 ~e~~L~~~K~ 208 (223)
.+++++++|+
T Consensus 196 gdGl~l~~K~ 205 (205)
T PF01596_consen 196 GDGLTLARKR 205 (205)
T ss_dssp TTEEEEEEE-
T ss_pred CCeeEEEEEC
Confidence 5788899884
No 142
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.83 E-value=0.0008 Score=56.24 Aligned_cols=119 Identities=20% Similarity=0.316 Sum_probs=62.5
Q ss_pred hhhhHHHH--Hhhhhhhcc-----CCCCCCceEEEeeCCchH--HHHHHhh--CCCeEEEEecCCCCCCChhhHHhhCc-
Q 027471 48 DYQHWKNV--VSKSYLNGM-----GINWSFVRNVMDMRAVYG--GFAAALK--DLKVWVMNVVPIESPDTLPIIYERGL- 115 (223)
Q Consensus 48 D~~~W~~~--v~~~Y~~~l-----~i~~~~iRnvLDmgaG~G--gFAA~L~--~~~V~vmnv~p~~~~~~l~~i~eRGL- 115 (223)
....|... ..+ |+... ......-++||++|||.| |.+++.. ...|++-..-+ .-+.++.+.++-.
T Consensus 17 G~~vW~aa~~La~-~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~ 93 (173)
T PF10294_consen 17 GGKVWPAALVLAR-YLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGS 93 (173)
T ss_dssp ------HHHHHHH-HHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--
T ss_pred cEEEechHHHHHH-HHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccc
Confidence 45677543 233 56442 223446779999999888 6666666 44566555433 2223444444422
Q ss_pred ------ccccccccccCCC--C-CcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 116 ------FGLYHDWCESFNT--Y-PRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 116 ------i~~~~dwce~f~t--y-PrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
--...||.+..+. . ++.||+|-++.++-.. -..+.++.=++++|.|+|.+++..
T Consensus 94 ~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 94 LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---ELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp ------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred cccccccCcEEEecCcccccccccccCCEEEEecccchH---HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 2266789886522 3 3789999998666432 234577778899999999988873
No 143
>PLN02366 spermidine synthase
Probab=96.83 E-value=0.0011 Score=60.82 Aligned_cols=101 Identities=20% Similarity=0.246 Sum_probs=57.1
Q ss_pred CCceEEEeeCCchHHHHHHhhCCC-eEEEEecCCCCC------CChhhHHhhCc----cccccccccc-CCCCC-cchhh
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESP------DTLPIIYERGL----FGLYHDWCES-FNTYP-RTYDL 135 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~~-V~vmnv~p~~~~------~~l~~i~eRGL----i~~~~dwce~-f~tyP-rtyDl 135 (223)
..-++|||+|||.|+.++.+.+.+ |.-+-++..+.. +.++.+ ..|+ +-++..-+.. +...+ +.||+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~-~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDL-AVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhh-ccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 447899999999999999998873 433333333321 111111 1122 1122211111 22343 78999
Q ss_pred hhhhhhhcccccc--cchhHHHHhhhhcccCCcEEEEe
Q 027471 136 LHADHLFSTIKKR--CSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 136 lH~~~lfs~~~~r--C~i~~vl~E~DRILRPgG~~ii~ 171 (223)
|-++. +...... ---..++..+-|.|+|||.++..
T Consensus 169 Ii~D~-~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 169 IIVDS-SDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEEcC-CCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 88752 3222111 01236788999999999999874
No 144
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=96.79 E-value=0.0015 Score=57.84 Aligned_cols=142 Identities=17% Similarity=0.171 Sum_probs=91.8
Q ss_pred hhhccCCCCCCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---ccc--cccccCCC-
Q 027471 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LYH--DWCESFNT- 128 (223)
Q Consensus 60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~--dwce~f~t- 128 (223)
|+..| +....-++||.+|.+.|--|..|+.- .++++-.-|.......+...+-|+-. ++. |+-+.++.
T Consensus 50 ~L~~L-~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 50 LLRLL-ARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHH-HHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence 55544 33446889999999988766666533 26666665555555777777778754 333 77777775
Q ss_pred CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe---------cc-----HHHHHHHHHHHHhCCCeeEEe
Q 027471 129 YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR---------DD-----AETIVEVEDLVKSLHWDVRMI 194 (223)
Q Consensus 129 yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~---------D~-----~~~~~~i~~i~~~l~W~~~~~ 194 (223)
...+||+|-.+ .+.-.-+.++-+.=+.|||||.+|+. ++ ......+..+..-+.++-+..
T Consensus 129 ~~~~fDliFID------adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (219)
T COG4122 129 LDGSFDLVFID------ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYD 202 (219)
T ss_pred cCCCccEEEEe------CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCce
Confidence 67999997765 11334558888888999999999998 12 123344555555555543211
Q ss_pred e--cCCCeeEEEEEec
Q 027471 195 Y--TNDNQGMLCVHKT 208 (223)
Q Consensus 195 ~--~~~~e~~L~~~K~ 208 (223)
. -.-.+.++++.|.
T Consensus 203 t~~lP~gDGl~v~~k~ 218 (219)
T COG4122 203 TVLLPLGDGLLLSRKR 218 (219)
T ss_pred eEEEecCCceEEEeec
Confidence 1 1134788888885
No 145
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=96.73 E-value=0.0036 Score=58.91 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=65.1
Q ss_pred eEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCC---Ccchhhhhhhhhhc
Q 027471 72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTY---PRTYDLLHADHLFS 143 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~ty---PrtyDllH~~~lfs 143 (223)
.+|||+|||+|.|+..|++. .|+.+...+.......+-+...|+-. +..|..+.++.+ +.+||+|-.+
T Consensus 294 ~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d---- 369 (431)
T TIGR00479 294 ELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD---- 369 (431)
T ss_pred CEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC----
Confidence 47999999999999999876 45555554443222222222334422 223332223332 2468876654
Q ss_pred ccccccc-hhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE
Q 027471 144 TIKKRCS-LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 144 ~~~~rC~-i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~ 192 (223)
.+|-. ...++.++.+ |+|++.++++-+..++.+--+.+..-.|+..
T Consensus 370 --PPr~G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~~~gy~~~ 416 (431)
T TIGR00479 370 --PPRKGCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLCKEGYGIT 416 (431)
T ss_pred --cCCCCCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEE
Confidence 12222 2355556555 8999999999777766444444444456543
No 146
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=96.68 E-value=0.0011 Score=58.54 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=67.8
Q ss_pred EEEeeCCchHHHHHHhhCCCe----EEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCCcchhhhhhhhhhcc
Q 027471 73 NVMDMRAVYGGFAAALKDLKV----WVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYPRTYDLLHADHLFST 144 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~~V----~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyPrtyDllH~~~lfs~ 144 (223)
+|||+|||-|.+-..|++.+. +-+.-++....=...++..+|+.. ...|.-.+ ...+.-||+||--+-|..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-cccccceeEEeecCceee
Confidence 899999999999999998853 222222221111222334455543 22221111 225578888887665543
Q ss_pred cc---c--ccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhC
Q 027471 145 IK---K--RCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSL 187 (223)
Q Consensus 145 ~~---~--rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l 187 (223)
.. + .-.+..++=-++++|+|||.|+|+.-.-+.+++.+....-
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~ 196 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENF 196 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcC
Confidence 22 1 1112467777899999999999997666665555554433
No 147
>PHA03411 putative methyltransferase; Provisional
Probab=96.64 E-value=0.002 Score=59.00 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=60.3
Q ss_pred eEEEeeCCchHHHHHHhhCC----CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC--cchhhhhhhhhhccc
Q 027471 72 RNVMDMRAVYGGFAAALKDL----KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP--RTYDLLHADHLFSTI 145 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP--rtyDllH~~~lfs~~ 145 (223)
.+|||+|||.|.++..+.++ .|+.+.+.|. .++.+.++ +..+ .=.|..+..++ ++||+|=++--|.+.
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~----al~~Ar~n-~~~v-~~v~~D~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE----FARIGKRL-LPEA-EWITSDVFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH----HHHHHHHh-CcCC-EEEECchhhhcccCCCcEEEEcCCcccc
Confidence 47999999999998887653 4666666553 44444332 2111 11123444443 789998886666542
Q ss_pred c-----c-----------cc-chhHHHHhhhhcccCCcEEEEe
Q 027471 146 K-----K-----------RC-SLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 146 ~-----~-----------rC-~i~~vl~E~DRILRPgG~~ii~ 171 (223)
. + .| .+...+.+.-++|.|+|.+++-
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 1 1 12 2468899999999999988775
No 148
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.60 E-value=0.014 Score=50.79 Aligned_cols=140 Identities=16% Similarity=0.139 Sum_probs=83.0
Q ss_pred ccchhHh--hhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhh--CC--CeEEEEecCCCCCCChhhHHhh-C
Q 027471 42 PEDFTAD--YQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALK--DL--KVWVMNVVPIESPDTLPIIYER-G 114 (223)
Q Consensus 42 ~~~f~~D--~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~--~~--~V~vmnv~p~~~~~~l~~i~eR-G 114 (223)
.+.|..| ...=|+-|+..=+..|.+.++. .++|+|||+|+-+-.+. .. .|..+---+. .-++.+.+.+| |
T Consensus 6 D~~F~~~~~~p~TK~EIRal~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~-a~~~~~~N~~~fg 82 (187)
T COG2242 6 DELFERDEGGPMTKEEIRALTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEE-ALELIERNAARFG 82 (187)
T ss_pred chhhccCCCCCCcHHHHHHHHHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCHH-HHHHHHHHHHHhC
Confidence 3456555 3333455554335667666665 89999999999765554 33 3444432111 11244444443 3
Q ss_pred ccc--ccc-cccccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCC-
Q 027471 115 LFG--LYH-DWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHW- 189 (223)
Q Consensus 115 Li~--~~~-dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W- 189 (223)
+.+ ++. +==+.|+..| +||-+--+ - .-.++.+|.-...-|||||.+|.. -+.+....+-+.++.+.+
T Consensus 83 ~~n~~vv~g~Ap~~L~~~~-~~daiFIG-----G--g~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 83 VDNLEVVEGDAPEALPDLP-SPDAIFIG-----G--GGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred CCcEEEEeccchHhhcCCC-CCCEEEEC-----C--CCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 322 111 1112333344 67755544 2 245789999999999999999997 566677777777888888
Q ss_pred eeE
Q 027471 190 DVR 192 (223)
Q Consensus 190 ~~~ 192 (223)
++.
T Consensus 155 ei~ 157 (187)
T COG2242 155 EIV 157 (187)
T ss_pred eEE
Confidence 543
No 149
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=96.59 E-value=0.0034 Score=59.57 Aligned_cols=123 Identities=17% Similarity=0.101 Sum_probs=65.0
Q ss_pred ceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCcc----ccc-ccccccCCCC---Ccchhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLF----GLY-HDWCESFNTY---PRTYDLLHAD 139 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi----~~~-~dwce~f~ty---PrtyDllH~~ 139 (223)
-.+|||++||+|+|+-+.+.. .|+.+.+++....-..+-+..-|+- -++ .|..+.+..+ .++||+|=++
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 368999999999998654433 3565555444322122222223552 122 2222222222 2579998776
Q ss_pred hhh-cccc-----cccchhHHHHhhhhcccCCcEEEEecc------HHHHHHHHHHHHhCCCeeEE
Q 027471 140 HLF-STIK-----KRCSLKAVVAEVDRILRPDGNLILRDD------AETIVEVEDLVKSLHWDVRM 193 (223)
Q Consensus 140 ~lf-s~~~-----~rC~i~~vl~E~DRILRPgG~~ii~D~------~~~~~~i~~i~~~l~W~~~~ 193 (223)
--+ ...+ ..+....++.-.-++|+|||.++.... ....+.+.+-+..-.-++.+
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~ 366 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQF 366 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEE
Confidence 222 1111 112345666777899999999998532 22344444445544445443
No 150
>PRK03612 spermidine synthase; Provisional
Probab=96.57 E-value=0.0049 Score=60.13 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=65.5
Q ss_pred CceEEEeeCCchHHHHHHhhCCC-eEEEEecCCCCCCChhhHHhh---------Cc----cccccccccc-CCCCCcchh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESPDTLPIIYER---------GL----FGLYHDWCES-FNTYPRTYD 134 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~~-V~vmnv~p~~~~~~l~~i~eR---------GL----i~~~~dwce~-f~tyPrtyD 134 (223)
+-++|||+|||.|+.++.+.+++ |--+-++..+.. .++.+.+. ++ +-+++.-+.. +...++.||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~-vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA-MTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH-HHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 45789999999999999888763 222222222221 33333221 11 1122221111 223568899
Q ss_pred hhhhhhhhccccc---ccchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCee
Q 027471 135 LLHADHLFSTIKK---RCSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDV 191 (223)
Q Consensus 135 llH~~~lfs~~~~---rC~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~ 191 (223)
+|-++. ...... +=--+.++.++-|.|+|||.+++... .+....+.+.+++....+
T Consensus 376 vIi~D~-~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v 439 (521)
T PRK03612 376 VIIVDL-PDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT 439 (521)
T ss_pred EEEEeC-CCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence 998862 221111 00012577889999999999999532 333445555566654543
No 151
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.40 E-value=0.013 Score=50.25 Aligned_cols=134 Identities=21% Similarity=0.251 Sum_probs=79.2
Q ss_pred HhhhhHHHHHhhhhhhccC-CCCCCceEEEeeCCchHH----HHHHhhCCCeEEEEecCCCCCCChhhHHhhCccc--cc
Q 027471 47 ADYQHWKNVVSKSYLNGMG-INWSFVRNVMDMRAVYGG----FAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG--LY 119 (223)
Q Consensus 47 ~D~~~W~~~v~~~Y~~~l~-i~~~~iRnvLDmgaG~Gg----FAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~--~~ 119 (223)
...+.|.+++-.+ +..+. +..... +++|+|+|-|- +|.++-+..|+.+.-+..-..--..++.+=||-. ++
T Consensus 26 ~~~~~~~~Hi~DS-L~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~ 103 (184)
T PF02527_consen 26 DPEEIWERHILDS-LALLPFLPDFGK-KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVI 103 (184)
T ss_dssp SHHHHHHHHHHHH-HGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEE
T ss_pred CHHHHHHHHHHHH-HHhhhhhccCCc-eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEE
Confidence 3457887776552 22222 222222 69999999874 3444444455544322211111445667778864 45
Q ss_pred ccccccCCC--CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec---cHHHHHHHHHHHHhCCCeeE
Q 027471 120 HDWCESFNT--YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD---DAETIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 120 ~dwce~f~t--yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D---~~~~~~~i~~i~~~l~W~~~ 192 (223)
+ ++.+. ++..||++-|- .-+.+..++.-+-+.|+|||.+++-- ..+.+...++-.+.+.++..
T Consensus 104 ~---~R~E~~~~~~~fd~v~aR-------Av~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 104 N---GRAEEPEYRESFDVVTAR-------AVAPLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp E---S-HHHTTTTT-EEEEEEE-------SSSSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred E---eeecccccCCCccEEEee-------hhcCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 5 45555 88999998873 23567788888899999999999973 34455666666777777654
No 152
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.35 E-value=0.0025 Score=52.33 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=51.3
Q ss_pred ceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhh----CcccccccccccCCCC--C-cchhhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYER----GLFGLYHDWCESFNTY--P-RTYDLLHADHL 141 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eR----GLi~~~~dwce~f~ty--P-rtyDllH~~~l 141 (223)
-.+|||+|||.|.++..|+++ .|+.+.+.+. .++.+.++ +=+-+++ +.+..+ + ..||.+=+.--
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~----~~~~~~~~~~~~~~v~ii~---~D~~~~~~~~~~~d~vi~n~P 86 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLERAARVTAIEIDPR----LAPRLREKFAAADNLTVIH---GDALKFDLPKLQPYKVVGNLP 86 (169)
T ss_pred cCEEEEECCCccHHHHHHHhcCCeEEEEECCHH----HHHHHHHHhccCCCEEEEE---CchhcCCccccCCCEEEECCC
Confidence 358999999999999999987 4555655443 23333222 1122333 233333 3 45787655433
Q ss_pred hcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
|+.. ...+..++.+ . -+.++|.+++..
T Consensus 87 y~~~--~~~i~~~l~~-~-~~~~~~~l~~q~ 113 (169)
T smart00650 87 YNIS--TPILFKLLEE-P-PAFRDAVLMVQK 113 (169)
T ss_pred cccH--HHHHHHHHhc-C-CCcceEEEEEEH
Confidence 3321 2223344332 2 266999999974
No 153
>PHA03412 putative methyltransferase; Provisional
Probab=96.10 E-value=0.01 Score=53.48 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=51.7
Q ss_pred eEEEeeCCchHHHHHHhhCC-------CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCC--Ccchhhhhhhhhh
Q 027471 72 RNVMDMRAVYGGFAAALKDL-------KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY--PRTYDLLHADHLF 142 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~-------~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty--PrtyDllH~~~lf 142 (223)
.+|||+|||+|.++.+++++ .|+.+-+.|. .++.+. +.+.. ++=.+..|-.+ +.+||+|=|.==|
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~----Al~~Ar-~n~~~-~~~~~~D~~~~~~~~~FDlIIsNPPY 124 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT----YYKLGK-RIVPE-ATWINADALTTEFDTLFDMAISNPPF 124 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH----HHHHHH-hhccC-CEEEEcchhcccccCCccEEEECCCC
Confidence 47999999999999987643 3555544333 222222 22211 11112344333 4689997665444
Q ss_pred cccc-----c---ccchh-HHHHhhhhcccCCcEEEE
Q 027471 143 STIK-----K---RCSLK-AVVAEVDRILRPDGNLIL 170 (223)
Q Consensus 143 s~~~-----~---rC~i~-~vl~E~DRILRPgG~~ii 170 (223)
.... . ...+. .++...-|+||||++ |+
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 3211 1 12333 477777888888887 54
No 154
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=96.04 E-value=0.0053 Score=58.02 Aligned_cols=113 Identities=12% Similarity=0.172 Sum_probs=63.6
Q ss_pred CCceEEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCC----ChhhHHhhC---ccc-ccccccccCCC-------CC
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPD----TLPIIYERG---LFG-LYHDWCESFNT-------YP 130 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~----~l~~i~eRG---Li~-~~~dwce~f~t-------yP 130 (223)
..++.++|+|||-||=.-.--+- .+....++.+.-.+ ..++-.-+- +.. .+. |..|.. ++
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~--~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIA--ADCFKERLMDLLEFK 193 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEE--eccchhHHHHhccCC
Confidence 35777999999999954333332 34556666554321 111111111 001 111 122222 34
Q ss_pred -cchhhhhhhhhhccc-ccccchhHHHHhhhhcccCCcEEEEecc--HHHHHHHHHH
Q 027471 131 -RTYDLLHADHLFSTI-KKRCSLKAVVAEVDRILRPDGNLILRDD--AETIVEVEDL 183 (223)
Q Consensus 131 -rtyDllH~~~lfs~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~--~~~~~~i~~i 183 (223)
..||++-|...|+.. ..-......|.-+-+-|||||+||-|-+ ..++.+++..
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG 250 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence 449999998777632 2222233678889999999999999943 4455665544
No 155
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=95.82 E-value=0.017 Score=52.14 Aligned_cols=136 Identities=19% Similarity=0.185 Sum_probs=87.3
Q ss_pred CCCCCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCC-CCChhhHHhhCcc-----cccccccccCCCCCcchhhhhh
Q 027471 66 INWSFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIES-PDTLPIIYERGLF-----GLYHDWCESFNTYPRTYDLLHA 138 (223)
Q Consensus 66 i~~~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~-~~~l~~i~eRGLi-----~~~~dwce~f~tyPrtyDllH~ 138 (223)
|.....++|.|+|||.|..-+.|..| +.-++.- .++ ++.+..+.+|+.- |-+++||- ++..||+-+
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~G--iDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p-----~~~~dllfa 98 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARRWPDAVITG--IDSSPAMLAKAAQRLPDATFEEADLRTWKP-----EQPTDLLFA 98 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHhCCCCeEee--ccCCHHHHHHHHHhCCCCceecccHhhcCC-----CCccchhhh
Confidence 66778999999999999999999988 4333221 133 3477777777652 45667763 277899999
Q ss_pred hhhhccccc-ccchhHHHHhhhhcccCCcEEEEe--ccHHH--HHHHHHHHHhCCCeeEEee------------------
Q 027471 139 DHLFSTIKK-RCSLKAVVAEVDRILRPDGNLILR--DDAET--IVEVEDLVKSLHWDVRMIY------------------ 195 (223)
Q Consensus 139 ~~lfs~~~~-rC~i~~vl~E~DRILRPgG~~ii~--D~~~~--~~~i~~i~~~l~W~~~~~~------------------ 195 (223)
.-+|.-..+ --.++.+|- -|+|||.+-+. |+.+. -.-+.+.++..-|.....+
T Consensus 99 NAvlqWlpdH~~ll~rL~~----~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lL 174 (257)
T COG4106 99 NAVLQWLPDHPELLPRLVS----QLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELL 174 (257)
T ss_pred hhhhhhccccHHHHHHHHH----hhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHh
Confidence 988886554 333334443 48999999987 44332 2345555665566543221
Q ss_pred cCCCeeEEEEEecccCC
Q 027471 196 TNDNQGMLCVHKTYWRP 212 (223)
Q Consensus 196 ~~~~e~~L~~~K~~w~~ 212 (223)
.....+|=|+.+.|-.+
T Consensus 175 a~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 175 APLACRVDIWHTTYYHQ 191 (257)
T ss_pred Ccccceeeeeeeecccc
Confidence 12246677777777665
No 156
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=95.80 E-value=0.0085 Score=55.66 Aligned_cols=125 Identities=20% Similarity=0.304 Sum_probs=86.5
Q ss_pred CCceEEEeeCCchHHHHH-HhhCC-----CeEEEEecCCCCCCChhhHHhhCcccccc-cccccCCC--CC---cchhhh
Q 027471 69 SFVRNVMDMRAVYGGFAA-ALKDL-----KVWVMNVVPIESPDTLPIIYERGLFGLYH-DWCESFNT--YP---RTYDLL 136 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA-~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~~~~-dwce~f~t--yP---rtyDll 136 (223)
++--.||||-||.|-.-= +|.+. .|..-..+|.+...-.+.|.+|||-.+.. .=..+|.. |- -.++|+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 555569999999986321 12222 23334555555555778999999976421 00123433 33 457888
Q ss_pred hhhhhhcccccccchhHHHHhhhhcccCCcEEEEec--cHHHHHHHHHHHHhC----CCeeEE
Q 027471 137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD--DAETIVEVEDLVKSL----HWDVRM 193 (223)
Q Consensus 137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D--~~~~~~~i~~i~~~l----~W~~~~ 193 (223)
=.++||....+.-.+..-|.=+.++|.|||++|.+- -+..++.|.+.+++. -|-++-
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~WvMRr 276 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWVMRR 276 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceEEEe
Confidence 899999999887677788889999999999999996 456778888888774 587764
No 157
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=95.78 E-value=0.0039 Score=56.60 Aligned_cols=111 Identities=14% Similarity=0.121 Sum_probs=63.6
Q ss_pred eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcccccccccccCCCC----Ccchhhhhhhhhhccc
Q 027471 72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY----PRTYDLLHADHLFSTI 145 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty----PrtyDllH~~~lfs~~ 145 (223)
..|||+|||+|.|+..|++++ |+.+.+.+.......+-+.+.|+.. +.=.|..+..+ +..||+|-++
T Consensus 175 ~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~-v~~~~~D~~~~~~~~~~~~D~Vv~d------ 247 (315)
T PRK03522 175 RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTN-VQFQALDSTQFATAQGEVPDLVLVN------ 247 (315)
T ss_pred CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCc-eEEEEcCHHHHHHhcCCCCeEEEEC------
Confidence 679999999999999999874 5555554443333333344456521 11122233222 2468887765
Q ss_pred ccccchhHHHHhhhhcccCCcEEEEeccHHHH-HHHHHHHHhCCCeeE
Q 027471 146 KKRCSLKAVVAEVDRILRPDGNLILRDDAETI-VEVEDLVKSLHWDVR 192 (223)
Q Consensus 146 ~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~-~~i~~i~~~l~W~~~ 192 (223)
.+|..+..-+.++=.-++|++.++++-+..++ ..++.+ . -|++.
T Consensus 248 PPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-~--~y~~~ 292 (315)
T PRK03522 248 PPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-P--GYRIE 292 (315)
T ss_pred CCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-c--CcEEE
Confidence 33443333333333337899999999665553 445444 2 46554
No 158
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=95.71 E-value=0.0089 Score=54.48 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=88.7
Q ss_pred HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCCe-EEEEecCCCCCCChhhH----HhhCcc----c
Q 027471 47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKV-WVMNVVPIESPDTLPII----YERGLF----G 117 (223)
Q Consensus 47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~V-~vmnv~p~~~~~~l~~i----~eRGLi----~ 117 (223)
+.+.-|..-..+ .+.. +...--+|||.=.|.|-+|..-.+++. .|+++- + .|+-++.+ +.|||. -
T Consensus 115 ~~tdP~~Dt~~K--v~~V--~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvE-k-dp~VLeLa~lNPwSr~l~~~~i~ 188 (287)
T COG2521 115 KGTDPLEDTLAK--VELV--KVKRGERVLDTCTGLGYTAIEALERGAIHVITVE-K-DPNVLELAKLNPWSRELFEIAIK 188 (287)
T ss_pred cCcCcHHHHHhh--hhee--ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEe-e-CCCeEEeeccCCCCccccccccE
Confidence 444555555443 3322 334456899999999999999999976 555441 0 11111111 234442 2
Q ss_pred -ccccccccCCCCC-cchhh-hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe--cc------HHHHHHHHHHHHh
Q 027471 118 -LYHDWCESFNTYP-RTYDL-LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR--DD------AETIVEVEDLVKS 186 (223)
Q Consensus 118 -~~~dwce~f~tyP-rtyDl-lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~--D~------~~~~~~i~~i~~~ 186 (223)
+..|--|...+|+ .+||. ||=--=||+...- =-+.+-.|+.|||||||.+.-- .+ .+....+.+-+++
T Consensus 189 iilGD~~e~V~~~~D~sfDaIiHDPPRfS~AgeL-YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 189 IILGDAYEVVKDFDDESFDAIIHDPPRFSLAGEL-YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR 267 (287)
T ss_pred EecccHHHHHhcCCccccceEeeCCCccchhhhH-hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence 3445445666788 78997 5765555544311 1136778999999999998753 11 2234556666777
Q ss_pred CCCeeEEeecCCCeeE-EEEEec
Q 027471 187 LHWDVRMIYTNDNQGM-LCVHKT 208 (223)
Q Consensus 187 l~W~~~~~~~~~~e~~-L~~~K~ 208 (223)
.-..+.... .|.. ++|+|+
T Consensus 268 vGF~~v~~~---~~~~gv~A~k~ 287 (287)
T COG2521 268 VGFEVVKKV---REALGVVAVKP 287 (287)
T ss_pred cCceeeeee---hhccceEEecC
Confidence 777643221 3334 666663
No 159
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=95.70 E-value=0.022 Score=55.42 Aligned_cols=101 Identities=19% Similarity=0.238 Sum_probs=57.1
Q ss_pred CceEEEeeCCchHHHHHHhh----CCCeEE-EEecCCCCCCChhhHHhh-Cccc--ccccccccCC-CCCcchhhhh---
Q 027471 70 FVRNVMDMRAVYGGFAAALK----DLKVWV-MNVVPIESPDTLPIIYER-GLFG--LYHDWCESFN-TYPRTYDLLH--- 137 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~----~~~V~v-mnv~p~~~~~~l~~i~eR-GLi~--~~~dwce~f~-tyPrtyDllH--- 137 (223)
.--.||||.|+.||=..+|+ +++..+ ..+.+.-. ..++-+.+| |+.. +.+.-...++ .+|..||.|-
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-KVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 34579999999999555443 345333 33432222 244555555 6533 2221111222 3667899977
Q ss_pred -hhh--hhccc-------c----cccc-h-hHHHHhhhhcccCCcEEEEe
Q 027471 138 -ADH--LFSTI-------K----KRCS-L-KAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 138 -~~~--lfs~~-------~----~rC~-i-~~vl~E~DRILRPgG~~ii~ 171 (223)
|++ +|..- . .+|. + ..+|...-+.|||||.+|.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYS 241 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYS 241 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 542 23211 1 0111 1 17888999999999999998
No 160
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.57 E-value=0.059 Score=49.18 Aligned_cols=43 Identities=19% Similarity=0.473 Sum_probs=34.0
Q ss_pred hhHHHHhhhhcccCCcEEEEe--------cc-------HH-HHHHHHHHHHhCCCeeEE
Q 027471 151 LKAVVAEVDRILRPDGNLILR--------DD-------AE-TIVEVEDLVKSLHWDVRM 193 (223)
Q Consensus 151 i~~vl~E~DRILRPgG~~ii~--------D~-------~~-~~~~i~~i~~~l~W~~~~ 193 (223)
+-++|..+.++|||||+||=- +. .+ .+++|..+++++-|+...
T Consensus 181 i~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 181 IIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred HHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 448999999999999977743 32 22 378999999999999863
No 161
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=95.49 E-value=0.0058 Score=57.71 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=58.5
Q ss_pred EEEeeCCchHHHHHHhhCC---CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCCcchhhhhhhhhhcccc
Q 027471 73 NVMDMRAVYGGFAAALKDL---KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYPRTYDLLHADHLFSTIK 146 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~---~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyPrtyDllH~~~lfs~~~ 146 (223)
-++|+|||+|+...+...- ++.-+|..+.+....-+...-.++-- .+..|+.--++=++|||.+-+-.+--+.+
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~ 192 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAP 192 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCC
Confidence 6789999999988877543 55555554443322222222222210 12233433344449999977653333333
Q ss_pred cccchhHHHHhhhhcccCCcEEEEe
Q 027471 147 KRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 147 ~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
+ ...++.|+-|+|+|||+++.-
T Consensus 193 ~---~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 193 D---LEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred c---HHHHHHHHhcccCCCceEEeH
Confidence 2 358999999999999999986
No 162
>PRK04148 hypothetical protein; Provisional
Probab=95.46 E-value=0.028 Score=46.39 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=35.4
Q ss_pred CceEEEeeCCchHH-HHHHhhCCCeEE--EEecCCCCCCChhhHHhhCccccccc
Q 027471 70 FVRNVMDMRAVYGG-FAAALKDLKVWV--MNVVPIESPDTLPIIYERGLFGLYHD 121 (223)
Q Consensus 70 ~iRnvLDmgaG~Gg-FAA~L~~~~V~v--mnv~p~~~~~~l~~i~eRGLi~~~~d 121 (223)
+-+.++|+|||+|. +|..|.+.+..| +.+.|. .++.+.++|+-.+..|
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~----aV~~a~~~~~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEK----AVEKAKKLGLNAFVDD 66 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHH----HHHHHHHhCCeEEECc
Confidence 34679999999996 999999886544 444433 5777888887666665
No 163
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.013 Score=51.68 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=59.6
Q ss_pred hhhccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCC-CC--cchh
Q 027471 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT-YP--RTYD 134 (223)
Q Consensus 60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t-yP--rtyD 134 (223)
-.+.|.++.+ -.||++|||+|=-||-|.+. .|..+-..+.-.....+-...-|+-. ++--|..-+. || .-||
T Consensus 64 m~~~L~~~~g--~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~~~~aPyD 140 (209)
T COG2518 64 MLQLLELKPG--DRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGWPEEAPYD 140 (209)
T ss_pred HHHHhCCCCC--CeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCCCCCCCcC
Confidence 4455655555 78999999999888888776 34444332221111222234456633 2211234444 77 7899
Q ss_pred hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
.|.....+.. ++.-|+| =|+|||.+++=
T Consensus 141 ~I~Vtaaa~~------vP~~Ll~---QL~~gGrlv~P 168 (209)
T COG2518 141 RIIVTAAAPE------VPEALLD---QLKPGGRLVIP 168 (209)
T ss_pred EEEEeeccCC------CCHHHHH---hcccCCEEEEE
Confidence 9988733332 3344554 59999999985
No 164
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=95.35 E-value=0.011 Score=57.05 Aligned_cols=142 Identities=20% Similarity=0.225 Sum_probs=67.8
Q ss_pred CCCCCCCCcccccccCccCCCCccchhHhhhhHHH---HHhhhhhhccCCCCC----CceEEEeeCCchHHHHHHh----
Q 027471 20 PLRLEKPPYWLNSEAGVYGKAAPEDFTADYQHWKN---VVSKSYLNGMGINWS----FVRNVMDMRAVYGGFAAAL---- 88 (223)
Q Consensus 20 P~rl~~~p~rl~~~~g~~~~~~~~~f~~D~~~W~~---~v~~~Y~~~l~i~~~----~iRnvLDmgaG~GgFAA~L---- 88 (223)
..+|..|..=|.... .+.+.|.|++|.-+-.. -+.+ .+... .... +--+|||+|||.|-.+.+-
T Consensus 134 ~d~Lq~PLqPl~dnL---~s~tYe~fE~D~vKY~~Ye~AI~~-al~D~-~~~~~~~~~~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 134 EDYLQAPLQPLMDNL---ESQTYEVFEKDPVKYDQYERAIEE-ALKDR-VRKNSYSSKDKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp ---EE----TTTS------HHHHHHHCC-HHHHHHHHHHHHH-HHHHH-HTTS-SEETT-EEEEES-TTSHHHHHHHHTT
T ss_pred hhhccCCCCCchhhh---ccccHhhHhcCHHHHHHHHHHHHH-HHHhh-hhhccccccceEEEEeCCCccHHHHHHHHHH
Confidence 345555533344311 12357899999876643 2322 22222 1222 2467999999999874221
Q ss_pred --hCCCeEEEEecCCCC--CCChh-hHHhhCc---ccccccccccCCCC--CcchhhhhhhhhhcccccccchhHHHHhh
Q 027471 89 --KDLKVWVMNVVPIES--PDTLP-IIYERGL---FGLYHDWCESFNTY--PRTYDLLHADHLFSTIKKRCSLKAVVAEV 158 (223)
Q Consensus 89 --~~~~V~vmnv~p~~~--~~~l~-~i~eRGL---i~~~~dwce~f~ty--PrtyDllH~~~lfs~~~~rC~i~~vl~E~ 158 (223)
....+-|--| ..+. -.+++ .+.+.|+ |-+++ +..... |.-.|+|=+- ++........+...|.-.
T Consensus 209 ~~~~~a~~VyAV-Ekn~~A~~~l~~~v~~n~w~~~V~vi~---~d~r~v~lpekvDIIVSE-lLGsfg~nEl~pE~Lda~ 283 (448)
T PF05185_consen 209 ARAGGAVKVYAV-EKNPNAVVTLQKRVNANGWGDKVTVIH---GDMREVELPEKVDIIVSE-LLGSFGDNELSPECLDAA 283 (448)
T ss_dssp HHHCCESEEEEE-ESSTHHHHHHHHHHHHTTTTTTEEEEE---S-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHG
T ss_pred HHhCCCeEEEEE-cCCHhHHHHHHHHHHhcCCCCeEEEEe---CcccCCCCCCceeEEEEe-ccCCccccccCHHHHHHH
Confidence 1222333323 1111 12443 3355565 43555 354543 4678887663 222222334566788999
Q ss_pred hhcccCCcEEEEe
Q 027471 159 DRILRPDGNLILR 171 (223)
Q Consensus 159 DRILRPgG~~ii~ 171 (223)
||.|+|||.+|=+
T Consensus 284 ~rfLkp~Gi~IP~ 296 (448)
T PF05185_consen 284 DRFLKPDGIMIPS 296 (448)
T ss_dssp GGGEEEEEEEESS
T ss_pred HhhcCCCCEEeCc
Confidence 9999999987743
No 165
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=95.13 E-value=0.047 Score=48.43 Aligned_cols=106 Identities=6% Similarity=-0.037 Sum_probs=63.8
Q ss_pred hhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcc--------------ccccccc
Q 027471 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLF--------------GLYHDWC 123 (223)
Q Consensus 60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi--------------~~~~dwc 123 (223)
|+..+.+.. -..||+.|||-|-=+.+|+++| |+.+.++|.-... +..|.|+. +-+.=+|
T Consensus 35 ~~~~l~~~~--~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~---~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 109 (226)
T PRK13256 35 HFSKLNIND--SSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLS---FFSQNTINYEVIHGNDYKLYKGDDIEIYV 109 (226)
T ss_pred HHHhcCCCC--CCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHH---HHHHcCCCcceecccccceeccCceEEEE
Confidence 444444433 3589999999999999999995 5556666653221 11112211 1122234
Q ss_pred ccCCCCC------cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 124 ESFNTYP------RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 124 e~f~tyP------rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
..|=+.+ +.||+|-=...|-.... -.-..+..-|.++|||||.+++-
T Consensus 110 gD~f~l~~~~~~~~~fD~VyDra~~~Alpp-~~R~~Y~~~l~~lL~pgg~llll 162 (226)
T PRK13256 110 ADIFNLPKIANNLPVFDIWYDRGAYIALPN-DLRTNYAKMMLEVCSNNTQILLL 162 (226)
T ss_pred ccCcCCCccccccCCcCeeeeehhHhcCCH-HHHHHHHHHHHHHhCCCcEEEEE
Confidence 4444433 36787655555555532 12248999999999999988763
No 166
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=94.88 E-value=0.014 Score=52.23 Aligned_cols=98 Identities=16% Similarity=0.126 Sum_probs=58.8
Q ss_pred CCCceEEEeeCCchHHHHHHhhC----C-CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCC------CCcc
Q 027471 68 WSFVRNVMDMRAVYGGFAAALKD----L-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNT------YPRT 132 (223)
Q Consensus 68 ~~~iRnvLDmgaG~GgFAA~L~~----~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~t------yPrt 132 (223)
...-++||.+|+++|--|.+|+. . .|+++-.-|....-..+.+..-|+.. ...+..+.++. ++.+
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34577999999988866555543 2 46666554432223555666777643 22333344433 3568
Q ss_pred hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 133 yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
||+|-.+.- + -....++...=+.|||||.+++.
T Consensus 157 fD~iFiDad----K--~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDAD----K--DNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecCC----H--HHhHHHHHHHHHhcCCCeEEEEc
Confidence 999877622 1 11234444445899999999987
No 167
>PLN02672 methionine S-methyltransferase
Probab=94.82 E-value=0.054 Score=57.68 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=30.0
Q ss_pred hHHHHhhhhcccCCcEEEEeccHHHHHHHH-HHHHhCCCee
Q 027471 152 KAVVAEVDRILRPDGNLILRDDAETIVEVE-DLVKSLHWDV 191 (223)
Q Consensus 152 ~~vl~E~DRILRPgG~~ii~D~~~~~~~i~-~i~~~l~W~~ 191 (223)
..++.|.-++|+|||++++--....-+.+. +++++..|..
T Consensus 258 r~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~ 298 (1082)
T PLN02672 258 ARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRI 298 (1082)
T ss_pred HHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCe
Confidence 478999999999999999975544455666 5777655654
No 168
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.54 E-value=0.071 Score=47.00 Aligned_cols=131 Identities=15% Similarity=0.224 Sum_probs=72.9
Q ss_pred ceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhCccc---ccccccccCCCCC-cchhhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERGLFG---LYHDWCESFNTYP-RTYDLLHADHL 141 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRGLi~---~~~dwce~f~tyP-rtyDllH~~~l 141 (223)
.-.|+|+||--||+.-.+.++ .|..+.+.|.+....+.++ +|=+- +..+.-+. .+ ...|+|=|+..
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~i--q~d~~~~~~~~~l~~~---l~~~~~DvV~sD~a 120 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFL--QGDITDEDTLEKLLEA---LGGAPVDVVLSDMA 120 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEE--eeeccCccHHHHHHHH---cCCCCcceEEecCC
Confidence 467999999999997766554 3788888888765332211 11110 00000011 22 11344333211
Q ss_pred hc--------ccccccchhHHHHhhhh-cccCCcEEEEe-----ccHHHHHHHHHHHHhCCCeeEEe-ecCCCeeEEEEE
Q 027471 142 FS--------TIKKRCSLKAVVAEVDR-ILRPDGNLILR-----DDAETIVEVEDLVKSLHWDVRMI-YTNDNQGMLCVH 206 (223)
Q Consensus 142 fs--------~~~~rC~i~~vl~E~DR-ILRPgG~~ii~-----D~~~~~~~i~~i~~~l~W~~~~~-~~~~~e~~L~~~ 206 (223)
=. +... -.+..+.+|+-. +|+|||-|+.- +..+.+..+++.++.++=..-.. -.+..|-+++|.
T Consensus 121 p~~~g~~~~Dh~r~-~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~ 199 (205)
T COG0293 121 PNTSGNRSVDHARS-MYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKRSREIYLVAK 199 (205)
T ss_pred CCcCCCccccHHHH-HHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCCCceEEEEEe
Confidence 10 0000 112255666654 99999999986 55667788888877765443211 134579999987
Q ss_pred e
Q 027471 207 K 207 (223)
Q Consensus 207 K 207 (223)
+
T Consensus 200 ~ 200 (205)
T COG0293 200 G 200 (205)
T ss_pred c
Confidence 5
No 169
>PRK00536 speE spermidine synthase; Provisional
Probab=94.46 E-value=0.11 Score=47.03 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=59.1
Q ss_pred CCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCC---CCChhhHHhhCc----ccccccccccCCCCCcchhhh
Q 027471 66 INWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIES---PDTLPIIYERGL----FGLYHDWCESFNTYPRTYDLL 136 (223)
Q Consensus 66 i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~---~~~l~~i~eRGL----i~~~~dwce~f~tyPrtyDll 136 (223)
+...+-++||=+|.|-||.++.+.+.+ |+.+.+-+.-- ...++.+. .++ +.++- + ......++||+|
T Consensus 68 ~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~-~~~~DpRv~l~~-~--~~~~~~~~fDVI 143 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFH-EVKNNKNFTHAK-Q--LLDLDIKKYDLI 143 (262)
T ss_pred hhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHH-HhhcCCCEEEee-h--hhhccCCcCCEE
Confidence 345678999999999999999999986 44333311100 01222211 122 11111 1 111134789998
Q ss_pred hhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 137 HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 137 H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
=++.+|+ +.....+.|.|+|||.++..-.
T Consensus 144 IvDs~~~--------~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 144 ICLQEPD--------IHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred EEcCCCC--------hHHHHHHHHhcCCCcEEEECCC
Confidence 8886655 2455678999999999999743
No 170
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=94.45 E-value=0.047 Score=48.96 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=18.4
Q ss_pred HHHHhhhhcccCCcEEEEeccH
Q 027471 153 AVVAEVDRILRPDGNLILRDDA 174 (223)
Q Consensus 153 ~vl~E~DRILRPgG~~ii~D~~ 174 (223)
.+|.|..=+||+||.++...+.
T Consensus 164 ~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 164 TLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hHHHHHHhhhhcCceEEEEeeH
Confidence 7899999999999999775443
No 171
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=94.43 E-value=0.034 Score=52.01 Aligned_cols=108 Identities=12% Similarity=0.121 Sum_probs=59.6
Q ss_pred eEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhHHhhCcc--cccccccccCCCC----Ccchhhhhhhhhhc
Q 027471 72 RNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPIIYERGLF--GLYHDWCESFNTY----PRTYDLLHADHLFS 143 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i~eRGLi--~~~~dwce~f~ty----PrtyDllH~~~lfs 143 (223)
++|||++||+|.|+..|+.++ |+.+-+.|.......+-+...|+- -.+. ..+..+ ...||+|-++
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~---~d~~~~~~~~~~~~D~vi~D---- 307 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAA---LDSAKFATAQMSAPELVLVN---- 307 (374)
T ss_pred CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEE---CCHHHHHHhcCCCCCEEEEC----
Confidence 589999999999999998774 444444433222122222233431 1121 121111 1347776665
Q ss_pred ccccccchh-HHHHhhhhcccCCcEEEEeccHHHH-HHHHHHHHhCCCeeE
Q 027471 144 TIKKRCSLK-AVVAEVDRILRPDGNLILRDDAETI-VEVEDLVKSLHWDVR 192 (223)
Q Consensus 144 ~~~~rC~i~-~vl~E~DRILRPgG~~ii~D~~~~~-~~i~~i~~~l~W~~~ 192 (223)
.+|..+. .++..+. -++|++.++++-+..++ ..++.+ -.|++.
T Consensus 308 --PPr~G~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L---~gy~l~ 352 (374)
T TIGR02085 308 --PPRRGIGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL---SGYQIE 352 (374)
T ss_pred --CCCCCCcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh---cCceEE
Confidence 2343322 4434443 37999999999666654 556665 246654
No 172
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=94.31 E-value=0.063 Score=46.99 Aligned_cols=126 Identities=17% Similarity=0.242 Sum_probs=72.7
Q ss_pred hhhccCCCCCCceEEEeeCCchHHHHHHhhCCC--eEEEEecCCCCCCChhhH-HhhCccccc--------------ccc
Q 027471 60 YLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK--VWVMNVVPIESPDTLPII-YERGLFGLY--------------HDW 122 (223)
Q Consensus 60 Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p~~~~~~l~~i-~eRGLi~~~--------------~dw 122 (223)
|++.++. ..-..||+-|||.|--+.+|+++| |+.+.++|. .++.. .++++-... .=+
T Consensus 29 ~~~~l~~--~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~----Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 29 YLDSLAL--KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPT----AIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp HHHHHTT--STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HH----HHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred HHHhcCC--CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHH----HHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 5555443 334579999999999999999996 444555554 33333 345541111 112
Q ss_pred cccCCCCC----cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEE-Ee-c-------cHH---HHHHHHHHHHh
Q 027471 123 CESFNTYP----RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLI-LR-D-------DAE---TIVEVEDLVKS 186 (223)
Q Consensus 123 ce~f~tyP----rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~i-i~-D-------~~~---~~~~i~~i~~~ 186 (223)
|..|=.++ +.||+|.=-..|..+. ...-+.+..=|.++|+|||.++ ++ + -.. ..++|+.++.
T Consensus 103 ~gDfF~l~~~~~g~fD~iyDr~~l~Alp-p~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~- 180 (218)
T PF05724_consen 103 CGDFFELPPEDVGKFDLIYDRTFLCALP-PEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFG- 180 (218)
T ss_dssp ES-TTTGGGSCHHSEEEEEECSSTTTS--GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHT-
T ss_pred EcccccCChhhcCCceEEEEecccccCC-HHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhc-
Confidence 33333322 3577765444443332 1233588999999999999943 33 1 011 2467888877
Q ss_pred CCCeeEE
Q 027471 187 LHWDVRM 193 (223)
Q Consensus 187 l~W~~~~ 193 (223)
-.|++..
T Consensus 181 ~~f~i~~ 187 (218)
T PF05724_consen 181 PGFEIEE 187 (218)
T ss_dssp TTEEEEE
T ss_pred CCcEEEE
Confidence 7777653
No 173
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.00 E-value=0.028 Score=48.54 Aligned_cols=120 Identities=8% Similarity=0.035 Sum_probs=57.3
Q ss_pred hhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCCCCChhhHHh-hCc--ccc
Q 027471 45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIESPDTLPIIYE-RGL--FGL 118 (223)
Q Consensus 45 f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~~~~l~~i~e-RGL--i~~ 118 (223)
+...+..-++.+-+ ++... ..+ .+|||++||+|.++..++.++ |..+-..|.-.. .++.+++ -|+ +-+
T Consensus 33 ~Rp~~d~v~e~l~~-~l~~~--~~~--~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~-~a~~Nl~~~~~~~v~~ 106 (199)
T PRK10909 33 LRPTTDRVRETLFN-WLAPV--IVD--ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQ-QLIKNLATLKAGNARV 106 (199)
T ss_pred cCcCCHHHHHHHHH-HHhhh--cCC--CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHH-HHHHHHHHhCCCcEEE
Confidence 44455555555554 33211 122 379999999999997544342 333322222111 1111111 233 112
Q ss_pred c-ccccccCCCCCcchhhhhhhhhhcccccccchhHHHHhh--hhcccCCcEEEEeccH
Q 027471 119 Y-HDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEV--DRILRPDGNLILRDDA 174 (223)
Q Consensus 119 ~-~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~--DRILRPgG~~ii~D~~ 174 (223)
+ .|..+.++.....||+|=++-=|.. .+ .+.++.-+ ..+|.|+|.+++.-..
T Consensus 107 ~~~D~~~~l~~~~~~fDlV~~DPPy~~---g~-~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 107 VNTNALSFLAQPGTPHNVVFVDPPFRK---GL-LEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred EEchHHHHHhhcCCCceEEEECCCCCC---Ch-HHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 2 2322222222256898877644321 11 12232222 3568999999998544
No 174
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.59 E-value=0.023 Score=42.79 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=32.9
Q ss_pred EeeCCchHHHHHHhhCC----C-eEEEEecCCCC-CCChhhHHhhCcccccccccccCCC----CC-cchhhhhhhhhhc
Q 027471 75 MDMRAVYGGFAAALKDL----K-VWVMNVVPIES-PDTLPIIYERGLFGLYHDWCESFNT----YP-RTYDLLHADHLFS 143 (223)
Q Consensus 75 LDmgaG~GgFAA~L~~~----~-V~vmnv~p~~~-~~~l~~i~eRGLi~~~~dwce~f~t----yP-rtyDllH~~~lfs 143 (223)
|.+|+..|..+..|.+- + ..+..+-+... +...+.+.+.|+...++=.+..++. ++ +.||++|-++-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-- 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-- 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC--
Confidence 46788888877776542 3 13344433331 2233344445665544433344433 66 88999887621
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
|. ......-+..+-+.|+|||.+++.|
T Consensus 79 H~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HS--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CC--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 11 1223355666777899999999976
No 175
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=93.44 E-value=0.11 Score=46.41 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=27.8
Q ss_pred hccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCC
Q 027471 62 NGMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPI 101 (223)
Q Consensus 62 ~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~ 101 (223)
+.+.+..+ .+|||+|||+|.++.+|+++ .|+++.+.+.
T Consensus 36 ~~l~~~~~--~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~ 75 (272)
T PRK00274 36 DAAGPQPG--DNVLEIGPGLGALTEPLLERAAKVTAVEIDRD 75 (272)
T ss_pred HhcCCCCc--CeEEEeCCCccHHHHHHHHhCCcEEEEECCHH
Confidence 34444443 57999999999999999887 4666666544
No 176
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=93.40 E-value=0.26 Score=44.96 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=66.7
Q ss_pred cCCCCCCceEEEeeCCchHHHHHHhh----CC-CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCCCCcchh
Q 027471 64 MGINWSFVRNVMDMRAVYGGFAAALK----DL-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNTYPRTYD 134 (223)
Q Consensus 64 l~i~~~~iRnvLDmgaG~GgFAA~L~----~~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~tyPrtyD 134 (223)
++|..| -.|||.|.|.|.++++|+ +. .|+..-.-+....-.++-+-+-||.- ...|-|+.. ++..||
T Consensus 90 ~gi~pg--~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~--~~~~vD 165 (256)
T COG2519 90 LGISPG--SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI--DEEDVD 165 (256)
T ss_pred cCCCCC--CEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc--cccccC
Confidence 345554 579999999999999998 33 46666553332221222222226654 223433332 334666
Q ss_pred hhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe-ccHHHHHHHHHHHHhCCCe
Q 027471 135 LLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR-DDAETIVEVEDLVKSLHWD 190 (223)
Q Consensus 135 llH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~-D~~~~~~~i~~i~~~l~W~ 190 (223)
.+-.+ ..+ --.+|--++.+|+|||.+++= -..+.+.+.-.-++..+|.
T Consensus 166 av~LD-----mp~---PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 166 AVFLD-----LPD---PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred EEEEc-----CCC---hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 55443 221 128889999999999999775 4444444444444444664
No 177
>PLN02823 spermine synthase
Probab=93.05 E-value=0.13 Score=48.11 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=54.5
Q ss_pred CCceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHhh------Cc----ccccc-cccccCCCCCcchhhh
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYER------GL----FGLYH-DWCESFNTYPRTYDLL 136 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eR------GL----i~~~~-dwce~f~tyPrtyDll 136 (223)
..-++||-+|+|.|+.++.+.+. ++--+.++..+.. -++++.+. ++ +-++. |=-+-+..-++.||+|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~-vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE-VVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH-HHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 35689999999999999988775 3433333333332 22222211 11 11111 1011112234789998
Q ss_pred hhhhhhccccc-ccc---hhHHHH-hhhhcccCCcEEEEe
Q 027471 137 HADHLFSTIKK-RCS---LKAVVA-EVDRILRPDGNLILR 171 (223)
Q Consensus 137 H~~~lfs~~~~-rC~---i~~vl~-E~DRILRPgG~~ii~ 171 (223)
=++ ++..... .|. -..++. .+.|.|+|||.+++.
T Consensus 181 i~D-~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 181 IGD-LADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred Eec-CCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 876 3332111 120 114455 689999999999875
No 178
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=92.82 E-value=0.11 Score=48.34 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=56.9
Q ss_pred EEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcc--cccc-c---ccccCCC---CC---------cc
Q 027471 73 NVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLF--GLYH-D---WCESFNT---YP---------RT 132 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi--~~~~-d---wce~f~t---yP---------rt 132 (223)
.|||++||+|.|+-+|.+. .|+.+-..+.......+-+...|+- .++. | +...+.. ++ ..
T Consensus 200 ~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYN 279 (353)
T ss_pred cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccccccCC
Confidence 3999999999999999875 4555555443322222222223431 1111 1 1100000 00 01
Q ss_pred hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHH-HHHHHHHHHhCCCeeE
Q 027471 133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAET-IVEVEDLVKSLHWDVR 192 (223)
Q Consensus 133 yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~-~~~i~~i~~~l~W~~~ 192 (223)
||+|-.+ .+|..+..-++ +.|++|++.++++=+..+ ...++.+.+. |++.
T Consensus 280 ~d~v~lD------PPR~G~~~~~l--~~l~~~~~ivYvsC~p~tlaRDl~~L~~~--Y~l~ 330 (353)
T TIGR02143 280 CSTIFVD------PPRAGLDPDTC--KLVQAYERILYISCNPETLKANLEQLSET--HRVE 330 (353)
T ss_pred CCEEEEC------CCCCCCcHHHH--HHHHcCCcEEEEEcCHHHHHHHHHHHhcC--cEEE
Confidence 4444333 23544332222 345669999999955555 4567766655 7654
No 179
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=92.44 E-value=0.14 Score=47.06 Aligned_cols=97 Identities=16% Similarity=0.152 Sum_probs=61.7
Q ss_pred CceEEEeeCCchHHHHHHhhCCCe---EEEEecCCCCCCChhhHHhhCccc--ccccccccCCCCCcchhhhhhhhhhcc
Q 027471 70 FVRNVMDMRAVYGGFAAALKDLKV---WVMNVVPIESPDTLPIIYERGLFG--LYHDWCESFNTYPRTYDLLHADHLFST 144 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~~V---~vmnv~p~~~~~~l~~i~eRGLi~--~~~dwce~f~tyPrtyDllH~~~lfs~ 144 (223)
..-.++|+||+.|..++.|+..+| +.|..+--... .-+-+.+-++.- .+.| -|-+++-.+++|||-++ +=.|
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~-s~~~~qdp~i~~~~~v~D-EE~Ldf~ens~DLiisS-lslH 148 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIK-SCRDAQDPSIETSYFVGD-EEFLDFKENSVDLIISS-LSLH 148 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHH-HhhccCCCceEEEEEecc-hhcccccccchhhhhhh-hhhh
Confidence 467899999999999999999976 33443222111 111122234433 2333 13334344999998876 3335
Q ss_pred cccccchhHHHHhhhhcccCCcEEEEe
Q 027471 145 IKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 145 ~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
|.+. ++.-|.-.--+|+|.|.||-+
T Consensus 149 W~Nd--LPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 149 WTND--LPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhcc--CchHHHHHHHhcCCCccchhH
Confidence 6653 456677888899999999987
No 180
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.08 E-value=0.11 Score=44.85 Aligned_cols=41 Identities=24% Similarity=0.424 Sum_probs=35.1
Q ss_pred CcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 130 PRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 130 PrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
|++.|+|-|.++..|..-+. -...+.|-.|+|||||++-+.
T Consensus 45 dns~d~iyaeHvlEHlt~~E-g~~alkechr~Lrp~G~LriA 85 (185)
T COG4627 45 DNSVDAIYAEHVLEHLTYDE-GTSALKECHRFLRPGGKLRIA 85 (185)
T ss_pred CcchHHHHHHHHHHHHhHHH-HHHHHHHHHHHhCcCcEEEEE
Confidence 49999999999999877532 337899999999999999887
No 181
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=91.50 E-value=1 Score=40.23 Aligned_cols=126 Identities=12% Similarity=0.145 Sum_probs=75.4
Q ss_pred eEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhccccccc
Q 027471 72 RNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFSTIKKRC 149 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs~~~~rC 149 (223)
=++||+||=....+..-..- +|+.+.+-|.+..-.-|=-++| ++|+=+ ..||+|.|+.|+....+--
T Consensus 53 lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~~I~qqDFm~r-----------plp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWFDVTRIDLNSQHPGILQQDFMER-----------PLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred ceEEeecccCCCCcccccCceeeEEeecCCCCCCceeeccccC-----------CCCCCcccceeEEEEEEEEeeCCCHH
Confidence 46999999844433322211 5777777663322111111222 233333 6899999998887655321
Q ss_pred chhHHHHhhhhcccCCcE-----EEEeccHH--------HHHHHHHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471 150 SLKAVVAEVDRILRPDGN-----LILRDDAE--------TIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 208 (223)
Q Consensus 150 ~i~~vl~E~DRILRPgG~-----~ii~D~~~--------~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~ 208 (223)
.--..+.=..+.|||+|. +.|--+.. ..+.++.|+.+|...........+=.+..++|+
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~ 193 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRKS 193 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEeec
Confidence 223667778899999999 55542222 136888999999999865544445555556653
No 182
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=91.47 E-value=0.15 Score=45.91 Aligned_cols=119 Identities=15% Similarity=0.240 Sum_probs=63.6
Q ss_pred ccCCCCCCceEEEeeCCchHHHHHHhhC----C-CeEEEEecCCCCCCChhhHHhhCccc----ccccccc-cCCC-CCc
Q 027471 63 GMGINWSFVRNVMDMRAVYGGFAAALKD----L-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCE-SFNT-YPR 131 (223)
Q Consensus 63 ~l~i~~~~iRnvLDmgaG~GgFAA~L~~----~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce-~f~t-yPr 131 (223)
.|+|.+| ..|++-|.|.|++..+|+. . .|...-+-+.-.....+-+.+-||.. ...|.|+ -|.. ...
T Consensus 35 ~l~i~pG--~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~ 112 (247)
T PF08704_consen 35 RLDIRPG--SRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELES 112 (247)
T ss_dssp HTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TT
T ss_pred HcCCCCC--CEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccC
Confidence 4456665 5799999999999988874 3 35555442111111233334556643 3557773 3532 335
Q ss_pred chhhhhhhhhhcccccccchhHHHHhhhhcc-cCCcEEEE-eccHHHHHHHHHHHHhCCCee
Q 027471 132 TYDLLHADHLFSTIKKRCSLKAVVAEVDRIL-RPDGNLIL-RDDAETIVEVEDLVKSLHWDV 191 (223)
Q Consensus 132 tyDllH~~~lfs~~~~rC~i~~vl~E~DRIL-RPgG~~ii-~D~~~~~~~i~~i~~~l~W~~ 191 (223)
.+|.+.. ...+- -.++--+.++| ||||.+.. +-..+.+.+.-.-++...|.-
T Consensus 113 ~~DavfL-----Dlp~P---w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~ 166 (247)
T PF08704_consen 113 DFDAVFL-----DLPDP---WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTD 166 (247)
T ss_dssp SEEEEEE-----ESSSG---GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEE
T ss_pred cccEEEE-----eCCCH---HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCee
Confidence 6664433 33321 26777888999 99999855 555555544444455566754
No 183
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=91.40 E-value=2 Score=41.01 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=52.5
Q ss_pred CceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCC--Ccchhhhhhhhhhccccc
Q 027471 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTY--PRTYDLLHADHLFSTIKK 147 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~ty--PrtyDllH~~~lfs~~~~ 147 (223)
.-.++||+||..|||.-.|.+++.-|..| |....-+.+.+-+.+-.+.. ..|..- ++.+|++-|+-
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AV---D~g~l~~~L~~~~~V~h~~~--d~fr~~p~~~~vDwvVcDm------- 278 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAV---DNGPMAQSLMDTGQVEHLRA--DGFKFRPPRKNVDWLVCDM------- 278 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEE---echhcCHhhhCCCCEEEEec--cCcccCCCCCCCCEEEEec-------
Confidence 45689999999999999999998554444 21111122233333221111 133333 36789888872
Q ss_pred ccchhHHHHhhhhcccCC--cEEEEe
Q 027471 148 RCSLKAVVAEVDRILRPD--GNLILR 171 (223)
Q Consensus 148 rC~i~~vl~E~DRILRPg--G~~ii~ 171 (223)
.|.-..+..=|-+-|..| ..+|+.
T Consensus 279 ve~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 279 VEKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred ccCHHHHHHHHHHHHhcCcccEEEEE
Confidence 233335555566666655 578887
No 184
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=91.03 E-value=0.22 Score=43.67 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=23.5
Q ss_pred CceEEEeeCCchHHHHHHhhCC--CeEEEEec
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVV 99 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~ 99 (223)
.-.+|||+|||.|.+++.|.++ .|+++.+.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d 60 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEID 60 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECC
Confidence 3568999999999999999887 44555443
No 185
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=90.83 E-value=0.16 Score=46.57 Aligned_cols=42 Identities=17% Similarity=0.369 Sum_probs=35.0
Q ss_pred cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
..||+|-|-++|.+... -....++..+.+.|+|||++++-..
T Consensus 222 ~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 222 GPFDAIFCRNVMIYFDK-TTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred CCcceeeHhhHHhcCCH-HHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 88999999999877643 2346999999999999999988643
No 186
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=90.75 E-value=1.3 Score=39.15 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=81.0
Q ss_pred HhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHH--HhhCCCeEEEEecCCCCCC---ChhhHHhhCccc--cc
Q 027471 47 ADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAA--ALKDLKVWVMNVVPIESPD---TLPIIYERGLFG--LY 119 (223)
Q Consensus 47 ~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA--~L~~~~V~vmnv~p~~~~~---~l~~i~eRGLi~--~~ 119 (223)
...+.|.+++-. =+.........-.+++|+|+|-|-=+- |+...++- +.++.....+ -.+++.|=||.. ++
T Consensus 45 ~~~e~~~rHilD-Sl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~ 122 (215)
T COG0357 45 DPEELWQRHILD-SLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLENVEIV 122 (215)
T ss_pred CHHHHHHHHHHH-HhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCCCeEEe
Confidence 456788877754 121111111114789999999885222 23333333 3344444432 445667778863 55
Q ss_pred ccccccCCCCC--cc-hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEE---eccHHHHHHHHHHHHhCCCeeEE
Q 027471 120 HDWCESFNTYP--RT-YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLIL---RDDAETIVEVEDLVKSLHWDVRM 193 (223)
Q Consensus 120 ~dwce~f~tyP--rt-yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii---~D~~~~~~~i~~i~~~l~W~~~~ 193 (223)
| ++-++|. .. ||++-|- .-+++..++.=.-..|++||.++. .--.+.+.++++-.....+.+..
T Consensus 123 ~---~RaE~~~~~~~~~D~vtsR-------Ava~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~ 192 (215)
T COG0357 123 H---GRAEEFGQEKKQYDVVTSR-------AVASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEK 192 (215)
T ss_pred h---hhHhhcccccccCcEEEee-------hccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEE
Confidence 5 5666666 23 9998873 124455555556788999998753 34455667777777888787764
Q ss_pred ee
Q 027471 194 IY 195 (223)
Q Consensus 194 ~~ 195 (223)
..
T Consensus 193 ~~ 194 (215)
T COG0357 193 VF 194 (215)
T ss_pred EE
Confidence 43
No 187
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=90.60 E-value=0.14 Score=48.53 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=51.8
Q ss_pred eEEEeeCCchHHHHHHhhCC-C---eEEEEecCCCCCCChhhHHh-hCccc--cccccccc-CCCCCcchhhhhhhhhhc
Q 027471 72 RNVMDMRAVYGGFAAALKDL-K---VWVMNVVPIESPDTLPIIYE-RGLFG--LYHDWCES-FNTYPRTYDLLHADHLFS 143 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~-~---V~vmnv~p~~~~~~l~~i~e-RGLi~--~~~dwce~-f~tyPrtyDllH~~~lfs 143 (223)
.+|||+.||+|.|+..++.. + |+...+.|.-.. ..+.+.+ -|+-. +++.-++. ++. ...||+|..+- |
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~-~a~~N~~~N~~~~~~v~~~Da~~~l~~-~~~fD~V~lDP-~- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVE-LIKKNLELNGLENEKVFNKDANALLHE-ERKFDVVDIDP-F- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCceEEEhhhHHHHHhh-cCCCCEEEECC-C-
Confidence 36999999999999998543 4 565555443222 2222222 23322 22211111 111 45699988862 3
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
.+. ..++-..-+.+||||.+.++
T Consensus 135 ----Gs~-~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ----GSP-APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----CCc-HHHHHHHHHHhcCCCEEEEE
Confidence 222 24444445778999999998
No 188
>PRK13699 putative methylase; Provisional
Probab=90.36 E-value=0.73 Score=40.45 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=34.2
Q ss_pred hhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE--Ee-e----------cCCCeeEEEEEec
Q 027471 151 LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR--MI-Y----------TNDNQGMLCVHKT 208 (223)
Q Consensus 151 i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~--~~-~----------~~~~e~~L~~~K~ 208 (223)
++.++.|+.|||+|||.+++--....+..+...++...|... +. + +...|-++++.|.
T Consensus 51 ~~~~l~E~~RVLKpgg~l~if~~~~~~~~~~~al~~~GF~l~~~IiW~K~~~~~~~~~~~~~E~i~~~~k~ 121 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSFYGWNRVDRFMAAWKNAGFSVVGHLVFTKNYTSKAAYVGYRHECAYILAKG 121 (227)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHHHCCCEEeeEEEEECCCCCCCCCCccceeEEEEEECC
Confidence 357899999999999999863222223334444444444432 10 0 1234777777775
No 189
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=90.33 E-value=0.13 Score=44.57 Aligned_cols=121 Identities=18% Similarity=0.264 Sum_probs=62.5
Q ss_pred hhHhhhhHHHHHhhhhh-hccC-CCCCCceEEEeeCCchH----HHHHHhhC-----C----CeEEEEecCCCCCCChhh
Q 027471 45 FTADYQHWKNVVSKSYL-NGMG-INWSFVRNVMDMRAVYG----GFAAALKD-----L----KVWVMNVVPIESPDTLPI 109 (223)
Q Consensus 45 f~~D~~~W~~~v~~~Y~-~~l~-i~~~~iRnvLDmgaG~G----gFAA~L~~-----~----~V~vmnv~p~~~~~~l~~ 109 (223)
|=-|..+|..-..+ .+ ..+. ...+.-=+|...||++| +.|-.|.+ . .|+...+.+. .++.
T Consensus 5 FFRd~~~f~~l~~~-vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~----~L~~ 79 (196)
T PF01739_consen 5 FFRDPEQFEALRDE-VLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPS----ALEK 79 (196)
T ss_dssp TTTTTTHHHHHHHH-HH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HH----HHHH
T ss_pred ccCCHHHHHHHHHH-HHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHH----HHHH
Confidence 55667778777665 44 2332 23345667999999999 45555555 1 2233333221 1221
Q ss_pred HHh---------hCccc---------------------------ccccccccCCCCCcchhhhhhhhhhcccccccchhH
Q 027471 110 IYE---------RGLFG---------------------------LYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKA 153 (223)
Q Consensus 110 i~e---------RGLi~---------------------------~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~ 153 (223)
+. |+++. ..||.++ ....+.-||+|-|-+++-.... -....
T Consensus 80 -Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CRNVlIYF~~-~~~~~ 156 (196)
T PF01739_consen 80 -ARAGIYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCRNVLIYFDP-ETQQR 156 (196)
T ss_dssp -HHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE-SSGGGS-H-HHHHH
T ss_pred -HHhCCCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEecCEEEEeCH-HHHHH
Confidence 11 12211 2344443 2223488999999999886653 23468
Q ss_pred HHHhhhhcccCCcEEEEecc
Q 027471 154 VVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 154 vl~E~DRILRPgG~~ii~D~ 173 (223)
++--+.+.|+|||++++-..
T Consensus 157 vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 157 VLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp HHHHHGGGEEEEEEEEE-TT
T ss_pred HHHHHHHHcCCCCEEEEecC
Confidence 99999999999999999744
No 190
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.26 E-value=1.1 Score=40.58 Aligned_cols=112 Identities=28% Similarity=0.402 Sum_probs=69.5
Q ss_pred CceEEEeeCCchHHHHHHhhCCC---eEEEEecCCCC-----CCChhhHHhhCcccccccccccCCCCCcchhhhhhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDLK---VWVMNVVPIES-----PDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHL 141 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~~---V~vmnv~p~~~-----~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~l 141 (223)
+-+++||+|+-+|||--.|.+++ |.++.|.--+- .+-+-+.+||==+--+.. +. +..-.|++-|+-.
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~--~~---~~~~~d~~v~DvS 153 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTP--ED---FTEKPDLIVIDVS 153 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCH--HH---cccCCCeEEEEee
Confidence 47899999999999999999984 66666633111 111112222211100000 00 1224567777644
Q ss_pred hcccccccchhHHHHhhhhcccCCcEEEEe-------------------cc---HHHHHHHHHHHHhCCCeeE
Q 027471 142 FSTIKKRCSLKAVVAEVDRILRPDGNLILR-------------------DD---AETIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~-------------------D~---~~~~~~i~~i~~~l~W~~~ 192 (223)
|- ++..+|-.+..+|.|+|.++.- |+ ..++.++++.++...|.+.
T Consensus 154 FI------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~ 220 (245)
T COG1189 154 FI------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVK 220 (245)
T ss_pred hh------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEe
Confidence 42 2347888999999999988876 33 2346788889999999986
No 191
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=89.95 E-value=0.39 Score=42.40 Aligned_cols=30 Identities=17% Similarity=0.326 Sum_probs=23.8
Q ss_pred ceEEEeeCCchHHHHHHhhCCC--eEEEEecC
Q 027471 71 VRNVMDMRAVYGGFAAALKDLK--VWVMNVVP 100 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~~--V~vmnv~p 100 (223)
-.+|||+|||.|.++..|.+++ |+++.+.+
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~ 61 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIELDP 61 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEECCH
Confidence 4689999999999999999874 55555543
No 192
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=89.87 E-value=0.84 Score=43.24 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=68.1
Q ss_pred CceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccc
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKK 147 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~ 147 (223)
.+...+|+|+|.|.-...+..+ .|-.+|+.....-.+.+... +|+=|--|.-|-.-| .=|+|.+.-+.++|.+
T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~----~gV~~v~gdmfq~~P-~~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA----PGVEHVAGDMFQDTP-KGDAIWMKWILHDWTD 251 (342)
T ss_pred cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc----CCcceecccccccCC-CcCeEEEEeecccCCh
Confidence 6899999999999999988776 46667774332222222222 334444455676644 3459999999999986
Q ss_pred c-cchhHHHHhhhhcccCCcEEEEecc
Q 027471 148 R-CSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 148 r-C~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
. | ..+|.=.---|+|||.+|+-|.
T Consensus 252 edc--vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 252 EDC--VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred HHH--HHHHHHHHHhCCCCCEEEEEec
Confidence 3 4 6777777788999999999755
No 193
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=89.61 E-value=0.76 Score=41.32 Aligned_cols=98 Identities=20% Similarity=0.365 Sum_probs=65.9
Q ss_pred CCceEEEeeCCchHHHHHHhhCC-----CeEEEEecCCCCCCChhhHHhhC-cccccccccccCCCCCcchhhh--hhhh
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDL-----KVWVMNVVPIESPDTLPIIYERG-LFGLYHDWCESFNTYPRTYDLL--HADH 140 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~-----~V~vmnv~p~~~~~~l~~i~eRG-Li~~~~dwce~f~tyPrtyDll--H~~~ 140 (223)
..-..||-+||..|+...++.|- -|.++-++|....+.+.++-.|- +++++.|= ++|..|-++ ..+-
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DA-----r~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDA-----RHPEKYRMLVEMVDV 146 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-T-----TSGGGGTTTS--EEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccC-----CChHHhhcccccccE
Confidence 34578999999999998888653 47788998887777777777764 56788772 244333221 2233
Q ss_pred hhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 141 LFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 141 lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
+|.....+-..+-++.-++.-||+||++++.
T Consensus 147 I~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 147 IFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp EEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 4444444444557888888999999999997
No 194
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=88.86 E-value=0.25 Score=46.80 Aligned_cols=106 Identities=21% Similarity=0.208 Sum_probs=62.5
Q ss_pred hhhccCCCC--CCceEEEeeCCchHH---HHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCC--CC-c
Q 027471 60 YLNGMGINW--SFVRNVMDMRAVYGG---FAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT--YP-R 131 (223)
Q Consensus 60 Y~~~l~i~~--~~iRnvLDmgaG~Gg---FAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t--yP-r 131 (223)
|-+.+--++ -+-++|||+|||+|= |||.--.+.|..+-.+..- .-..+++.+-|+-.++..--+.... -| .
T Consensus 48 Yr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~e 126 (346)
T KOG1499|consen 48 YRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVE 126 (346)
T ss_pred HHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCcc
Confidence 665542222 256789999999996 5554444556655333222 2267788888884433321122222 45 6
Q ss_pred chhhhhhhhhhcccccccch-----hHHHHhhhhcccCCcEEEEe
Q 027471 132 TYDLLHADHLFSTIKKRCSL-----KAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 132 tyDllH~~~lfs~~~~rC~i-----~~vl~E~DRILRPgG~~ii~ 171 (223)
-.|+|=+. |..-|++ +-||.-=||-|.|||.++=+
T Consensus 127 KVDiIvSE-----WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 127 KVDIIVSE-----WMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred ceeEEeeh-----hhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 67776542 3333433 36777789999999987744
No 195
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.72 E-value=0.29 Score=44.14 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=62.5
Q ss_pred CceEEEeeCC--chHHHHHHhh--CC-CeEEEEecCCCCCCChhhHHhhCccc----ccccccccCCC----CC-cchhh
Q 027471 70 FVRNVMDMRA--VYGGFAAALK--DL-KVWVMNVVPIESPDTLPIIYERGLFG----LYHDWCESFNT----YP-RTYDL 135 (223)
Q Consensus 70 ~iRnvLDmga--G~GgFAA~L~--~~-~V~vmnv~p~~~~~~l~~i~eRGLi~----~~~dwce~f~t----yP-rtyDl 135 (223)
.-++.||+|. ||+.+|-||+ +. .|.++.+-+....-..+++--.|..- +..+=||++.. ++ .|||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 3567889884 6666555553 44 46666653332233677777777632 33444555544 55 99998
Q ss_pred hhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 136 LHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 136 lH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
+-.+ +++..|. ....+.=|.|||||.+++.
T Consensus 153 aFvD----adK~nY~--~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVD----ADKDNYS--NYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEc----cchHHHH--HHHHHHHhhcccccEEEEe
Confidence 7654 5565554 7888888999999999998
No 196
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=88.21 E-value=0.76 Score=42.32 Aligned_cols=40 Identities=15% Similarity=0.334 Sum_probs=28.8
Q ss_pred cchhhhhhhhhhcccc----cccchhHHHHhhhhcccCCcEEEEe
Q 027471 131 RTYDLLHADHLFSTIK----KRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 131 rtyDllH~~~lfs~~~----~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
+-||+|-|- ..+.|. +.-.+..++--+-|.|+|||++|+-
T Consensus 165 ~~fDiIlcL-SiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 165 PEFDIILCL-SITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccEEEEE-EeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 447776664 223333 2345678999999999999999997
No 197
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=87.78 E-value=1.8 Score=39.69 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=77.3
Q ss_pred CCCCCceEEEeeCCchHHHHHHhhCCC-eEEEEecCCCCCCChhhHHhhCcccccccccc-------------cCCCCCc
Q 027471 66 INWSFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESPDTLPIIYERGLFGLYHDWCE-------------SFNTYPR 131 (223)
Q Consensus 66 i~~~~iRnvLDmgaG~GgFAA~L~~~~-V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce-------------~f~tyPr 131 (223)
+..+.-|.||=+|.|-||.++.+.+.+ |-=+-+|..+.. - +.+.|..++..+.++. -+..++.
T Consensus 72 ~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~-V--i~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~ 148 (282)
T COG0421 72 LAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPA-V--IELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE 148 (282)
T ss_pred hhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHH-H--HHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC
Confidence 345666899999999999999999985 322222333221 1 2234555554442221 1122667
Q ss_pred chhhhhhhhhhccccc--ccchhHHHHhhhhcccCCcEEEEeccH-----HHHHHHHHHHHhCCCeeEEe------ecCC
Q 027471 132 TYDLLHADHLFSTIKK--RCSLKAVVAEVDRILRPDGNLILRDDA-----ETIVEVEDLVKSLHWDVRMI------YTND 198 (223)
Q Consensus 132 tyDllH~~~lfs~~~~--rC~i~~vl~E~DRILRPgG~~ii~D~~-----~~~~~i~~i~~~l~W~~~~~------~~~~ 198 (223)
+||+|=++ ....... .=.-..+.-...|.|+|+|.++..... +.+..+.+-.+++.+..... ...+
T Consensus 149 ~fDvIi~D-~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g 227 (282)
T COG0421 149 KFDVIIVD-STDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSG 227 (282)
T ss_pred cCCEEEEc-CCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCC
Confidence 89997665 1111110 001126777889999999999998211 22344555566664443221 1223
Q ss_pred CeeEEEEEe
Q 027471 199 NQGMLCVHK 207 (223)
Q Consensus 199 ~e~~L~~~K 207 (223)
-..+.++.+
T Consensus 228 ~~~f~~~s~ 236 (282)
T COG0421 228 FWGFIVASF 236 (282)
T ss_pred ceEEEEeec
Confidence 367777773
No 198
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=87.11 E-value=0.43 Score=42.05 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=46.4
Q ss_pred CceEEEeeCCchHHH--HHHhhC-CCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccc
Q 027471 70 FVRNVMDMRAVYGGF--AAALKD-LKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIK 146 (223)
Q Consensus 70 ~iRnvLDmgaG~GgF--AA~L~~-~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~ 146 (223)
.-+.|+|.|||+|-+ ||+|.. .-|.++.+-|.... ...-+.++ |.|-+---|...+.+..-+|.+=.+-=|..+.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~e-i~r~N~~~-l~g~v~f~~~dv~~~~~~~dtvimNPPFG~~~ 122 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALE-IARANAEE-LLGDVEFVVADVSDFRGKFDTVIMNPPFGSQR 122 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHH-HHHHHHHh-hCCceEEEEcchhhcCCccceEEECCCCcccc
Confidence 356799999999975 455554 57888887554333 34445555 44433333456777888888655554554444
No 199
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=86.82 E-value=0.24 Score=45.22 Aligned_cols=30 Identities=23% Similarity=0.395 Sum_probs=23.4
Q ss_pred eEEEeeCCchHHHHHHhhCC--CeEEEEecCC
Q 027471 72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPI 101 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~ 101 (223)
.+|||+|||.|.+..+|.++ .|+++-+.+.
T Consensus 38 ~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~ 69 (294)
T PTZ00338 38 DTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPR 69 (294)
T ss_pred CEEEEecCchHHHHHHHHHhCCcEEEEECCHH
Confidence 47999999999999999877 4566555443
No 200
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=86.59 E-value=0.14 Score=44.59 Aligned_cols=107 Identities=13% Similarity=0.185 Sum_probs=52.9
Q ss_pred hhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhC--CC--eEEEEecCCCCCCChhhHHh----hCcc
Q 027471 45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKD--LK--VWVMNVVPIESPDTLPIIYE----RGLF 116 (223)
Q Consensus 45 f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~--~~--V~vmnv~p~~~~~~l~~i~e----RGLi 116 (223)
|......-++++.+ . +.. -.+|+||-||.|.|+-.+++ +. |++..+-|..-. .+..+.+ .+.+
T Consensus 84 fs~rl~~Er~Ri~~-~-----v~~--~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~-~L~~Ni~lNkv~~~i 154 (200)
T PF02475_consen 84 FSPRLSTERRRIAN-L-----VKP--GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVE-YLKENIRLNKVENRI 154 (200)
T ss_dssp --GGGHHHHHHHHT-C-------T--T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHH-HHHHHHHHTT-TTTE
T ss_pred EccccHHHHHHHHh-c-----CCc--ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHH-HHHHHHHHcCCCCeE
Confidence 34444444555543 1 233 36899999999999988877 44 555444332211 2222222 2223
Q ss_pred cccccccccCCCCCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEE
Q 027471 117 GLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNL 168 (223)
Q Consensus 117 ~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ 168 (223)
-.++.-|..|.. ...||-+.+. +.+.+ ..+|-+.-+++|+||.+
T Consensus 155 ~~~~~D~~~~~~-~~~~drvim~-----lp~~~--~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 155 EVINGDAREFLP-EGKFDRVIMN-----LPESS--LEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEES-GGG----TT-EEEEEE-------TSSG--GGGHHHHHHHEEEEEEE
T ss_pred EEEcCCHHHhcC-ccccCEEEEC-----ChHHH--HHHHHHHHHHhcCCcEE
Confidence 233433444433 5777744443 33322 36788888999999976
No 201
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=86.20 E-value=0.57 Score=42.53 Aligned_cols=79 Identities=22% Similarity=0.390 Sum_probs=50.7
Q ss_pred ceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHHhhCcccccccccccCCC----------CCcc---hhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNT----------YPRT---YDLLH 137 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~t----------yPrt---yDllH 137 (223)
--++||+|||-|-..-.|+. +.+-+|.--|.-...+ +++- .-.| ||+|-
T Consensus 113 ~~~lLDlGAGdGeit~~m~p---------------~feevyATElS~tMr~---rL~kk~ynVl~~~ew~~t~~k~dli~ 174 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAP---------------TFEEVYATELSWTMRD---RLKKKNYNVLTEIEWLQTDVKLDLIL 174 (288)
T ss_pred CeeEEeccCCCcchhhhhcc---------------hHHHHHHHHhhHHHHH---HHhhcCCceeeehhhhhcCceeehHH
Confidence 46799999999965443332 3333444333222211 1111 1244 99999
Q ss_pred hhhhhcccccccchh-HHHHhhhhcccC-CcEEEEe
Q 027471 138 ADHLFSTIKKRCSLK-AVVAEVDRILRP-DGNLILR 171 (223)
Q Consensus 138 ~~~lfs~~~~rC~i~-~vl~E~DRILRP-gG~~ii~ 171 (223)
|-+++. ||.-+ .+|.++.-+|+| .|.+|+.
T Consensus 175 clNlLD----Rc~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 175 CLNLLD----RCFDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHHHHH----hhcChHHHHHHHHHHhccCCCcEEEE
Confidence 987765 77655 788899999999 9999987
No 202
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=84.00 E-value=2.2 Score=37.78 Aligned_cols=139 Identities=18% Similarity=0.189 Sum_probs=76.1
Q ss_pred CCceEEEeeCCchHHHHHHhhCCC-eEEEEecCCCCCCChhhHHh------hC----ccccccccc-ccCCCCCc-chhh
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDLK-VWVMNVVPIESPDTLPIIYE------RG----LFGLYHDWC-ESFNTYPR-TYDL 135 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~~-V~vmnv~p~~~~~~l~~i~e------RG----Li~~~~dwc-e~f~tyPr-tyDl 135 (223)
.+-++||=+|.|-|+.++.+.+.+ +--+.++..+.. -++++.+ .+ -+-++++-+ +-+...++ +||+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~-Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPE-VVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HH-HHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChH-HHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 368999999999999999999875 333333333321 2222111 01 111222211 11233676 9999
Q ss_pred hhhhhhhcccc--cccchhHHHHhhhhcccCCcEEEEec-----cHHHHHHHHHHHHhCCCeeEEee----c--CCCeeE
Q 027471 136 LHADHLFSTIK--KRCSLKAVVAEVDRILRPDGNLILRD-----DAETIVEVEDLVKSLHWDVRMIY----T--NDNQGM 202 (223)
Q Consensus 136 lH~~~lfs~~~--~rC~i~~vl~E~DRILRPgG~~ii~D-----~~~~~~~i~~i~~~l~W~~~~~~----~--~~~e~~ 202 (223)
|=.+ ++.... ...--..++..+.|.|+|||.+++.- ..+....+.+.+++..-.+.... + +..-.+
T Consensus 154 Ii~D-~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vP~~~~~~~~~ 232 (246)
T PF01564_consen 154 IIVD-LTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPYTAYVPSYGSGWWSF 232 (246)
T ss_dssp EEEE-SSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEEEEECTTSCSSEEEE
T ss_pred EEEe-CCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEEEEEcCeecccceeE
Confidence 7654 222111 01112378889999999999999862 23445666666777766665432 1 122356
Q ss_pred EEEEecc
Q 027471 203 LCVHKTY 209 (223)
Q Consensus 203 L~~~K~~ 209 (223)
.+|.|..
T Consensus 233 ~~~s~~~ 239 (246)
T PF01564_consen 233 ASASKDI 239 (246)
T ss_dssp EEEESST
T ss_pred EEEeCCC
Confidence 7777654
No 203
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=83.08 E-value=1.1 Score=38.96 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=34.7
Q ss_pred CCCCcchhhhhhhhhhcccc-----c-ccch--hHHHHhhhhcccCCcEEEEecc
Q 027471 127 NTYPRTYDLLHADHLFSTIK-----K-RCSL--KAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 127 ~tyPrtyDllH~~~lfs~~~-----~-rC~i--~~vl~E~DRILRPgG~~ii~D~ 173 (223)
..|.++||.+-|-+.+.|.. + -+.+ ..-|.++-|+|||||.+++.-+
T Consensus 58 ~~y~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP 112 (177)
T PF03269_consen 58 QKYAGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP 112 (177)
T ss_pred HHhhccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence 35999999988877776432 1 1111 2678999999999999999833
No 204
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=82.63 E-value=4.6 Score=36.35 Aligned_cols=130 Identities=17% Similarity=0.348 Sum_probs=85.8
Q ss_pred cCCCCccchhHhhhhHHHHHhh---hhhhccC-CCCCCceEEEeeCCchHHHHHHhhCC---C-eEEEEecCCCCCCChh
Q 027471 37 YGKAAPEDFTADYQHWKNVVSK---SYLNGMG-INWSFVRNVMDMRAVYGGFAAALKDL---K-VWVMNVVPIESPDTLP 108 (223)
Q Consensus 37 ~~~~~~~~f~~D~~~W~~~v~~---~Y~~~l~-i~~~~iRnvLDmgaG~GgFAA~L~~~---~-V~vmnv~p~~~~~~l~ 108 (223)
||..-.....+..+.|.-+-++ .-++.|. +.-..-..||=+||-.|+-+.++.+- | |.++-++|....+.+.
T Consensus 39 YGE~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~ 118 (231)
T COG1889 39 YGERIIKVEGEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLD 118 (231)
T ss_pred cCceeEEecCcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHH
Confidence 6532223334456677433322 2444443 33445678999999999999888664 5 7889999998888888
Q ss_pred hHHhhC-cccccccccccCCCCCcchhhh--hhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 109 IIYERG-LFGLYHDWCESFNTYPRTYDLL--HADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 109 ~i~eRG-Li~~~~dwce~f~tyPrtyDll--H~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
++.+|- +++++.| .++|.+|=.+ |.+-+|.....+-..+-+..-++.-|++||++++.
T Consensus 119 ~a~~R~Ni~PIL~D-----A~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 119 VAEKRPNIIPILED-----ARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred HHHhCCCceeeecc-----cCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEE
Confidence 888874 5777777 2355444332 33444554544555667788899999999999886
No 205
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=81.46 E-value=1.2 Score=39.99 Aligned_cols=118 Identities=17% Similarity=0.160 Sum_probs=57.9
Q ss_pred CceEEEeeCCchHHHHHHhhCC-CeEEEEecCCCCC-CC--hhhHHhhCccccccc-ccccCCC--CC-cchhhhhhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL-KVWVMNVVPIESP-DT--LPIIYERGLFGLYHD-WCESFNT--YP-RTYDLLHADHL 141 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~-~V~vmnv~p~~~~-~~--l~~i~eRGLi~~~~d-wce~f~t--yP-rtyDllH~~~l 141 (223)
.-++|||+|||.|...-+..+. + -.-.+.-++.. .. +.....++....-+. |-+.+-. -+ ...|||=++++
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~-~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWP-SLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhc-CceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 4678999999999765555432 1 11111112221 11 211222333332221 1111211 11 23499999999
Q ss_pred hcccccccchhHHHHhhhhcccCCcEEEEecc-----HHHHHHHHHHHHhCCCee
Q 027471 142 FSTIKKRCSLKAVVAEVDRILRPDGNLILRDD-----AETIVEVEDLVKSLHWDV 191 (223)
Q Consensus 142 fs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~-----~~~~~~i~~i~~~l~W~~ 191 (223)
++...+ -....++..+=+-+.+ ++||-++ -+.+.++.+.+....+.+
T Consensus 112 L~EL~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v 163 (274)
T PF09243_consen 112 LNELPS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHV 163 (274)
T ss_pred hhcCCc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCce
Confidence 987766 3334555444333444 7777644 224556666554444444
No 206
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=81.45 E-value=0.84 Score=37.51 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=19.0
Q ss_pred hhHHHHhhhhcccCCcEEEEe
Q 027471 151 LKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 151 i~~vl~E~DRILRPgG~~ii~ 171 (223)
+..++.|+.|||+|||.+++-
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~ 55 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIF 55 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHhhcCCCeeEEEE
Confidence 458999999999999999886
No 207
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=80.76 E-value=14 Score=32.95 Aligned_cols=124 Identities=15% Similarity=0.192 Sum_probs=66.2
Q ss_pred ceEEEeeCCchHHHHHHhhCC---CeEEEEe--cCCCCCCChhhHHhhC-ccc-ccccccccCCC-----------C-Cc
Q 027471 71 VRNVMDMRAVYGGFAAALKDL---KVWVMNV--VPIESPDTLPIIYERG-LFG-LYHDWCESFNT-----------Y-PR 131 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~---~V~vmnv--~p~~~~~~l~~i~eRG-Li~-~~~dwce~f~t-----------y-Pr 131 (223)
.-.+|++|||.|--.++|++. ++..|.. -|.-..-|++-+.-.+ .+- +..|.-..+.. | |-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 677999999999988888876 5665543 2321111333222222 111 11111111111 1 12
Q ss_pred chhhhhhhhhhcccc----cccchhHHHHhhhhcccCCcEEEEeccHH-HHHHHHHHHHhCCCeeEEe
Q 027471 132 TYDLLHADHLFSTIK----KRCSLKAVVAEVDRILRPDGNLILRDDAE-TIVEVEDLVKSLHWDVRMI 194 (223)
Q Consensus 132 tyDllH~~~lfs~~~----~rC~i~~vl~E~DRILRPgG~~ii~D~~~-~~~~i~~i~~~l~W~~~~~ 194 (223)
+.+=+-..++-+.|. .|.-++.++--++-||-|-|.|++---.. ...+|-++++.-.|.+...
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence 222232333333332 24446678888899999999998853322 2334555777788877643
No 208
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=79.84 E-value=1.2 Score=41.38 Aligned_cols=47 Identities=19% Similarity=0.394 Sum_probs=39.2
Q ss_pred cCCC-CC-cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 125 SFNT-YP-RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 125 ~f~t-yP-rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
.+.. |+ .+||..=+..+.||+..++.-..+|-|+-|+|||||...+.
T Consensus 94 ~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 94 ALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred hhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 4444 44 89999888888889988998899999999999999995553
No 209
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=78.32 E-value=0.98 Score=38.01 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=61.8
Q ss_pred ceEEEeeCCchHHHH--HHhhCCC-----------eEEEEecCCCCCCChhhHHhhCcccc---cccccccCCCCCcchh
Q 027471 71 VRNVMDMRAVYGGFA--AALKDLK-----------VWVMNVVPIESPDTLPIIYERGLFGL---YHDWCESFNTYPRTYD 134 (223)
Q Consensus 71 iRnvLDmgaG~GgFA--A~L~~~~-----------V~vmnv~p~~~~~~l~~i~eRGLi~~---~~dwce~f~tyPrtyD 134 (223)
-..++|==||+|++. |++...+ +...++.+.......+-+...|+-+. ...-...++..+.++|
T Consensus 29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~~d 108 (179)
T PF01170_consen 29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGSVD 108 (179)
T ss_dssp TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSBSC
T ss_pred CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCCCC
Confidence 357999999999987 4454443 33555544332212222233455332 2211223332347888
Q ss_pred hhhhhhhhccc-c----cccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEE
Q 027471 135 LLHADHLFSTI-K----KRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRM 193 (223)
Q Consensus 135 llH~~~lfs~~-~----~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~ 193 (223)
.|=++-=|..- . ..-....++-|+-|+|+|...++++..... ++.+....|....
T Consensus 109 ~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~~~~~----~~~~~~~~~~~~~ 168 (179)
T PF01170_consen 109 AIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTSNREL----EKALGLKGWRKRK 168 (179)
T ss_dssp EEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEESCCCH----HHHHTSTTSEEEE
T ss_pred EEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHH----HHHhcchhhceEE
Confidence 87775333211 0 112233789999999999666677766544 3444444666543
No 210
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=77.80 E-value=2.1 Score=39.58 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=22.7
Q ss_pred hhccCCCCCCceEEEeeCCchHHHHHHhhCC
Q 027471 61 LNGMGINWSFVRNVMDMRAVYGGFAAALKDL 91 (223)
Q Consensus 61 ~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~ 91 (223)
++.|.+.++. +++|.+||.||++.++++.
T Consensus 12 l~~L~~~pg~--~vlD~TlG~GGhS~~il~~ 40 (296)
T PRK00050 12 VDALAIKPDG--IYVDGTFGGGGHSRAILER 40 (296)
T ss_pred HHhhCCCCCC--EEEEeCcCChHHHHHHHHh
Confidence 3445555543 7999999999999999876
No 211
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=77.46 E-value=1.3 Score=34.58 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=16.9
Q ss_pred EEEeeCCchHHHHHHhhCC
Q 027471 73 NVMDMRAVYGGFAAALKDL 91 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~ 91 (223)
+++|+|||.|.++..++..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~ 19 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK 19 (143)
T ss_pred CEEEccCCccHHHHHHHHh
Confidence 4899999999999988766
No 212
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=76.82 E-value=2.1 Score=41.11 Aligned_cols=125 Identities=20% Similarity=0.167 Sum_probs=70.4
Q ss_pred hhHhhhhHHHHHhh-hhhhccCCCCCCceEEEeeCCchHHHHHHhhCCCe-EEEEe--cCCCCCCChhhHHhhCcccccc
Q 027471 45 FTADYQHWKNVVSK-SYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKV-WVMNV--VPIESPDTLPIIYERGLFGLYH 120 (223)
Q Consensus 45 f~~D~~~W~~~v~~-~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~V-~vmnv--~p~~~~~~l~~i~eRGLi~~~~ 120 (223)
+..+|.+|..+-.+ .++..+ + .-+.|||+=|-+|||+-+.+..|- -|.+| +..--.-..+-..--|+.+--|
T Consensus 195 ~g~kTGfFlDqR~~R~~l~~~-~---~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~ 270 (393)
T COG1092 195 DGLKTGFFLDQRDNRRALGEL-A---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRH 270 (393)
T ss_pred CcccceeeHHhHHHHHHHhhh-c---cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccce
Confidence 45677777444332 033222 1 267899999999999877777654 44444 3321111222223345544222
Q ss_pred cc--cccCCC---CCc---chhhhhhh-hhhcccccc-----cchhHHHHhhhhcccCCcEEEEecc
Q 027471 121 DW--CESFNT---YPR---TYDLLHAD-HLFSTIKKR-----CSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 121 dw--ce~f~t---yPr---tyDllH~~-~lfs~~~~r-----C~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
+| -..|.. +.+ +||+|-.+ --|+..++. -....++.+.=+||+|||.++++..
T Consensus 271 ~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 271 RFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred eeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 22 124444 334 89997663 123332221 1233889999999999999999843
No 213
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=76.62 E-value=0.85 Score=41.10 Aligned_cols=90 Identities=16% Similarity=0.180 Sum_probs=50.6
Q ss_pred eEEEeeCCchHHHHHHh---h-CCCeE-----EE-EecCCCCCCCh--------hhHHhhCcccccccccccCCCCC-cc
Q 027471 72 RNVMDMRAVYGGFAAAL---K-DLKVW-----VM-NVVPIESPDTL--------PIIYERGLFGLYHDWCESFNTYP-RT 132 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L---~-~~~V~-----vm-nv~p~~~~~~l--------~~i~eRGLi~~~~dwce~f~tyP-rt 132 (223)
-+.||+|+|+|=..+.+ . ..+.- -+ ++|.....+-. ..-++||=+.++.--| ++.+-+ .-
T Consensus 84 ~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDg-r~g~~e~a~ 162 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDG-RKGYAEQAP 162 (237)
T ss_pred cceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCc-cccCCccCC
Confidence 35899999998644333 2 33331 11 22222111111 3447788766444333 344333 88
Q ss_pred hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 133 YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 133 yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
||-|||+ -....+..|+=-.|+|||.+++-
T Consensus 163 YDaIhvG---------Aaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 163 YDAIHVG---------AAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cceEEEc---------cCccccHHHHHHhhccCCeEEEe
Confidence 9999997 22335555666678999988885
No 214
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=75.69 E-value=8.9 Score=34.38 Aligned_cols=131 Identities=12% Similarity=0.127 Sum_probs=63.0
Q ss_pred ceEEEeeCCchHHHHHHhhCC--------CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhh-----hh
Q 027471 71 VRNVMDMRAVYGGFAAALKDL--------KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDL-----LH 137 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~--------~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDl-----lH 137 (223)
--+|||.||--|++.---.++ +|-.+++.|..+-..++-+ +=-=+.++.-.=|+++. |-.|. .|
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~-dvtdp~~~~ki~e~lp~--r~VdvVlSDMap 146 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGN-DVTDPETYRKIFEALPN--RPVDVVLSDMAP 146 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCccccccc-ccCCHHHHHHHHHhCCC--CcccEEEeccCC
Confidence 457999999999986555444 4556677666553222110 00001122211123322 33333 22
Q ss_pred hhhhhc---cc--ccccchh-HHHHhhhhcccCCcEEEEe-----ccHHHHHHHHHHHHhCCCeeE-EeecCCCeeEEEE
Q 027471 138 ADHLFS---TI--KKRCSLK-AVVAEVDRILRPDGNLILR-----DDAETIVEVEDLVKSLHWDVR-MIYTNDNQGMLCV 205 (223)
Q Consensus 138 ~~~lfs---~~--~~rC~i~-~vl~E~DRILRPgG~~ii~-----D~~~~~~~i~~i~~~l~W~~~-~~~~~~~e~~L~~ 205 (223)
-..=+. |+ ++-|.-. .+-++++ +|+|.|+.- +.......++..+..++=-.- ..-.++.|.+|+|
T Consensus 147 naTGvr~~Dh~~~i~LC~s~l~~al~~~---~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~ 223 (232)
T KOG4589|consen 147 NATGVRIRDHYRSIELCDSALLFALTLL---IPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDESAETYLVC 223 (232)
T ss_pred CCcCcchhhHHHHHHHHHHHHHHhhhhc---CCCcEEEEEEecCCchHHHHHHHHHHhhhcEeeCCccccccccceeeee
Confidence 211111 11 2335211 2334444 499999875 334445566665544431110 1113568999999
Q ss_pred Ee
Q 027471 206 HK 207 (223)
Q Consensus 206 ~K 207 (223)
.+
T Consensus 224 ~~ 225 (232)
T KOG4589|consen 224 LN 225 (232)
T ss_pred ee
Confidence 87
No 215
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=73.94 E-value=2.2 Score=36.22 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=19.7
Q ss_pred eEEEeeCCchHHHHHHhhCCCe
Q 027471 72 RNVMDMRAVYGGFAAALKDLKV 93 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~~V 93 (223)
.+|||+.||+|+++-.+..++.
T Consensus 51 ~~vLDLfaGsG~lglea~srga 72 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALSRGA 72 (189)
T ss_pred CEEEEecCCCcHHHHHHHhCCC
Confidence 4799999999999999998854
No 216
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.41 E-value=2.3 Score=37.25 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=68.7
Q ss_pred CceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCC----CChhhHHhhC----ccc---ccccccccCCC-CCcchhhhh
Q 027471 70 FVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP----DTLPIIYERG----LFG---LYHDWCESFNT-YPRTYDLLH 137 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~----~~l~~i~eRG----Li~---~~~dwce~f~t-yPrtyDllH 137 (223)
+-|.||.+|+|+-|.|.-|....+.+-.|--.++. ++++-|.-+. +-. +-.+|-++-+. --.|||+|-
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 34789999999999999997664333333222321 3555555444 211 11112222222 347999999
Q ss_pred hhhhhcccccccchh-----HHHHhhhhcccCCcEEEEeccHH--HHHHHHHHHHhCCCee
Q 027471 138 ADHLFSTIKKRCSLK-----AVVAEVDRILRPDGNLILRDDAE--TIVEVEDLVKSLHWDV 191 (223)
Q Consensus 138 ~~~lfs~~~~rC~i~-----~vl~E~DRILRPgG~~ii~D~~~--~~~~i~~i~~~l~W~~ 191 (223)
|+ .|.+- .++--+-+.|||.|..++..+.. .+.+..+.....-..+
T Consensus 109 aA--------DClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~gf~v 161 (201)
T KOG3201|consen 109 AA--------DCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTVGFTV 161 (201)
T ss_pred ec--------cchhHHHHHHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhceeEE
Confidence 87 56543 67778899999999998875532 4555555555444443
No 217
>PRK11524 putative methyltransferase; Provisional
Probab=71.76 E-value=5.2 Score=35.89 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=22.6
Q ss_pred hhHHHHhhhhcccCCcEEEEeccHHHHHHH
Q 027471 151 LKAVVAEVDRILRPDGNLILRDDAETIVEV 180 (223)
Q Consensus 151 i~~vl~E~DRILRPgG~~ii~D~~~~~~~i 180 (223)
+..+|.|+-|+|||||.+++--....+..+
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~~~~~~~~~ 88 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMNSTENMPFI 88 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCchhhhHH
Confidence 458999999999999999986444433333
No 218
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=71.69 E-value=3.5 Score=38.44 Aligned_cols=34 Identities=9% Similarity=-0.023 Sum_probs=23.3
Q ss_pred CCCCceEEEeeCCchHHHHHHhhCC----CeEEEEecC
Q 027471 67 NWSFVRNVMDMRAVYGGFAAALKDL----KVWVMNVVP 100 (223)
Q Consensus 67 ~~~~iRnvLDmgaG~GgFAA~L~~~----~V~vmnv~p 100 (223)
..+.-.+|||+|||.|+.+..|..+ .++...+.|
T Consensus 111 p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~ 148 (321)
T PRK11727 111 PRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDP 148 (321)
T ss_pred CCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCH
Confidence 3445677999999999888777654 344444443
No 219
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=70.28 E-value=4.4 Score=32.66 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=27.3
Q ss_pred ccchhHHHHhhhhcccCCcEEEEeccH--------HHHHHHHHHHHhCCCe
Q 027471 148 RCSLKAVVAEVDRILRPDGNLILRDDA--------ETIVEVEDLVKSLHWD 190 (223)
Q Consensus 148 rC~i~~vl~E~DRILRPgG~~ii~D~~--------~~~~~i~~i~~~l~W~ 190 (223)
...+..++.-+-+.|||||.||+--+. ...+.+..-++++++.
T Consensus 20 D~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lr 70 (110)
T PF06859_consen 20 DEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLR 70 (110)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----
T ss_pred CHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEC
Confidence 356778999999999999999997321 1234555667777764
No 220
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=69.65 E-value=35 Score=23.82 Aligned_cols=60 Identities=13% Similarity=0.294 Sum_probs=40.2
Q ss_pred cccchh--HHHHhhhhcccCCcEE-EEeccHHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471 147 KRCSLK--AVVAEVDRILRPDGNL-ILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 207 (223)
Q Consensus 147 ~rC~i~--~vl~E~DRILRPgG~~-ii~D~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K 207 (223)
..|.++ .+..+++.+ .+|..+ |+.|+......|.+.++.+.+++.....++.+-.++.+|
T Consensus 8 ~~CP~Pll~~~~~l~~l-~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~~~~~~~i~I~K 70 (70)
T PF01206_consen 8 LSCPMPLLKAKKALKEL-PPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEEEGGEYRILIRK 70 (70)
T ss_dssp -STTHHHHHHHHHHHTS-GTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEESSSSEEEEEEE
T ss_pred CCCCHHHHHHHHHHHhc-CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEEeCCEEEEEEEC
Confidence 368776 333444443 677766 777888889999999999999976554455555555554
No 221
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=69.59 E-value=3.4 Score=38.61 Aligned_cols=109 Identities=16% Similarity=0.271 Sum_probs=57.8
Q ss_pred EEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccc--ccc-c---ccccCCC---C---------Ccc
Q 027471 73 NVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFG--LYH-D---WCESFNT---Y---------PRT 132 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~-d---wce~f~t---y---------Prt 132 (223)
.|||++||+|+|+-+|.+. .|+.+-.++.......+-+...|+-. ++. | +...+.. + ...
T Consensus 209 ~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (362)
T PRK05031 209 DLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYN 288 (362)
T ss_pred eEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCC
Confidence 4999999999999999875 56666655443322222233345421 111 1 1100100 0 013
Q ss_pred hhhhhhhhhhcccccccch-hHHHHhhhhcccCCcEEEEeccHHHH-HHHHHHHHhCCCeeE
Q 027471 133 YDLLHADHLFSTIKKRCSL-KAVVAEVDRILRPDGNLILRDDAETI-VEVEDLVKSLHWDVR 192 (223)
Q Consensus 133 yDllH~~~lfs~~~~rC~i-~~vl~E~DRILRPgG~~ii~D~~~~~-~~i~~i~~~l~W~~~ 192 (223)
||+|=.+ .+|-.+ +.++ ..|++|++.++++-+...+ ..++.+.+ .+++.
T Consensus 289 ~D~v~lD------PPR~G~~~~~l---~~l~~~~~ivyvSC~p~tlarDl~~L~~--gY~l~ 339 (362)
T PRK05031 289 FSTIFVD------PPRAGLDDETL---KLVQAYERILYISCNPETLCENLETLSQ--THKVE 339 (362)
T ss_pred CCEEEEC------CCCCCCcHHHH---HHHHccCCEEEEEeCHHHHHHHHHHHcC--CcEEE
Confidence 5665544 223222 2333 4455689999999666654 44776654 56654
No 222
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=68.71 E-value=4.4 Score=39.26 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=63.2
Q ss_pred CCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCccccccc--ccccCCC-CC--cchhhhhhhh
Q 027471 68 WSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLFGLYHD--WCESFNT-YP--RTYDLLHADH 140 (223)
Q Consensus 68 ~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi~~~~d--wce~f~t-yP--rtyDllH~~~ 140 (223)
...--+|+|+=||+|+|+-+|+++ .|..+-++|.......+-+..-|+-.+... -.|.|.. .. ..+|.|=.+
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD- 369 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD- 369 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEEC-
Confidence 344568999999999999999977 677777766544433333333444321110 0011111 11 244554444
Q ss_pred hhcccccccchh-HHHHhhhhcccCCcEEEEeccHHHHHH
Q 027471 141 LFSTIKKRCSLK-AVVAEVDRILRPDGNLILRDDAETIVE 179 (223)
Q Consensus 141 lfs~~~~rC~i~-~vl~E~DRILRPgG~~ii~D~~~~~~~ 179 (223)
.+|+.+. .++.++.+ +.|...+++|=++.++.+
T Consensus 370 -----PPR~G~~~~~lk~l~~-~~p~~IvYVSCNP~TlaR 403 (432)
T COG2265 370 -----PPRAGADREVLKQLAK-LKPKRIVYVSCNPATLAR 403 (432)
T ss_pred -----CCCCCCCHHHHHHHHh-cCCCcEEEEeCCHHHHHH
Confidence 4577777 77777776 467789999977776543
No 223
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=66.34 E-value=6 Score=36.62 Aligned_cols=54 Identities=26% Similarity=0.508 Sum_probs=41.6
Q ss_pred CCcchhhhhhhhhhcccccccchhHHHH-hhhhcccCCcEEEEecc-----------HHHHHHHHHHHHhCCCee
Q 027471 129 YPRTYDLLHADHLFSTIKKRCSLKAVVA-EVDRILRPDGNLILRDD-----------AETIVEVEDLVKSLHWDV 191 (223)
Q Consensus 129 yPrtyDllH~~~lfs~~~~rC~i~~vl~-E~DRILRPgG~~ii~D~-----------~~~~~~i~~i~~~l~W~~ 191 (223)
|-+-||+|..+ |++...|- |+.++++|||.+|+-.. .....+|+++++.-.|+-
T Consensus 219 y~~~Fd~ifvs---------~s~vh~L~p~l~~~~a~~A~LvvEtaKfmvdLrKEq~~~F~~kv~eLA~~aG~~p 284 (289)
T PF14740_consen 219 YQNFFDLIFVS---------CSMVHFLKPELFQALAPDAVLVVETAKFMVDLRKEQLQEFVKKVKELAKAAGFKP 284 (289)
T ss_pred hcCCCCEEEEh---------hhhHhhcchHHHHHhCCCCEEEEEcchhheeCCHHHHHHHHHHHHHHHHHCCCcc
Confidence 77778888876 66666666 89999999999999621 224578999998888874
No 224
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=66.30 E-value=11 Score=32.86 Aligned_cols=88 Identities=14% Similarity=0.176 Sum_probs=49.6
Q ss_pred eEEEeeCCc-hHHHHHHhhCC-CeEEEEecCCCCCCChhhHHhhCcccccccccccCC----CCC-cchhhhhhhhhhcc
Q 027471 72 RNVMDMRAV-YGGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFN----TYP-RTYDLLHADHLFST 144 (223)
Q Consensus 72 RnvLDmgaG-~GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~----tyP-rtyDllH~~~lfs~ 144 (223)
.+||..|+| .|.+++.+++. ++.|..+... +..++.+.+.|+-.++.+-...+. ..+ +.+|++=
T Consensus 167 ~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vi------- 237 (338)
T cd08254 167 ETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIK--EEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIF------- 237 (338)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCEEEEEcCC--HHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEE-------
Confidence 466777876 57787777664 6666555332 335566666675333332100100 011 3445421
Q ss_pred cccccc-hhHHHHhhhhcccCCcEEEEe
Q 027471 145 IKKRCS-LKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 145 ~~~rC~-i~~vl~E~DRILRPgG~~ii~ 171 (223)
+ |. ....+.++-|.|+|+|.++.-
T Consensus 238 --d-~~g~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 238 --D-FVGTQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred --E-CCCCHHHHHHHHHHhhcCCEEEEE
Confidence 1 11 246788899999999999875
No 225
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=66.19 E-value=3.2 Score=37.90 Aligned_cols=95 Identities=22% Similarity=0.407 Sum_probs=51.1
Q ss_pred CCceEEEeeCCchHHHHHHhhCCCe---EEEEecCCCCCCChhhHHhhCc------ccccccccccCCCCC-cchhhhhh
Q 027471 69 SFVRNVMDMRAVYGGFAAALKDLKV---WVMNVVPIESPDTLPIIYERGL------FGLYHDWCESFNTYP-RTYDLLHA 138 (223)
Q Consensus 69 ~~iRnvLDmgaG~GgFAA~L~~~~V---~vmnv~p~~~~~~l~~i~eRGL------i~~~~dwce~f~tyP-rtyDllH~ 138 (223)
.+-++||.+|=|.|-.+.++.+++. |++-- .|+-++...+-|- |.+-.-|-..+++-| ..||-|--
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~----hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y 175 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEA----HPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY 175 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEec----CHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe
Confidence 5678899999999998888877743 33211 1123333333332 333344555555554 55554332
Q ss_pred hhhhc-ccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 139 DHLFS-TIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 139 ~~lfs-~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
+ -|+ ++.+ +-..---+=|+|+|||.|=+-
T Consensus 176 D-Ty~e~yEd---l~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 176 D-TYSELYED---LRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred e-chhhHHHH---HHHHHHHHhhhcCCCceEEEe
Confidence 2 111 1111 112222455999999988664
No 226
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=65.11 E-value=18 Score=35.74 Aligned_cols=108 Identities=19% Similarity=0.222 Sum_probs=63.4
Q ss_pred ccCCCCCCceEEEeeCCchHH----HHHHhhCCCeEEEEecCCCCCCChh-hHHhhCc---ccccccccccCCC--CCcc
Q 027471 63 GMGINWSFVRNVMDMRAVYGG----FAAALKDLKVWVMNVVPIESPDTLP-IIYERGL---FGLYHDWCESFNT--YPRT 132 (223)
Q Consensus 63 ~l~i~~~~iRnvLDmgaG~Gg----FAA~L~~~~V~vmnv~p~~~~~~l~-~i~eRGL---i~~~~dwce~f~t--yPrt 132 (223)
++.+++..--.||||=|--|| .||-|.+.|+.+-|=+..+--.-+. -+..-|. |.+-+|= ..|+. ||.+
T Consensus 234 v~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~-~ef~~~~~~~~ 312 (460)
T KOG1122|consen 234 VMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG-REFPEKEFPGS 312 (460)
T ss_pred eeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCc-ccccccccCcc
Confidence 334677777889999998887 5666677798876643333211122 2222343 4444542 23432 6678
Q ss_pred hhh----hhhhh--hhcccccccchh-------------HHHHhhhhcccCCcEEEEe
Q 027471 133 YDL----LHADH--LFSTIKKRCSLK-------------AVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 133 yDl----lH~~~--lfs~~~~rC~i~-------------~vl~E~DRILRPgG~~ii~ 171 (223)
||= .=|++ +.+.-+.-|... .+|+-.=-.+||||+++.+
T Consensus 313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEE
Confidence 886 34666 555332222211 5555566689999999998
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=64.58 E-value=8.3 Score=30.84 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=20.1
Q ss_pred CCCceEEEeeCCchHHHHHHhhC
Q 027471 68 WSFVRNVMDMRAVYGGFAAALKD 90 (223)
Q Consensus 68 ~~~iRnvLDmgaG~GgFAA~L~~ 90 (223)
......|.|+|||-|-.+.+|..
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHH
Confidence 35688999999999998888877
No 228
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=63.29 E-value=8 Score=36.02 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=21.7
Q ss_pred EEEeeCCchHHHHHHhhCC--CeEEEEecCC
Q 027471 73 NVMDMRAVYGGFAAALKDL--KVWVMNVVPI 101 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~--~V~vmnv~p~ 101 (223)
.+||+=||.|.|+-.|++. .|..+-+++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~ 229 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEE 229 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCSSEEEEEES-HH
T ss_pred cEEEEeecCCHHHHHHHhhCCeEEEeeCCHH
Confidence 5999999999999999997 5555555433
No 229
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=61.53 E-value=2.9 Score=37.93 Aligned_cols=42 Identities=21% Similarity=0.469 Sum_probs=28.1
Q ss_pred Ccchhhhhhhhhhc-ccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 130 PRTYDLLHADHLFS-TIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 130 PrtyDllH~~~lfs-~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
|+.||.+-+...+. ...++-.....+--+-+.|||||+||+-
T Consensus 156 p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 156 PPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp -SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 45688765543332 2233434448889999999999999997
No 230
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=59.61 E-value=10 Score=34.45 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=58.9
Q ss_pred hhhccCCCCCCceEEEeeCCchH--HHHHHhhCC-CeEEEEecCCCCCCChhhHHhhC----------cccccccccccC
Q 027471 60 YLNGMGINWSFVRNVMDMRAVYG--GFAAALKDL-KVWVMNVVPIESPDTLPIIYERG----------LFGLYHDWCESF 126 (223)
Q Consensus 60 Y~~~l~i~~~~iRnvLDmgaG~G--gFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eRG----------Li~~~~dwce~f 126 (223)
|.+.++.+. ..+|||.+|+|+| |.+|++... .|+.=+.... ...++.+.+.+ ++-..-+|-++.
T Consensus 77 ~~~~~g~~~-~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~--~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~ 153 (248)
T KOG2793|consen 77 TATLIGFKT-KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKV--VENLKFNRDKNNIALNQLGGSVIVAILVWGNAL 153 (248)
T ss_pred hhccccccc-cceeEEEecCCccHHHHHHHHHhcceeccCCchhh--HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcc
Confidence 344555433 6889999988876 555666433 4544222111 11233332222 233555787776
Q ss_pred CC--CCcc-hhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 127 NT--YPRT-YDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 127 ~t--yPrt-yDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
.. ++.. +|++=++.+|-....-|.+...|. =.|--+|.+++.
T Consensus 154 ~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla---~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 154 DVSFRLPNPFDLILASDVVYEEESFEGLVKTLA---FLLAKDGTIFLA 198 (248)
T ss_pred cHhhccCCcccEEEEeeeeecCCcchhHHHHHH---HHHhcCCeEEEE
Confidence 65 6655 999999877776666665554443 345556644443
No 231
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=57.71 E-value=7.5 Score=36.92 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=52.6
Q ss_pred EEEeeCCchHHHHHHhhCC--C---eEEEEecCCCCCCChhhHHhh-Cc--ccccc-cccccCCCCCcchhhhhhhhhhc
Q 027471 73 NVMDMRAVYGGFAAALKDL--K---VWVMNVVPIESPDTLPIIYER-GL--FGLYH-DWCESFNTYPRTYDLLHADHLFS 143 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~--~---V~vmnv~p~~~~~~l~~i~eR-GL--i~~~~-dwce~f~tyPrtyDllH~~~lfs 143 (223)
+|||+-||+|.+|-..+.+ + |+...+.|.-.. .++.+.+. ++ +-+++ |-...+..-...||+|..+- |.
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~-~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-fG 124 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE-SIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-FG 124 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-CC
Confidence 6999999999999999876 3 455445443222 22222221 22 11222 21111111124689888874 42
Q ss_pred ccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
+. ..++-..=+.+++||++.++
T Consensus 125 -----s~-~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 125 -----TP-APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -----Cc-HHHHHHHHHhcccCCEEEEE
Confidence 11 25666777888999999998
No 232
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=56.16 E-value=21 Score=31.08 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=15.2
Q ss_pred hhccCCCCCCceEEEeeCCchHH--HHHHh
Q 027471 61 LNGMGINWSFVRNVMDMRAVYGG--FAAAL 88 (223)
Q Consensus 61 ~~~l~i~~~~iRnvLDmgaG~Gg--FAA~L 88 (223)
++.++++.+ ...+|+|||.|. ++|+|
T Consensus 35 l~~~~l~~~--dvF~DlGSG~G~~v~~aal 62 (205)
T PF08123_consen 35 LDELNLTPD--DVFYDLGSGVGNVVFQAAL 62 (205)
T ss_dssp HHHTT--TT---EEEEES-TTSHHHHHHHH
T ss_pred HHHhCCCCC--CEEEECCCCCCHHHHHHHH
Confidence 344555544 589999999998 34444
No 233
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=56.06 E-value=1.7 Score=39.30 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=26.8
Q ss_pred HHHHhhhhcc----cCCcEEEEe----ccHHHHHHHHHHHHhC
Q 027471 153 AVVAEVDRIL----RPDGNLILR----DDAETIVEVEDLVKSL 187 (223)
Q Consensus 153 ~vl~E~DRIL----RPgG~~ii~----D~~~~~~~i~~i~~~l 187 (223)
.+|...-+.| ||||.++.+ .+.+.-..|+.++++-
T Consensus 196 ~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 196 EILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp HHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred HHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 7889999999 999999998 3444455666666654
No 234
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=55.17 E-value=8 Score=35.27 Aligned_cols=47 Identities=15% Similarity=0.347 Sum_probs=35.2
Q ss_pred CCcchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEeccHHH
Q 027471 129 YPRTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDDAET 176 (223)
Q Consensus 129 yPrtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~~~~ 176 (223)
+++-||+|-|-+|+-.... -.-..++..+...|+|||++++-....+
T Consensus 199 ~~~~fD~IfCRNVLIYFd~-~~q~~il~~f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDE-ETQERILRRFADSLKPGGLLFLGHSETI 245 (268)
T ss_pred ccCCCCEEEEcceEEeeCH-HHHHHHHHHHHHHhCCCCEEEEccCccc
Confidence 5577999999887764432 1224899999999999999999755443
No 235
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=54.95 E-value=20 Score=33.55 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=18.0
Q ss_pred HHHHhhhhcccCCcEEEEe
Q 027471 153 AVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 153 ~vl~E~DRILRPgG~~ii~ 171 (223)
.+|...-++|||||.++.+
T Consensus 269 ~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 269 EILAAALKLLKPGGVLVYS 287 (355)
T ss_pred HHHHHHHHhcCCCCEEEEE
Confidence 7899999999999999998
No 236
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=53.90 E-value=7.5 Score=34.37 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=32.2
Q ss_pred hhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEe
Q 027471 45 FTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNV 98 (223)
Q Consensus 45 f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv 98 (223)
|-.|.+.=.+.+.. +++. .-.+|+|+|+|.|.+..+|.++ .|+++-.
T Consensus 12 FL~~~~~~~~Iv~~-----~~~~--~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~ 60 (262)
T PF00398_consen 12 FLVDPNIADKIVDA-----LDLS--EGDTVLEIGPGPGALTRELLKRGKRVIAVEI 60 (262)
T ss_dssp EEEHHHHHHHHHHH-----HTCG--TTSEEEEESSTTSCCHHHHHHHSSEEEEEES
T ss_pred eeCCHHHHHHHHHh-----cCCC--CCCEEEEeCCCCccchhhHhcccCcceeecC
Confidence 55554444444432 3332 5678999999999999999877 4666654
No 237
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=51.07 E-value=7.1 Score=37.97 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=18.2
Q ss_pred CceEEEeeCCchHHHHHHhhCC
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL 91 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~ 91 (223)
...+|+|-+||.|+|.+++.++
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~ 52 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKK 52 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHH
Confidence 3457999999999999888654
No 238
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=48.73 E-value=42 Score=30.37 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=54.7
Q ss_pred CCCCCCceEEEeeCCchHHHHHHhhC----CCeEEEEecCCCCCC--Ch------hhHHhhCccc--ccccccccCCCCC
Q 027471 65 GINWSFVRNVMDMRAVYGGFAAALKD----LKVWVMNVVPIESPD--TL------PIIYERGLFG--LYHDWCESFNTYP 130 (223)
Q Consensus 65 ~i~~~~iRnvLDmgaG~GgFAA~L~~----~~V~vmnv~p~~~~~--~l------~~i~eRGLi~--~~~dwce~f~tyP 130 (223)
+++.+ -+|.|+-.|-|-|-+-+.+ ++ .|-|++|.+... .. -...|-++-. .+..---+|. -|
T Consensus 45 Glkpg--~tVid~~PGgGy~TrI~s~~vgp~G-~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~-~p 120 (238)
T COG4798 45 GLKPG--ATVIDLIPGGGYFTRIFSPAVGPKG-KVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG-AP 120 (238)
T ss_pred ccCCC--CEEEEEecCCccHhhhhchhcCCce-eEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC-CC
Confidence 56666 4577777776666665544 46 677888887721 11 1222222211 1110000111 22
Q ss_pred cchhhhhhhhhhcc----cccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 131 RTYDLLHADHLFST----IKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 131 rtyDllH~~~lfs~----~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
.-.|++......+. ..+.-...++-.++-+.|+|||.+.+-|.
T Consensus 121 q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 44444332111111 11123345999999999999999988744
No 239
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=48.18 E-value=11 Score=35.95 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=29.8
Q ss_pred cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEec
Q 027471 131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D 172 (223)
++||.+--+..++-.. ...+...+.++.|.+||||.+++|.
T Consensus 294 ~s~~~~vL~D~~Dwm~-~~~~~~~~~~l~~~~~pgaRV~~Rs 334 (380)
T PF11899_consen 294 GSFDRFVLSDHMDWMD-PEQLNEEWQELARTARPGARVLWRS 334 (380)
T ss_pred CCeeEEEecchhhhCC-HHHHHHHHHHHHHHhCCCCEEEEee
Confidence 6666655444444333 3566789999999999999999993
No 240
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=47.00 E-value=19 Score=33.56 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.8
Q ss_pred hhHHHHhhhh-cccCCcEEEEe
Q 027471 151 LKAVVAEVDR-ILRPDGNLILR 171 (223)
Q Consensus 151 i~~vl~E~DR-ILRPgG~~ii~ 171 (223)
...+|-++.| .|+|||.++|-
T Consensus 175 a~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 175 AAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HHHHHHHHHHhhCCCCCEEEEe
Confidence 3488999999 99999999996
No 241
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=45.38 E-value=63 Score=28.09 Aligned_cols=42 Identities=31% Similarity=0.567 Sum_probs=37.1
Q ss_pred hhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeE
Q 027471 151 LKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 151 i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~ 192 (223)
+...+.|+-|+|+|+|.+++...-+....+..+++.+.|...
T Consensus 78 ~~~~~~~~~rvl~~~~~~~v~~~~~~~~~~~~~~~~~gf~~~ 119 (302)
T COG0863 78 LLQWLAEQKRVLKPGGSLYVIDPFSNLARIEDIAKKLGFEIL 119 (302)
T ss_pred HHHHHHHhhheecCCCEEEEECCchhhhHHHHHHHhCCCeEe
Confidence 468899999999999999999988888888888888888864
No 242
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=44.07 E-value=14 Score=31.40 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=22.4
Q ss_pred eEEEeeCCchHHHHHHhhCC--CeEEEEecCC
Q 027471 72 RNVMDMRAVYGGFAAALKDL--KVWVMNVVPI 101 (223)
Q Consensus 72 RnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~ 101 (223)
++|+|+-||.||-+-+++.. .|..+.+.|.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~ 32 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPE 32 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HH
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHH
Confidence 47999999999999988887 4777665443
No 243
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=43.93 E-value=1e+02 Score=21.08 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=36.1
Q ss_pred ccchh--HHHHhhhhcccCCcEE-EEeccHHHHHHHHHHHHhCCCeeEEeecCCC
Q 027471 148 RCSLK--AVVAEVDRILRPDGNL-ILRDDAETIVEVEDLVKSLHWDVRMIYTNDN 199 (223)
Q Consensus 148 rC~i~--~vl~E~DRILRPgG~~-ii~D~~~~~~~i~~i~~~l~W~~~~~~~~~~ 199 (223)
.|.++ .+...+++ |.+|..+ ++.|.......|.+.++...+++.....+++
T Consensus 8 ~CP~Pl~~~~~~l~~-l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~~~~~ 61 (69)
T cd00291 8 PCPLPVLKTKKALEK-LKSGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVEEEGG 61 (69)
T ss_pred cCCHHHHHHHHHHhc-CCCCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEEEeCC
Confidence 68766 55566666 5677764 5668777888999999999999765444333
No 244
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=42.17 E-value=85 Score=32.58 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=75.2
Q ss_pred CceEEEeeCCchHHHHHHhhCCCe---EEEE-ecCCCC------CCChhhHHhhCcccccccccccCCC-----------
Q 027471 70 FVRNVMDMRAVYGGFAAALKDLKV---WVMN-VVPIES------PDTLPIIYERGLFGLYHDWCESFNT----------- 128 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~~V---~vmn-v~p~~~------~~~l~~i~eRGLi~~~~dwce~f~t----------- 128 (223)
..|-.|-.|=|.||-.|+|...+- .+.| +...+. +..-+-+.+++-- ...-|=.|.+
T Consensus 322 ~~~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~--~~~Rcvn~~~~W~~pSDLs~~ 399 (675)
T PF14314_consen 322 KYRDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGN--DKSRCVNLDTCWEHPSDLSDP 399 (675)
T ss_pred CcceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCc--ccceeecchhhhcCccccCCc
Confidence 357889999999999999876522 2333 222222 1111222222211 1222223332
Q ss_pred ------------CCcchhhhhhhh-hhcccccccchh-HHHHhhhhcccCCcEEEEec--------cHHHHHHHHHHHHh
Q 027471 129 ------------YPRTYDLLHADH-LFSTIKKRCSLK-AVVAEVDRILRPDGNLILRD--------DAETIVEVEDLVKS 186 (223)
Q Consensus 129 ------------yPrtyDllH~~~-lfs~~~~rC~i~-~vl~E~DRILRPgG~~ii~D--------~~~~~~~i~~i~~~ 186 (223)
+..++||+-|+- +.+... .-.|+ .+..-+.++|.++|.+|+-. +...+..+.++.+.
T Consensus 400 ~TW~YF~~l~~~~~~~idLiv~DmEV~d~~~-~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~~F~~ 478 (675)
T PF14314_consen 400 ETWKYFVSLKKQHNLSIDLIVMDMEVRDDSI-IRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGRYFKS 478 (675)
T ss_pred cHHHHHHHHHhhcCCcccEEEEeceecChHH-HHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHhhcCc
Confidence 334566655541 111000 11122 34445679999999999962 22355667777777
Q ss_pred CCCeeEE-eecCCCeeEEEEEecccCC
Q 027471 187 LHWDVRM-IYTNDNQGMLCVHKTYWRP 212 (223)
Q Consensus 187 l~W~~~~-~~~~~~e~~L~~~K~~w~~ 212 (223)
+.+-..- ..+...|.+++++|..=.+
T Consensus 479 V~l~qT~~SSs~TSEVYlv~~~~~~~~ 505 (675)
T PF14314_consen 479 VELVQTQFSSSFTSEVYLVFQKLKKFP 505 (675)
T ss_pred eEEEECCCCCCCceEEEEEEecccCCC
Confidence 6665432 2245689999999865444
No 245
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=42.07 E-value=49 Score=30.92 Aligned_cols=99 Identities=17% Similarity=0.338 Sum_probs=66.1
Q ss_pred CCCCCceEEEeeCCchHHHHHHhhCC----C-eEEEEecCCCCCCChhhHHhh-CcccccccccccCCCCCcchhhhh-h
Q 027471 66 INWSFVRNVMDMRAVYGGFAAALKDL----K-VWVMNVVPIESPDTLPIIYER-GLFGLYHDWCESFNTYPRTYDLLH-A 138 (223)
Q Consensus 66 i~~~~iRnvLDmgaG~GgFAA~L~~~----~-V~vmnv~p~~~~~~l~~i~eR-GLi~~~~dwce~f~tyPrtyDllH-~ 138 (223)
|+.| ..||=+||+.|.-.....|- + |.++-+++....+.+.++-.| .+|+++-| .++|.-|-|+- |
T Consensus 154 ikpG--sKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiED-----ArhP~KYRmlVgm 226 (317)
T KOG1596|consen 154 IKPG--SKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIED-----ARHPAKYRMLVGM 226 (317)
T ss_pred ecCC--ceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeecc-----CCCchheeeeeee
Confidence 4444 46999999999887777664 2 566777777776666655555 35667776 34664444421 1
Q ss_pred -hhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 139 -DHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 139 -~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
+-+|+...+--....+++-..=-||+||.|+++
T Consensus 227 VDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 227 VDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 334554443333447888899999999999998
No 246
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=42.01 E-value=15 Score=32.66 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=17.0
Q ss_pred CCCCceEEEeeCCchHHHHHHhhC
Q 027471 67 NWSFVRNVMDMRAVYGGFAAALKD 90 (223)
Q Consensus 67 ~~~~iRnvLDmgaG~GgFAA~L~~ 90 (223)
....-..|+|-.||.|+|-.+..+
T Consensus 43 ~~~~~~~VlDPacGsG~fL~~~~~ 66 (311)
T PF02384_consen 43 NPKKGDSVLDPACGSGGFLVAAME 66 (311)
T ss_dssp TT-TTEEEEETT-TTSHHHHHHHH
T ss_pred hccccceeechhhhHHHHHHHHHH
Confidence 344566799999999999766654
No 247
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=40.26 E-value=16 Score=33.02 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=21.8
Q ss_pred HhhhhcccCCcE-EEEe-------ccHHHHHHHHHHHHhCCC
Q 027471 156 AEVDRILRPDGN-LILR-------DDAETIVEVEDLVKSLHW 189 (223)
Q Consensus 156 ~E~DRILRPgG~-~ii~-------D~~~~~~~i~~i~~~l~W 189 (223)
-++||+||||.. |=+- |+.-.++.|++.++.+--
T Consensus 38 ~qIeRllrpgstyfnLNpfeVLqIdpev~~edikkryRklSi 79 (250)
T KOG1150|consen 38 QQIERLLRPGSTYFNLNPFEVLQIDPEVTDEDIKKRYRKLSI 79 (250)
T ss_pred HHHHHHhcCCccccccChHHHHhcCCCCCHHHHHHHHHhhhe
Confidence 479999999953 3332 333346778877777643
No 248
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=39.26 E-value=4.3 Score=34.52 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=49.4
Q ss_pred ceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCC--CChhhHHh-hCccccccccc-ccCCCC------Ccchhhhhhhh
Q 027471 71 VRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESP--DTLPIIYE-RGLFGLYHDWC-ESFNTY------PRTYDLLHADH 140 (223)
Q Consensus 71 iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~--~~l~~i~e-RGLi~~~~dwc-e~f~ty------PrtyDllH~~~ 140 (223)
--.|||+=||+|+.|-.-++|+.--.-++..+.. ..++-+.+ =|+..-+.-+| ..+..+ ...||+|-++-
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 4579999999999998888886432222222221 13333333 23332122122 222222 36788887763
Q ss_pred hhcccccccchhHHHHhhh--hcccCCcEEEEec
Q 027471 141 LFSTIKKRCSLKAVVAEVD--RILRPDGNLILRD 172 (223)
Q Consensus 141 lfs~~~~rC~i~~vl~E~D--RILRPgG~~ii~D 172 (223)
=|..... ++.++.-+. .+|.++|.+|+--
T Consensus 123 PY~~~~~---~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 123 PYAKGLY---YEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp STTSCHH---HHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CcccchH---HHHHHHHHHHCCCCCCCEEEEEEe
Confidence 3332211 234444444 7899999998864
No 249
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=39.23 E-value=26 Score=33.41 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=66.0
Q ss_pred EEEeeCCchHHHHHHhhCCCeEEEEecCCCCCC-ChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccccccch
Q 027471 73 NVMDMRAVYGGFAAALKDLKVWVMNVVPIESPD-TLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSL 151 (223)
Q Consensus 73 nvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~-~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i 151 (223)
.|+=+|=.||..+.+|...+++.++=+ .-++. +.+-...-|+.+-...+..+.+..|..+|+|=.- .-+..-.+
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~~~~ds-~~~~~~~~~n~~~n~~~~~~~~~~~~~~~~~~~~d~vl~~----~PK~~~~l 121 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPYSIGDS-YISELATRENLRLNGIDESSVKFLDSTADYPQQPGVVLIK----VPKTLALL 121 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCCeeehH-HHHHHHHHHHHHHcCCCcccceeecccccccCCCCEEEEE----eCCCHHHH
Confidence 689999999999999998777644111 01122 2232333455543222334666688888874321 11234456
Q ss_pred hHHHHhhhhcccCCcEEEEeccHH-----HHHHHHHHH
Q 027471 152 KAVVAEVDRILRPDGNLILRDDAE-----TIVEVEDLV 184 (223)
Q Consensus 152 ~~vl~E~DRILRPgG~~ii~D~~~-----~~~~i~~i~ 184 (223)
+..|.-+-+.|.||+.+|.-.... .+..+++++
T Consensus 122 ~~~l~~l~~~l~~~~~ii~g~~~k~i~~~~~~~~~k~l 159 (378)
T PRK15001 122 EQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVL 159 (378)
T ss_pred HHHHHHHHhhCCCCCEEEEEEecCCCcHHHHHHHHHHh
Confidence 688888999999999998875543 235555554
No 250
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=39.14 E-value=23 Score=34.69 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=23.1
Q ss_pred cchhhhhhhhhhcccccccchhHHHHhhhhcccCCcEEEEecc
Q 027471 131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILRDD 173 (223)
Q Consensus 131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~D~ 173 (223)
..|+|+-..+-+-.-.+.-.|...+.-.=-+|+|||.++|-+.
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 5677755443222222222233333334457899999999643
No 251
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=39.03 E-value=26 Score=32.06 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=23.7
Q ss_pred HHHHhhhhcccCCcEEEEeccH---HHHHHHHHH-HHhC
Q 027471 153 AVVAEVDRILRPDGNLILRDDA---ETIVEVEDL-VKSL 187 (223)
Q Consensus 153 ~vl~E~DRILRPgG~~ii~D~~---~~~~~i~~i-~~~l 187 (223)
..|.+-+||| ||||+.++|-. +.+..+.++ +..+
T Consensus 87 ~~l~~~~ril-pgg~~~~s~ll~~P~~l~~ig~~la~~~ 124 (268)
T TIGR01743 87 QSLSEPERIL-PGGYLYLTDILGKPSILSKIGKILASVF 124 (268)
T ss_pred HHHHHCCCcc-cCCeEEechhhcCHHHHHHHHHHHHHHh
Confidence 7788899998 99999998553 345554443 4444
No 252
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=38.61 E-value=47 Score=30.31 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=33.4
Q ss_pred chhHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEe
Q 027471 44 DFTADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNV 98 (223)
Q Consensus 44 ~f~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv 98 (223)
.|-.|...=++.|.. .++.. -.+|+.+|+|.|++-..|.++ .|+++=+
T Consensus 11 nFL~d~~v~~kIv~~-----a~~~~--~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEi 60 (259)
T COG0030 11 NFLIDKNVIDKIVEA-----ANISP--GDNVLEIGPGLGALTEPLLERAARVTAIEI 60 (259)
T ss_pred ccccCHHHHHHHHHh-----cCCCC--CCeEEEECCCCCHHHHHHHhhcCeEEEEEe
Confidence 466666664444443 33333 678999999999999999998 4555544
No 253
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=37.67 E-value=64 Score=26.88 Aligned_cols=55 Identities=20% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHhhhhcccCCcEEEEe------ccHHHHHHHHHHHHhCCC---eeEEee---c-CCCeeEEEEEe
Q 027471 153 AVVAEVDRILRPDGNLILR------DDAETIVEVEDLVKSLHW---DVRMIY---T-NDNQGMLCVHK 207 (223)
Q Consensus 153 ~vl~E~DRILRPgG~~ii~------D~~~~~~~i~~i~~~l~W---~~~~~~---~-~~~e~~L~~~K 207 (223)
.-|-..=++|+|||.+++. .-.+..+.+.+.+++|.. .+.... . +....+++.+|
T Consensus 73 ~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~pp~l~~ieK 140 (140)
T PF06962_consen 73 KALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNNPPLLVIIEK 140 (140)
T ss_dssp HHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS---EEEEEEE
T ss_pred HHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCCCCEEEEEEC
Confidence 4555666889999999987 234566778888777654 443322 1 23455555554
No 254
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=36.92 E-value=38 Score=29.87 Aligned_cols=53 Identities=19% Similarity=0.212 Sum_probs=37.9
Q ss_pred ccchhHhhhhHHHHHhh-----------hhh-hccC--CCCCCceEEEeeCCchHHHHHHhhCCCeE
Q 027471 42 PEDFTADYQHWKNVVSK-----------SYL-NGMG--INWSFVRNVMDMRAVYGGFAAALKDLKVW 94 (223)
Q Consensus 42 ~~~f~~D~~~W~~~v~~-----------~Y~-~~l~--i~~~~iRnvLDmgaG~GgFAA~L~~~~V~ 94 (223)
...|.+...+.+.-+.+ +|. +.|. |++.+--.||..|.|+|-|-.++.+++|-
T Consensus 6 ~~~f~~e~~F~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~ 72 (194)
T COG3963 6 ARKFDEEISFFKGWIDNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVR 72 (194)
T ss_pred hhhHHHHHHHHHHHhcCCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCC
Confidence 34577777777664443 222 2221 67777789999999999999999999764
No 255
>PHA01634 hypothetical protein
Probab=35.36 E-value=34 Score=29.04 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=32.7
Q ss_pred hHhhhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCCe
Q 027471 46 TADYQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKV 93 (223)
Q Consensus 46 ~~D~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~V 93 (223)
+.+-.+|+.-..+ |-. +.+ .-++|+|+||+.|.-|-+..-++.
T Consensus 9 ~~~c~ywrey~~~-Y~~-idv---k~KtV~dIGA~iGdSaiYF~l~GA 51 (156)
T PHA01634 9 KLECDYWREYPHA-YGM-LNV---YQRTIQIVGADCGSSALYFLLRGA 51 (156)
T ss_pred HccchHHHHHHHH-hhh-eee---cCCEEEEecCCccchhhHHhhcCc
Confidence 4567899988876 654 322 357899999999999988877653
No 256
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=34.99 E-value=32 Score=31.57 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=47.6
Q ss_pred HHHHhhCCCeEEEEecCCCC-----------CCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccccccchh
Q 027471 84 FAAALKDLKVWVMNVVPIES-----------PDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSLK 152 (223)
Q Consensus 84 FAA~L~~~~V~vmnv~p~~~-----------~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i~ 152 (223)
.+.+|.+.+|-++.+.|... -+.+.-.+++|++++.|- ..-+.-.+.|-++-. +
T Consensus 86 V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~G--DVv~d~~~g~~IiSG-------------D 150 (252)
T COG1608 86 VVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYG--DVVPDDDNGYEIISG-------------D 150 (252)
T ss_pred HHHHHHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEeeeec--ceEEcCCCceEEEec-------------c
Confidence 56777888888888777765 123455688999997772 010000022222222 2
Q ss_pred HHHHhhhhcccCCcEEEEec
Q 027471 153 AVVAEVDRILRPDGNLILRD 172 (223)
Q Consensus 153 ~vl~E~DRILRPgG~~ii~D 172 (223)
+++.++.+.|+|.-....+|
T Consensus 151 dIv~~LA~~l~pd~v~f~td 170 (252)
T COG1608 151 DIVLHLAKELKPDRVIFLTD 170 (252)
T ss_pred HHHHHHHHHhCCCEEEEEec
Confidence 89999999999998888873
No 257
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=34.24 E-value=14 Score=30.70 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=11.1
Q ss_pred CCcchhhhhhhhh
Q 027471 129 YPRTYDLLHADHL 141 (223)
Q Consensus 129 yPrtyDllH~~~l 141 (223)
+|.|||++|.+|+
T Consensus 7 ~~G~FD~~H~GHi 19 (152)
T cd02173 7 VDGAFDLFHIGHI 19 (152)
T ss_pred EcCcccCCCHHHH
Confidence 6799999999944
No 258
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=33.34 E-value=2e+02 Score=21.20 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=41.1
Q ss_pred ccchhHHH--HhhhhcccCCcEE-EEeccHHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEec
Q 027471 148 RCSLKAVV--AEVDRILRPDGNL-ILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHKT 208 (223)
Q Consensus 148 rC~i~~vl--~E~DRILRPgG~~-ii~D~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K~ 208 (223)
.|.++.++ .+++. |.+|+.+ ++.|+......|...++....++.....++.+-.++.+|.
T Consensus 18 ~CP~Pll~~kk~l~~-l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~~~~~~~g~~~~~I~k~ 80 (81)
T PRK00299 18 RCPEPVMMVRKTVRN-MQPGETLLIIADDPATTRDIPSFCRFMDHELLAQETEQLPYRYLIRKG 80 (81)
T ss_pred CCCHHHHHHHHHHHc-CCCCCEEEEEeCCccHHHHHHHHHHHcCCEEEEEEecCCEEEEEEEEC
Confidence 69887433 23333 4788865 5568788888999999999999865544455555555664
No 259
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=32.59 E-value=39 Score=33.04 Aligned_cols=114 Identities=21% Similarity=0.296 Sum_probs=56.7
Q ss_pred CceEEEeeCCchHH---HHHHhhCCCeEEEEecCCCCCCChhhHHhhCccc--ccccc----cccCCC--CCcchhhhhh
Q 027471 70 FVRNVMDMRAVYGG---FAAALKDLKVWVMNVVPIESPDTLPIIYERGLFG--LYHDW----CESFNT--YPRTYDLLHA 138 (223)
Q Consensus 70 ~iRnvLDmgaG~Gg---FAA~L~~~~V~vmnv~p~~~~~~l~~i~eRGLi~--~~~dw----ce~f~t--yPrtyDllH~ 138 (223)
.-|.|||+|||.|- |||.--.+.|.++-.+.- . -|.|-|+. .+.|- -+-.+. .|.-.|+|-+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~M-----A--qyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEM-----A--QYARKLVASNNLADRITVIPGKIEDIELPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHH-----H--HHHHHHHhcCCccceEEEccCccccccCchhccEEEe
Confidence 57899999999995 555555567777643221 1 12233322 11100 011111 5566666554
Q ss_pred hhhhcccccccchhHHHHhhhhcccCCcEEEEe--c-----cHHHHHHHHHHHHhCCCee
Q 027471 139 DHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR--D-----DAETIVEVEDLVKSLHWDV 191 (223)
Q Consensus 139 ~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~--D-----~~~~~~~i~~i~~~l~W~~ 191 (223)
.-.=..+-+.--++-++ -..|-|+|.|-..=+ | -.+..-.++..-+++-|--
T Consensus 250 EPMG~mL~NERMLEsYl-~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAnFWyQ 308 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYL-HARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKANFWYQ 308 (517)
T ss_pred ccchhhhhhHHHHHHHH-HHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhhhhhh
Confidence 31111111211122222 245999999987654 1 1223445666677777754
No 260
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=32.56 E-value=1.1e+02 Score=27.53 Aligned_cols=89 Identities=21% Similarity=0.204 Sum_probs=45.1
Q ss_pred eEEEeeCCch-HHHHHHhhCC-CeEEEEecCCC-CCCChhhHHhhCcccccccccc-cCCC--CCcchhhhhhhhhhccc
Q 027471 72 RNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIE-SPDTLPIIYERGLFGLYHDWCE-SFNT--YPRTYDLLHADHLFSTI 145 (223)
Q Consensus 72 RnvLDmgaG~-GgFAA~L~~~-~V~vmnv~p~~-~~~~l~~i~eRGLi~~~~dwce-~f~t--yPrtyDllH~~~lfs~~ 145 (223)
.+||=+|||. |.+|+.+++. +..|.-+...+ .+..++++.+.|..-+ +.-+ .+.. ..+.+|+ +|..
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~-----vid~- 245 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDL-----IIEA- 245 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCE-----EEEC-
Confidence 4566667764 5566666544 55444443322 3346677777775421 2110 1000 0011222 1111
Q ss_pred ccccchhHHHHhhhhcccCCcEEEEe
Q 027471 146 KKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 146 ~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
..-...+.+.-++|||||.+++-
T Consensus 246 ---~g~~~~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 246 ---TGVPPLAFEALPALAPNGVVILF 268 (355)
T ss_pred ---cCCHHHHHHHHHHccCCcEEEEE
Confidence 11125678888999999999874
No 261
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=31.48 E-value=1.9e+02 Score=20.47 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=40.2
Q ss_pred cccchhHHH--HhhhhcccCCcE-EEEeccHHHHHHHHHHHHhCCCeeEEeecCCCeeEEEEEe
Q 027471 147 KRCSLKAVV--AEVDRILRPDGN-LILRDDAETIVEVEDLVKSLHWDVRMIYTNDNQGMLCVHK 207 (223)
Q Consensus 147 ~rC~i~~vl--~E~DRILRPgG~-~ii~D~~~~~~~i~~i~~~l~W~~~~~~~~~~e~~L~~~K 207 (223)
..|.++.+. .++.. |.+|.. .++.|+......|.++++...+++......+++--++.+|
T Consensus 7 ~~CP~Pvi~~kkal~~-l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~~~~~~~~~~~i~k 69 (69)
T cd03422 7 EPCPYPAIATLEALPS-LKPGEILEVISDCPQSINNIPIDARNHGYKVLAIEQSGPTIRYLIQK 69 (69)
T ss_pred CcCCHHHHHHHHHHHc-CCCCCEEEEEecCchHHHHHHHHHHHcCCEEEEEEecCCEEEEEEEC
Confidence 368887433 34444 467775 5667888889999999999999986544444444444443
No 262
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=31.37 E-value=64 Score=32.10 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=52.8
Q ss_pred ccchhHh---hhhHHHHHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCC--------Ce--EEEEecCCCCCC---
Q 027471 42 PEDFTAD---YQHWKNVVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDL--------KV--WVMNVVPIESPD--- 105 (223)
Q Consensus 42 ~~~f~~D---~~~W~~~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--------~V--~vmnv~p~~~~~--- 105 (223)
.+.|.+. .+.|-+ ++- |++.-. .-..+-.+.||-.|+||||+.+.+. +| |+.|.-|.....
T Consensus 178 ~d~f~E~s~~eE~~Dr-Lr~-~VEECD-~lQGFq~l~Did~GfgG~as~~le~l~DEys~~~v~tw~~~~~p~s~~~s~k 254 (483)
T KOG2530|consen 178 YDVFTENSYQEEFCDR-LRF-YVEECD-TLQGFQLLSDIDDGFGGFASKLLEELQDEYSKKAVFTWGHNPRPFSQDFSMK 254 (483)
T ss_pred hhhhhccchhHHHHHH-HHH-HHHhcc-cccceEEEEecCCCchhHHHHHHHHHHHhhcCCceeccccCCCCCCcchhhh
Confidence 4445443 233433 554 665321 1124778999999999999998754 33 666664443321
Q ss_pred Ch-----hhHHhhCcccccccccc--cCCCCCcchhhhhhhhhhc
Q 027471 106 TL-----PIIYERGLFGLYHDWCE--SFNTYPRTYDLLHADHLFS 143 (223)
Q Consensus 106 ~l-----~~i~eRGLi~~~~dwce--~f~tyPrtyDllH~~~lfs 143 (223)
++ -.+-.+|++-+-..--. +++|-+..=|+.||+.+..
T Consensus 255 ~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~~~~~~~~tsA~~a 299 (483)
T KOG2530|consen 255 RLSNKWLKLNKALSLSQLSQECSLYFPLSTASGLGDLWETSAKLA 299 (483)
T ss_pred hhHHHHHHHHHHHHHHHHhhhcceeeccccccccccHHHHHHHHH
Confidence 22 23445566543331111 2333334446888876654
No 263
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=30.86 E-value=72 Score=28.08 Aligned_cols=93 Identities=15% Similarity=0.091 Sum_probs=48.6
Q ss_pred CCCCCceEEEeeCCch-HHHHHHhhCC-CeEEEEecCCCCCCChhhHHhhCcccccc----cccccCCCC-C-cchhhhh
Q 027471 66 INWSFVRNVMDMRAVY-GGFAAALKDL-KVWVMNVVPIESPDTLPIIYERGLFGLYH----DWCESFNTY-P-RTYDLLH 137 (223)
Q Consensus 66 i~~~~iRnvLDmgaG~-GgFAA~L~~~-~V~vmnv~p~~~~~~l~~i~eRGLi~~~~----dwce~f~ty-P-rtyDllH 137 (223)
+..+ .+||-.|+|. |.+++.|++. ++.|..+... ++..+++.+.|...++. ++.+.+..+ + +.+|++
T Consensus 157 l~~g--~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s--~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~v- 231 (337)
T cd08261 157 VTAG--DTVLVVGAGPIGLGVIQVAKARGARVIVVDID--DERLEFARELGADDTINVGDEDVAARLRELTDGEGADVV- 231 (337)
T ss_pred CCCC--CEEEEECCCHHHHHHHHHHHHcCCeEEEECCC--HHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEE-
Confidence 4444 3567778763 6676667655 6666655432 33455565666322221 111111111 1 234432
Q ss_pred hhhhhcccccccchhHHHHhhhhcccCCcEEEEe
Q 027471 138 ADHLFSTIKKRCSLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 138 ~~~lfs~~~~rC~i~~vl~E~DRILRPgG~~ii~ 171 (223)
|+... -...+.++-|.|+++|.++.-
T Consensus 232 ----ld~~g----~~~~~~~~~~~l~~~G~~i~~ 257 (337)
T cd08261 232 ----IDATG----NPASMEEAVELVAHGGRVVLV 257 (337)
T ss_pred ----EECCC----CHHHHHHHHHHHhcCCEEEEE
Confidence 11111 125678899999999999864
No 264
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=30.50 E-value=61 Score=27.22 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=30.2
Q ss_pred cccchhHHHHhhhhcccCCcEEEEe--ccHH-HHHHHHHHHHhCCCee
Q 027471 147 KRCSLKAVVAEVDRILRPDGNLILR--DDAE-TIVEVEDLVKSLHWDV 191 (223)
Q Consensus 147 ~rC~i~~vl~E~DRILRPgG~~ii~--D~~~-~~~~i~~i~~~l~W~~ 191 (223)
+|-.+..++.-.-++|+|+|.+.++ +... ..=.|+.+++.-...+
T Consensus 100 nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l 147 (166)
T PF10354_consen 100 NRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVL 147 (166)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEE
Confidence 4556668999999999999999998 3322 1223445655544443
No 265
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=28.32 E-value=60 Score=30.11 Aligned_cols=141 Identities=18% Similarity=0.270 Sum_probs=76.6
Q ss_pred hhhHHHHHhhhhhhccCCCC-----CCceEEEeeCCchHHHHHHhhCC-------------CeEEEEe---cCCCCC---
Q 027471 49 YQHWKNVVSKSYLNGMGINW-----SFVRNVMDMRAVYGGFAAALKDL-------------KVWVMNV---VPIESP--- 104 (223)
Q Consensus 49 ~~~W~~~v~~~Y~~~l~i~~-----~~iRnvLDmgaG~GgFAA~L~~~-------------~V~vmnv---~p~~~~--- 104 (223)
.+-|+.|-. | ++|.++. ..++.|.|+=|--|++.-.|.++ .+..+.+ +|.++-
T Consensus 18 e~gwRARSA--F-KLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~ql 94 (294)
T KOG1099|consen 18 ENGWRARSA--F-KLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQL 94 (294)
T ss_pred hccchHHhH--H-HHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEe
Confidence 356766543 2 2444332 24889999999999998776433 2555554 343331
Q ss_pred -------CChhhHHhhCcccccccccccCCCCC-cchhhhhhhhhhc--------ccccccchhHHHHhhhhcccCCcEE
Q 027471 105 -------DTLPIIYERGLFGLYHDWCESFNTYP-RTYDLLHADHLFS--------TIKKRCSLKAVVAEVDRILRPDGNL 168 (223)
Q Consensus 105 -------~~l~~i~eRGLi~~~~dwce~f~tyP-rtyDllH~~~lfs--------~~~~rC~i~~vl~E~DRILRPgG~~ 168 (223)
+|++.|.+ - |- .--|||-|++.=. .+.....+.--|.-.-+||||||.|
T Consensus 95 q~DIT~~stae~Ii~------------h---fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~F 159 (294)
T KOG1099|consen 95 QGDITSASTAEAIIE------------H---FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSF 159 (294)
T ss_pred ecccCCHhHHHHHHH------------H---hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCee
Confidence 12222221 1 22 1345544443321 1112222333444567999999999
Q ss_pred EE---e--ccHHHHHHHHHHHHhCCCeeEEe-ecCCCeeEEEEEe
Q 027471 169 IL---R--DDAETIVEVEDLVKSLHWDVRMI-YTNDNQGMLCVHK 207 (223)
Q Consensus 169 ii---~--D~~~~~~~i~~i~~~l~W~~~~~-~~~~~e~~L~~~K 207 (223)
+- | |+.-.-..++.++++++--.-.. -...-|-|++|.-
T Consensus 160 VaKifRg~~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~ 204 (294)
T KOG1099|consen 160 VAKIFRGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLG 204 (294)
T ss_pred ehhhhccCchHHHHHHHHHHhhceeeecCCccccccceeeeeecc
Confidence 64 4 44445578888888776443211 1223588888874
No 266
>PF14881 Tubulin_3: Tubulin domain
Probab=27.15 E-value=86 Score=26.78 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=24.6
Q ss_pred CceEEEeeCCchHHHHHHhhCC--------Ce-EEEEecC
Q 027471 70 FVRNVMDMRAVYGGFAAALKDL--------KV-WVMNVVP 100 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~~--------~V-~vmnv~p 100 (223)
.+-.+.|+-.|+||||+.+.+. +| |+.++.+
T Consensus 76 GfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~ 115 (180)
T PF14881_consen 76 GFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRD 115 (180)
T ss_pred ceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCC
Confidence 4788999999999999999754 54 7766643
No 267
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=25.01 E-value=87 Score=30.32 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=26.8
Q ss_pred HHHHhhhhcccCCcEEEEe----ccHHHH----HHHHHHHHhCCCeeE
Q 027471 153 AVVAEVDRILRPDGNLILR----DDAETI----VEVEDLVKSLHWDVR 192 (223)
Q Consensus 153 ~vl~E~DRILRPgG~~ii~----D~~~~~----~~i~~i~~~l~W~~~ 192 (223)
.+|.--=|.|||||.+|.+ .+.+.. +.++++-..+.|...
T Consensus 277 ~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~~ 324 (375)
T KOG2198|consen 277 RILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVDV 324 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhcCcccceee
Confidence 5666667899999999998 333333 445555566666654
No 268
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=24.83 E-value=44 Score=30.69 Aligned_cols=60 Identities=27% Similarity=0.494 Sum_probs=37.5
Q ss_pred CCchHHHHHHhhCC------CeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhcccccccch
Q 027471 78 RAVYGGFAAALKDL------KVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRCSL 151 (223)
Q Consensus 78 gaG~GgFAA~L~~~------~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC~i 151 (223)
|+|--+|.+.|.++ -+.|+|+-|... .| .||-|.|+=- --++
T Consensus 13 gSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae---------------------~f-~y~~~iDiRd----------lIsv 60 (273)
T KOG1534|consen 13 GSGKSTYCSSMYEHCETVGRSVHVVNLDPAAE---------------------HF-NYPVTIDIRD----------LISV 60 (273)
T ss_pred CCCcchHHHHHHHHHHhhCceeEEeecCHHHH---------------------hh-CCcccccHHH----------hccH
Confidence 56667899998765 577889977632 22 2666666511 1123
Q ss_pred hHHHHhhhhcccCCcEEEEe
Q 027471 152 KAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 152 ~~vl~E~DRILRPgG~~ii~ 171 (223)
.+||.|+| |-|.|-+++-
T Consensus 61 dDVmEdl~--~GPNGgLv~c 78 (273)
T KOG1534|consen 61 DDVMEDLD--LGPNGGLVYC 78 (273)
T ss_pred HHHHHHhc--cCCCccchhH
Confidence 47777743 6777777663
No 269
>COG1683 Uncharacterized conserved protein [Function unknown]
Probab=24.60 E-value=32 Score=29.45 Aligned_cols=21 Identities=33% Similarity=0.052 Sum_probs=18.9
Q ss_pred CCchHHHHHHhhCCCeEEEEe
Q 027471 78 RAVYGGFAAALKDLKVWVMNV 98 (223)
Q Consensus 78 gaG~GgFAA~L~~~~V~vmnv 98 (223)
..|.|-|||+|.+++++|++-
T Consensus 127 ~~G~Gvtaa~L~e~~~~v~~e 147 (156)
T COG1683 127 IAGSGVTAAALMENGIEVPSE 147 (156)
T ss_pred ccCccHHHHHHHHhCCccccc
Confidence 789999999999999999753
No 270
>PF04932 Wzy_C: O-Antigen ligase; InterPro: IPR007016 This group of bacterial proteins are membrane proteins, which include O-antigen ligases (e.g. P26471 from SWISSPROT) and putative hydrogen carbonate transporters [].
Probab=24.47 E-value=19 Score=28.20 Aligned_cols=43 Identities=23% Similarity=0.242 Sum_probs=26.0
Q ss_pred eCCchHHH-HHHhhCC-CeE--EEEecCCCCCC-ChhhHHhhCccccc
Q 027471 77 MRAVYGGF-AAALKDL-KVW--VMNVVPIESPD-TLPIIYERGLFGLY 119 (223)
Q Consensus 77 mgaG~GgF-AA~L~~~-~V~--vmnv~p~~~~~-~l~~i~eRGLi~~~ 119 (223)
.|.|+|+| ....... .-. .-+......|| .+|...|.|++|..
T Consensus 113 ~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~HN~~l~~~~~~Gi~Gl~ 160 (163)
T PF04932_consen 113 FGYGYGNFGGAYSANYKYYMYNSPGEHYDHPHNQYLQILVETGIIGLA 160 (163)
T ss_pred eeECCCcccHHHHHhhhhhhccccccCCCCcHHHHHHHHHHHHHHHHH
Confidence 78888887 3332222 111 11233444565 99999999999864
No 271
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=23.69 E-value=78 Score=31.64 Aligned_cols=99 Identities=18% Similarity=0.112 Sum_probs=54.7
Q ss_pred ceEEEeeCCch--HHHHHHhhCCC-e-EEEEecCCCCCC-----------ChhhHHhhCcccccccccccCCCCC-cchh
Q 027471 71 VRNVMDMRAVY--GGFAAALKDLK-V-WVMNVVPIESPD-----------TLPIIYERGLFGLYHDWCESFNTYP-RTYD 134 (223)
Q Consensus 71 iRnvLDmgaG~--GgFAA~L~~~~-V-~vmnv~p~~~~~-----------~l~~i~eRGLi~~~~dwce~f~tyP-rtyD 134 (223)
-+.++|+|.|. |+.|+.+.-+. + -+++|-+..+.. +..-.+-|++ ..|+ +.+|-=+ .-||
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~--~~~r--~~~pi~~~~~yD 276 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKL--VFHR--QRLPIDIKNGYD 276 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhcccc--chhc--ccCCCCccccee
Confidence 34577776654 55777777664 2 233443332221 2222333332 2221 2333333 5599
Q ss_pred hhhhhhhhcccccccchhHHHHhhh-hcccCCcEEEEecc
Q 027471 135 LLHADHLFSTIKKRCSLKAVVAEVD-RILRPDGNLILRDD 173 (223)
Q Consensus 135 llH~~~lfs~~~~rC~i~~vl~E~D-RILRPgG~~ii~D~ 173 (223)
++=|++..+...+.-.-.++..+.- +..||||++|+-..
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~ 316 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEK 316 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEec
Confidence 9999888877665443345555544 47899999998633
No 272
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=23.42 E-value=71 Score=32.25 Aligned_cols=73 Identities=18% Similarity=0.187 Sum_probs=44.2
Q ss_pred CCccchhHhhhhHHHHHhhhhh-hccCCCCCCceEEEeeCCchHHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCc
Q 027471 40 AAPEDFTADYQHWKNVVSKSYL-NGMGINWSFVRNVMDMRAVYGGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGL 115 (223)
Q Consensus 40 ~~~~~f~~D~~~W~~~v~~~Y~-~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGL 115 (223)
+|+..|=..+..=-..+- +|+ +.++++.+ ..++|+=||+|.|+-+|+.+ .|.-+=++|...++...-+.+-|+
T Consensus 355 iSp~AFFQ~Nt~~aevLy-s~i~e~~~l~~~--k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi 430 (534)
T KOG2187|consen 355 ISPGAFFQTNTSAAEVLY-STIGEWAGLPAD--KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI 430 (534)
T ss_pred ECCchhhccCcHHHHHHH-HHHHHHhCCCCC--cEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc
Confidence 455555333333333333 356 34455555 78999999999999999988 566566666555443333344454
No 273
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=22.77 E-value=46 Score=29.07 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=16.2
Q ss_pred CceEEEeeCCchHHHHHHhhC
Q 027471 70 FVRNVMDMRAVYGGFAAALKD 90 (223)
Q Consensus 70 ~iRnvLDmgaG~GgFAA~L~~ 90 (223)
.--+|+++|+|.|.+|+.+++
T Consensus 18 ~~~~ivE~GaG~G~La~diL~ 38 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILR 38 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHH
Confidence 346899999999999998754
No 274
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=22.37 E-value=39 Score=32.54 Aligned_cols=15 Identities=27% Similarity=0.735 Sum_probs=13.2
Q ss_pred CC-cchhhhhhhhhhc
Q 027471 129 YP-RTYDLLHADHLFS 143 (223)
Q Consensus 129 yP-rtyDllH~~~lfs 143 (223)
|| +|.+++|++..++
T Consensus 158 fP~~Slh~~~Ss~slH 173 (386)
T PLN02668 158 FPARSIDVFHSAFSLH 173 (386)
T ss_pred cCCCceEEEEeeccce
Confidence 89 9999999987765
No 275
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=22.33 E-value=70 Score=22.89 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=30.3
Q ss_pred cchhhhhhhhhhcccccccchhHHHHhhhhcccCC-cEEEEeccHHHHHHHHHHH
Q 027471 131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPD-GNLILRDDAETIVEVEDLV 184 (223)
Q Consensus 131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPg-G~~ii~D~~~~~~~i~~i~ 184 (223)
|.|+..-|+ .+.+..---+++.++.+| ..+.++|..+..+++..++
T Consensus 14 r~~E~~a~G--------~~vi~~~~~~~~~~~~~~~~~~~~~~~~el~~~i~~ll 60 (92)
T PF13524_consen 14 RIFEAMACG--------TPVISDDSPGLREIFEDGEHIITYNDPEELAEKIEYLL 60 (92)
T ss_pred HHHHHHHCC--------CeEEECChHHHHHHcCCCCeEEEECCHHHHHHHHHHHH
Confidence 888888886 333333336888899999 6666676655566665543
No 276
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=22.15 E-value=1.9e+02 Score=25.90 Aligned_cols=85 Identities=13% Similarity=-0.017 Sum_probs=45.9
Q ss_pred eEEEeeCCc-hHHHHHHhhC-CCeEEEEecCCCCCCChhhHHhhCcccccccccccCCCCCcchhhhhhhhhhccccccc
Q 027471 72 RNVMDMRAV-YGGFAAALKD-LKVWVMNVVPIESPDTLPIIYERGLFGLYHDWCESFNTYPRTYDLLHADHLFSTIKKRC 149 (223)
Q Consensus 72 RnvLDmgaG-~GgFAA~L~~-~~V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~f~tyPrtyDllH~~~lfs~~~~rC 149 (223)
.+||=.||| .|.+|+.+++ .++.|+-+... +..++++.+-|.-.++.. . .+-++.+|++-- ++
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~--~~~~~~a~~~Ga~~vi~~--~--~~~~~~~d~~i~---~~------ 231 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTRG--AAARRLALALGAASAGGA--Y--DTPPEPLDAAIL---FA------ 231 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCC--hHHHHHHHHhCCceeccc--c--ccCcccceEEEE---CC------
Confidence 467777865 4445555544 36655544322 335778888776433220 0 011133553210 11
Q ss_pred chhHHHHhhhhcccCCcEEEEe
Q 027471 150 SLKAVVAEVDRILRPDGNLILR 171 (223)
Q Consensus 150 ~i~~vl~E~DRILRPgG~~ii~ 171 (223)
.....+.+.=+.|||||.+++-
T Consensus 232 ~~~~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 232 PAGGLVPPALEALDRGGVLAVA 253 (329)
T ss_pred CcHHHHHHHHHhhCCCcEEEEE
Confidence 1124677777899999999884
No 277
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=21.10 E-value=31 Score=28.56 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=10.3
Q ss_pred CCcchhhhhhhhh
Q 027471 129 YPRTYDLLHADHL 141 (223)
Q Consensus 129 yPrtyDllH~~~l 141 (223)
.+.+||++|.+|+
T Consensus 7 ~~G~FDl~H~GHi 19 (150)
T cd02174 7 VDGCFDLFHYGHA 19 (150)
T ss_pred EeCccCCCCHHHH
Confidence 3589999999843
No 278
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=20.87 E-value=69 Score=27.97 Aligned_cols=119 Identities=15% Similarity=0.183 Sum_probs=63.5
Q ss_pred HHhhhhhhccCCCCCCceEEEeeCCchHHHHHHhhCCCeEEEEecCCCCCCChhhHH----hhC---ccccccc-ccccC
Q 027471 55 VVSKSYLNGMGINWSFVRNVMDMRAVYGGFAAALKDLKVWVMNVVPIESPDTLPIIY----ERG---LFGLYHD-WCESF 126 (223)
Q Consensus 55 ~v~~~Y~~~l~i~~~~iRnvLDmgaG~GgFAA~L~~~~V~vmnv~p~~~~~~l~~i~----eRG---Li~~~~d-wce~f 126 (223)
+|+++-.+.|+-..-.--.+||+=||+|+.+..=++|+.--.-++..+.. ..+++. .=| -..+++. =...+
T Consensus 28 rVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~-a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 28 RVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRK-AVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred HHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHH-HHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 55554444443111235579999999999999999996544444444432 222211 112 2223332 11111
Q ss_pred CCCC-c-chhhhhhhhhhccc-ccccchhHHHHhhhhcccCCcEEEEeccHH
Q 027471 127 NTYP-R-TYDLLHADHLFSTI-KKRCSLKAVVAEVDRILRPDGNLILRDDAE 175 (223)
Q Consensus 127 ~tyP-r-tyDllH~~~lfs~~-~~rC~i~~vl~E~DRILRPgG~~ii~D~~~ 175 (223)
+.-. + .||+|-.+-=|... .+. .+..+.++-..+|+|+|.+++--..+
T Consensus 107 ~~~~~~~~FDlVflDPPy~~~l~~~-~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 107 KQLGTREPFDLVFLDPPYAKGLLDK-ELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HhcCCCCcccEEEeCCCCccchhhH-HHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 1222 2 49998877555411 111 12244555778999999999974433
No 279
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=20.62 E-value=1.3e+02 Score=27.53 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=55.6
Q ss_pred CceEEEeeCCch-HHHHHHhhCC--CeEEEEecCCCCCCChhhHHhhCcc--cccccccccCCC-CCcchhhhhhhhhhc
Q 027471 70 FVRNVMDMRAVY-GGFAAALKDL--KVWVMNVVPIESPDTLPIIYERGLF--GLYHDWCESFNT-YPRTYDLLHADHLFS 143 (223)
Q Consensus 70 ~iRnvLDmgaG~-GgFAA~L~~~--~V~vmnv~p~~~~~~l~~i~eRGLi--~~~~dwce~f~t-yPrtyDllH~~~lfs 143 (223)
.-+++|=+|=.- -|.|++|... .|+|+.+-..--.--..++-+.|+. ...||...+||. +-+.||+++++--.+
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence 357788887553 4678888554 6888877332111122334556763 478999999998 669999988873332
Q ss_pred ccccccchhHHHHhhhhcccCCc---EEEEecc---HHHHHHHHHHHHhCCCeeE
Q 027471 144 TIKKRCSLKAVVAEVDRILRPDG---NLILRDD---AETIVEVEDLVKSLHWDVR 192 (223)
Q Consensus 144 ~~~~rC~i~~vl~E~DRILRPgG---~~ii~D~---~~~~~~i~~i~~~l~W~~~ 192 (223)
... +.-++-=-=--||..| ||-++.. .+.+.++|+++-.|.--+.
T Consensus 124 ~~G----~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 124 PEG----LKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp HHH----HHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred HHH----HHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 110 0111110011344433 6666644 4567889998888887764
No 280
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=20.32 E-value=2.1e+02 Score=24.83 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=74.8
Q ss_pred EEeeCCchHHHHHHhhCCC----eEEEEecCCCCCCChhhHHhhCccccccccccc-CCCCC--cchhhhhhhhhhcccc
Q 027471 74 VMDMRAVYGGFAAALKDLK----VWVMNVVPIESPDTLPIIYERGLFGLYHDWCES-FNTYP--RTYDLLHADHLFSTIK 146 (223)
Q Consensus 74 vLDmgaG~GgFAA~L~~~~----V~vmnv~p~~~~~~l~~i~eRGLi~~~~dwce~-f~tyP--rtyDllH~~~lfs~~~ 146 (223)
|.|+||--|=.+.+|.+++ |+.+.+.|---....+-+...||-.-+.-.|.. |+..+ ...|.+=-++ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG-----M 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG-----M 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE-----E
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec-----C
Confidence 6799999999999999885 455666543222355556667876655433332 44333 1234432221 1
Q ss_pred cccchhHHHHhhhhcccCCcEEEEeccHHHHHHHHHHHHhCCCeeEEee----cCCCeeEEEEEecccC
Q 027471 147 KRCSLKAVVAEVDRILRPDGNLILRDDAETIVEVEDLVKSLHWDVRMIY----TNDNQGMLCVHKTYWR 211 (223)
Q Consensus 147 ~rC~i~~vl~E~DRILRPgG~~ii~D~~~~~~~i~~i~~~l~W~~~~~~----~~~~e~~L~~~K~~w~ 211 (223)
..-.|.++|.+.-..++.--.||+.-. .....+.+.+....|...-.+ ...--.++.+.++--.
T Consensus 76 GG~lI~~ILe~~~~~~~~~~~lILqP~-~~~~~LR~~L~~~gf~I~~E~lv~e~~~~YeIi~~~~~~~~ 143 (205)
T PF04816_consen 76 GGELIIEILEAGPEKLSSAKRLILQPN-THAYELRRWLYENGFEIIDEDLVEENGRFYEIIVAERGEEK 143 (205)
T ss_dssp -HHHHHHHHHHTGGGGTT--EEEEEES-S-HHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEESSS-
T ss_pred CHHHHHHHHHhhHHHhccCCeEEEeCC-CChHHHHHHHHHCCCEEEEeEEEeECCEEEEEEEEEeCCCC
Confidence 123456888888788887778888644 456789999999999975321 1122456666665443
No 281
>PF12668 DUF3791: Protein of unknown function (DUF3791); InterPro: IPR024269 This entry represents proteins of unknown function.
Probab=20.17 E-value=57 Score=22.92 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=18.9
Q ss_pred cchhhhhhhhhhcccccccchhHHHHhhhhcccCCc
Q 027471 131 RTYDLLHADHLFSTIKKRCSLKAVVAEVDRILRPDG 166 (223)
Q Consensus 131 rtyDllH~~~lfs~~~~rC~i~~vl~E~DRILRPgG 166 (223)
.-||.+|+. +.+.++-|+.++|+--|
T Consensus 37 ~~Yd~lHt~----------s~~yivedi~~~l~~~g 62 (62)
T PF12668_consen 37 DCYDVLHTQ----------SDEYIVEDIIEYLKNRG 62 (62)
T ss_pred HcchHHHHC----------cHHHHHHHHHHHHHhcC
Confidence 358999986 35688888888877543
Done!