BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027472
         (223 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3S6K|A Chain A, Crystal Structure Of Xcnags
          Length = 467

 Score = 32.3 bits (72), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 37  PQKFANVHKVFGASNVTKLLNELQPS-QREDAVNSLAYEAEMRLRDPVYGCVGVI 90
           P   A V KVF ASN+ KL+  LQ +  R  ++    +EAE   RD  YG VG +
Sbjct: 126 PHALAIVRKVFQASNL-KLVEALQQNGARATSITGGVFEAEYLNRD-TYGLVGEV 178


>pdb|2IXD|A Chain A, Crystal Structure Of The Putative Deacetylase Bc1534 From
           Bacilus Cereus
 pdb|2IXD|B Chain B, Crystal Structure Of The Putative Deacetylase Bc1534 From
           Bacilus Cereus
          Length = 242

 Score = 29.3 bits (64), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 20  RKCQPECVFAPYFP---PDQPQKFANVHKVFGASNVTKLLNELQPSQREDAVNSL 71
           R  +P+ VFAPY+    PD       V +   ++ + K + EL P + E   N +
Sbjct: 94  RTYKPKLVFAPYYEDRHPDHANCAKLVEEAIFSAGIRKYMPELSPHRVESFYNYM 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,134,181
Number of Sequences: 62578
Number of extensions: 116137
Number of successful extensions: 180
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 2
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)