Query 027472
Match_columns 223
No_of_seqs 126 out of 302
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 10:25:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 6.1E-50 1.3E-54 313.1 9.6 101 11-111 1-101 (101)
2 COG3416 Uncharacterized protei 82.3 4.1 9E-05 37.0 6.3 67 51-117 11-77 (233)
3 PRK10265 chaperone-modulator p 73.1 7.4 0.00016 30.3 4.6 34 84-117 67-100 (101)
4 PF09849 DUF2076: Uncharacteri 72.0 12 0.00025 34.1 6.2 63 51-113 11-73 (247)
5 PF09006 Surfac_D-trimer: Lung 70.7 9.7 0.00021 27.0 4.2 30 90-119 1-30 (46)
6 PF11333 DUF3135: Protein of u 70.6 15 0.00033 28.3 5.7 66 35-104 15-82 (83)
7 PLN02523 galacturonosyltransfe 68.1 15 0.00032 37.3 6.5 68 54-126 145-214 (559)
8 PF07106 TBPIP: Tat binding pr 63.5 6.6 0.00014 32.5 2.7 90 33-122 16-113 (169)
9 PF13334 DUF4094: Domain of un 61.3 7.9 0.00017 30.4 2.6 23 88-110 73-95 (95)
10 PF06305 DUF1049: Protein of u 45.6 43 0.00093 23.3 4.1 26 89-114 42-67 (68)
11 PF06698 DUF1192: Protein of u 44.9 41 0.00089 24.7 3.9 26 90-115 23-48 (59)
12 PLN02742 Probable galacturonos 41.6 71 0.0015 32.4 6.3 61 62-126 132-192 (534)
13 PF05308 Mito_fiss_reg: Mitoch 40.3 32 0.00069 31.4 3.4 30 95-124 122-151 (253)
14 PF12097 DUF3573: Protein of u 38.2 36 0.00079 33.1 3.5 22 89-110 43-64 (383)
15 COG5509 Uncharacterized small 37.1 61 0.0013 24.4 3.8 24 90-113 27-50 (65)
16 KOG4552 Vitamin-D-receptor int 36.8 95 0.0021 28.7 5.8 65 42-114 47-118 (272)
17 cd04766 HTH_HspR Helix-Turn-He 36.7 59 0.0013 24.2 3.8 24 89-112 66-89 (91)
18 cd01111 HTH_MerD Helix-Turn-He 36.0 1E+02 0.0023 24.0 5.3 28 86-113 78-105 (107)
19 PF10883 DUF2681: Protein of u 35.1 69 0.0015 25.1 4.1 27 90-116 32-58 (87)
20 PF15483 DUF4641: Domain of un 33.0 52 0.0011 32.7 3.8 32 83-115 414-445 (445)
21 PF04706 Dickkopf_N: Dickkopf 31.0 30 0.00066 24.6 1.4 17 9-25 20-36 (52)
22 PF12325 TMF_TATA_bd: TATA ele 30.8 93 0.002 25.4 4.4 30 85-114 13-42 (120)
23 PF11471 Sugarporin_N: Maltopo 30.6 95 0.0021 22.6 3.9 22 93-114 30-51 (60)
24 PF04728 LPP: Lipoprotein leuc 30.2 98 0.0021 22.6 3.9 23 90-112 12-34 (56)
25 cd00089 HR1 Protein kinase C-r 29.4 1.5E+02 0.0033 21.3 4.9 29 88-116 42-70 (72)
26 PF15300 INT_SG_DDX_CT_C: INTS 29.3 54 0.0012 24.5 2.5 27 50-76 23-51 (65)
27 PF13591 MerR_2: MerR HTH fami 29.3 65 0.0014 24.1 3.0 23 86-108 61-83 (84)
28 PF06295 DUF1043: Protein of u 29.0 66 0.0014 26.1 3.2 19 98-116 28-46 (128)
29 KOG4196 bZIP transcription fac 28.4 90 0.002 26.6 4.0 54 63-116 54-109 (135)
30 PF12001 DUF3496: Domain of un 28.4 77 0.0017 25.9 3.5 28 92-119 4-39 (111)
31 PRK00451 glycine dehydrogenase 28.2 44 0.00095 30.9 2.3 33 29-62 2-34 (447)
32 PF04977 DivIC: Septum formati 28.0 1.1E+02 0.0025 21.4 4.0 25 90-114 26-50 (80)
33 PHA02047 phage lambda Rz1-like 27.7 1.2E+02 0.0026 24.7 4.4 33 85-117 18-56 (101)
34 PRK00888 ftsB cell division pr 26.1 1.3E+02 0.0027 23.8 4.2 17 90-106 29-45 (105)
35 cd00584 Prefoldin_alpha Prefol 25.4 1.5E+02 0.0032 23.2 4.5 24 91-114 9-32 (129)
36 PF04977 DivIC: Septum formati 25.3 1.7E+02 0.0038 20.4 4.5 27 89-115 18-44 (80)
37 PF14282 FlxA: FlxA-like prote 25.2 1.1E+02 0.0024 24.0 3.8 26 89-114 52-77 (106)
38 PF06696 Strep_SA_rep: Strepto 24.9 1.8E+02 0.0039 18.1 3.9 22 93-114 3-24 (25)
39 PRK10803 tol-pal system protei 24.8 1.1E+02 0.0023 27.6 4.1 26 88-113 54-79 (263)
40 PLN02867 Probable galacturonos 24.4 4.6E+02 0.01 26.8 8.7 60 63-126 117-176 (535)
41 PLN02910 polygalacturonate 4-a 23.8 2.9E+02 0.0062 29.0 7.2 60 63-126 254-313 (657)
42 PRK11677 hypothetical protein; 23.8 91 0.002 26.1 3.2 21 96-116 30-50 (134)
43 PHA02562 46 endonuclease subun 23.3 1.1E+02 0.0024 29.2 4.1 28 27-54 140-167 (562)
44 PF03242 LEA_3: Late embryogen 23.1 29 0.00063 27.4 0.2 19 72-90 58-76 (93)
45 PRK01203 prefoldin subunit alp 22.9 1.7E+02 0.0036 24.5 4.5 25 90-114 9-33 (130)
46 TIGR02209 ftsL_broad cell divi 22.4 1.5E+02 0.0032 21.4 3.7 31 88-118 31-61 (85)
47 PF13600 DUF4140: N-terminal d 21.9 1.7E+02 0.0036 22.1 4.1 29 87-115 69-97 (104)
48 PF11387 DUF2795: Protein of u 21.8 99 0.0022 20.9 2.5 32 32-63 6-37 (44)
49 PF02185 HR1: Hr1 repeat; Int 21.8 2.4E+02 0.0052 20.1 4.7 28 89-116 34-61 (70)
50 cd00890 Prefoldin Prefoldin is 21.0 1.4E+02 0.0031 22.8 3.6 24 91-114 9-32 (129)
51 PF07334 IFP_35_N: Interferon- 21.0 1.3E+02 0.0029 23.2 3.3 27 90-116 2-28 (76)
52 PF04728 LPP: Lipoprotein leuc 20.7 2E+02 0.0043 21.0 4.0 23 90-112 19-41 (56)
53 PF15397 DUF4618: Domain of un 20.6 1.5E+02 0.0031 27.5 4.1 55 51-113 52-106 (258)
54 cd04772 HTH_TioE_rpt1 First He 20.4 2.3E+02 0.005 21.6 4.6 24 88-111 76-99 (99)
55 smart00150 SPEC Spectrin repea 20.4 2.5E+02 0.0054 19.3 4.5 40 80-119 23-62 (101)
56 PF08227 DASH_Hsk3: DASH compl 20.2 2E+02 0.0043 20.1 3.8 25 89-113 3-27 (45)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=6.1e-50 Score=313.09 Aligned_cols=101 Identities=67% Similarity=1.221 Sum_probs=99.8
Q ss_pred CChhhhhhhcCCCCCCcCCCCCCCCCchhHHHHHHhhchhhHHHHHhhcCCcchHHHHHHHHHHHhhhccCCCCcchHHH
Q 027472 11 PCAACKLLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELQPSQREDAVNSLAYEAEMRLRDPVYGCVGVI 90 (223)
Q Consensus 11 ~CAACK~lRRkC~~~CilAPYFPadq~~~F~~vhkvFG~sNV~kmL~~lpp~qR~dA~~SLvYEA~aR~rDPVyGCvGiI 90 (223)
+|||||+|||||+++|+||||||++++++|++||||||++||+|||+++||++|+++|+||+|||++|.+||||||+|+|
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i 80 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII 80 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027472 91 SFLQHRLRQLQMDLSCAKSEL 111 (223)
Q Consensus 91 ~~Lq~QL~~lq~eLa~aq~eL 111 (223)
|.|+|||+++++||+.+++||
T Consensus 81 ~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHccC
Confidence 999999999999999999886
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.32 E-value=4.1 Score=37.01 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=60.0
Q ss_pred hHHHHHhhcCCcchHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027472 51 NVTKLLNELQPSQREDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQNL 117 (223)
Q Consensus 51 NV~kmL~~lpp~qR~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~ 117 (223)
|+..-|+......|+..++.||-|+-++.-|--|=-+-.|..+++-|+.++.+|+.++.+|+..+..
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445567777789999999999999999999999999999999999999999999999999988774
No 3
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=73.15 E-value=7.4 Score=30.28 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=30.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027472 84 YGCVGVISFLQHRLRQLQMDLSCAKSELSKYQNL 117 (223)
Q Consensus 84 yGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~ 117 (223)
.-.+++|..|-.||++++.|+...+.+|.+|...
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~~~~~ 100 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSRFVAH 100 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3457899999999999999999999999998754
No 4
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=72.01 E-value=12 Score=34.12 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=56.6
Q ss_pred hHHHHHhhcCCcchHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027472 51 NVTKLLNELQPSQREDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSK 113 (223)
Q Consensus 51 NV~kmL~~lpp~qR~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~ 113 (223)
++..-|+.++...|+.-++.||-|.-.|.-|-+|=-+=.|..++.-|++++++|+.++.+|..
T Consensus 11 ~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 11 DLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344557777777899999999999999999999999999999999999999999999999854
No 5
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=70.74 E-value=9.7 Score=26.96 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSKYQNLGH 119 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~y~~~~~ 119 (223)
|..|.+|+..++.+|...++.+..|+-...
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~l 30 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAEL 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999986543
No 6
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=70.63 E-value=15 Score=28.30 Aligned_cols=66 Identities=15% Similarity=0.306 Sum_probs=52.2
Q ss_pred CCchhHHHHHHhhchhhHHHHHhhcCCcc--hHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHH
Q 027472 35 DQPQKFANVHKVFGASNVTKLLNELQPSQ--REDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDL 104 (223)
Q Consensus 35 dq~~~F~~vhkvFG~sNV~kmL~~lpp~q--R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eL 104 (223)
++|++|....+ .-+-.++...|++. |-.++.+=|=---.|.++|+.-|+-+...+..++..+...|
T Consensus 15 ~dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 15 NDPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred hCHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 57888887654 45667888888875 45666777777778899999999999999999988877654
No 7
>PLN02523 galacturonosyltransferase
Probab=68.11 E-value=15 Score=37.31 Aligned_cols=68 Identities=12% Similarity=0.115 Sum_probs=54.8
Q ss_pred HHHhhcCCc--chHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 027472 54 KLLNELQPS--QREDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQNLGHAGLIAAA 126 (223)
Q Consensus 54 kmL~~lpp~--qR~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~~~~~~~~~~ 126 (223)
..|++||++ +|-.+|+.++++|.. +|-|..+|.+|+..|..+++++..++.+-+.+.++++.......
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~l 214 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSL 214 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 345667754 677999999999993 44467899999999999999999999998888888776655443
No 8
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.52 E-value=6.6 Score=32.48 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=62.1
Q ss_pred CCCCchhHHHHHHhhchhhHHHHHhhcCCcchH---HHHHHHHHHHhhhccCCCCcc-----hHHHHHHHHHHHHHHHHH
Q 027472 33 PPDQPQKFANVHKVFGASNVTKLLNELQPSQRE---DAVNSLAYEAEMRLRDPVYGC-----VGVISFLQHRLRQLQMDL 104 (223)
Q Consensus 33 Padq~~~F~~vhkvFG~sNV~kmL~~lpp~qR~---dA~~SLvYEA~aR~rDPVyGC-----vGiI~~Lq~QL~~lq~eL 104 (223)
|.+-..-|.|.|.-||-..|.|.|..|-.+.+- ..=.+.||=++--.-+-+..- =.-|..|+.++..++.++
T Consensus 16 Pys~~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~ 95 (169)
T PF07106_consen 16 PYSAQDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEV 95 (169)
T ss_pred CCcHHHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445557899999999999999999998654331 222455665554433322221 235788888888888888
Q ss_pred HHHHHHHHhhhhcccccc
Q 027472 105 SCAKSELSKYQNLGHAGL 122 (223)
Q Consensus 105 a~aq~eLa~y~~~~~~~~ 122 (223)
..++++|.......+...
T Consensus 96 k~l~~eL~~L~~~~t~~e 113 (169)
T PF07106_consen 96 KSLEAELASLSSEPTNEE 113 (169)
T ss_pred HHHHHHHHHHhcCCCHHH
Confidence 888888888877765543
No 9
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=61.29 E-value=7.9 Score=30.40 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027472 88 GVISFLQHRLRQLQMDLSCAKSE 110 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq~e 110 (223)
-.|..|...|..||+||+.+|++
T Consensus 73 ~aIq~LdKtIS~LEMELAaARa~ 95 (95)
T PF13334_consen 73 EAIQSLDKTISSLEMELAAARAE 95 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45788999999999999988864
No 10
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=45.62 E-value=43 Score=23.33 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027472 89 VISFLQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
..+.+++++.+++.+++.++.|++.-
T Consensus 42 ~~~~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 42 SRLRLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677888999999999998888753
No 11
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=44.90 E-value=41 Score=24.67 Aligned_cols=26 Identities=15% Similarity=0.341 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSKYQ 115 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~y~ 115 (223)
|-.|+..|..|++|++.+++++.+-+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888889999988888887544
No 12
>PLN02742 Probable galacturonosyltransferase
Probab=41.57 E-value=71 Score=32.44 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=50.5
Q ss_pred cchHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 027472 62 SQREDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQNLGHAGLIAAA 126 (223)
Q Consensus 62 ~qR~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~~~~~~~~~~ 126 (223)
+++-..|+.++++|.-- -|.|--++.+|...|..+++|+..++.+-+.+.++++.......
T Consensus 132 ~~~~~~m~~~i~~ak~~----~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~l 192 (534)
T PLN02742 132 EPIIRDLAALIYQAQDL----HYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSL 192 (534)
T ss_pred HHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 35678888899888654 45599999999999999999999999999888888877665544
No 13
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=40.28 E-value=32 Score=31.37 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 027472 95 HRLRQLQMDLSCAKSELSKYQNLGHAGLIA 124 (223)
Q Consensus 95 ~QL~~lq~eLa~aq~eLa~y~~~~~~~~~~ 124 (223)
++|..||.||..+|++|+++....-.....
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~qe~~~~~ 151 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQEQSNST 151 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 577889999999999999888766444333
No 14
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=38.16 E-value=36 Score=33.10 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027472 89 VISFLQHRLRQLQMDLSCAKSE 110 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~e 110 (223)
.|.+||+||.+||.||..++++
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999988877
No 15
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=37.08 E-value=61 Score=24.42 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSK 113 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~ 113 (223)
|-.|.+.|..||.|++.+++|+.+
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777777777764
No 16
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=36.76 E-value=95 Score=28.72 Aligned_cols=65 Identities=26% Similarity=0.351 Sum_probs=42.2
Q ss_pred HHHHhhchh--hHHHHHhhcCC-cchHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHH----HHHHHHhh
Q 027472 42 NVHKVFGAS--NVTKLLNELQP-SQREDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSC----AKSELSKY 114 (223)
Q Consensus 42 ~vhkvFG~s--NV~kmL~~lpp-~qR~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~----aq~eLa~y 114 (223)
++-++|-.. -+.+||+-+++ .+|+.+|+.|--+-+.|.+ .|.+||.+|...+.-|.. |+.+|+.+
T Consensus 47 ~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~--------~IQqLqk~LK~aE~iLtta~fqA~qKLksi 118 (272)
T KOG4552|consen 47 NILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDE--------VIQQLQKNLKSAEVILTTACFQANQKLKSI 118 (272)
T ss_pred HHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555332 34566666554 3688999998666555543 699999999988777665 45555433
No 17
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=36.69 E-value=59 Score=24.19 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 89 VISFLQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~eLa 112 (223)
.|..|..|++.++.+|+..+.+|.
T Consensus 66 ~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 66 RILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344599999999999999988875
No 18
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=35.97 E-value=1e+02 Score=24.01 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=23.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027472 86 CVGVISFLQHRLRQLQMDLSCAKSELSK 113 (223)
Q Consensus 86 CvGiI~~Lq~QL~~lq~eLa~aq~eLa~ 113 (223)
|...+..+..+|++.+.+|..++.+|..
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~ 105 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAE 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888999999999999988875
No 19
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=35.14 E-value=69 Score=25.13 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
+-.|+.+.++++.|.+.+++++..|+-
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888888888877754
No 20
>PF15483 DUF4641: Domain of unknown function (DUF4641)
Probab=33.00 E-value=52 Score=32.70 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=26.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027472 83 VYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQ 115 (223)
Q Consensus 83 VyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~ 115 (223)
+-||-.-|+ ||++|++|++||+.++.-..+|+
T Consensus 414 ~qGCpRC~~-LQkEIedLreQLaamqsl~~kfq 445 (445)
T PF15483_consen 414 AQGCPRCLV-LQKEIEDLREQLAAMQSLADKFQ 445 (445)
T ss_pred CCCCcccHH-HHHHHHHHHHHHHHHHHHHHhhC
Confidence 457777664 89999999999999998877664
No 21
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=30.95 E-value=30 Score=24.61 Aligned_cols=17 Identities=29% Similarity=0.909 Sum_probs=15.3
Q ss_pred CCCChhhhhhhcCCCCC
Q 027472 9 NSPCAACKLLRRKCQPE 25 (223)
Q Consensus 9 ~~~CAACK~lRRkC~~~ 25 (223)
...|..||-+|++|..|
T Consensus 20 ~~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 20 ESKCLPCRKRRKRCTRD 36 (52)
T ss_pred CccChhhccCCCCCCCC
Confidence 48999999999999975
No 22
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=30.77 E-value=93 Score=25.43 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=21.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027472 85 GCVGVISFLQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 85 GCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
..+.+|..|+.+|.+++.|+..+|.+|++.
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l 42 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARL 42 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777777654
No 23
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=30.63 E-value=95 Score=22.59 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 027472 93 LQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 93 Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
+++.|..++.+|..++.++..+
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~a 51 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAA 51 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555443
No 24
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=30.20 E-value=98 Score=22.62 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa 112 (223)
|+.|+.+|.+|..++..++.++.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666555554
No 25
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=29.42 E-value=1.5e+02 Score=21.32 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 88 GVISFLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
|.+...+.++......|...+.+|..|..
T Consensus 42 ~~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 42 KLLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788899999999999999999998875
No 26
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=29.30 E-value=54 Score=24.46 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.4
Q ss_pred hhHHHHHhhc--CCcchHHHHHHHHHHHh
Q 027472 50 SNVTKLLNEL--QPSQREDAVNSLAYEAE 76 (223)
Q Consensus 50 sNV~kmL~~l--pp~qR~dA~~SLvYEA~ 76 (223)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4688899887 67889999999999995
No 27
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=29.26 E-value=65 Score=24.11 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 027472 86 CVGVISFLQHRLRQLQMDLSCAK 108 (223)
Q Consensus 86 CvGiI~~Lq~QL~~lq~eLa~aq 108 (223)
.+++|..|-.+|..++.||...+
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999988765
No 28
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.98 E-value=66 Score=26.07 Aligned_cols=19 Identities=37% Similarity=0.618 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 027472 98 RQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 98 ~~lq~eLa~aq~eLa~y~~ 116 (223)
.+++.||..++.||..|+.
T Consensus 28 ~~l~~eL~~~k~el~~yk~ 46 (128)
T PF06295_consen 28 AKLEQELEQAKQELEQYKQ 46 (128)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544
No 29
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=28.45 E-value=90 Score=26.56 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=32.0
Q ss_pred chHHHHHHHHHHHhhhccCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 63 QREDAVNSLAYEAEMRLRDP--VYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 63 qR~dA~~SLvYEA~aR~rDP--VyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
||..+.+-==|-++||++-= -..-=--=..|++||++|+.|+..++-|+-.|+.
T Consensus 54 QrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 54 QRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777778888886510 0000001134667777777777777777766553
No 30
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=28.40 E-value=77 Score=25.93 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHhhhhccc
Q 027472 92 FLQHRLRQLQMDLSCAK--------SELSKYQNLGH 119 (223)
Q Consensus 92 ~Lq~QL~~lq~eLa~aq--------~eLa~y~~~~~ 119 (223)
+++..|.+|+.||..+| .||.+|+.+=.
T Consensus 4 QmElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~ 39 (111)
T PF12001_consen 4 QMELRIKDLESELSKMKTSQEDSNKTELEKYKQLYL 39 (111)
T ss_pred HHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHH
Confidence 45556666666666655 78888887644
No 31
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=28.16 E-value=44 Score=30.92 Aligned_cols=33 Identities=15% Similarity=0.498 Sum_probs=26.6
Q ss_pred CCCCCCCCchhHHHHHHhhchhhHHHHHhhcCCc
Q 027472 29 APYFPPDQPQKFANVHKVFGASNVTKLLNELQPS 62 (223)
Q Consensus 29 APYFPadq~~~F~~vhkvFG~sNV~kmL~~lpp~ 62 (223)
-||.|.+ ++.-..+-+.||.++|-.++..+|.+
T Consensus 2 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~ 34 (447)
T PRK00451 2 MPYIPHT-EEDIREMLDAIGVKSIDELFADIPEE 34 (447)
T ss_pred CCCCCCC-HHHHHHHHHHhCCCCHHHHHHhCCHH
Confidence 3899986 88888999999999997777666543
No 32
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.99 E-value=1.1e+02 Score=21.36 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
|..|+.++++++.+....+.++...
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666666666666655
No 33
>PHA02047 phage lambda Rz1-like protein
Probab=27.71 E-value=1.2e+02 Score=24.65 Aligned_cols=33 Identities=9% Similarity=0.159 Sum_probs=22.7
Q ss_pred cchHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhc
Q 027472 85 GCVGVISFL------QHRLRQLQMDLSCAKSELSKYQNL 117 (223)
Q Consensus 85 GCvGiI~~L------q~QL~~lq~eLa~aq~eLa~y~~~ 117 (223)
|.+|.+... ++..+++.++|+.++.++..|+..
T Consensus 18 ~~y~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~ 56 (101)
T PHA02047 18 ASYGFVQSYRALGIAHEEAKRQTARLEALEVRYATLQRH 56 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555533 447778888888888888887754
No 34
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=26.06 E-value=1.3e+02 Score=23.82 Aligned_cols=17 Identities=6% Similarity=-0.123 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027472 90 ISFLQHRLRQLQMDLSC 106 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~ 106 (223)
+..+++|+..++.+++.
T Consensus 29 ~~~l~~q~~~~~~e~~~ 45 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAK 45 (105)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555544444443
No 35
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=25.45 E-value=1.5e+02 Score=23.25 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 027472 91 SFLQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 91 ~~Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
..|+.+++.++.++...+..+..|
T Consensus 9 ~~l~~~i~~l~~~~~~l~~~~~e~ 32 (129)
T cd00584 9 QVLQQEIEELQQELARLNEAIAEY 32 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544444444444
No 36
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.29 E-value=1.7e+02 Score=20.42 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027472 89 VISFLQHRLRQLQMDLSCAKSELSKYQ 115 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~eLa~y~ 115 (223)
.+..+++++..++.+++..+.+.....
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~ 44 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELK 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888777776554
No 37
>PF14282 FlxA: FlxA-like protein
Probab=25.23 E-value=1.1e+02 Score=23.99 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027472 89 VISFLQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
.+..|+.||..|+++|..++.+...-
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777666543
No 38
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=24.87 E-value=1.8e+02 Score=18.12 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 027472 93 LQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 93 Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
.+..|.+-++||+.++.+++.+
T Consensus 3 Yqakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4667788888888888877654
No 39
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=24.76 E-value=1.1e+02 Score=27.58 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027472 88 GVISFLQHRLRQLQMDLSCAKSELSK 113 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq~eLa~ 113 (223)
..+..|++||+.++.|+..+|.+++.
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~ 79 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQE 79 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 35678899999999999988877753
No 40
>PLN02867 Probable galacturonosyltransferase
Probab=24.35 E-value=4.6e+02 Score=26.83 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 027472 63 QREDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQNLGHAGLIAAA 126 (223)
Q Consensus 63 qR~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~~~~~~~~~~ 126 (223)
++.++|+-+++|+.- --|-|.-++.+|+..+..+++++..++.+-..+.++++.......
T Consensus 117 ~~~~~~~~~~~~~~~----~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~PK~l 176 (535)
T PLN02867 117 GSTESFNDLVKEMTS----NRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPKSL 176 (535)
T ss_pred hhhhHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 688999999999876 446699999999999999999999999998888888877665544
No 41
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=23.83 E-value=2.9e+02 Score=29.03 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=50.7
Q ss_pred chHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 027472 63 QREDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQNLGHAGLIAAA 126 (223)
Q Consensus 63 qR~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~~~~~~~~~~ 126 (223)
++-.+|.-++++|. +=-|.|--++.+|...|..+++|+..++.+-+.+.++++.......
T Consensus 254 ~k~~~M~~~l~~ak----~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~l 313 (657)
T PLN02910 254 DQAKAMGHVLSIAK----DQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPL 313 (657)
T ss_pred HHHHHHHHHHHHHH----hcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 56788888888775 5567899999999999999999999999999888888877665544
No 42
>PRK11677 hypothetical protein; Provisional
Probab=23.83 E-value=91 Score=26.07 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 027472 96 RLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 96 QL~~lq~eLa~aq~eLa~y~~ 116 (223)
+...++.||..++.+|..|+.
T Consensus 30 ~q~~le~eLe~~k~ele~Ykq 50 (134)
T PRK11677 30 QQQALQYELEKNKAELEEYRQ 50 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555544
No 43
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.34 E-value=1.1e+02 Score=29.19 Aligned_cols=28 Identities=14% Similarity=0.351 Sum_probs=18.0
Q ss_pred cCCCCCCCCCchhHHHHHHhhchhhHHH
Q 027472 27 VFAPYFPPDQPQKFANVHKVFGASNVTK 54 (223)
Q Consensus 27 ilAPYFPadq~~~F~~vhkvFG~sNV~k 54 (223)
.|.|.++....++-..+.++||.+..-+
T Consensus 140 ~f~~f~~~~~~er~~il~~l~~~~~~~~ 167 (562)
T PHA02562 140 GYVPFMQLSAPARRKLVEDLLDISVLSE 167 (562)
T ss_pred chhhHhcCChHhHHHHHHHHhCCHHHHH
Confidence 4556556555667777778888775444
No 44
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=23.15 E-value=29 Score=27.38 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.5
Q ss_pred HHHHhhhccCCCCcchHHH
Q 027472 72 AYEAEMRLRDPVYGCVGVI 90 (223)
Q Consensus 72 vYEA~aR~rDPVyGCvGiI 90 (223)
-.|-..|..|||-|++--.
T Consensus 58 ~~~~~~W~pDPvTGyyrPe 76 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPE 76 (93)
T ss_pred cccccccccCCCCccccCC
Confidence 5677899999999997543
No 45
>PRK01203 prefoldin subunit alpha; Provisional
Probab=22.94 E-value=1.7e+02 Score=24.53 Aligned_cols=25 Identities=8% Similarity=0.337 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
+..|++|++.++.||...+..+..|
T Consensus 9 ~~~~~~q~e~l~~ql~~L~~a~se~ 33 (130)
T PRK01203 9 LNYIESLISSVDSQIDSLNKTLSEV 33 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666655555544
No 46
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=22.39 E-value=1.5e+02 Score=21.44 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 027472 88 GVISFLQHRLRQLQMDLSCAKSELSKYQNLG 118 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~~ 118 (223)
.-+..+++++.+++.|-...+.|+.....++
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~ 61 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELSRHE 61 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 3456677777777777777777777655544
No 47
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.95 E-value=1.7e+02 Score=22.09 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027472 87 VGVISFLQHRLRQLQMDLSCAKSELSKYQ 115 (223)
Q Consensus 87 vGiI~~Lq~QL~~lq~eLa~aq~eLa~y~ 115 (223)
--.+..|+.+|+.++.++...+.++....
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 97 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALE 97 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33778888888888888888887776554
No 48
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=21.84 E-value=99 Score=20.89 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCCCCchhHHHHHHhhchhhHHHHHhhcCCcc
Q 027472 32 FPPDQPQKFANVHKVFGASNVTKLLNELQPSQ 63 (223)
Q Consensus 32 FPadq~~~F~~vhkvFG~sNV~kmL~~lpp~q 63 (223)
||+++.+--..+.+-=-...|+..|+.||..+
T Consensus 6 yPa~k~~Lv~~A~~~gA~~~vl~~L~~lP~~~ 37 (44)
T PF11387_consen 6 YPADKDELVRHARRNGAPDDVLDALERLPDRE 37 (44)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHCCccC
Confidence 78887766666666555667899999998543
No 49
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=21.83 E-value=2.4e+02 Score=20.12 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 89 VISFLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
+....+.+|......|...+.+|..|+.
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666654
No 50
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.02 E-value=1.4e+02 Score=22.77 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 027472 91 SFLQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 91 ~~Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
..|+++|+.++.++...+..+..|
T Consensus 9 ~~l~~~i~~l~~~~~~l~~~~~e~ 32 (129)
T cd00890 9 QQLQQQLEALQQQLQKLEAQLTEY 32 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 51
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.97 E-value=1.3e+02 Score=23.18 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
|..|+.+-.+|+.+|..+++||..-..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777888888877777765444
No 52
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.71 E-value=2e+02 Score=21.03 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa 112 (223)
|.+|+..+..++.++..++.|-+
T Consensus 19 vdqLs~dv~~lr~~v~~ak~EAa 41 (56)
T PF04728_consen 19 VDQLSSDVNALRADVQAAKEEAA 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666655555544
No 53
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.64 E-value=1.5e+02 Score=27.53 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=37.4
Q ss_pred hHHHHHhhcCCcchHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027472 51 NVTKLLNELQPSQREDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSK 113 (223)
Q Consensus 51 NV~kmL~~lpp~qR~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~ 113 (223)
+++.+|+..... +-+.+++=+-|..-+.. --++.|++|+..+.+.|..++.+|..
T Consensus 52 ~~i~~le~~~~~-~l~~ak~eLqe~eek~e-------~~l~~Lq~ql~~l~akI~k~~~el~~ 106 (258)
T PF15397_consen 52 TAIDILEYSNHK-QLQQAKAELQEWEEKEE-------SKLSKLQQQLEQLDAKIQKTQEELNF 106 (258)
T ss_pred HHHHHHHccChH-HHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566554433 33444555555555543 46899999999999999999999864
No 54
>cd04772 HTH_TioE_rpt1 First Helix-Turn-Helix DNA binding domain of the regulatory protein TioE. Putative helix-turn-helix (HTH) regulatory protein, TioE, and related proteins. TioE is part of the thiocoraline gene cluster, which is involved in the biosynthesis of the antitumor thiocoraline from the marine actinomycete, Micromonospora. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Proteins in this family are unique within the MerR superfamily in that they are composed of just two adjacent MerR-like N-terminal domains; this CD contains the N-terminal or first repeat (rpt1) of these tandem MerR-like domain proteins.
Probab=20.38 E-value=2.3e+02 Score=21.58 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 88 GVISFLQHRLRQLQMDLSCAKSEL 111 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq~eL 111 (223)
.....|..+++.++.++...+.||
T Consensus 76 ~~~~ll~~~~~~l~~~i~~L~~~~ 99 (99)
T cd04772 76 SALALVDAAHALLQRYRQQLDQEL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 667888888888888888777664
No 55
>smart00150 SPEC Spectrin repeats.
Probab=20.37 E-value=2.5e+02 Score=19.30 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=33.0
Q ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 027472 80 RDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQNLGH 119 (223)
Q Consensus 80 rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~~~ 119 (223)
.+++.+.+-.|..+..+...++.++...+..+......+.
T Consensus 23 ~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~ 62 (101)
T smart00150 23 SEDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGE 62 (101)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3567789999999999999999999988888887766654
No 56
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=20.24 E-value=2e+02 Score=20.12 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 027472 89 VISFLQHRLRQLQMDLSCAKSELSK 113 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~eLa~ 113 (223)
-++.|..|+.+|++-|+.+.+.|.+
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~ 27 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEM 27 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3678888888888888888877764
Done!