Query 027472
Match_columns 223
No_of_seqs 126 out of 302
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 17:31:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 79.6 2.8 9.5E-05 26.5 4.0 29 88-116 2-30 (33)
2 3oj5_A Ferritin family protein 75.0 2.3 7.9E-05 34.1 3.5 32 87-118 119-150 (189)
3 2er8_A Regulatory protein Leu3 67.0 11 0.00038 25.5 5.1 21 88-108 49-69 (72)
4 1yke_B RNA polymerase II holoe 63.8 3.2 0.00011 33.8 2.1 81 12-110 20-114 (151)
5 2nn3_C Caspase-1; cysteine pro 63.1 7.8 0.00027 34.5 4.6 74 80-154 224-310 (310)
6 3uno_A Probable bacterioferrit 59.6 15 0.00051 30.1 5.4 72 78-154 115-188 (189)
7 3gpv_A Transcriptional regulat 55.4 11 0.00039 29.5 3.9 25 92-116 106-130 (148)
8 2k5p_A THis protein, thiamine- 54.9 6.7 0.00023 28.2 2.2 24 132-155 55-78 (78)
9 3r4h_A Coiled coil helix CC-TE 49.0 26 0.0009 22.2 4.0 30 88-117 2-31 (34)
10 2kl0_A Putative thiamin biosyn 48.4 8 0.00027 27.4 1.7 20 135-154 54-73 (73)
11 2k27_A Paired box protein PAX- 47.3 17 0.00057 27.7 3.6 22 133-154 138-159 (159)
12 1zme_C Proline utilization tra 45.3 23 0.00077 23.6 3.6 25 88-112 44-68 (70)
13 3gp4_A Transcriptional regulat 44.5 14 0.00049 28.8 2.8 28 90-117 90-117 (142)
14 2l32_A Small archaeal modifier 44.1 6 0.0002 28.2 0.5 21 134-154 54-74 (74)
15 2nov_A DNA topoisomerase 4 sub 43.9 10 0.00034 36.4 2.2 31 82-112 423-454 (496)
16 3nmd_A CGMP dependent protein 42.2 36 0.0012 24.9 4.5 29 88-116 40-68 (72)
17 1zxa_A CGMP-dependent protein 41.4 35 0.0012 24.6 4.2 30 89-118 26-55 (67)
18 1am9_A Srebp-1A, protein (ster 40.6 39 0.0013 24.3 4.5 31 87-117 49-79 (82)
19 2wg5_A General control protein 39.4 32 0.0011 26.1 4.0 37 90-126 9-45 (109)
20 2yy0_A C-MYC-binding protein; 37.9 34 0.0012 23.3 3.6 25 90-114 28-52 (53)
21 2zvf_A Alanyl-tRNA synthetase; 37.2 94 0.0032 24.0 6.6 47 69-115 13-59 (171)
22 4e61_A Protein BIM1; EB1-like 35.7 48 0.0016 25.9 4.5 32 85-116 1-32 (106)
23 3kin_B Kinesin heavy chain; mo 35.3 33 0.0011 26.4 3.6 85 31-115 21-116 (117)
24 2xdj_A Uncharacterized protein 34.5 47 0.0016 24.5 4.1 24 89-112 21-44 (83)
25 2l5g_B Putative uncharacterize 32.2 59 0.002 21.7 3.9 25 92-116 6-30 (42)
26 2ke4_A CDC42-interacting prote 31.7 54 0.0019 24.8 4.2 39 72-111 47-85 (98)
27 3gu3_A Methyltransferase; alph 31.1 20 0.0007 29.4 1.8 54 64-120 205-261 (284)
28 2xzd_B Caspase-3; hydrolase-pr 30.9 98 0.0033 23.8 5.6 34 79-113 31-70 (118)
29 3myf_A Sensor protein; HPT, hi 29.1 1.3E+02 0.0045 22.5 6.0 65 38-110 51-115 (119)
30 1gk4_A Vimentin; intermediate 28.6 60 0.002 23.4 3.8 54 64-117 9-76 (84)
31 2xdj_A Uncharacterized protein 28.6 66 0.0022 23.7 4.0 24 89-112 28-51 (83)
32 1wlx_A Alpha-actinin 4; three- 28.5 1.7E+02 0.0058 23.2 6.7 57 62-118 18-75 (129)
33 1nkp_B MAX protein, MYC proto- 28.1 83 0.0028 22.2 4.4 28 87-114 46-73 (83)
34 3ra3_B P2F; coiled coil domain 26.0 71 0.0024 19.4 3.1 25 90-114 2-26 (28)
35 3hh0_A Transcriptional regulat 25.6 37 0.0013 26.6 2.3 30 91-120 90-119 (146)
36 1rtm_1 Mannose-binding protein 25.6 66 0.0023 23.9 3.7 20 90-109 6-25 (149)
37 2wt7_B Transcription factor MA 25.3 86 0.0029 23.7 4.2 53 63-115 28-82 (90)
38 1hlo_A Protein (transcription 24.7 64 0.0022 22.8 3.3 24 87-110 56-79 (80)
39 1uuj_A Platelet-activating fac 24.6 31 0.0011 26.1 1.6 24 90-113 60-83 (88)
40 3hu3_A Transitional endoplasmi 24.5 16 0.00054 33.9 0.0 10 145-154 480-489 (489)
41 2ar0_A M.ecoki, type I restric 24.2 33 0.0011 32.1 2.1 39 77-115 468-506 (541)
42 1jcd_A Major outer membrane li 21.8 1.2E+02 0.0041 20.7 4.0 21 91-111 14-34 (52)
43 2dgc_A Protein (GCN4); basic d 21.6 1.5E+02 0.0051 20.5 4.6 29 88-116 30-58 (63)
44 1dh3_A Transcription factor CR 21.6 1.5E+02 0.0051 19.9 4.5 28 89-116 23-50 (55)
45 3etw_A Adhesin A; antiparallel 21.3 90 0.0031 24.7 3.8 31 87-117 74-104 (119)
46 2pbi_A Regulator of G-protein 21.0 80 0.0027 29.3 4.0 68 38-105 144-236 (424)
47 1yhn_B RILP, RAB interacting l 20.6 1.3E+02 0.0046 21.6 4.2 26 93-118 8-33 (65)
48 2y9y_A Imitation switch protei 20.5 4.2E+02 0.015 24.5 8.7 76 38-117 132-213 (374)
49 2jn6_A Protein CGL2762, transp 20.5 15 0.00052 25.8 -0.8 23 90-112 61-83 (97)
50 3twe_A Alpha4H; unknown functi 20.4 1.4E+02 0.0047 18.0 3.6 22 91-112 4-25 (27)
51 3pbf_A Pulmonary surfactant-as 20.3 74 0.0025 23.3 3.0 24 89-112 3-26 (148)
52 2k48_A Nucleoprotein; viral pr 20.1 1.3E+02 0.0043 23.7 4.3 26 87-112 34-59 (107)
53 1gk6_A Vimentin; intermediate 20.1 1.2E+02 0.0041 20.6 3.8 20 93-112 5-24 (59)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=79.63 E-value=2.8 Score=26.52 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 88 GVISFLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
|.|-.|+++|..++.|++..+-||+...+
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 78899999999999999999999987654
No 2
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=74.97 E-value=2.3 Score=34.13 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 027472 87 VGVISFLQHRLRQLQMDLSCAKSELSKYQNLG 118 (223)
Q Consensus 87 vGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~~ 118 (223)
.++...|++-|...+.++...+..|..++..+
T Consensus 119 ~~t~~~l~~~l~eqe~~~~~l~~~l~~l~~~g 150 (189)
T 3oj5_A 119 FLGEQFMQWFLQEQIEEVALMATLVRVADRAG 150 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46667777888887788888888888777755
No 3
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=67.05 E-value=11 Score=25.47 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027472 88 GVISFLQHRLRQLQMDLSCAK 108 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq 108 (223)
+.|..|+.+|..|+..|..+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 556677777777777665443
No 4
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=63.78 E-value=3.2 Score=33.79 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=43.9
Q ss_pred ChhhhhhhcCCCCCCcCCCCCCC--------CCchhHHHHHHhhc------hhhHHHHHhhcCCcchHHHHHHHHHHHhh
Q 027472 12 CAACKLLRRKCQPECVFAPYFPP--------DQPQKFANVHKVFG------ASNVTKLLNELQPSQREDAVNSLAYEAEM 77 (223)
Q Consensus 12 CAACK~lRRkC~~~CilAPYFPa--------dq~~~F~~vhkvFG------~sNV~kmL~~lpp~qR~dA~~SLvYEA~a 77 (223)
|++=.++.|.- +-+.|.|--|. ..+..|...-+-+. ...|-.++..||.....+.-
T Consensus 20 ~nsig~Lq~~a-pp~~~~~~~~~~~~~~~~~~~~~~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seee--------- 89 (151)
T 1yke_B 20 CATLNYIDKNH-GFERLTVNEPQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEE--------- 89 (151)
T ss_dssp TTTHHHHHHTT-GGGGCCC------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHH---------
T ss_pred HHHHHHHhcCC-CcccCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH---------
Confidence 44445555553 34666653331 34567877666554 66777888888855421111
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 78 RLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSE 110 (223)
Q Consensus 78 R~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~e 110 (223)
-.-.|..|+.++..+..||..+-.+
T Consensus 90 --------Q~~ri~~Le~E~~~~~~el~~~v~e 114 (151)
T 1yke_B 90 --------QLRKIDMLQKKLVEVEDEKIEAIKK 114 (151)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0224566777766666666554443
No 5
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=63.07 E-value=7.8 Score=34.49 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=25.8
Q ss_pred cCCCCcchHHHHHHHHHHHH------HHHHHHHHHHHHHh-hhhc-----c-cccccccccccccccccccccccCCCCC
Q 027472 80 RDPVYGCVGVISFLQHRLRQ------LQMDLSCAKSELSK-YQNL-----G-HAGLIAAAHHHHHHQNMGMNLIGGAGGG 146 (223)
Q Consensus 80 rDPVyGCvGiI~~Lq~QL~~------lq~eLa~aq~eLa~-y~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 146 (223)
|++..|+. .|..|-+.|.+ +..=|..++.+++. +... . +........................+||
T Consensus 224 R~~~~GSw-FIqaL~~~l~~~~~~~dl~~ilt~Vn~~V~~~~~s~~p~~~~~~~~kQ~P~~~stLtk~lyF~~~~~~~~~ 302 (310)
T 2nn3_C 224 RNTTRGSW-FMQALCEELRYAGTERDILTLLTFVCQKVALDFESNAPDSAMMHQQKQVPCITSMLTRLLVFGKKQSHGGG 302 (310)
T ss_dssp SSSEEEEH-HHHHHHHHHHTTTTTSCHHHHHHHHHHHHHHHTTSSSCCSSCSCCSCCCCEEEECCSSBCCC---------
T ss_pred cCCCCCCH-HHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhcccccccccCCceEcceeeeeccceEEeCCCCCCCCc
Confidence 56777766 67777777765 44445666667663 2111 0 0001101111111222333445678888
Q ss_pred CCCCCCCC
Q 027472 147 GRDHHFHH 154 (223)
Q Consensus 147 ~~~~~~~h 154 (223)
+.+|||||
T Consensus 303 ~~~~~~~~ 310 (310)
T 2nn3_C 303 LEHHHHHH 310 (310)
T ss_dssp --------
T ss_pred ccccccCC
Confidence 88777776
No 6
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=59.60 E-value=15 Score=30.11 Aligned_cols=72 Identities=17% Similarity=0.107 Sum_probs=31.4
Q ss_pred hccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc--cccccccccccccCCCCCCCCCCCCC
Q 027472 78 RLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQNLGHAGLIAAAHH--HHHHQNMGMNLIGGAGGGGRDHHFHH 154 (223)
Q Consensus 78 R~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~h 154 (223)
...||+ .-..|+|-|..-..++..+...|...+..+.......... ..............|||.+..|||||
T Consensus 115 ~~~D~~-----t~~fLe~fL~EQve~~~~l~~~l~~l~~~g~~~~~l~~yL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (189)
T 3uno_A 115 DEGDFL-----GEQFMQWFLQEQIEEVALMATLVRVADRAGANLFELENFVAREVDVAPAASGAPHAAGGRLGSHHHHH 188 (189)
T ss_dssp HTTCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSCCCCCCCCCCCCTTCCCC------
T ss_pred HcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCCCcccccccccccccC
Confidence 346775 3444556665555566666766766666553211111111 01111222334455666666666555
No 7
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=55.41 E-value=11 Score=29.47 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 92 FLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 92 ~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
.|+++|..++..+...+..|..|..
T Consensus 106 ~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 106 NVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 8
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=54.90 E-value=6.7 Score=28.17 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=17.4
Q ss_pred ccccccccccCCCCCCCCCCCCCC
Q 027472 132 HQNMGMNLIGGAGGGGRDHHFHHH 155 (223)
Q Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~h~ 155 (223)
...........+|||...+||||+
T Consensus 55 ~dGD~IEIv~~VgGG~~~~~~~~~ 78 (78)
T 2k5p_A 55 KDGDAVEFLYFMGGGKLEHHHHHH 78 (78)
T ss_dssp CSSBCEEECCCCCCSCCCCCCCCC
T ss_pred CCCCEEEEEeeecCCCchhccccC
Confidence 344555667888999888888774
No 9
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=49.05 E-value=26 Score=22.17 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027472 88 GVISFLQHRLRQLQMDLSCAKSELSKYQNL 117 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~ 117 (223)
|.+-.+++++..++.||+..+-||+.+.+.
T Consensus 2 gelaaikqelaaikkelaaikfelaaikqg 31 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIKQG 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456677888999999999999999877654
No 10
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=48.39 E-value=8 Score=27.37 Aligned_cols=20 Identities=30% Similarity=0.574 Sum_probs=12.7
Q ss_pred cccccccCCCCCCCCCCCCC
Q 027472 135 MGMNLIGGAGGGGRDHHFHH 154 (223)
Q Consensus 135 ~~~~~~~~~g~~~~~~~~~h 154 (223)
........+|||..++||||
T Consensus 54 D~veIv~~VgGG~~~~~~~~ 73 (73)
T 2kl0_A 54 DEIEILTPRQGGLEHHHHHH 73 (73)
T ss_dssp CEEEEECCCCCCCSCSSCCC
T ss_pred CEEEEEccccCCccccccCC
Confidence 34455667777777666665
No 11
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=47.26 E-value=17 Score=27.68 Aligned_cols=22 Identities=45% Similarity=0.854 Sum_probs=15.4
Q ss_pred cccccccccCCCCCCCCCCCCC
Q 027472 133 QNMGMNLIGGAGGGGRDHHFHH 154 (223)
Q Consensus 133 ~~~~~~~~~~~g~~~~~~~~~h 154 (223)
.........++-||+++|||||
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~ 159 (159)
T 2k27_A 138 QPFNLPMDSGAPGGGSHHHHHH 159 (159)
T ss_dssp CCSCCCCCCCCCCCCCCCCCCC
T ss_pred CCccCcccCCCCCCCcccccCC
Confidence 3444555678888888888776
No 12
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=45.30 E-value=23 Score=23.60 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 88 GVISFLQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq~eLa 112 (223)
+.|..|+.+|..|+.+|..++..|+
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999998887764
No 13
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.45 E-value=14 Score=28.84 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSKYQNL 117 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~y~~~ 117 (223)
+..|+++|..++..+..+...|..|...
T Consensus 90 ~~~l~~~i~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 90 RIELKNRIDVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566666666554
No 14
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=44.12 E-value=6 Score=28.17 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=8.8
Q ss_pred ccccccccCCCCCCCCCCCCC
Q 027472 134 NMGMNLIGGAGGGGRDHHFHH 154 (223)
Q Consensus 134 ~~~~~~~~~~g~~~~~~~~~h 154 (223)
........-+|||+.++||||
T Consensus 54 GD~VeIv~~V~G~~~~~~~~~ 74 (74)
T 2l32_A 54 VDRVKVLRLIKGGLEHHHHHH 74 (74)
T ss_dssp CCCEEECSSCSCC--------
T ss_pred CCEEEEEEeecccccccccCC
Confidence 444555677899998887776
No 15
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=43.89 E-value=10 Score=36.45 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=17.1
Q ss_pred CCCcchH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 82 PVYGCVG-VISFLQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 82 PVyGCvG-iI~~Lq~QL~~lq~eLa~aq~eLa 112 (223)
|++--.+ -+.+|+.++.+++.+++..+.-|+
T Consensus 423 ~L~rLt~~e~~kl~~E~~~l~~~i~~l~~iL~ 454 (496)
T 2nov_A 423 QLYRLTNTDVVVLQEEEAELREKIAMLAAIIG 454 (496)
T ss_dssp BGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3333333 355666666666666666655554
No 16
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=42.18 E-value=36 Score=24.94 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 88 GVISFLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
..|..|+.+|.....++...+.+|-+|+.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45888999999999999999999988875
No 17
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=41.37 E-value=35 Score=24.63 Aligned_cols=30 Identities=27% Similarity=0.285 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 027472 89 VISFLQHRLRQLQMDLSCAKSELSKYQNLG 118 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~eLa~y~~~~ 118 (223)
.|..|+..|+.-..++..++.+|-+|+..-
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478889999999999999999999998654
No 18
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=40.65 E-value=39 Score=24.26 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027472 87 VGVISFLQHRLRQLQMDLSCAKSELSKYQNL 117 (223)
Q Consensus 87 vGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~ 117 (223)
+-.|..|+.++..++.|+..++.++.....+
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~~ 79 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5679999999999999999999998876544
No 19
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=39.40 E-value=32 Score=26.06 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSKYQNLGHAGLIAAA 126 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~y~~~~~~~~~~~~ 126 (223)
+.+|+.++..++.|+...+.||...+.++-.......
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e 45 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSD 45 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 4689999999999999999999999998866555433
No 20
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.94 E-value=34 Score=23.28 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
+..|+.++..|+.++...+++|..|
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666666666666666666543
No 21
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=37.25 E-value=94 Score=24.02 Aligned_cols=47 Identities=15% Similarity=0.067 Sum_probs=32.0
Q ss_pred HHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027472 69 NSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQ 115 (223)
Q Consensus 69 ~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~ 115 (223)
..++.|......-|..--.-.|..|+.++..++.|+..++.+++.+.
T Consensus 13 ~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 13 ERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544456667777888888888888888888877764
No 22
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=35.68 E-value=48 Score=25.87 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=24.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 85 GCVGVISFLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 85 GCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
|..|.+..|+.+|.+.+.++...+.++..+..
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk~ 32 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYKG 32 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888887777765543
No 23
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=35.29 E-value=33 Score=26.35 Aligned_cols=85 Identities=11% Similarity=0.143 Sum_probs=48.6
Q ss_pred CCCCCCchhHHHHHHhhchhhHHHHHhhcCCc--chHHHHHHHHHHHhhhcc------CCCCcchHH---HHHHHHHHHH
Q 027472 31 YFPPDQPQKFANVHKVFGASNVTKLLNELQPS--QREDAVNSLAYEAEMRLR------DPVYGCVGV---ISFLQHRLRQ 99 (223)
Q Consensus 31 YFPadq~~~F~~vhkvFG~sNV~kmL~~lpp~--qR~dA~~SLvYEA~aR~r------DPVyGCvGi---I~~Lq~QL~~ 99 (223)
+.|..+..-.....--||-..-+-|+-.+.|. .-++.+.+|-|-+.++.. +-.....-+ +.....+++.
T Consensus 21 hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~~ 100 (117)
T 3kin_B 21 HVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKA 100 (117)
T ss_dssp SCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHHH
Confidence 45544444444444445544444455556665 457999999999887642 111111222 3334445566
Q ss_pred HHHHHHHHHHHHHhhh
Q 027472 100 LQMDLSCAKSELSKYQ 115 (223)
Q Consensus 100 lq~eLa~aq~eLa~y~ 115 (223)
++.++...+.||.++|
T Consensus 101 L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 101 LKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6777777788888776
No 24
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.48 E-value=47 Score=24.54 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 89 VISFLQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~eLa 112 (223)
.++.|++||..++.|+..++.+++
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE 44 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQ 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Confidence 467788888888888877776664
No 25
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.24 E-value=59 Score=21.71 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 92 FLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 92 ~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
.|-++|..+-.|++.++.+|..++.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667888888888888888877764
No 26
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=31.74 E-value=54 Score=24.79 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=17.6
Q ss_pred HHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 72 AYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSEL 111 (223)
Q Consensus 72 vYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eL 111 (223)
+|+.+-=.-||-. +-+.|...-..|+.|+++|...+.-|
T Consensus 47 vY~~nP~~GD~~s-~~~~L~e~~~kid~L~~el~K~q~~L 85 (98)
T 2ke4_A 47 VYEKTPQMGDPAS-LEPQIAETLSNIERLKLEVQKYEAWL 85 (98)
T ss_dssp HHHHCGGGCCGGG-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554444444432 24444444445555555544444433
No 27
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A
Probab=31.09 E-value=20 Score=29.36 Aligned_cols=54 Identities=9% Similarity=-0.060 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhhhccCCCCcchHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027472 64 REDAVNSLAYEAEMRLRDPVYGCVGVISFL---QHRLRQLQMDLSCAKSELSKYQNLGHA 120 (223)
Q Consensus 64 R~dA~~SLvYEA~aR~rDPVyGCvGiI~~L---q~QL~~lq~eLa~aq~eLa~y~~~~~~ 120 (223)
+......+.-+.-..... +--+.+..| -+..++++..++.++.++..+......
T Consensus 205 ~~~l~~~l~~~G~~~~~~---~~~~~~~~l~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~ 261 (284)
T 3gu3_A 205 KNDLYQSLKEEGIAGDPG---DKQQFVERLIARGLTYDNALAQYEAELRFFKALHLHSSL 261 (284)
T ss_dssp HHHHHHHHHHTTTTCCCC---CHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCCTTCCE
T ss_pred HHHHHHHHHhccccCCcc---cHHHHHHHHHHccccHHHHHHHHHHHHHHHHHhccchhh
Confidence 344555555544433222 333444444 346788888888888888766554433
No 28
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=30.92 E-value=98 Score=23.75 Aligned_cols=34 Identities=21% Similarity=0.201 Sum_probs=22.1
Q ss_pred ccCCCCcchHHHHHHHHHHHH------HHHHHHHHHHHHHh
Q 027472 79 LRDPVYGCVGVISFLQHRLRQ------LQMDLSCAKSELSK 113 (223)
Q Consensus 79 ~rDPVyGCvGiI~~Lq~QL~~------lq~eLa~aq~eLa~ 113 (223)
-|||..|+. -|..|-+.|++ +..=|..+..+++.
T Consensus 31 ~R~~~~GSw-FIQ~Lc~vl~~~~~~~dl~~ilT~Vn~~Va~ 70 (118)
T 2xzd_B 31 WRNSKDGSW-FIQSLCAMLKQYADKLEFMHILTRVNRKVAT 70 (118)
T ss_dssp CEETTTEEH-HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred eEeCCCCCc-cHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence 378888887 77777777765 34444555555554
No 29
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=29.09 E-value=1.3e+02 Score=22.47 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=39.0
Q ss_pred hhHHHHHHhhchhhHHHHHhhcCCcchHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 38 QKFANVHKVFGASNVTKLLNELQPSQREDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSE 110 (223)
Q Consensus 38 ~~F~~vhkvFG~sNV~kmL~~lpp~qR~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~e 110 (223)
.-+..+||+-|.+..+..- .. ..-+...|..+|..+|+-..-..+..|..+|..+..++....++
T Consensus 51 ~l~~~aHkLkGaa~~~Ga~-----~L---~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 51 TMLSTIHKLHGASCYCGVP-----TT---QRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHHHHTTTTCH-----HH---HHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHH-----HH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455688888877654321 11 12233457777888887666667777777776665555544433
No 30
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=28.62 E-value=60 Score=23.43 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhc
Q 027472 64 REDAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLS--------------CAKSELSKYQNL 117 (223)
Q Consensus 64 R~dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa--------------~aq~eLa~y~~~ 117 (223)
.......-+-|+..|..-.+-..-..|..|+.+|.+++.+++ ....||+.|+.+
T Consensus 9 ~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 9 TNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 31
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.60 E-value=66 Score=23.72 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 89 VISFLQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~eLa 112 (223)
-|..|+.+|..|.-++....-+|.
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ 51 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLN 51 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345555555555555544444443
No 32
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=28.55 E-value=1.7e+02 Score=23.23 Aligned_cols=57 Identities=19% Similarity=0.112 Sum_probs=50.5
Q ss_pred cchHHHHHHHHHHHhhhccCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 027472 62 SQREDAVNSLAYEAEMRLRDPVY-GCVGVISFLQHRLRQLQMDLSCAKSELSKYQNLG 118 (223)
Q Consensus 62 ~qR~dA~~SLvYEA~aR~rDPVy-GCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~~ 118 (223)
-+|...+++=+=.|.-=+.|||. ..+--|..|+..-++.++.|..++.++.......
T Consensus 18 AKrAa~fNnW~e~A~EdL~D~~~v~sleEI~~L~~~He~F~~~L~~a~~e~~~i~~i~ 75 (129)
T 1wlx_A 18 AKRAAPFNNWMESAMEDLQDMFIVHTIEEIEGLISAHDQFKSTLPDADREREAILAIH 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhHHHHhccchhhccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 47888899999999999999999 7899999999999999999999999998775544
No 33
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.06 E-value=83 Score=22.23 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027472 87 VGVISFLQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 87 vGiI~~Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
+-.|..|+.++..++.++...+.+....
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888887777777666543
No 34
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.03 E-value=71 Score=19.42 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSKY 114 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~y 114 (223)
|..|+++-..++.|++...-||+..
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888888888888888887753
No 35
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=25.62 E-value=37 Score=26.58 Aligned_cols=30 Identities=17% Similarity=0.130 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 027472 91 SFLQHRLRQLQMDLSCAKSELSKYQNLGHA 120 (223)
Q Consensus 91 ~~Lq~QL~~lq~eLa~aq~eLa~y~~~~~~ 120 (223)
..|..++..++.-+..++..|..|......
T Consensus 90 ~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~ 119 (146)
T 3hh0_A 90 EVLLAEQERIAKVLSHMDEMTKKFQKEERV 119 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 345555666666666666666666655443
No 36
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=25.62 E-value=66 Score=23.85 Aligned_cols=20 Identities=10% Similarity=0.282 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027472 90 ISFLQHRLRQLQMDLSCAKS 109 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~ 109 (223)
|..|+.++..++.+|...+.
T Consensus 6 l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555444
No 37
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=25.30 E-value=86 Score=23.65 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHhhhcc--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027472 63 QREDAVNSLAYEAEMRLR--DPVYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQ 115 (223)
Q Consensus 63 qR~dA~~SLvYEA~aR~r--DPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~ 115 (223)
+|....+-=.|-++||.+ +=+..--..+..|+.+++.++.|+..++.|+..|+
T Consensus 28 q~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 28 QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667888888875 22222233444555555555555555555554443
No 38
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=24.66 E-value=64 Score=22.79 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 87 VGVISFLQHRLRQLQMDLSCAKSE 110 (223)
Q Consensus 87 vGiI~~Lq~QL~~lq~eLa~aq~e 110 (223)
+-.|..|+.++..++.++..++.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456888888888888888776654
No 39
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=24.63 E-value=31 Score=26.07 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSK 113 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~ 113 (223)
|-.||.+|..|+.++..+++||..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667999999999999999998863
No 40
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=24.47 E-value=16 Score=33.90 Aligned_cols=10 Identities=60% Similarity=1.208 Sum_probs=0.0
Q ss_pred CCCCCCCCCC
Q 027472 145 GGGRDHHFHH 154 (223)
Q Consensus 145 ~~~~~~~~~h 154 (223)
||+++|||||
T Consensus 480 g~~~~~~~~~ 489 (489)
T 3hu3_A 480 GGRSHHHHHH 489 (489)
T ss_dssp ----------
T ss_pred CCCcccccCC
Confidence 5677777766
No 41
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Probab=24.17 E-value=33 Score=32.09 Aligned_cols=39 Identities=18% Similarity=-0.041 Sum_probs=19.0
Q ss_pred hhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027472 77 MRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQ 115 (223)
Q Consensus 77 aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~ 115 (223)
.|-.||..--.=.+-.....+.+++++|..+..+|..+.
T Consensus 468 ~~y~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 506 (541)
T 2ar0_A 468 SWLKDKDSIDADSLPEPDVLAAEAMGELVQALSELDALM 506 (541)
T ss_dssp CCEECCC-------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCCccccccCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555542111233455566666666776666666554
No 42
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=21.76 E-value=1.2e+02 Score=20.71 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027472 91 SFLQHRLRQLQMDLSCAKSEL 111 (223)
Q Consensus 91 ~~Lq~QL~~lq~eLa~aq~eL 111 (223)
..|..++.+|+.++..++.++
T Consensus 14 ~~L~~kVdqLssdV~al~~~v 34 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSDA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 43
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.60 E-value=1.5e+02 Score=20.46 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 88 GVISFLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
..|..|+.++..|+.+...++.++...+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888876654
No 44
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.58 E-value=1.5e+02 Score=19.94 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027472 89 VISFLQHRLRQLQMDLSCAKSELSKYQN 116 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~eLa~y~~ 116 (223)
.|..|+.++..|+.|...++.++...+.
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888876543
No 45
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=21.27 E-value=90 Score=24.66 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027472 87 VGVISFLQHRLRQLQMDLSCAKSELSKYQNL 117 (223)
Q Consensus 87 vGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~ 117 (223)
-+.|.+++.-+..|+.+++.-+.-|..|-..
T Consensus 74 ~~l~k~Y~~~~keLd~~ik~qekiIdnFE~i 104 (119)
T 3etw_A 74 QELASKYEDALKKLEAEMEQQKAVISDFEKI 104 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666777766666666555443
No 46
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=21.00 E-value=80 Score=29.31 Aligned_cols=68 Identities=9% Similarity=0.154 Sum_probs=46.1
Q ss_pred hhHHHHHHhhchhhHHHHHhh---cCCcchHHHHHHHHHHHh----hhccCCCCcchHH------------------HHH
Q 027472 38 QKFANVHKVFGASNVTKLLNE---LQPSQREDAVNSLAYEAE----MRLRDPVYGCVGV------------------ISF 92 (223)
Q Consensus 38 ~~F~~vhkvFG~sNV~kmL~~---lpp~qR~dA~~SLvYEA~----aR~rDPVyGCvGi------------------I~~ 92 (223)
+.+..++|.|...+-.=+++. +.++++.+-..-+|++.+ +++.-|+.||+-. +..
T Consensus 144 e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~~ 223 (424)
T 2pbi_A 144 ENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTA 223 (424)
T ss_dssp HHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHHH
T ss_pred HHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHHH
Confidence 566677787776666555554 344455556666777665 7889999998743 456
Q ss_pred HHHHHHHHHHHHH
Q 027472 93 LQHRLRQLQMDLS 105 (223)
Q Consensus 93 Lq~QL~~lq~eLa 105 (223)
++.+|++++.+|.
T Consensus 224 ~r~~veqLk~~l~ 236 (424)
T 2pbi_A 224 VRKEIMYYQQALM 236 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777763
No 47
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=20.62 E-value=1.3e+02 Score=21.62 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc
Q 027472 93 LQHRLRQLQMDLSCAKSELSKYQNLG 118 (223)
Q Consensus 93 Lq~QL~~lq~eLa~aq~eLa~y~~~~ 118 (223)
.-++-++|++.+-.++.||+.|+..-
T Consensus 8 iLqERNELKa~vf~lqeEL~yY~~e~ 33 (65)
T 1yhn_B 8 ILQERNELKAKVFLLKEELAYFQREL 33 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33455788889999999999998654
No 48
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=20.53 E-value=4.2e+02 Score=24.47 Aligned_cols=76 Identities=18% Similarity=0.389 Sum_probs=56.2
Q ss_pred hhHHHHHHhhchhhHHHHHhhcCCc-chHHHH--HHHHHHHhhhccCCCCc---chHHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 38 QKFANVHKVFGASNVTKLLNELQPS-QREDAV--NSLAYEAEMRLRDPVYG---CVGVISFLQHRLRQLQMDLSCAKSEL 111 (223)
Q Consensus 38 ~~F~~vhkvFG~sNV~kmL~~lpp~-qR~dA~--~SLvYEA~aR~rDPVyG---CvGiI~~Lq~QL~~lq~eLa~aq~eL 111 (223)
+.|..+...||..++-++-.++.+. .-+++- ....|+=. +=|.| .++.|-..+.+|..++.+...++..+
T Consensus 132 ~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry----~Ei~d~erii~~IEkgE~ki~r~~~~~~~L~~Ki 207 (374)
T 2y9y_A 132 RKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI----ERIEDYEKYLKIIENEEEKIKRVKMQQEALRRKL 207 (374)
T ss_dssp HHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC----SSCSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh----hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999998622 222222 23333321 22333 68899999999999999999999999
Q ss_pred Hhhhhc
Q 027472 112 SKYQNL 117 (223)
Q Consensus 112 a~y~~~ 117 (223)
..|..+
T Consensus 208 ~~y~~P 213 (374)
T 2y9y_A 208 SEYKNP 213 (374)
T ss_dssp TTCSSH
T ss_pred HHccCC
Confidence 999865
No 49
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=20.46 E-value=15 Score=25.83 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa 112 (223)
......+|.+|+.|+..++.+++
T Consensus 61 ~~~~~~ei~~L~~e~~~L~~e~~ 83 (97)
T 2jn6_A 61 AVSEAEQIRQLKKENALQRARTR 83 (97)
T ss_dssp HHHTHHHHHHHHHCGGGGGGTTS
T ss_pred CCChHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444443
No 50
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.40 E-value=1.4e+02 Score=18.02 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027472 91 SFLQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 91 ~~Lq~QL~~lq~eLa~aq~eLa 112 (223)
-.|..+++.+|+.|...+.+|.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4577888888888888877663
No 51
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=20.25 E-value=74 Score=23.32 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 89 VISFLQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 89 iI~~Lq~QL~~lq~eLa~aq~eLa 112 (223)
++-.|+++|..++.+|..++..|.
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788999999999998888883
No 52
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.13 E-value=1.3e+02 Score=23.69 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027472 87 VGVISFLQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 87 vGiI~~Lq~QL~~lq~eLa~aq~eLa 112 (223)
.+-|-.||.+|...+.||..|+.+|.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLk 59 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLK 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998886
No 53
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=20.08 E-value=1.2e+02 Score=20.61 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027472 93 LQHRLRQLQMDLSCAKSELS 112 (223)
Q Consensus 93 Lq~QL~~lq~eLa~aq~eLa 112 (223)
++.+|..++.+|..++.+++
T Consensus 5 ~q~~i~~le~el~~~r~e~~ 24 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVA 24 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
Done!