Query 027472
Match_columns 223
No_of_seqs 126 out of 302
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 17:31:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027472.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027472hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 61.4 6.4 0.00046 26.9 5.0 58 66-123 15-72 (114)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 38.4 20 0.0014 22.8 4.1 26 88-113 33-58 (61)
3 d1am9a_ a.38.1.1 (A:) SREBP-1a 36.1 24 0.0018 23.3 4.5 31 87-117 49-79 (80)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 28.2 76 0.0055 20.8 6.4 27 87-113 51-77 (88)
5 d1pyia1 g.38.1.1 (A:30-71) PPR 22.3 24 0.0018 21.0 2.2 17 9-25 2-18 (42)
6 d3alca_ g.38.1.1 (A:) Ethanol 20.6 29 0.0021 22.0 2.4 17 7-23 9-25 (65)
7 d1fxkc_ a.2.5.1 (C:) Prefoldin 20.3 21 0.0016 25.0 1.9 26 90-115 10-35 (133)
8 d1urfa_ a.2.6.1 (A:) Protein k 20.0 1.2E+02 0.009 20.4 6.0 30 47-76 25-56 (81)
9 d1k47a2 d.58.26.4 (A:195-329) 19.7 1.3E+02 0.0098 20.7 6.4 11 137-147 93-103 (135)
10 d3coqa1 g.38.1.1 (A:8-48) Gal4 18.8 28 0.002 20.4 1.9 15 10-24 2-16 (41)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.41 E-value=6.4 Score=26.85 Aligned_cols=58 Identities=10% Similarity=0.085 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 027472 66 DAVNSLAYEAEMRLRDPVYGCVGVISFLQHRLRQLQMDLSCAKSELSKYQNLGHAGLI 123 (223)
Q Consensus 66 dA~~SLvYEA~aR~rDPVyGCvGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~~~~~~~ 123 (223)
+-+.+-+-|+..-+.+|++|-.+.|..+..+.+.++.+|..-+..|......+.....
T Consensus 15 ~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~~~g~~L~~ 72 (114)
T d1hcia4 15 NAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQE 72 (114)
T ss_dssp HHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888899999999999999999999999999999999888777655443
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.41 E-value=20 Score=22.82 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027472 88 GVISFLQHRLRQLQMDLSCAKSELSK 113 (223)
Q Consensus 88 GiI~~Lq~QL~~lq~eLa~aq~eLa~ 113 (223)
-.|..|+.++..+++|+...+.++..
T Consensus 33 ~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 33 DYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998887754
No 3
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.12 E-value=24 Score=23.27 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 027472 87 VGVISFLQHRLRQLQMDLSCAKSELSKYQNL 117 (223)
Q Consensus 87 vGiI~~Lq~QL~~lq~eLa~aq~eLa~y~~~ 117 (223)
+-.|..|+.++..++.+....+.++.....+
T Consensus 49 ~~yI~~L~~~~~~L~~e~~~lk~~~~~~~~L 79 (80)
T d1am9a_ 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSKSL 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence 5578999999999999999999888876543
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.16 E-value=76 Score=20.85 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027472 87 VGVISFLQHRLRQLQMDLSCAKSELSK 113 (223)
Q Consensus 87 vGiI~~Lq~QL~~lq~eLa~aq~eLa~ 113 (223)
+-.|..|+.++..++.++...+.+...
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~ 77 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQ 77 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888887777776666543
No 5
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.28 E-value=24 Score=20.96 Aligned_cols=17 Identities=35% Similarity=0.940 Sum_probs=13.4
Q ss_pred CCCChhhhhhhcCCCCC
Q 027472 9 NSPCAACKLLRRKCQPE 25 (223)
Q Consensus 9 ~~~CAACK~lRRkC~~~ 25 (223)
..+|..||..+.||...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 46899999999998753
No 6
>d3alca_ g.38.1.1 (A:) Ethanol regulon transcriptional activator ALCR DNA-binding domain {Emericella nidulans, also known as Aspergillus nidulans [TaxId: 162425]}
Probab=20.56 E-value=29 Score=22.01 Aligned_cols=17 Identities=29% Similarity=0.896 Sum_probs=14.1
Q ss_pred CCCCCChhhhhhhcCCC
Q 027472 7 SSNSPCAACKLLRRKCQ 23 (223)
Q Consensus 7 ~~~~~CAACK~lRRkC~ 23 (223)
-...+|-.||..+.||.
T Consensus 9 R~~~AC~~CR~rK~kCd 25 (65)
T d3alca_ 9 RQNHSCDPCRKGKRRCD 25 (65)
T ss_dssp SSCCSCHHHHHTTCCCS
T ss_pred CcCHhHHHHHhccccCC
Confidence 34578999999999995
No 7
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.31 E-value=21 Score=25.05 Aligned_cols=26 Identities=12% Similarity=0.385 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027472 90 ISFLQHRLRQLQMDLSCAKSELSKYQ 115 (223)
Q Consensus 90 I~~Lq~QL~~lq~eLa~aq~eLa~y~ 115 (223)
+..|+++|..++.++...+..+..|.
T Consensus 10 ~~~l~~~l~~l~~~i~~l~~~~~e~~ 35 (133)
T d1fxkc_ 10 LNIYQSQVELIQQQMEAVRATISELE 35 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555444444443
No 8
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.98 E-value=1.2e+02 Score=20.40 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=19.0
Q ss_pred hchhhHHHHHhhcCCcchH--HHHHHHHHHHh
Q 027472 47 FGASNVTKLLNELQPSQRE--DAVNSLAYEAE 76 (223)
Q Consensus 47 FG~sNV~kmL~~lpp~qR~--dA~~SLvYEA~ 76 (223)
=|+.||++++..-...+|. .-+.+++-|++
T Consensus 25 eGaEnm~k~~~~~~~~DrK~l~eaq~~l~eS~ 56 (81)
T d1urfa_ 25 QGAENMIQTYSNGSTKDRKLLLTAQQMLQDSK 56 (81)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccHHHHHHHHHHHHHHH
Confidence 4899999999986655553 23344444443
No 9
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}
Probab=19.67 E-value=1.3e+02 Score=20.68 Aligned_cols=11 Identities=45% Similarity=0.809 Sum_probs=7.5
Q ss_pred cccccCCCCCC
Q 027472 137 MNLIGGAGGGG 147 (223)
Q Consensus 137 ~~~~~~~g~~~ 147 (223)
.....|+|||+
T Consensus 93 ~ak~~GaGgGG 103 (135)
T d1k47a2 93 VAKSSGAGGGD 103 (135)
T ss_dssp EEEECSSCSSS
T ss_pred chhcccCcCCC
Confidence 45667888874
No 10
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.84 E-value=28 Score=20.42 Aligned_cols=15 Identities=33% Similarity=0.928 Sum_probs=12.2
Q ss_pred CCChhhhhhhcCCCC
Q 027472 10 SPCAACKLLRRKCQP 24 (223)
Q Consensus 10 ~~CAACK~lRRkC~~ 24 (223)
.+|..||..+.||..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 578888888888864
Done!