Query 027473
Match_columns 223
No_of_seqs 277 out of 1449
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 10:26:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 1.6E-18 3.4E-23 140.6 11.1 84 131-220 33-116 (144)
2 TIGR01659 sex-lethal sex-letha 99.8 1.2E-18 2.6E-23 159.5 6.9 159 33-218 114-275 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.8E-17 3.9E-22 149.3 11.8 83 132-220 269-351 (352)
4 TIGR01659 sex-lethal sex-letha 99.7 8.5E-17 1.8E-21 147.3 15.9 81 131-217 106-186 (346)
5 KOG0148 Apoptosis-promoting RN 99.7 7.6E-18 1.6E-22 147.5 7.6 164 33-216 69-236 (321)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.1E-17 8.9E-22 147.0 10.6 82 132-219 3-84 (352)
7 TIGR01645 half-pint poly-U bin 99.7 1E-16 2.2E-21 155.5 8.0 170 33-221 114-287 (612)
8 PF00076 RRM_1: RNA recognitio 99.7 4.4E-16 9.5E-21 108.1 8.9 66 135-204 1-66 (70)
9 KOG0122 Translation initiation 99.6 2E-15 4.3E-20 130.7 8.7 82 131-218 188-269 (270)
10 KOG0121 Nuclear cap-binding pr 99.6 2.5E-15 5.3E-20 119.3 7.2 79 131-215 35-113 (153)
11 KOG0145 RNA-binding protein EL 99.6 6.5E-16 1.4E-20 135.1 3.8 169 29-221 36-212 (360)
12 PLN03120 nucleic acid binding 99.5 3.2E-14 7E-19 125.1 10.1 75 132-216 4-78 (260)
13 TIGR01622 SF-CC1 splicing fact 99.5 3.5E-14 7.7E-19 132.6 10.6 147 53-217 115-265 (457)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.5 4E-14 8.6E-19 133.8 11.0 82 130-217 293-374 (509)
15 TIGR01645 half-pint poly-U bin 99.5 3.3E-14 7.1E-19 138.2 10.0 82 131-218 106-187 (612)
16 TIGR01628 PABP-1234 polyadenyl 99.5 4.4E-14 9.5E-19 135.7 10.5 77 134-216 2-78 (562)
17 KOG0144 RNA-binding protein CU 99.5 1.3E-14 2.9E-19 133.8 5.5 83 132-218 124-206 (510)
18 PF14259 RRM_6: RNA recognitio 99.5 1.3E-13 2.9E-18 96.7 9.4 66 135-204 1-66 (70)
19 TIGR01628 PABP-1234 polyadenyl 99.5 1.1E-13 2.3E-18 133.1 10.6 81 131-218 284-364 (562)
20 TIGR01648 hnRNP-R-Q heterogene 99.5 1.1E-13 2.3E-18 134.1 10.3 70 130-203 56-125 (578)
21 KOG0144 RNA-binding protein CU 99.5 8.6E-14 1.9E-18 128.5 9.0 84 131-217 33-116 (510)
22 KOG0145 RNA-binding protein EL 99.5 8.6E-14 1.9E-18 121.9 8.4 86 130-221 39-124 (360)
23 KOG0107 Alternative splicing f 99.5 7.2E-14 1.6E-18 116.0 7.4 77 132-219 10-86 (195)
24 smart00362 RRM_2 RNA recogniti 99.5 2.7E-13 5.9E-18 92.4 8.9 71 134-212 1-71 (72)
25 PLN03213 repressor of silencin 99.5 2E-13 4.4E-18 128.0 9.3 79 132-220 10-90 (759)
26 KOG0149 Predicted RNA-binding 99.5 9.9E-14 2.1E-18 119.6 6.6 62 132-196 12-73 (247)
27 COG0724 RNA-binding proteins ( 99.5 4.1E-13 8.9E-18 111.9 10.1 79 132-216 115-193 (306)
28 KOG0114 Predicted RNA-binding 99.5 5.1E-13 1.1E-17 102.7 9.5 82 125-215 11-92 (124)
29 TIGR01622 SF-CC1 splicing fact 99.4 4.1E-13 8.8E-18 125.4 10.6 79 131-216 88-166 (457)
30 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 3.5E-13 7.6E-18 127.9 10.1 83 131-218 393-480 (481)
31 PLN03121 nucleic acid binding 99.4 5.2E-13 1.1E-17 116.2 9.8 74 132-215 5-78 (243)
32 KOG0148 Apoptosis-promoting RN 99.4 2.5E-13 5.4E-18 119.3 7.4 84 132-221 62-145 (321)
33 KOG0126 Predicted RNA-binding 99.4 2.3E-14 4.9E-19 119.7 0.6 78 132-215 35-112 (219)
34 TIGR01648 hnRNP-R-Q heterogene 99.4 4.9E-13 1.1E-17 129.5 9.7 73 132-218 233-307 (578)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 8.4E-13 1.8E-17 125.4 10.7 77 131-218 274-351 (481)
36 smart00360 RRM RNA recognition 99.4 1.2E-12 2.6E-17 88.7 8.3 70 137-212 1-70 (71)
37 KOG0108 mRNA cleavage and poly 99.4 5.9E-13 1.3E-17 124.9 8.2 81 133-219 19-99 (435)
38 KOG0105 Alternative splicing f 99.4 5.4E-13 1.2E-17 111.9 6.0 76 132-216 6-81 (241)
39 KOG0113 U1 small nuclear ribon 99.4 2.2E-12 4.8E-17 114.6 9.9 73 130-205 99-171 (335)
40 KOG0125 Ataxin 2-binding prote 99.4 1.5E-12 3.3E-17 116.8 8.7 82 129-218 93-174 (376)
41 KOG0117 Heterogeneous nuclear 99.4 3E-12 6.5E-17 118.7 10.1 84 131-218 82-166 (506)
42 cd00590 RRM RRM (RNA recogniti 99.4 9.7E-12 2.1E-16 85.0 9.9 74 134-214 1-74 (74)
43 KOG0146 RNA-binding protein ET 99.3 1.9E-12 4.2E-17 113.9 7.2 82 132-217 19-100 (371)
44 KOG0111 Cyclophilin-type pepti 99.3 7.8E-13 1.7E-17 113.6 4.4 81 130-218 8-90 (298)
45 KOG0130 RNA-binding protein RB 99.3 2.8E-12 6.1E-17 102.9 6.9 79 131-215 71-149 (170)
46 KOG0147 Transcriptional coacti 99.3 2.6E-12 5.6E-17 121.5 5.5 145 51-215 203-355 (549)
47 KOG4207 Predicted splicing fac 99.3 5.4E-12 1.2E-16 107.5 6.4 79 132-216 13-91 (256)
48 KOG0131 Splicing factor 3b, su 99.3 8.3E-12 1.8E-16 104.3 6.0 81 130-216 7-87 (203)
49 KOG0117 Heterogeneous nuclear 99.2 1.5E-11 3.2E-16 114.2 7.3 73 132-218 259-331 (506)
50 PF13893 RRM_5: RNA recognitio 99.2 6E-11 1.3E-15 80.4 7.6 56 149-215 1-56 (56)
51 KOG0127 Nucleolar protein fibr 99.2 3.9E-11 8.4E-16 113.7 8.5 173 34-218 13-196 (678)
52 KOG0123 Polyadenylate-binding 99.2 2.5E-11 5.4E-16 112.3 6.3 136 36-214 8-149 (369)
53 KOG0109 RNA-binding protein LA 99.2 1.7E-11 3.7E-16 108.7 5.0 72 133-218 3-74 (346)
54 KOG1457 RNA binding protein (c 99.1 2.7E-10 5.8E-15 98.2 10.3 86 129-217 31-117 (284)
55 KOG0127 Nucleolar protein fibr 99.1 1.5E-10 3.3E-15 109.8 9.1 81 131-217 291-377 (678)
56 KOG0132 RNA polymerase II C-te 99.1 1.2E-10 2.5E-15 114.0 7.2 76 131-218 420-495 (894)
57 TIGR01642 U2AF_lg U2 snRNP aux 99.1 2.5E-10 5.5E-15 107.9 9.2 73 131-216 174-258 (509)
58 KOG0146 RNA-binding protein ET 99.1 1E-10 2.3E-15 103.0 5.2 82 131-218 284-365 (371)
59 smart00361 RRM_1 RNA recogniti 99.1 5.5E-10 1.2E-14 79.4 7.8 63 146-212 2-69 (70)
60 KOG4206 Spliceosomal protein s 99.0 5.3E-10 1.1E-14 96.0 7.5 78 132-218 9-90 (221)
61 KOG0124 Polypyrimidine tract-b 99.0 2.2E-10 4.9E-15 104.5 5.2 82 132-219 113-194 (544)
62 KOG4212 RNA-binding protein hn 99.0 2E-09 4.4E-14 100.1 10.3 72 132-214 536-607 (608)
63 KOG0124 Polypyrimidine tract-b 99.0 3.6E-10 7.9E-15 103.2 4.8 184 23-222 104-294 (544)
64 KOG0110 RNA-binding protein (R 99.0 4.1E-10 9E-15 109.3 5.1 128 73-217 564-692 (725)
65 KOG0415 Predicted peptidyl pro 99.0 9.8E-10 2.1E-14 100.0 6.8 78 132-215 239-316 (479)
66 KOG4212 RNA-binding protein hn 99.0 2.3E-09 5E-14 99.8 9.1 75 132-213 44-119 (608)
67 KOG0110 RNA-binding protein (R 99.0 1.5E-09 3.2E-14 105.5 8.0 85 133-220 516-600 (725)
68 KOG0131 Splicing factor 3b, su 99.0 8.3E-10 1.8E-14 92.4 5.3 80 132-217 96-176 (203)
69 KOG1457 RNA binding protein (c 98.9 1.4E-09 3.1E-14 93.7 4.1 76 131-213 209-284 (284)
70 KOG4208 Nucleolar RNA-binding 98.9 6.1E-09 1.3E-13 88.6 7.2 71 132-205 49-120 (214)
71 KOG0109 RNA-binding protein LA 98.8 3E-09 6.5E-14 94.7 4.9 72 131-216 77-148 (346)
72 KOG0153 Predicted RNA-binding 98.8 9.9E-09 2.1E-13 93.1 8.0 76 131-218 227-303 (377)
73 KOG0123 Polyadenylate-binding 98.8 2.1E-08 4.6E-13 92.8 8.2 76 133-220 2-77 (369)
74 KOG1548 Transcription elongati 98.7 4.6E-08 1E-12 88.8 8.0 80 130-216 132-219 (382)
75 KOG4206 Spliceosomal protein s 98.7 7.7E-08 1.7E-12 82.8 8.3 77 131-217 145-221 (221)
76 KOG0533 RRM motif-containing p 98.7 5.5E-08 1.2E-12 85.3 7.3 71 132-206 83-153 (243)
77 KOG4454 RNA binding protein (R 98.6 1.5E-08 3.2E-13 87.3 1.8 68 132-204 9-76 (267)
78 KOG4205 RNA-binding protein mu 98.6 3.2E-08 7E-13 89.6 4.1 63 131-196 5-67 (311)
79 KOG4660 Protein Mei2, essentia 98.6 4.3E-08 9.4E-13 93.3 4.9 66 131-204 74-139 (549)
80 KOG0116 RasGAP SH3 binding pro 98.5 1.7E-07 3.8E-12 87.9 6.8 64 131-197 287-350 (419)
81 KOG4209 Splicing factor RNPS1, 98.5 1.6E-07 3.6E-12 81.9 6.2 69 132-204 101-169 (231)
82 KOG0106 Alternative splicing f 98.5 8.4E-08 1.8E-12 82.7 3.8 71 133-217 2-72 (216)
83 KOG0151 Predicted splicing reg 98.5 4.4E-07 9.5E-12 88.7 8.6 79 132-216 174-255 (877)
84 KOG4205 RNA-binding protein mu 98.4 6.1E-07 1.3E-11 81.4 7.6 140 35-195 15-157 (311)
85 KOG0226 RNA-binding proteins [ 98.3 7.3E-07 1.6E-11 78.3 5.7 70 131-203 189-258 (290)
86 KOG4661 Hsp27-ERE-TATA-binding 98.3 8.1E-07 1.8E-11 85.3 6.4 83 132-220 405-487 (940)
87 PF04059 RRM_2: RNA recognitio 98.3 5.1E-06 1.1E-10 63.4 9.1 81 133-216 2-85 (97)
88 KOG0120 Splicing factor U2AF, 98.2 1.4E-06 2.9E-11 83.3 4.3 89 130-222 287-375 (500)
89 KOG1995 Conserved Zn-finger pr 98.2 4.2E-06 9.2E-11 76.3 6.6 82 131-218 65-154 (351)
90 KOG4211 Splicing factor hnRNP- 98.0 1.9E-05 4.1E-10 74.7 7.0 59 132-196 10-68 (510)
91 PF08777 RRM_3: RNA binding mo 97.9 2.9E-05 6.2E-10 59.9 6.3 59 133-200 2-60 (105)
92 KOG1190 Polypyrimidine tract-b 97.9 3.9E-05 8.6E-10 71.4 8.2 75 132-217 297-372 (492)
93 KOG1855 Predicted RNA-binding 97.8 3.3E-05 7.1E-10 72.2 5.7 72 131-202 230-311 (484)
94 KOG4210 Nuclear localization s 97.8 1.6E-05 3.4E-10 71.5 3.3 79 132-217 184-263 (285)
95 KOG4211 Splicing factor hnRNP- 97.7 0.00012 2.6E-09 69.4 8.4 61 132-196 103-164 (510)
96 KOG2314 Translation initiation 97.7 6.2E-05 1.3E-09 72.5 6.4 78 131-214 57-140 (698)
97 KOG1190 Polypyrimidine tract-b 97.7 9.5E-05 2.1E-09 68.9 7.2 76 132-216 414-489 (492)
98 KOG4307 RNA binding protein RB 97.7 0.0003 6.4E-09 69.3 10.8 67 133-203 868-935 (944)
99 KOG1456 Heterogeneous nuclear 97.7 0.0011 2.4E-08 61.4 13.6 78 131-219 286-364 (494)
100 KOG0147 Transcriptional coacti 97.7 1.7E-05 3.7E-10 75.8 1.7 75 131-212 178-252 (549)
101 KOG1456 Heterogeneous nuclear 97.7 0.0002 4.4E-09 66.2 8.4 78 131-217 119-198 (494)
102 KOG0106 Alternative splicing f 97.6 3.8E-05 8.3E-10 66.4 3.1 68 131-212 98-165 (216)
103 PF11608 Limkain-b1: Limkain b 97.6 0.00047 1E-08 51.5 8.0 68 133-216 3-75 (90)
104 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00021 4.6E-09 48.4 4.9 52 133-194 2-53 (53)
105 KOG4849 mRNA cleavage factor I 97.4 0.00015 3.1E-09 66.6 4.1 86 132-222 80-167 (498)
106 KOG0129 Predicted RNA-binding 97.3 0.0011 2.3E-08 63.5 8.2 65 131-196 258-325 (520)
107 KOG0105 Alternative splicing f 97.2 0.0038 8.3E-08 53.1 9.8 62 132-203 115-176 (241)
108 KOG0128 RNA-binding protein SA 97.1 0.00018 3.9E-09 71.9 1.7 68 132-203 736-803 (881)
109 KOG0112 Large RNA-binding prot 97.1 0.00066 1.4E-08 68.4 4.8 80 131-220 454-533 (975)
110 KOG0129 Predicted RNA-binding 97.0 0.002 4.2E-08 61.7 7.4 65 128-196 366-432 (520)
111 KOG1365 RNA-binding protein Fu 97.0 0.0036 7.7E-08 58.3 8.8 61 132-196 161-225 (508)
112 KOG0120 Splicing factor U2AF, 96.9 0.003 6.5E-08 60.8 7.7 62 149-214 426-488 (500)
113 COG5175 MOT2 Transcriptional r 96.9 0.004 8.7E-08 57.2 7.8 84 132-219 114-204 (480)
114 KOG2416 Acinus (induces apopto 96.8 0.0013 2.9E-08 63.9 4.2 79 130-217 442-521 (718)
115 PF08675 RNA_bind: RNA binding 96.7 0.011 2.4E-07 44.0 7.5 55 132-198 9-63 (87)
116 PF05172 Nup35_RRM: Nup53/35/4 96.6 0.0064 1.4E-07 46.6 6.2 71 132-215 6-89 (100)
117 KOG3152 TBP-binding protein, a 96.2 0.0031 6.7E-08 55.8 2.5 79 132-210 74-161 (278)
118 PF10309 DUF2414: Protein of u 96.0 0.03 6.5E-07 39.4 6.1 54 133-197 6-62 (62)
119 KOG0112 Large RNA-binding prot 96.0 0.0015 3.3E-08 65.9 -0.6 68 131-203 371-439 (975)
120 KOG0128 RNA-binding protein SA 95.9 0.00068 1.5E-08 68.0 -3.2 68 132-202 667-734 (881)
121 KOG4574 RNA-binding protein (c 95.9 0.0043 9.4E-08 62.4 2.2 74 134-217 300-373 (1007)
122 KOG0115 RNA-binding protein p5 95.8 0.0089 1.9E-07 52.9 3.6 62 132-197 31-92 (275)
123 PF03467 Smg4_UPF3: Smg-4/UPF3 95.8 0.026 5.7E-07 47.3 6.1 83 131-215 6-95 (176)
124 KOG1365 RNA-binding protein Fu 95.7 0.018 3.9E-07 53.8 5.4 65 132-200 280-347 (508)
125 KOG4676 Splicing factor, argin 95.6 0.0094 2E-07 55.6 3.1 63 134-202 9-76 (479)
126 KOG1548 Transcription elongati 95.1 0.072 1.6E-06 49.1 7.1 67 131-204 264-341 (382)
127 KOG2193 IGF-II mRNA-binding pr 95.1 0.02 4.4E-07 54.0 3.6 60 133-201 2-61 (584)
128 PF08952 DUF1866: Domain of un 95.1 0.072 1.6E-06 43.5 6.2 53 148-215 52-104 (146)
129 KOG2253 U1 snRNP complex, subu 94.6 0.061 1.3E-06 53.0 5.5 61 132-204 40-100 (668)
130 KOG2068 MOT2 transcription fac 94.2 0.026 5.7E-07 51.5 1.9 83 132-219 77-164 (327)
131 KOG4307 RNA binding protein RB 94.2 0.061 1.3E-06 53.6 4.5 66 127-196 429-495 (944)
132 PF07576 BRAP2: BRCA1-associat 93.7 1.3 2.9E-05 34.4 10.4 69 132-205 13-82 (110)
133 KOG2202 U2 snRNP splicing fact 93.6 0.033 7.2E-07 49.2 1.4 60 149-215 85-145 (260)
134 KOG1996 mRNA splicing factor [ 92.2 0.42 9.1E-06 43.5 6.3 65 146-215 300-364 (378)
135 KOG2591 c-Mpl binding protein, 92.1 0.45 9.7E-06 46.5 6.8 64 131-204 174-246 (684)
136 PF04847 Calcipressin: Calcipr 91.9 0.4 8.7E-06 40.6 5.7 60 145-216 8-69 (184)
137 PF15023 DUF4523: Protein of u 91.8 0.89 1.9E-05 37.4 7.2 73 132-218 86-162 (166)
138 KOG0226 RNA-binding proteins [ 90.9 0.029 6.4E-07 49.7 -2.3 70 26-99 187-262 (290)
139 KOG4285 Mitotic phosphoprotein 90.1 1.3 2.8E-05 40.4 7.4 63 132-205 197-259 (350)
140 KOG0804 Cytoplasmic Zn-finger 88.0 1.7 3.7E-05 41.6 6.9 69 132-205 74-143 (493)
141 KOG4210 Nuclear localization s 85.8 0.68 1.5E-05 41.7 2.9 69 131-202 87-155 (285)
142 KOG4660 Protein Mei2, essentia 84.2 1.9 4.1E-05 42.0 5.2 81 132-216 361-471 (549)
143 KOG2318 Uncharacterized conser 82.8 6.3 0.00014 38.9 8.1 84 130-214 172-304 (650)
144 PF03880 DbpA: DbpA RNA bindin 81.9 5.3 0.00011 28.3 5.7 59 142-215 11-74 (74)
145 PF11767 SET_assoc: Histone ly 80.4 7.3 0.00016 27.6 5.8 49 143-203 11-59 (66)
146 KOG2891 Surface glycoprotein [ 77.7 1.6 3.4E-05 39.6 2.2 72 132-203 149-248 (445)
147 KOG2193 IGF-II mRNA-binding pr 70.4 0.21 4.6E-06 47.4 -5.4 75 131-214 79-153 (584)
148 KOG2135 Proteins containing th 65.4 5.7 0.00012 38.3 2.9 73 132-217 372-445 (526)
149 KOG4676 Splicing factor, argin 65.2 1.4 3.1E-05 41.5 -1.1 63 132-202 151-213 (479)
150 PF03468 XS: XS domain; Inter 64.8 4 8.6E-05 32.0 1.5 52 134-191 10-70 (116)
151 KOG4454 RNA binding protein (R 64.6 1.8 3.8E-05 38.0 -0.5 67 132-202 80-150 (267)
152 COG0724 RNA-binding proteins ( 60.3 12 0.00027 30.4 3.8 161 33-201 122-291 (306)
153 KOG4019 Calcineurin-mediated s 45.6 16 0.00035 31.1 2.2 73 132-215 10-87 (193)
154 KOG4008 rRNA processing protei 43.9 11 0.00024 33.3 1.0 31 132-162 40-70 (261)
155 PF14893 PNMA: PNMA 42.5 22 0.00047 32.9 2.7 25 131-155 17-41 (331)
156 KOG2295 C2H2 Zn-finger protein 39.9 4.3 9.4E-05 39.9 -2.3 68 132-203 231-299 (648)
157 KOG4410 5-formyltetrahydrofola 36.7 1E+02 0.0022 28.4 5.9 50 132-189 330-379 (396)
158 PF15513 DUF4651: Domain of un 36.4 53 0.0011 23.1 3.3 22 147-168 9-30 (62)
159 PF10567 Nab6_mRNP_bdg: RNA-re 32.9 59 0.0013 29.7 3.9 84 132-216 15-106 (309)
160 KOG1295 Nonsense-mediated deca 31.3 77 0.0017 29.9 4.4 74 132-207 7-82 (376)
161 KOG4483 Uncharacterized conser 30.7 85 0.0018 30.1 4.6 55 132-196 391-446 (528)
162 PF00403 HMA: Heavy-metal-asso 28.0 1.8E+02 0.0038 19.0 6.0 54 134-196 1-58 (62)
163 PF11411 DNA_ligase_IV: DNA li 27.5 38 0.00082 21.3 1.2 16 142-157 19-34 (36)
164 COG0079 HisC Histidinol-phosph 22.1 1.2E+02 0.0027 27.9 4.1 69 132-214 146-223 (356)
165 COG0030 KsgA Dimethyladenosine 21.4 1.2E+02 0.0026 27.1 3.7 32 133-164 96-127 (259)
166 PF07292 NID: Nmi/IFP 35 domai 21.2 63 0.0014 24.1 1.6 22 132-153 52-73 (88)
167 PF03439 Spt5-NGN: Early trans 20.5 1.1E+02 0.0023 22.2 2.7 27 176-202 43-69 (84)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=1.6e-18 Score=140.56 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
.+++|||+|||+++||++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|+ +..|
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kGfaFV~F~~~e~A~~Al~~lng~~i~---Gr~l 106 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRET---GRSRGFGFVNFNDEGAATAAISEMDGKELN---GRHI 106 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 3779999999999999999999999999999999999743 677889999999999999999999999995 5789
Q ss_pred EEEcCcchhh
Q 027473 211 RSFFPNQFFA 220 (223)
Q Consensus 211 risfa~~~~~ 220 (223)
+|+|+..+..
T Consensus 107 ~V~~a~~~~~ 116 (144)
T PLN03134 107 RVNPANDRPS 116 (144)
T ss_pred EEEeCCcCCC
Confidence 9999987654
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.75 E-value=1.2e-18 Score=159.46 Aligned_cols=159 Identities=14% Similarity=0.155 Sum_probs=120.6
Q ss_pred CCccccccccccccccccCCCCCCCcccccchhhhhccCC--CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 027473 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (223)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~~~~~~--~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~ 109 (223)
.+..+++...+++.|.. +-.|.+++++.+.-+ .++++ |+.|.+. ++.+|+. .|+|..+.++.+...-. .
T Consensus 114 nLp~~~te~~L~~lF~~-~G~V~~v~i~~d~~t--g~srGyaFVeF~~~e~A~~Ai~-~LnG~~l~gr~i~V~~a-~--- 185 (346)
T TIGR01659 114 YLPQDMTDRELYALFRT-IGPINTCRIMRDYKT--GYSFGYAFVDFGSEADSQRAIK-NLNGITVRNKRLKVSYA-R--- 185 (346)
T ss_pred CCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCC--CccCcEEEEEEccHHHHHHHHH-HcCCCccCCceeeeecc-c---
Confidence 56777888888777765 344667777753333 24554 7788876 5557887 89998888765443210 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHH
Q 027473 110 SAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (223)
Q Consensus 110 ~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~ 189 (223)
+.. .....++|||+|||.++||++|+++|++||.|++|+|+.++.+ |++||||||+|.+.++
T Consensus 186 -------------p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~t---g~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 186 -------------PGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLT---GTPRGVAFVRFNKREE 247 (346)
T ss_pred -------------ccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCC---CccceEEEEEECCHHH
Confidence 000 0112568999999999999999999999999999999998743 7788899999999999
Q ss_pred HHHHHHHhcCceecCCCCCcEEEEcCcch
Q 027473 190 AATAMDALQVMLTHQAFLGSLRSFFPNQF 218 (223)
Q Consensus 190 A~~Al~~LnG~~l~~~~~~~lrisfa~~~ 218 (223)
|++||+.||++.+++. ...|+|.||+..
T Consensus 248 A~~Ai~~lng~~~~g~-~~~l~V~~a~~~ 275 (346)
T TIGR01659 248 AQEAISALNNVIPEGG-SQPLTVRLAEEH 275 (346)
T ss_pred HHHHHHHhCCCccCCC-ceeEEEEECCcc
Confidence 9999999999998653 478999999864
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.73 E-value=1.8e-17 Score=149.32 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=76.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+.+|||+|||+++++++|+++|++||.|.+|+|+.++.+ |++||||||+|.+.++|.+||+.|||+.|+ +..|+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t---~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~---gr~i~ 342 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTT---NQCKGYGFVSMTNYDEAAMAILSLNGYTLG---NRVLQ 342 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCC---CCccceEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 457999999999999999999999999999999999843 677889999999999999999999999994 68999
Q ss_pred EEcCcchhh
Q 027473 212 SFFPNQFFA 220 (223)
Q Consensus 212 isfa~~~~~ 220 (223)
|+|+..|.+
T Consensus 343 V~~~~~~~~ 351 (352)
T TIGR01661 343 VSFKTNKAY 351 (352)
T ss_pred EEEccCCCC
Confidence 999998764
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=8.5e-17 Score=147.30 Aligned_cols=81 Identities=25% Similarity=0.366 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||+++||++|+++|+.||.|++|+|+.++.+ |+++|||||+|.++++|++||+.|||..|. ...|
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~t---g~srGyaFVeF~~~e~A~~Ai~~LnG~~l~---gr~i 179 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKT---GYSFGYAFVDFGSEADSQRAIKNLNGITVR---NKRL 179 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CccCcEEEEEEccHHHHHHHHHHcCCCccC---Ccee
Confidence 4789999999999999999999999999999999998743 677789999999999999999999999995 5789
Q ss_pred EEEcCcc
Q 027473 211 RSFFPNQ 217 (223)
Q Consensus 211 risfa~~ 217 (223)
+|+||+.
T Consensus 180 ~V~~a~p 186 (346)
T TIGR01659 180 KVSYARP 186 (346)
T ss_pred eeecccc
Confidence 9999875
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=7.6e-18 Score=147.55 Aligned_cols=164 Identities=16% Similarity=0.205 Sum_probs=126.5
Q ss_pred CCccccccccccccccccCCCCCCCcccccchhhhhccCC--CccCCC-CCCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 027473 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSG-GQSARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (223)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~~~~~~--~~~~~~-~~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~ 109 (223)
|+..+|..-.+++.|-. +--|.|+|+|.+.-+ .-||| |+||.. .++-+|+. +|+|.=+..|.+ +...+.+-+
T Consensus 69 dls~eI~~e~lr~aF~p-FGevS~akvirD~~T--~KsKGYgFVSf~~k~dAEnAI~-~MnGqWlG~R~I-RTNWATRKp 143 (321)
T KOG0148|consen 69 DLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNT--GKSKGYGFVSFPNKEDAENAIQ-QMNGQWLGRRTI-RTNWATRKP 143 (321)
T ss_pred hcchhcchHHHHHHhcc-ccccccceEeecccC--CcccceeEEeccchHHHHHHHH-HhCCeeecccee-eccccccCc
Confidence 89999999999997743 666889999986665 46777 678887 47778998 999998887654 444444222
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHH
Q 027473 110 SA-KDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188 (223)
Q Consensus 110 ~~-~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~ 188 (223)
.. +++..-|- ..-....|+ ++++||||++.-+||++|++.|++||.|.+||+.+++ | |+||.|++.|
T Consensus 144 ~e~n~~~ltfd-eV~NQssp~--NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-----G----YaFVrF~tkE 211 (321)
T KOG0148|consen 144 SEMNGKPLTFD-EVYNQSSPD--NTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-----G----YAFVRFETKE 211 (321)
T ss_pred cccCCCCccHH-HHhccCCCC--CceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc-----c----eEEEEecchh
Confidence 11 01111110 001122333 8999999999999999999999999999999999997 5 9999999999
Q ss_pred HHHHHHHHhcCceecCCCCCcEEEEcCc
Q 027473 189 HAATAMDALQVMLTHQAFLGSLRSFFPN 216 (223)
Q Consensus 189 ~A~~Al~~LnG~~l~~~~~~~lrisfa~ 216 (223)
+|..||..+||..| .++.+|.+|-+
T Consensus 212 aAahAIv~mNntei---~G~~VkCsWGK 236 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEI---GGQLVRCSWGK 236 (321)
T ss_pred hHHHHHHHhcCcee---CceEEEEeccc
Confidence 99999999999999 57889999965
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=4.1e-17 Score=146.98 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=75.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||.++||++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|. +..|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~---g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~---g~~i~ 76 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVT---GQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ---NKTIK 76 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCC---CccceEEEEEECcHHHHHHHHhhcccEEEC---CeeEE
Confidence 679999999999999999999999999999999999743 678889999999999999999999999995 67899
Q ss_pred EEcCcchh
Q 027473 212 SFFPNQFF 219 (223)
Q Consensus 212 isfa~~~~ 219 (223)
|+|++++-
T Consensus 77 v~~a~~~~ 84 (352)
T TIGR01661 77 VSYARPSS 84 (352)
T ss_pred EEeecccc
Confidence 99997654
No 7
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=1e-16 Score=155.53 Aligned_cols=170 Identities=12% Similarity=0.050 Sum_probs=115.8
Q ss_pred CCccccccccccccccccCCCCCCCcccccchhhh-hccCC--CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 027473 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRY-LRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPG 108 (223)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~-~~~~~--~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~ 108 (223)
.+..+++.=-+++.| ..+...+.|.-.+|+. ..++| |+.|.+. ++-+|+. .|+|..+.++.+...-...
T Consensus 114 nLp~~~tEe~Lr~lF----~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~-~lnG~~i~GR~IkV~rp~~-- 186 (612)
T TIGR01645 114 SISFELREDTIRRAF----DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALE-QMNGQMLGGRNIKVGRPSN-- 186 (612)
T ss_pred CCCCCCCHHHHHHHH----HccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHH-hcCCeEEecceeeeccccc--
Confidence 344444444444443 3344444444445654 35666 6788876 4446886 8999988887655421100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHH
Q 027473 109 PSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188 (223)
Q Consensus 109 ~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~ 188 (223)
.+... ...... .......++|||+|||.++++++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.+
T Consensus 187 -~p~a~--~~~~~~---~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~t---gksKGfGFVeFe~~e 257 (612)
T TIGR01645 187 -MPQAQ--PIIDMV---QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG---RGHKGYGFIEYNNLQ 257 (612)
T ss_pred -ccccc--cccccc---cccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCC---CCcCCeEEEEECCHH
Confidence 00000 000000 001123579999999999999999999999999999999998743 567789999999999
Q ss_pred HHHHHHHHhcCceecCCCCCcEEEEcCcchhhh
Q 027473 189 HAATAMDALQVMLTHQAFLGSLRSFFPNQFFAA 221 (223)
Q Consensus 189 ~A~~Al~~LnG~~l~~~~~~~lrisfa~~~~~~ 221 (223)
+|.+||+.|||+.| .+..|||.+|-.++.+
T Consensus 258 ~A~kAI~amNg~el---gGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 258 SQSEAIASMNLFDL---GGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHHHHHHhCCCee---CCeEEEEEecCCCccc
Confidence 99999999999999 4788999998865544
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=4.4e-16 Score=108.09 Aligned_cols=66 Identities=26% Similarity=0.450 Sum_probs=61.1
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 135 LfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
|||+|||.++|+++|+++|++||.|..+.+..+.. ++++++|||+|.+.++|++|++.|||+.+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSS----GKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccccc----ccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 79999999999999999999999999999999732 5677899999999999999999999999953
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2e-15 Score=130.67 Aligned_cols=82 Identities=26% Similarity=0.272 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|-|.||+.+++|++|++||.+||.|..|.|..++.+ |.+||||||.|.++++|++||+.|||+-++ .--|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~T---G~~kGFAFVtF~sRddA~rAI~~LnG~gyd---~LIL 261 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKET---GLSKGFAFVTFESRDDAARAIADLNGYGYD---NLIL 261 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEcccc---CcccceEEEEEecHHHHHHHHHHccCcccc---eEEE
Confidence 3789999999999999999999999999999999999965 899999999999999999999999999885 4679
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
||+|++++
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99999875
No 10
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.5e-15 Score=119.29 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
.++||||+||++.+|||.|.+||+.+|.|+.|.+-.|+.+ -.|.|||||+|.++++|+.|++-++|+.++ ...|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~k---ktpCGFCFVeyy~~~dA~~AlryisgtrLd---dr~i 108 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFK---KTPCGFCFVEYYSRDDAEDALRYISGTRLD---DRPI 108 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCC---cCccceEEEEEecchhHHHHHHHhccCccc---ccce
Confidence 4899999999999999999999999999999988888843 246679999999999999999999999996 4679
Q ss_pred EEEcC
Q 027473 211 RSFFP 215 (223)
Q Consensus 211 risfa 215 (223)
||.|-
T Consensus 109 r~D~D 113 (153)
T KOG0121|consen 109 RIDWD 113 (153)
T ss_pred eeecc
Confidence 98875
No 11
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=6.5e-16 Score=135.14 Aligned_cols=169 Identities=17% Similarity=0.260 Sum_probs=126.3
Q ss_pred CCCCCCccccccccccc----cccccCCCCCCCcccccchhhh-hccCC--CccCCC-CCCCCCCCCCCCCCCCCCCCcc
Q 027473 29 DYDVPSGHELSSYYTRD----DDRGALRGMRDTDSLGASYDRY-LRSAQ--ISSYSG-GQSARHMSGGMPSRPVDDPRIV 100 (223)
Q Consensus 29 d~~~~~~~~~~~y~~~~----~~r~~~~~~~~~~~i~~~~d~~-~~~~~--~~~~~~-~~~~r~~~g~~~G~~~~~~~~~ 100 (223)
|-+....+.+.+||||. ++|.-|.|+.+.++..-.-|.- .+|-| |+-|-. .++-+|+- -++|.-+-.
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Ain-tlNGLrLQ~---- 110 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAIN-TLNGLRLQN---- 110 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHh-hhcceeecc----
Confidence 44557789999999986 7799999999988776444543 23433 333333 25556664 566644332
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEE
Q 027473 101 GIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILC 180 (223)
Q Consensus 101 ~~g~~~~~~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~a 180 (223)
+.+..+-.+|...... ...|||.+||..+|..||+.||++||.|..-||+.|..+ |.++|.+
T Consensus 111 -------------KTIKVSyARPSs~~Ik--~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvt---g~srGVg 172 (360)
T KOG0145|consen 111 -------------KTIKVSYARPSSDSIK--DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVT---GLSRGVG 172 (360)
T ss_pred -------------ceEEEEeccCChhhhc--ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhccc---ceeccee
Confidence 3344433444433333 569999999999999999999999999999999999844 7788899
Q ss_pred EEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCcchhhh
Q 027473 181 FVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPNQFFAA 221 (223)
Q Consensus 181 FVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~~~~~~ 221 (223)
||.|+.+.+|++||+.|||.+-.+ ...+|.|+||+++-++
T Consensus 173 FiRFDKr~EAe~AIk~lNG~~P~g-~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 173 FIRFDKRIEAEEAIKGLNGQKPSG-CTEPITVKFANNPSQK 212 (360)
T ss_pred EEEecchhHHHHHHHhccCCCCCC-CCCCeEEEecCCcccc
Confidence 999999999999999999998755 4689999999987543
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.54 E-value=3.2e-14 Score=125.09 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=67.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||+.+||++|+++|+.||.|.+|+|+.++. ++|||||+|.++++|+.|| .|||..| .++.|+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~------~~GfAFVtF~d~eaAe~Al-lLnG~~l---~gr~V~ 73 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE------RSQIAYVTFKDPQGAETAL-LLSGATI---VDQSVT 73 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC------CCCEEEEEeCcHHHHHHHH-HhcCCee---CCceEE
Confidence 57999999999999999999999999999999998863 2249999999999999999 5999999 468899
Q ss_pred EEcCc
Q 027473 212 SFFPN 216 (223)
Q Consensus 212 isfa~ 216 (223)
|.++.
T Consensus 74 Vt~a~ 78 (260)
T PLN03120 74 ITPAE 78 (260)
T ss_pred EEecc
Confidence 99986
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.53 E-value=3.5e-14 Score=132.56 Aligned_cols=147 Identities=18% Similarity=0.271 Sum_probs=100.8
Q ss_pred CCCCCcccccchhhh-hccCC--CccCCCCC-CCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 027473 53 GMRDTDSLGASYDRY-LRSAQ--ISSYSGGQ-SARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLP 128 (223)
Q Consensus 53 ~~~~~~~i~~~~d~~-~~~~~--~~~~~~~~-~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~p~~~~p 128 (223)
.|.+.+++. |+. ..++| |+.|...+ +-.|+. ++|..+.++.+...-... ...+........+ ...|
T Consensus 115 ~v~~v~i~~---d~~~~~skg~afVeF~~~e~A~~Al~--l~g~~~~g~~i~v~~~~~----~~~~~~~~~~~~~-~~~p 184 (457)
T TIGR01622 115 KVRDVQCIK---DRNSRRSKGVAYVEFYDVESVIKALA--LTGQMLLGRPIIVQSSQA----EKNRAAKAATHQP-GDIP 184 (457)
T ss_pred CeeEEEEee---cCCCCCcceEEEEEECCHHHHHHHHH--hCCCEECCeeeEEeecch----hhhhhhhcccccC-CCCC
Confidence 455555553 332 24454 66777754 435664 788777766554321100 0000000000000 0112
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 129 ~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
..++|||+|||.++|+++|+++|++||.|..|+|+.++.+ |+++|||||+|.+.++|..|++.|||..|. +.
T Consensus 185 --~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~---g~~~g~afV~f~~~e~A~~A~~~l~g~~i~---g~ 256 (457)
T TIGR01622 185 --NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPET---GRSKGFGFIQFHDAEEAKEALEVMNGFELA---GR 256 (457)
T ss_pred --CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHhcCCcEEC---CE
Confidence 1689999999999999999999999999999999998743 677889999999999999999999999994 67
Q ss_pred cEEEEcCcc
Q 027473 209 SLRSFFPNQ 217 (223)
Q Consensus 209 ~lrisfa~~ 217 (223)
.|+|+||+.
T Consensus 257 ~i~v~~a~~ 265 (457)
T TIGR01622 257 PIKVGYAQD 265 (457)
T ss_pred EEEEEEccC
Confidence 899999763
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.53 E-value=4e-14 Score=133.75 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
+..++|||+|||.++|+++|+++|++||.|..++|+.+..+ |+++|||||+|.+.++|..||+.|||..|. +..
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~A~~~l~g~~~~---~~~ 366 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIAT---GLSKGYAFCEYKDPSVTDVAIAALNGKDTG---DNK 366 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CCcCeEEEEEECCHHHHHHHHHHcCCCEEC---CeE
Confidence 34689999999999999999999999999999999988743 778889999999999999999999999995 567
Q ss_pred EEEEcCcc
Q 027473 210 LRSFFPNQ 217 (223)
Q Consensus 210 lrisfa~~ 217 (223)
|+|.||.+
T Consensus 367 l~v~~a~~ 374 (509)
T TIGR01642 367 LHVQRACV 374 (509)
T ss_pred EEEEECcc
Confidence 99999853
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.53 E-value=3.3e-14 Score=138.15 Aligned_cols=82 Identities=15% Similarity=0.276 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||++++|++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|+.|++.|||..|+ +..|
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~T---gkskGfAFVeF~s~e~A~~Ai~~lnG~~i~---GR~I 179 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT---GKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GRNI 179 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCC---CCcCCeEEEEeCcHHHHHHHHHhcCCeEEe---ccee
Confidence 3679999999999999999999999999999999999743 677889999999999999999999999995 5678
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|.++...
T Consensus 180 kV~rp~~~ 187 (612)
T TIGR01645 180 KVGRPSNM 187 (612)
T ss_pred eecccccc
Confidence 88876643
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.52 E-value=4.4e-14 Score=135.74 Aligned_cols=77 Identities=22% Similarity=0.398 Sum_probs=71.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEE
Q 027473 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSF 213 (223)
Q Consensus 134 tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lris 213 (223)
+|||+|||.++||++|+++|++||.|.+|+|.+++.+ ++++|||||+|.+.++|++|++.||+..|. +..|+|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t---~~s~G~afV~F~~~~~A~~Al~~ln~~~i~---gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVT---RRSLGYGYVNFQNPADAERALETMNFKRLG---GKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeeEEee
Confidence 7999999999999999999999999999999999843 567789999999999999999999999994 6789999
Q ss_pred cCc
Q 027473 214 FPN 216 (223)
Q Consensus 214 fa~ 216 (223)
|+.
T Consensus 76 ~s~ 78 (562)
T TIGR01628 76 WSQ 78 (562)
T ss_pred ccc
Confidence 975
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.3e-14 Score=133.77 Aligned_cols=83 Identities=25% Similarity=0.327 Sum_probs=76.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
..+|||+.|+..+||.||++||++||.|++|+|++|.. |.++||+||.|.+++.|..||++|||.........+|.
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~----~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD----GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheeccc----ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 67999999999999999999999999999999999986 45556999999999999999999999988777789999
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|.||+.+
T Consensus 200 VkFADtq 206 (510)
T KOG0144|consen 200 VKFADTQ 206 (510)
T ss_pred EEecccC
Confidence 9999854
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.51 E-value=1.3e-13 Score=96.74 Aligned_cols=66 Identities=23% Similarity=0.443 Sum_probs=59.2
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 135 LfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
|||+|||+++++++|.++|+.||.|..|++..++. |+++++|||+|.+.++|.+|++.++|..+++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~----~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD----GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec----cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 79999999999999999999999999999998864 5677899999999999999999999999853
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.49 E-value=1.1e-13 Score=133.13 Aligned_cols=81 Identities=16% Similarity=0.222 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+||+.++|+++|+++|++||.|++|+|+.+.. |+++|||||+|.+.++|++|++.|||..+. +..|
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~----g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~---gk~l 356 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK----GVSRGFGFVCFSNPEEANRAVTEMHGRMLG---GKPL 356 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC----CCcCCeEEEEeCCHHHHHHHHHHhcCCeeC---Ccee
Confidence 367899999999999999999999999999999999964 566779999999999999999999999994 6889
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|.||..+
T Consensus 357 ~V~~a~~k 364 (562)
T TIGR01628 357 YVALAQRK 364 (562)
T ss_pred EEEeccCc
Confidence 99999864
No 20
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.49 E-value=1.1e-13 Score=134.08 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
...++|||+|||.+++|++|+++|++||.|.+|+|+.|.+ |+++|||||+|.+.++|++||+.|||+.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~s----G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~ 125 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFS----GQNRGYAFVTFCGKEEAKEAVKLLNNYEIR 125 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCC----CCccceEEEEeCCHHHHHHHHHHcCCCeec
Confidence 4478999999999999999999999999999999999964 667779999999999999999999999985
No 21
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=8.6e-14 Score=128.47 Aligned_cols=84 Identities=21% Similarity=0.414 Sum_probs=75.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..-+|||+.+|..+||+||+++|++||.|.+|.|++||.+ |.+||||||.|.++++|.+|+.+|++.+.--.....|
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t---~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKST---GQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeeccccc---CcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 3669999999999999999999999999999999999954 6788899999999999999999999988655456789
Q ss_pred EEEcCcc
Q 027473 211 RSFFPNQ 217 (223)
Q Consensus 211 risfa~~ 217 (223)
.+.||+-
T Consensus 110 qvk~Ad~ 116 (510)
T KOG0144|consen 110 QVKYADG 116 (510)
T ss_pred eecccch
Confidence 9999873
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=8.6e-14 Score=121.91 Aligned_cols=86 Identities=20% Similarity=0.365 Sum_probs=78.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
+..+.|.|..||.++|++||+.||+..|+|++|+|++||.+ |++.||+||.|.++++|++|+..|||-.+. ..+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKit---GqSLGYGFVNYv~p~DAe~AintlNGLrLQ---~KT 112 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKIT---GQSLGYGFVNYVRPKDAEKAINTLNGLRLQ---NKT 112 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeecccc---ccccccceeeecChHHHHHHHhhhcceeec---cce
Confidence 34678999999999999999999999999999999999954 788889999999999999999999999994 578
Q ss_pred EEEEcCcchhhh
Q 027473 210 LRSFFPNQFFAA 221 (223)
Q Consensus 210 lrisfa~~~~~~ 221 (223)
|+||||++--++
T Consensus 113 IKVSyARPSs~~ 124 (360)
T KOG0145|consen 113 IKVSYARPSSDS 124 (360)
T ss_pred EEEEeccCChhh
Confidence 999999986554
No 23
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=7.2e-14 Score=115.98 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=69.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+||+.++++.||+.+|..||.|..|.|...+. | ||||||+++.+|+.|+..|+|..|+ +.-++
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP----G----fAFVEFed~RDA~DAvr~LDG~~~c---G~r~r 78 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP----G----FAFVEFEDPRDAEDAVRYLDGKDIC---GSRIR 78 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC----C----ceEEeccCcccHHHHHhhcCCcccc---CceEE
Confidence 68999999999999999999999999999998877542 4 9999999999999999999999996 46789
Q ss_pred EEcCcchh
Q 027473 212 SFFPNQFF 219 (223)
Q Consensus 212 isfa~~~~ 219 (223)
|++.+-.+
T Consensus 79 VE~S~G~~ 86 (195)
T KOG0107|consen 79 VELSTGRP 86 (195)
T ss_pred EEeecCCc
Confidence 98876554
No 24
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=2.7e-13 Score=92.35 Aligned_cols=71 Identities=30% Similarity=0.444 Sum_probs=62.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 134 tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
+|||+|||.++++++|+++|++||.|..+++..++ +.++|+|||+|.+.++|+.|++.|+|..+. +..|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~---~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLG---GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEEC---CEEEee
Confidence 58999999999999999999999999999998876 345569999999999999999999999884 344554
No 25
>PLN03213 repressor of silencing 3; Provisional
Probab=99.46 E-value=2e-13 Score=127.95 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCH--HHHHHHHHHhcCceecCCCCCc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP--AHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~--~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
..+||||||++++|+++|+.+|++||.|.+|.|++.. | +|||||+|.+. .++.+||+.|||..+. ++.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET-----G--RGFAFVEMssdddaEeeKAISaLNGAEWK---GR~ 79 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK-----G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWK---GGR 79 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc-----C--CceEEEEecCCcHHHHHHHHHHhcCCeec---Cce
Confidence 5699999999999999999999999999999999443 3 56999999987 7899999999999994 789
Q ss_pred EEEEcCcchhh
Q 027473 210 LRSFFPNQFFA 220 (223)
Q Consensus 210 lrisfa~~~~~ 220 (223)
|||+-|+..|-
T Consensus 80 LKVNKAKP~YL 90 (759)
T PLN03213 80 LRLEKAKEHYL 90 (759)
T ss_pred eEEeeccHHHH
Confidence 99999998873
No 26
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=9.9e-14 Score=119.60 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=58.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 196 (223)
-++||||||+|+++.|+|++.|++||+|+++.|+.|+.+ |++|||+||.|.+.+.|++|++-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t---~rskGyGfVTf~d~~aa~rAc~d 73 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNT---GRSKGYGFVTFRDAEAATRACKD 73 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCC---ccccceeeEEeecHHHHHHHhcC
Confidence 479999999999999999999999999999999999965 88999999999999999999974
No 27
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=4.1e-13 Score=111.89 Aligned_cols=79 Identities=30% Similarity=0.420 Sum_probs=72.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||.++|+++|.++|.+||.|..|++..++.. |+++|||||+|.+.++|..|++.|+|..+. +..|+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~---~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~---~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRET---GKSRGFAFVEFESEESAEKAIEELNGKELE---GRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecccc---CccCceEEEEecCHHHHHHHHHHcCCCeEC---CceeE
Confidence 589999999999999999999999999999999999722 677789999999999999999999999994 67899
Q ss_pred EEcCc
Q 027473 212 SFFPN 216 (223)
Q Consensus 212 isfa~ 216 (223)
|.++.
T Consensus 189 v~~~~ 193 (306)
T COG0724 189 VQKAQ 193 (306)
T ss_pred eeccc
Confidence 99853
No 28
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=5.1e-13 Score=102.69 Aligned_cols=82 Identities=21% Similarity=0.369 Sum_probs=71.3
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 125 VPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 125 ~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
..+|+..++.|||.|||+++|.||..+||.+||.|+.|||-..+.++ | -|||.|++..+|.+|++.|+|+.++
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~Tr--G----TAFVVYedi~dAk~A~dhlsg~n~~- 83 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETR--G----TAFVVYEDIFDAKKACDHLSGYNVD- 83 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcC--c----eEEEEehHhhhHHHHHHHhcccccC-
Confidence 45677789999999999999999999999999999999998887442 3 9999999999999999999999995
Q ss_pred CCCCcEEEEcC
Q 027473 205 AFLGSLRSFFP 215 (223)
Q Consensus 205 ~~~~~lrisfa 215 (223)
..-|.|-+-
T Consensus 84 --~ryl~vlyy 92 (124)
T KOG0114|consen 84 --NRYLVVLYY 92 (124)
T ss_pred --CceEEEEec
Confidence 455665553
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.45 E-value=4.1e-13 Score=125.44 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||. |+|..+. +..|
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~---~~skg~afVeF~~~e~A~~Al~-l~g~~~~---g~~i 160 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNS---RRSKGVAYVEFYDVESVIKALA-LTGQMLL---GRPI 160 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCC---CCcceEEEEEECCHHHHHHHHH-hCCCEEC---Ceee
Confidence 4789999999999999999999999999999999998743 6788899999999999999996 8999984 5677
Q ss_pred EEEcCc
Q 027473 211 RSFFPN 216 (223)
Q Consensus 211 risfa~ 216 (223)
.|.++.
T Consensus 161 ~v~~~~ 166 (457)
T TIGR01622 161 IVQSSQ 166 (457)
T ss_pred EEeecc
Confidence 777653
No 30
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.45 E-value=3.5e-13 Score=127.94 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCC--eeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG--YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~--i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
++.+|||+|||.++|+++|+++|++||. |+.|++..++.. ++++|||+|.+.++|.+||..|||+.|++..+.
T Consensus 393 ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-----~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~ 467 (481)
T TIGR01649 393 PSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-----RSKMGLLEWESVEDAVEALIALNHHQLNEPNGS 467 (481)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-----cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCC
Confidence 3789999999999999999999999998 888988766532 345999999999999999999999999754322
Q ss_pred ---cEEEEcCcch
Q 027473 209 ---SLRSFFPNQF 218 (223)
Q Consensus 209 ---~lrisfa~~~ 218 (223)
.|+|+|++.+
T Consensus 468 ~~~~lkv~fs~~~ 480 (481)
T TIGR01649 468 APYHLKVSFSTSR 480 (481)
T ss_pred ccceEEEEeccCC
Confidence 7999999864
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=5.2e-13 Score=116.16 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=65.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
..||||+||++.+||++|+++|+.||.|.+|+|+.+. +.++||||+|.++++|+.|+ .|+|..|. .+.|.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~------et~gfAfVtF~d~~aaetAl-lLnGa~l~---d~~I~ 74 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG------EYACTAYVTFKDAYALETAV-LLSGATIV---DQRVC 74 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC------CcceEEEEEECCHHHHHHHH-hcCCCeeC---CceEE
Confidence 5799999999999999999999999999999999984 33459999999999999999 79999995 45677
Q ss_pred EEcC
Q 027473 212 SFFP 215 (223)
Q Consensus 212 isfa 215 (223)
|.-+
T Consensus 75 It~~ 78 (243)
T PLN03121 75 ITRW 78 (243)
T ss_pred EEeC
Confidence 6653
No 32
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=2.5e-13 Score=119.33 Aligned_cols=84 Identities=15% Similarity=0.253 Sum_probs=78.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.-.+||+-|..+++.|+|++.|.+||+|.++||++|-.+ +|+|||+||.|.+.++|+.||+.|||.=| ....||
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T---~KsKGYgFVSf~~k~dAEnAI~~MnGqWl---G~R~IR 135 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNT---GKSKGYGFVSFPNKEDAENAIQQMNGQWL---GRRTIR 135 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccC---CcccceeEEeccchHHHHHHHHHhCCeee---ccceee
Confidence 457999999999999999999999999999999999865 78999999999999999999999999999 578999
Q ss_pred EEcCcchhhh
Q 027473 212 SFFPNQFFAA 221 (223)
Q Consensus 212 isfa~~~~~~ 221 (223)
-+||.-|+.-
T Consensus 136 TNWATRKp~e 145 (321)
T KOG0148|consen 136 TNWATRKPSE 145 (321)
T ss_pred ccccccCccc
Confidence 9999988743
No 33
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.3e-14 Score=119.74 Aligned_cols=78 Identities=15% Similarity=0.302 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+..|||||||++.||.||--+|++||+|+.|.|++|+.+ |++|||||+.|++..+..-|+..|||.+|. +.+||
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~T---GKSKGFaFLcYEDQRSTILAVDN~NGiki~---gRtir 108 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKT---GKSKGFAFLCYEDQRSTILAVDNLNGIKIL---GRTIR 108 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCC---CcccceEEEEecCccceEEEEeccCCceec---ceeEE
Confidence 679999999999999999999999999999999999965 999999999999999999999999999994 67888
Q ss_pred EEcC
Q 027473 212 SFFP 215 (223)
Q Consensus 212 isfa 215 (223)
|..-
T Consensus 109 VDHv 112 (219)
T KOG0126|consen 109 VDHV 112 (219)
T ss_pred eeec
Confidence 8643
No 34
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.43 E-value=4.9e-13 Score=129.49 Aligned_cols=73 Identities=19% Similarity=0.269 Sum_probs=67.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC--CCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~f--G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.++|||+||+.++||++|+++|++| |.|++|+++++ ||||+|.+.++|++|++.|||..|+ +..
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg-----------fAFVeF~s~e~A~kAi~~lnG~~i~---Gr~ 298 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD-----------YAFVHFEDREDAVKAMDELNGKELE---GSE 298 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC-----------eEEEEeCCHHHHHHHHHHhCCCEEC---CEE
Confidence 5789999999999999999999999 99999987643 9999999999999999999999994 689
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+.+
T Consensus 299 I~V~~Akp~ 307 (578)
T TIGR01648 299 IEVTLAKPV 307 (578)
T ss_pred EEEEEccCC
Confidence 999999865
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.42 E-value=8.4e-13 Score=125.37 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
++++|||+|||+ .+|+++|++||++||.|.+|+|+.++. | ||||+|.+.++|+.||+.|||..|. +..
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~----g----~afV~f~~~~~A~~Ai~~lng~~l~---g~~ 342 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKK----E----TALIEMADPYQAQLALTHLNGVKLF---GKP 342 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC----C----EEEEEECCHHHHHHHHHHhCCCEEC---Cce
Confidence 478999999998 699999999999999999999988741 3 9999999999999999999999994 689
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+|+++.
T Consensus 343 l~v~~s~~~ 351 (481)
T TIGR01649 343 LRVCPSKQQ 351 (481)
T ss_pred EEEEEcccc
Confidence 999999764
No 36
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.2e-12 Score=88.68 Aligned_cols=70 Identities=30% Similarity=0.431 Sum_probs=61.3
Q ss_pred EcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 137 VgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
|+|||..+++++|+++|++||.|.++++..++.. ++++|+|||+|.+.++|..|++.|++..+. +..|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~---~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~---~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDT---GKSKGFAFVEFESEEDAEKALEALNGKELD---GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCC---CCCCceEEEEeCCHHHHHHHHHHcCCCeeC---CcEEEe
Confidence 5799999999999999999999999999887632 567779999999999999999999999984 455555
No 37
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=5.9e-13 Score=124.94 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=76.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
+.+||||+|++++|++|.++|+..|.|.+++++.|+.+ |++|||+||+|.+.++|+.|++.|||+++ ++..|||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~t---G~~~G~~f~~~~~~~~~~~a~~~lNg~~~---~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRET---GKPKGFGFCEFTDEETAERAIRNLNGAEF---NGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccC---CCcCceeeEecCchhhHHHHHHhcCCccc---CCceEEe
Confidence 79999999999999999999999999999999999965 89999999999999999999999999999 6889999
Q ss_pred EcCcchh
Q 027473 213 FFPNQFF 219 (223)
Q Consensus 213 sfa~~~~ 219 (223)
.|+.+.-
T Consensus 93 ~~~~~~~ 99 (435)
T KOG0108|consen 93 NYASNRK 99 (435)
T ss_pred ecccccc
Confidence 9998653
No 38
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=5.4e-13 Score=111.95 Aligned_cols=76 Identities=26% Similarity=0.436 Sum_probs=67.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+++|||+|||.++.|.||++||.+||.|.+|.|...+ .+..||||+|+++.+|+.||..-+||.++ +.-||
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~------g~ppfafVeFEd~RDAeDAiygRdGYdyd---g~rLR 76 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP------GPPPFAFVEFEDPRDAEDAIYGRDGYDYD---GCRLR 76 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC------CCCCeeEEEecCccchhhhhhcccccccC---cceEE
Confidence 6899999999999999999999999999999885553 13349999999999999999999999996 57899
Q ss_pred EEcCc
Q 027473 212 SFFPN 216 (223)
Q Consensus 212 isfa~ 216 (223)
|+|+.
T Consensus 77 VEfpr 81 (241)
T KOG0105|consen 77 VEFPR 81 (241)
T ss_pred EEecc
Confidence 99985
No 39
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=2.2e-12 Score=114.56 Aligned_cols=73 Identities=22% Similarity=0.303 Sum_probs=68.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA 205 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (223)
|+-+||||+-|+.+++|.+|+..|+.||.|+.|+||.++.+ |++||||||+|+++.+...|.+..+|.+|++.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vT---gkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVT---GKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeeccc---CCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 56899999999999999999999999999999999999854 89999999999999999999999999999753
No 40
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.5e-12 Score=116.84 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=71.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 129 ~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
++..+.|+|.|+||...|-||+.+|.+||.|.+|.|+.++. -+|||+||.|++.++|++|-++|||..|. +.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER-----GSKGFGFVTmen~~dadRARa~LHgt~VE---GR 164 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER-----GSKGFGFVTMENPADADRARAELHGTVVE---GR 164 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC-----CCCccceEEecChhhHHHHHHHhhcceee---ce
Confidence 34468999999999999999999999999999999999873 26679999999999999999999999994 56
Q ss_pred cEEEEcCcch
Q 027473 209 SLRSFFPNQF 218 (223)
Q Consensus 209 ~lrisfa~~~ 218 (223)
.|-|+-|.++
T Consensus 165 kIEVn~ATar 174 (376)
T KOG0125|consen 165 KIEVNNATAR 174 (376)
T ss_pred EEEEeccchh
Confidence 6777766654
No 41
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=3e-12 Score=118.74 Aligned_cols=84 Identities=24% Similarity=0.271 Sum_probs=73.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~-~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
..+-||||.||.++.|+||..||++.|.|-++||+.|+ + |+.+|||||.|-+.+.|++||+.||++.|.-...-+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~s----G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFS----GDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccC----CCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 38899999999999999999999999999999999997 4 677789999999999999999999999997433345
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
+.||-+|.+
T Consensus 158 vc~Svan~R 166 (506)
T KOG0117|consen 158 VCVSVANCR 166 (506)
T ss_pred EEEeeecce
Confidence 566777654
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=9.7e-12 Score=85.00 Aligned_cols=74 Identities=30% Similarity=0.435 Sum_probs=64.7
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEE
Q 027473 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSF 213 (223)
Q Consensus 134 tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lris 213 (223)
+|+|+|||..+++++|+++|+.||.|..+.+..++.. +++|+|||+|.+.++|..|++.+++..+. +..+.|+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~----~~~~~~~v~f~s~~~a~~a~~~~~~~~~~---~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT----KSKGFAFVEFEDEEDAEKALEALNGKELG---GRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC----CcceEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEe
Confidence 5899999999999999999999999999999987643 44569999999999999999999999884 4666665
Q ss_pred c
Q 027473 214 F 214 (223)
Q Consensus 214 f 214 (223)
|
T Consensus 74 ~ 74 (74)
T cd00590 74 F 74 (74)
T ss_pred C
Confidence 4
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.9e-12 Score=113.85 Aligned_cols=82 Identities=29% Similarity=0.368 Sum_probs=76.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++||||-|....+|||++.+|++||.|.+|.+.+... |.+|||+||.|.+..+|+.||.+|+|....-.....|.
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d----g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD----GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC----CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 67999999999999999999999999999999999875 67778999999999999999999999998766788999
Q ss_pred EEcCcc
Q 027473 212 SFFPNQ 217 (223)
Q Consensus 212 isfa~~ 217 (223)
|+||+-
T Consensus 95 VK~ADT 100 (371)
T KOG0146|consen 95 VKFADT 100 (371)
T ss_pred EEeccc
Confidence 999974
No 44
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=7.8e-13 Score=113.56 Aligned_cols=81 Identities=25% Similarity=0.432 Sum_probs=74.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC--CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCC
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE--SRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFL 207 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~--~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~ 207 (223)
...+|||||+|..++||.-|...|-+||.|+.|.++.|- .+||+ |+||+|+-.|+|.+||..||+..| -+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRg-----FgFVefe~aEDAaaAiDNMnesEL---~G 79 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRG-----FGFVEFEEAEDAAAAIDNMNESEL---FG 79 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccc-----eeEEEeeccchhHHHhhcCchhhh---cc
Confidence 347899999999999999999999999999999999998 55553 999999999999999999999999 47
Q ss_pred CcEEEEcCcch
Q 027473 208 GSLRSFFPNQF 218 (223)
Q Consensus 208 ~~lrisfa~~~ 218 (223)
.+|||+||++.
T Consensus 80 rtirVN~AkP~ 90 (298)
T KOG0111|consen 80 RTIRVNLAKPE 90 (298)
T ss_pred eeEEEeecCCc
Confidence 89999999864
No 45
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=2.8e-12 Score=102.87 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
...+|||.++..++||++|.+.|..||+|+.+.|..|+.+ |=.|||+.|+|++.++|++|+++|||..| .++.|
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRt---Gy~KGYaLvEYet~keAq~A~~~~Ng~~l---l~q~v 144 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRT---GYVKGYALVEYETLKEAQAAIDALNGAEL---LGQNV 144 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeecccccc---ccccceeeeehHhHHHHHHHHHhccchhh---hCCce
Confidence 3789999999999999999999999999999999999733 78889999999999999999999999998 46788
Q ss_pred EEEcC
Q 027473 211 RSFFP 215 (223)
Q Consensus 211 risfa 215 (223)
.|.|+
T Consensus 145 ~VDw~ 149 (170)
T KOG0130|consen 145 SVDWC 149 (170)
T ss_pred eEEEE
Confidence 88886
No 46
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.29 E-value=2.6e-12 Score=121.47 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=102.6
Q ss_pred CCCCCCCcccccchhhhhccCC--CccCCCCCCCC-CCCCCCCCCCCCCCCccccCC-CCC----CCCCCCCCCCCCCCC
Q 027473 51 LRGMRDTDSLGASYDRYLRSAQ--ISSYSGGQSAR-HMSGGMPSRPVDDPRIVGIGG-MDP----GPSAKDRALGLGGGR 122 (223)
Q Consensus 51 ~~~~~~~~~i~~~~d~~~~~~~--~~~~~~~~~~r-~~~g~~~G~~~~~~~~~~~g~-~~~----~~~~~~~~~g~~~~~ 122 (223)
.-.|+|...|++-.. .+++| ++.|-+.+.-. ++ .+.|.-+.+-++|.--. +.. ..++.-.+.++.
T Consensus 203 ~gkVrdVriI~Dr~s--~rskgi~Yvef~D~~sVp~ai--aLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~--- 275 (549)
T KOG0147|consen 203 VGKVRDVRIIGDRNS--RRSKGIAYVEFCDEQSVPLAI--ALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFT--- 275 (549)
T ss_pred hcCcceeEeeccccc--hhhcceeEEEEecccchhhHh--hhcCCcccCceeEecccHHHHHHHHhccccccccccc---
Confidence 347889999984444 37777 56777666554 33 47776666656665321 000 001100111111
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCcee
Q 027473 123 SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 123 p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
.+-..|||+||.+++||++|+.+|++||.|..|.+..+..+ |.+|||+||+|.+.++|.+|++.|||..|
T Consensus 276 -------~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~t---G~skgfGfi~f~~~~~ar~a~e~lngfel 345 (549)
T KOG0147|consen 276 -------GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSET---GRSKGFGFITFVNKEDARKALEQLNGFEL 345 (549)
T ss_pred -------cchhhhhhcccccCchHHHHhhhccCcccceeeeecccccc---ccccCcceEEEecHHHHHHHHHHhcccee
Confidence 11234999999999999999999999999999999998633 88889999999999999999999999888
Q ss_pred cCCCCCcEEEEcC
Q 027473 203 HQAFLGSLRSFFP 215 (223)
Q Consensus 203 ~~~~~~~lrisfa 215 (223)
.+..|+|+--
T Consensus 346 ---AGr~ikV~~v 355 (549)
T KOG0147|consen 346 ---AGRLIKVSVV 355 (549)
T ss_pred ---cCceEEEEEe
Confidence 5777887653
No 47
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.28 E-value=5.4e-12 Score=107.46 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=71.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
..+|-|-||.+-+|.++|+.+|++||.|-+|.|+.|+-+ ++++|||||-|.+..+|+.|+++|+|.+|+ +.-|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~T---r~sRgFaFVrf~~k~daedA~damDG~~ld---gRelr 86 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYT---RQSRGFAFVRFHDKRDAEDALDAMDGAVLD---GRELR 86 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceeccccccc---ccccceeEEEeeecchHHHHHHhhcceeec---cceee
Confidence 679999999999999999999999999999999999832 456669999999999999999999999996 46788
Q ss_pred EEcCc
Q 027473 212 SFFPN 216 (223)
Q Consensus 212 isfa~ 216 (223)
|.+|+
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 88875
No 48
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.26 E-value=8.3e-12 Score=104.33 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=71.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
+...||||+||+..+|++-|++||-+.|.|+.++++.++.+ .+.+|||||||.++++|+-|++.||..+|- +.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~---~~~qGygF~Ef~~eedadYAikiln~VkLY---grp 80 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVT---QKHQGYGFAEFRTEEDADYAIKILNMVKLY---GRP 80 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhc---ccccceeEEEEechhhhHHHHHHHHHHHhc---Cce
Confidence 44679999999999999999999999999999999999933 233449999999999999999999988884 578
Q ss_pred EEEEcCc
Q 027473 210 LRSFFPN 216 (223)
Q Consensus 210 lrisfa~ 216 (223)
||++-|.
T Consensus 81 Irv~kas 87 (203)
T KOG0131|consen 81 IRVNKAS 87 (203)
T ss_pred eEEEecc
Confidence 8887766
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.5e-11 Score=114.19 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=68.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
-+.|||.||+.++|||.|+++|++||.|..|+.++| ||||.|.++++|.+||+.|||+.|+ +..|-
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~davkAm~~~ngkeld---G~~iE 324 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAEREDAVKAMKETNGKELD---GSPIE 324 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchHHHHHHHHHhcCceec---CceEE
Confidence 478999999999999999999999999999998876 9999999999999999999999995 57799
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|.+|++.
T Consensus 325 vtLAKP~ 331 (506)
T KOG0117|consen 325 VTLAKPV 331 (506)
T ss_pred EEecCCh
Confidence 9999864
No 50
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.21 E-value=6e-11 Score=80.35 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=49.4
Q ss_pred HHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcC
Q 027473 149 VAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFP 215 (223)
Q Consensus 149 L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa 215 (223)
|.++|++||.|.++++..++ + + +|||+|.+.++|+.|++.|||..+ .+..|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~-~----~a~V~f~~~~~A~~a~~~l~~~~~---~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---R-G----FAFVEFASVEDAQKAIEQLNGRQF---NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---T-T----EEEEEESSHHHHHHHHHHHTTSEE---TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---C-C----EEEEEECCHHHHHHHHHHhCCCEE---CCcEEEEEEC
Confidence 68999999999999998775 1 3 999999999999999999999999 4678999986
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=3.9e-11 Score=113.74 Aligned_cols=173 Identities=10% Similarity=0.074 Sum_probs=113.9
Q ss_pred CccccccccccccccccCCCCCCCcccccchhhhhccC--CCccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 027473 34 SGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSA--QISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPS 110 (223)
Q Consensus 34 ~~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~~~~~--~~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~ 110 (223)
+.+.+++|=+-+-|- -.-.|+.+-+|+ +..+.++- +|++|.-. +.-||+. ...+..+.++.+..--. .....
T Consensus 13 lp~~~~~~qL~e~FS-~vGPik~~~vVt--~~gs~~~RGfgfVtFam~ED~qrA~~-e~~~~kf~Gr~l~v~~A-~~R~r 87 (678)
T KOG0127|consen 13 LPFSSTGEQLEEFFS-YVGPIKHAVVVT--NKGSSEKRGFGFVTFAMEEDVQRALA-ETEQSKFEGRILNVDPA-KKRAR 87 (678)
T ss_pred CCCccchhHHHHhhh-cccCcceeEEec--CCCcccccCccceeeehHhHHHHHHH-HhhcCcccceecccccc-ccccc
Confidence 555666666655332 234566777776 33333333 46788764 5557776 66666666655443211 11111
Q ss_pred CCCCCCCC--------CCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEE
Q 027473 111 AKDRALGL--------GGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFV 182 (223)
Q Consensus 111 ~~~~~~g~--------~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFV 182 (223)
+....-+- ...+|....-..+...|.|.||||.|.+.+|+.+|+.||.|.+|.|++.+. |+..|||||
T Consensus 88 ~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d----gklcGFaFV 163 (678)
T KOG0127|consen 88 SEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD----GKLCGFAFV 163 (678)
T ss_pred chhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC----CCccceEEE
Confidence 11000010 001111111112367999999999999999999999999999999997764 555589999
Q ss_pred EecCHHHHHHHHHHhcCceecCCCCCcEEEEcCcch
Q 027473 183 DFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPNQF 218 (223)
Q Consensus 183 eF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~~~ 218 (223)
.|....+|..||+.+||.+|+ +.+|-|.||=++
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~---gR~VAVDWAV~K 196 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKID---GRPVAVDWAVDK 196 (678)
T ss_pred EEeeHHHHHHHHHhccCceec---CceeEEeeeccc
Confidence 999999999999999999995 689999999665
No 52
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.5e-11 Score=112.26 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=98.7
Q ss_pred cccccccccccccc-----cCCCCCCCcccccchhhhhccCCCccCCC-CCCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 027473 36 HELSSYYTRDDDRG-----ALRGMRDTDSLGASYDRYLRSAQISSYSG-GQSARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (223)
Q Consensus 36 ~~~~~y~~~~~~r~-----~~~~~~~~~~i~~~~d~~~~~~~~~~~~~-~~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~ 109 (223)
++||.=++-|-|.. .-+.+||+ + +.-+.| +-|.. .++.+||. .||...+.+..+..+ ...
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~y------vnf~~~~da~~A~~-~~n~~~~~~~~~rim-~s~--- 73 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAY------VNFQQPADAERALD-TMNFDVLKGKPIRIM-WSQ--- 73 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEE------EecCCHHHHHHHHH-HcCCcccCCcEEEee-hhc---
Confidence 66777666665532 22445555 3 333433 33444 47778998 899888887654332 111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHH
Q 027473 110 SAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (223)
Q Consensus 110 ~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~ 189 (223)
.+ ...|||.||+.+++.++|.++|+.||.|.+|++.+++. | +||| ||+|+++++
T Consensus 74 -------------------rd-~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~----g-~kg~-FV~f~~e~~ 127 (369)
T KOG0123|consen 74 -------------------RD-PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN----G-SKGY-FVQFESEES 127 (369)
T ss_pred -------------------cC-CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC----C-ceee-EEEeCCHHH
Confidence 01 11399999999999999999999999999999999986 3 6779 999999999
Q ss_pred HHHHHHHhcCceecCCCCCcEEEEc
Q 027473 190 AATAMDALQVMLTHQAFLGSLRSFF 214 (223)
Q Consensus 190 A~~Al~~LnG~~l~~~~~~~lrisf 214 (223)
|.+|++.|||..+. +..|-|.-
T Consensus 128 a~~ai~~~ng~ll~---~kki~vg~ 149 (369)
T KOG0123|consen 128 AKKAIEKLNGMLLN---GKKIYVGL 149 (369)
T ss_pred HHHHHHHhcCcccC---CCeeEEee
Confidence 99999999999885 44454443
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=1.7e-11 Score=108.75 Aligned_cols=72 Identities=19% Similarity=0.279 Sum_probs=66.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
.+|||||||.++++.+|+.||++||.|.+|.|+++ |+||..++...|+.||..|+||.|+ +-.|.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLh---g~nInV 68 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLH---GVNINV 68 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceec---ceEEEE
Confidence 38999999999999999999999999999999987 9999999999999999999999996 456888
Q ss_pred EcCcch
Q 027473 213 FFPNQF 218 (223)
Q Consensus 213 sfa~~~ 218 (223)
+=++.|
T Consensus 69 eaSksK 74 (346)
T KOG0109|consen 69 EASKSK 74 (346)
T ss_pred Eecccc
Confidence 877776
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.15 E-value=2.7e-10 Score=98.21 Aligned_cols=86 Identities=31% Similarity=0.409 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCC
Q 027473 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFL 207 (223)
Q Consensus 129 ~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~-~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~ 207 (223)
++.-+||||.+||.++.-.||+.||..|-.++.+.|.... .+ --+|.++||.|.+...|.+|+++|||..+|-...
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~---~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGD---QVCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCC---ccccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 3457999999999999999999999999998877554332 11 1255699999999999999999999999998899
Q ss_pred CcEEEEcCcc
Q 027473 208 GSLRSFFPNQ 217 (223)
Q Consensus 208 ~~lrisfa~~ 217 (223)
++|||++|+-
T Consensus 108 stLhiElAKS 117 (284)
T KOG1457|consen 108 STLHIELAKS 117 (284)
T ss_pred ceeEeeehhc
Confidence 9999999974
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.5e-10 Score=109.78 Aligned_cols=81 Identities=23% Similarity=0.302 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHh-----cC-ceecC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL-----QV-MLTHQ 204 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L-----nG-~~l~~ 204 (223)
...||||.|||+++||++|.+.|++||.|..+.|+.++.+ |.++|+|||.|.+...|..||++. .| +.|+
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T---~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~- 366 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDT---GHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD- 366 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCC---CCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe-
Confidence 3589999999999999999999999999999999999954 667779999999999999999877 33 5554
Q ss_pred CCCCcEEEEcCcc
Q 027473 205 AFLGSLRSFFPNQ 217 (223)
Q Consensus 205 ~~~~~lrisfa~~ 217 (223)
+..|.|-.|=.
T Consensus 367 --GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 367 --GRLLKVTLAVT 377 (678)
T ss_pred --ccEEeeeeccc
Confidence 45666665543
No 56
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.11 E-value=1.2e-10 Score=113.99 Aligned_cols=76 Identities=21% Similarity=0.398 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
-++|||||+|+.+++|.||..+|+.||+|.+|.|+..+ | ||||....+.+|.+|+.+|..+.+ ....|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R-----~----cAfI~M~~RqdA~kalqkl~n~kv---~~k~I 487 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR-----G----CAFIKMVRRQDAEKALQKLSNVKV---ADKTI 487 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC-----c----eeEEEEeehhHHHHHHHHHhcccc---cceee
Confidence 47899999999999999999999999999999998886 4 999999999999999999999988 57889
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|.||-.|
T Consensus 488 ki~Wa~g~ 495 (894)
T KOG0132|consen 488 KIAWAVGK 495 (894)
T ss_pred EEeeeccC
Confidence 99999654
No 57
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.11 E-value=2.5e-10 Score=107.91 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=58.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCC------------CCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPF------------VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~f------------G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 198 (223)
..++|||+|||+++|+++|+++|.++ +.|..+.+..+ +|||||+|.+.++|+.|| +||
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~---------kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE---------KNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC---------CCEEEEEeCCHHHHhhhh-cCC
Confidence 46899999999999999999999974 34444544333 349999999999999999 599
Q ss_pred CceecCCCCCcEEEEcCc
Q 027473 199 VMLTHQAFLGSLRSFFPN 216 (223)
Q Consensus 199 G~~l~~~~~~~lrisfa~ 216 (223)
|..+. +..|+|..++
T Consensus 244 g~~~~---g~~l~v~r~~ 258 (509)
T TIGR01642 244 SIIYS---NVFLKIRRPH 258 (509)
T ss_pred CeEee---CceeEecCcc
Confidence 99985 4778887543
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1e-10 Score=103.03 Aligned_cols=82 Identities=21% Similarity=0.354 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.+.|||-.||.+..+.||..+|-+||.|++.++..|+.+ ..+|.|+||.|+++.+|++||.+|||+.|. -..|
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRAT---NQSKCFGFVSfDNp~SaQaAIqAMNGFQIG---MKRL 357 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRAT---NQSKCFGFVSFDNPASAQAAIQAMNGFQIG---MKRL 357 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcc---ccccceeeEecCCchhHHHHHHHhcchhhh---hhhh
Confidence 3899999999999999999999999999999999999954 467889999999999999999999999994 4556
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|...++|
T Consensus 358 KVQLKRPk 365 (371)
T KOG0146|consen 358 KVQLKRPK 365 (371)
T ss_pred hhhhcCcc
Confidence 66555444
No 59
>smart00361 RRM_1 RNA recognition motif.
Probab=99.08 E-value=5.5e-10 Score=79.38 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=50.6
Q ss_pred HHHHHHhhc----CCCCeeEEE-EeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 146 RREVAHIFR----PFVGYKEVR-LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 146 eeeL~~lF~----~fG~i~~vr-l~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
+++|+++|+ +||.|.+|. |+.++... .|.++||+||+|.+.++|.+|++.|||..++ +..|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~-~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~---gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGY-ENHKRGNVYITFERSEDAARAIVDLNGRYFD---GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCC-CCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEe
Confidence 678899998 999999995 66665221 1556789999999999999999999999995 445544
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.04 E-value=5.3e-10 Score=96.04 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=68.4
Q ss_pred CCEEEEcCCCCCCCHHHHHH----hhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCC
Q 027473 132 SSTLFVEGLPSDCSRREVAH----IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFL 207 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~----lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~ 207 (223)
+.||||.||+..+..++|+. ||++||.|.+|...... +..|-|||.|.+.+.|..|+.+|+|+.+ -+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~------KmRGQA~VvFk~~~~As~A~r~l~gfpF---yg 79 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP------KMRGQAFVVFKETEAASAALRALQGFPF---YG 79 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC------CccCceEEEecChhHHHHHHHHhcCCcc---cC
Confidence 55999999999999999988 99999999998776553 3344999999999999999999999998 46
Q ss_pred CcEEEEcCcch
Q 027473 208 GSLRSFFPNQF 218 (223)
Q Consensus 208 ~~lrisfa~~~ 218 (223)
..|||.||+.+
T Consensus 80 K~mriqyA~s~ 90 (221)
T KOG4206|consen 80 KPMRIQYAKSD 90 (221)
T ss_pred chhheecccCc
Confidence 88999999754
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=2.2e-10 Score=104.51 Aligned_cols=82 Identities=15% Similarity=0.264 Sum_probs=72.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
-+.+|||.+.++..|+.|+..|.+||.|+++.+-.|.-+ |+.|||+||||+-+|.|+-|++.|||..+. +..|+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T---~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG---GRNiK 186 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPAT---GKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GRNIK 186 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeeccccccc---ccccceEEEEEeCcHHHHHHHHHhcccccc---Ccccc
Confidence 489999999999999999999999999999999999843 666779999999999999999999999994 56677
Q ss_pred EEcCcchh
Q 027473 212 SFFPNQFF 219 (223)
Q Consensus 212 isfa~~~~ 219 (223)
|..+.+-+
T Consensus 187 VgrPsNmp 194 (544)
T KOG0124|consen 187 VGRPSNMP 194 (544)
T ss_pred ccCCCCCc
Confidence 77665543
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.01 E-value=2e-09 Score=100.11 Aligned_cols=72 Identities=17% Similarity=0.231 Sum_probs=63.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||.|||+++|++.|++-|..||.|..+.|+.. |+.|| .|.|.++++|+.|+..|+|..|+ +.-|+
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~------GkskG--VVrF~s~edAEra~a~Mngs~l~---Gr~I~ 604 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN------GKSKG--VVRFFSPEDAERACALMNGSRLD---GRNIK 604 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhcc------CCccc--eEEecCHHHHHHHHHHhccCccc---Cceee
Confidence 789999999999999999999999999999888544 66666 89999999999999999999995 56677
Q ss_pred EEc
Q 027473 212 SFF 214 (223)
Q Consensus 212 isf 214 (223)
|.|
T Consensus 605 V~y 607 (608)
T KOG4212|consen 605 VTY 607 (608)
T ss_pred eee
Confidence 665
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=3.6e-10 Score=103.16 Aligned_cols=184 Identities=13% Similarity=0.059 Sum_probs=122.8
Q ss_pred CCCCCCCCCCCCccccccccccc--cccccCCCCCCCcccccchhhhh-ccCC--CccCCCCCCCC-CCCCCCCCCCCCC
Q 027473 23 SKRPRTDYDVPSGHELSSYYTRD--DDRGALRGMRDTDSLGASYDRYL-RSAQ--ISSYSGGQSAR-HMSGGMPSRPVDD 96 (223)
Q Consensus 23 ~kr~~~d~~~~~~~~~~~y~~~~--~~r~~~~~~~~~~~i~~~~d~~~-~~~~--~~~~~~~~~~r-~~~g~~~G~~~~~ 96 (223)
..|.++--.||-.+....|+.-. +-|..|..+..+|+|..++|--+ .-|+ |+.|--.|++. +.. .|||.-+.+
T Consensus 104 ~qrqqALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlE-qMNg~mlGG 182 (544)
T KOG0124|consen 104 MQRQQALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALE-QMNGQMLGG 182 (544)
T ss_pred HHHHHHHHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHH-HhccccccC
Confidence 34444433445555555555443 44888999999999999999765 3344 34443345553 444 677766555
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCC
Q 027473 97 PRIVGIGGMDPGPSAKDRALGLGGGRSEV-PLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGD 175 (223)
Q Consensus 97 ~~~~~~g~~~~~~~~~~~~~g~~~~~p~~-~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~ 175 (223)
|.+-.+- -.+++-....-+. ......-+.|||..+.++.+|+||+.+|+-||+|+.|.|.++.+. +.
T Consensus 183 RNiKVgr---------PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~---~~ 250 (544)
T KOG0124|consen 183 RNIKVGR---------PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG---RG 250 (544)
T ss_pred ccccccC---------CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCC---CC
Confidence 4432210 0111110000000 000013579999999999999999999999999999999999853 45
Q ss_pred CceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCcchhhhc
Q 027473 176 PLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPNQFFAAL 222 (223)
Q Consensus 176 ~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~~~~~~~ 222 (223)
.|||+|+||.+..+..+||..||=+.| +++-|||.-+--++-||
T Consensus 251 HkGyGfiEy~n~qs~~eAiasMNlFDL---GGQyLRVGk~vTPP~aL 294 (544)
T KOG0124|consen 251 HKGYGFIEYNNLQSQSEAIASMNLFDL---GGQYLRVGKCVTPPDAL 294 (544)
T ss_pred ccceeeEEeccccchHHHhhhcchhhc---ccceEecccccCCCchh
Confidence 677999999999999999999987777 57888887666555554
No 64
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=4.1e-10 Score=109.27 Aligned_cols=128 Identities=22% Similarity=0.326 Sum_probs=91.1
Q ss_pred CccCCCCCCC-CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHH
Q 027473 73 ISSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (223)
Q Consensus 73 ~~~~~~~~~~-r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~ 151 (223)
|+-|-..+.+ .++. -|+|.-++++.+..-=.- .......| ....+....++|+|.|||+..+-++|+.
T Consensus 564 FVEF~~~e~A~~a~k-~lqgtvldGH~l~lk~S~----~k~~~~~g------K~~~~kk~~tKIlVRNipFeAt~rEVr~ 632 (725)
T KOG0110|consen 564 FVEFAKPESAQAALK-ALQGTVLDGHKLELKISE----NKPASTVG------KKKSKKKKGTKILVRNIPFEATKREVRK 632 (725)
T ss_pred EEEecCHHHHHHHHH-HhcCceecCceEEEEecc----Cccccccc------cccccccccceeeeeccchHHHHHHHHH
Confidence 4566665444 4555 678888887765442110 00011111 1111222368999999999999999999
Q ss_pred hhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCcc
Q 027473 152 IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPNQ 217 (223)
Q Consensus 152 lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~~ 217 (223)
||..||.|++|||+....+ +...|||||+|.++.+|..|+++|.+++| -+.-|.|+||+.
T Consensus 633 LF~aFGqlksvRlPKK~~k---~a~rGF~Fv~f~t~~ea~nA~~al~STHl---yGRrLVLEwA~~ 692 (725)
T KOG0110|consen 633 LFTAFGQLKSVRLPKKIGK---GAHRGFGFVDFLTPREAKNAFDALGSTHL---YGRRLVLEWAKS 692 (725)
T ss_pred HHhcccceeeeccchhhcc---hhhccceeeeccCcHHHHHHHHhhcccce---echhhheehhcc
Confidence 9999999999999988422 22334999999999999999999999888 467899999975
No 65
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=9.8e-10 Score=99.98 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=71.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.+.|||.-|++-+|.++|+-||+.||.|++|.|++|+.+ |.+.-||||+|++.+++++|.-+|++..|++ .-|.
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~kt---gdsLqyaFiEFen~escE~AyFKMdNvLIDD---rRIH 312 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKT---GDSLQYAFIEFENKESCEQAYFKMDNVLIDD---RRIH 312 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccc---cchhheeeeeecchhhHHHHHhhhcceeecc---ceEE
Confidence 789999999999999999999999999999999999854 8888899999999999999999999999975 5577
Q ss_pred EEcC
Q 027473 212 SFFP 215 (223)
Q Consensus 212 isfa 215 (223)
|.|+
T Consensus 313 VDFS 316 (479)
T KOG0415|consen 313 VDFS 316 (479)
T ss_pred eehh
Confidence 7764
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.97 E-value=2.3e-09 Score=99.77 Aligned_cols=75 Identities=20% Similarity=0.276 Sum_probs=66.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhc-CCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFR-PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~-~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
.+.+||.|+|+++.+++|++||. +.|+|..|.|+.|.+ ||++|||.|||.++|.+++|++.||-+.+ ++..|
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~----GK~rGcavVEFk~~E~~qKa~E~lnk~~~---~GR~l 116 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES----GKARGCAVVEFKDPENVQKALEKLNKYEV---NGREL 116 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC----CCcCCceEEEeeCHHHHHHHHHHhhhccc---cCceE
Confidence 56799999999999999999998 569999999999986 67778999999999999999999999998 45666
Q ss_pred EEE
Q 027473 211 RSF 213 (223)
Q Consensus 211 ris 213 (223)
.|+
T Consensus 117 ~vK 119 (608)
T KOG4212|consen 117 VVK 119 (608)
T ss_pred EEe
Confidence 654
No 67
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=1.5e-09 Score=105.49 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=70.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
++|||.||++++|.++|..+|...|.|.++.|...+.....=.+.||+||+|.+.++|+.|+++|||+.|+++ .|.|
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH---~l~l 592 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH---KLEL 592 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc---eEEE
Confidence 4499999999999999999999999999999988773321234668999999999999999999999999764 4667
Q ss_pred EcCcchhh
Q 027473 213 FFPNQFFA 220 (223)
Q Consensus 213 sfa~~~~~ 220 (223)
+++..+.+
T Consensus 593 k~S~~k~~ 600 (725)
T KOG0110|consen 593 KISENKPA 600 (725)
T ss_pred EeccCccc
Confidence 76664443
No 68
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.96 E-value=8.3e-10 Score=92.42 Aligned_cols=80 Identities=14% Similarity=0.258 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE-EEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v-rl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+..|||+||.+++.|..|.++|+.||.+... .++++..+ |+++||+||.|.+.+.+.+|+..|||..++ ...+
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~t---g~~~~~g~i~~~sfeasd~ai~s~ngq~l~---nr~i 169 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDT---GNPKGFGFINYASFEASDAAIGSMNGQYLC---NRPI 169 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccC---CCCCCCeEEechhHHHHHHHHHHhccchhc---CCce
Confidence 5699999999999999999999999998653 66777643 677889999999999999999999999984 6788
Q ss_pred EEEcCcc
Q 027473 211 RSFFPNQ 217 (223)
Q Consensus 211 risfa~~ 217 (223)
++++|.-
T Consensus 170 tv~ya~k 176 (203)
T KOG0131|consen 170 TVSYAFK 176 (203)
T ss_pred EEEEEEe
Confidence 8888764
No 69
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.88 E-value=1.4e-09 Score=93.74 Aligned_cols=76 Identities=28% Similarity=0.502 Sum_probs=66.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
...||||.||..+|||++|+.+|+.|..+..++|-..- |.+ .|||+|++.+.|..||..|+|..|..+..++|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-----g~~--vaf~~~~~~~~at~am~~lqg~~~s~~drgg~ 281 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-----GMP--VAFADFEEIEQATDAMNHLQGNLLSSSDRGGM 281 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-----Ccc--eEeecHHHHHHHHHHHHHhhcceeccccCCCc
Confidence 45799999999999999999999999998877775442 443 89999999999999999999999988888889
Q ss_pred EEE
Q 027473 211 RSF 213 (223)
Q Consensus 211 ris 213 (223)
+|+
T Consensus 282 ~ie 284 (284)
T KOG1457|consen 282 HIE 284 (284)
T ss_pred ccC
Confidence 884
No 70
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.86 E-value=6.1e-09 Score=88.58 Aligned_cols=71 Identities=23% Similarity=0.370 Sum_probs=63.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC-CCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA 205 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~f-G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (223)
..-+||..+|+-+-|.++...|.+| |.+..+|+-+.+.+ |.+||||||+|++++.|+.|-+.||+|.+.++
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrT---GNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRT---GNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccccc---CCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 5689999999999999999999999 77778888777633 88899999999999999999999999998653
No 71
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.84 E-value=3e-09 Score=94.66 Aligned_cols=72 Identities=21% Similarity=0.323 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
.+++|+|+||.+.|+.+||+..|++||.|.+|.|+++ |+||.|+-.++|..|++.|+|..+++ +.|
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~g---k~m 142 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQG---KRM 142 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhccccccccc---cee
Confidence 3789999999999999999999999999999999987 99999999999999999999999964 556
Q ss_pred EEEcCc
Q 027473 211 RSFFPN 216 (223)
Q Consensus 211 risfa~ 216 (223)
+|....
T Consensus 143 ~vq~st 148 (346)
T KOG0109|consen 143 HVQLST 148 (346)
T ss_pred eeeeec
Confidence 555443
No 72
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=9.9e-09 Score=93.05 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=65.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC-ceecCCCCCc
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV-MLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG-~~l~~~~~~~ 209 (223)
..+||||++|-..++|.+|++.|.+||+|+++++...+ + ||||+|.+++.|+.|.+.+-. ..| .+.-
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~-----~----CAFv~ftTR~aAE~Aae~~~n~lvI---~G~R 294 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK-----G----CAFVTFTTREAAEKAAEKSFNKLVI---NGFR 294 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc-----c----cceeeehhhHHHHHHHHhhcceeee---cceE
Confidence 46899999999999999999999999999999998876 4 999999999999998765544 344 4678
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|.|.|...+
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999883
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=2.1e-08 Score=92.84 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=68.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
..|||| +++||..|.++|+++|.|.+|||.+|- + +.|||||.|.++++|++||+.||...+ .+..+||
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-----slgy~yvnf~~~~da~~A~~~~n~~~~---~~~~~ri 69 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-----SLGYAYVNFQQPADAERALDTMNFDVL---KGKPIRI 69 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-----ccceEEEecCCHHHHHHHHHHcCCccc---CCcEEEe
Confidence 479999 999999999999999999999999997 4 456999999999999999999999999 4789999
Q ss_pred EcCcchhh
Q 027473 213 FFPNQFFA 220 (223)
Q Consensus 213 sfa~~~~~ 220 (223)
.|+...+.
T Consensus 70 m~s~rd~~ 77 (369)
T KOG0123|consen 70 MWSQRDPS 77 (369)
T ss_pred ehhccCCc
Confidence 99876543
No 74
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.70 E-value=4.6e-08 Score=88.76 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE--------EEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVML 201 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~--------vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~ 201 (223)
..++.|||.|||.++|-+|+.++|++||.|.. |+|.++.. |++||=|.|+|...++.+-|++.|++..
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecccHHHHHHHHhCccc
Confidence 45778999999999999999999999999974 77888765 7888999999999999999999999999
Q ss_pred ecCCCCCcEEEEcCc
Q 027473 202 THQAFLGSLRSFFPN 216 (223)
Q Consensus 202 l~~~~~~~lrisfa~ 216 (223)
+ .+..|||+-|+
T Consensus 208 ~---rg~~~rVerAk 219 (382)
T KOG1548|consen 208 L---RGKKLRVERAK 219 (382)
T ss_pred c---cCcEEEEehhh
Confidence 9 47889998775
No 75
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.68 E-value=7.7e-08 Score=82.79 Aligned_cols=77 Identities=30% Similarity=0.600 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++.+||+.|||.+++.+.|..+|.+|...++||++..+. + .|||+|.+...|..|..+|+|..|-- ...|
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~----~----iAfve~~~d~~a~~a~~~lq~~~it~--~~~m 214 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS----G----IAFVEFLSDRQASAAQQALQGFKITK--KNTM 214 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC----c----eeEEecchhhhhHHHhhhhccceecc--CceE
Confidence 478999999999999999999999999999999998763 3 99999999999999999999999952 6899
Q ss_pred EEEcCcc
Q 027473 211 RSFFPNQ 217 (223)
Q Consensus 211 risfa~~ 217 (223)
+|.||+.
T Consensus 215 ~i~~a~K 221 (221)
T KOG4206|consen 215 QITFAKK 221 (221)
T ss_pred EecccCC
Confidence 9999874
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.67 E-value=5.5e-08 Score=85.33 Aligned_cols=71 Identities=20% Similarity=0.201 Sum_probs=64.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
..+|+|.|||..+++++|++||..||.++.+-|-.++. |.++|+|=|.|...++|..|++.+||..+++..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~----G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~ 153 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA----GRSLGTADVSFNRRDDAERAVKKYNGVALDGRP 153 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC----CCCCccceeeecchHhHHHHHHHhcCcccCCce
Confidence 47899999999999999999999999888888888875 677789999999999999999999998887543
No 77
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=1.5e-08 Score=87.30 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=62.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
..||||+|+-..++|+-|.+||-+-|.|..|.|+.++. ++.| ||||+|.++....-|++.|||..+.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d----~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~ 76 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD----QEQK-FAYVFFPNENSVQLAGQLENGDDLEE 76 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc----CCCc-eeeeecccccchhhhhhhcccchhcc
Confidence 67999999999999999999999999999999999885 4445 99999999999999999999998853
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.60 E-value=3.2e-08 Score=89.63 Aligned_cols=63 Identities=22% Similarity=0.407 Sum_probs=57.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 196 (223)
..++|||++|++++|+|.|++.|++||+|.+|.++.|+++ |++.||+||+|.++++..++|..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t---~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST---GRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC---CCcccccceecCCCcchheeecc
Confidence 3789999999999999999999999999999999999955 66778999999999999988754
No 79
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=4.3e-08 Score=93.30 Aligned_cols=66 Identities=27% Similarity=0.401 Sum_probs=59.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
+..+|+|-|||..+++++|+.+|+.||+|++|+.-..+. | .+||+|.|..+|++|+++|++..+.+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~----~----~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR----G----IVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC----c----eEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 468999999999999999999999999999987655543 4 99999999999999999999988843
No 80
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.52 E-value=1.7e-07 Score=87.92 Aligned_cols=64 Identities=30% Similarity=0.525 Sum_probs=55.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L 197 (223)
...+|||+|||+++++.+|+++|.+||.|++.+|.... ++++...|+||+|.+.++++.||++-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~---~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS---PGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEec---cCCCcCceEEEEEeecchhhhhhhcC
Confidence 35679999999999999999999999999999988765 22444479999999999999999874
No 81
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.52 E-value=1.6e-07 Score=81.86 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=63.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
...+||+|+.+.+|-++++..|+.||.|..|.|+.++.. |.+|||+||+|.+.+.++.|+. |||..|.+
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~---~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~ 169 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFR---GHPKGFAYVEFSSYELVEEAYK-LDGSEIPG 169 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccC---CCcceeEEEecccHhhhHHHhh-cCCccccc
Confidence 579999999999999999999999999999999999843 5678899999999999999998 99999964
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=8.4e-08 Score=82.73 Aligned_cols=71 Identities=18% Similarity=0.303 Sum_probs=63.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
..+||++||+.+.+++|+++|..||.|.+|.+... |+||+|++..+|..|+..|||..|.+. .+.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g-----------f~fv~fed~rda~Dav~~l~~~~l~~e---~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG-----------FGFVEFEDPRDADDAVHDLDGKELCGE---RLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc-----------cceeccCchhhhhcccchhcCceecce---eeee
Confidence 37899999999999999999999999999877553 999999999999999999999999653 3889
Q ss_pred EcCcc
Q 027473 213 FFPNQ 217 (223)
Q Consensus 213 sfa~~ 217 (223)
+||.-
T Consensus 68 e~~r~ 72 (216)
T KOG0106|consen 68 EHARG 72 (216)
T ss_pred ecccc
Confidence 99873
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.49 E-value=4.4e-07 Score=88.72 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=67.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC---CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE---SRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~---~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
.+.|||+||++.++|+.|...|..||.|..|+|+.-+ .+++ ..-|+||-|.++.+|++|++.|||..+. .-
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r---~r~cgfvafmnR~D~era~k~lqg~iv~---~~ 247 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRR---ERNCGFVAFMNRADAERALKELQGIIVM---EY 247 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhcc---ccccceeeehhhhhHHHHHHHhcceeee---ee
Confidence 6789999999999999999999999999999997655 2222 2239999999999999999999999985 45
Q ss_pred cEEEEcCc
Q 027473 209 SLRSFFPN 216 (223)
Q Consensus 209 ~lrisfa~ 216 (223)
.|++-|++
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 67887774
No 84
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.43 E-value=6.1e-07 Score=81.41 Aligned_cols=140 Identities=16% Similarity=0.178 Sum_probs=90.1
Q ss_pred ccccccccccccccccCCCCCCCcccccchhhhhccCC--CccCCCCCCC-CCCCCCCCCCCCCCCCccccCCCCCCCCC
Q 027473 35 GHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMDPGPSA 111 (223)
Q Consensus 35 ~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~~~~~~--~~~~~~~~~~-r~~~g~~~G~~~~~~~~~~~g~~~~~~~~ 111 (223)
..+.+.=-+++-| ..|-.|.+..++.+... .|+.+ ++.|...++. +.+. ..-|.++++.+-.-
T Consensus 15 sw~ttee~Lr~yf-~~~Gev~d~~vm~d~~t--~rsrgFgfv~f~~~~~v~~vl~--~~~h~~dgr~ve~k--------- 80 (311)
T KOG4205|consen 15 SWETTEESLREYF-SQFGEVTDCVVMRDPST--GRSRGFGFVTFATPEGVDAVLN--ARTHKLDGRSVEPK--------- 80 (311)
T ss_pred CccccHHHHHHHh-cccCceeeEEEeccCCC--CCcccccceecCCCcchheeec--ccccccCCccccce---------
Confidence 3444444455555 66778889999976555 46665 4566644333 3332 33444544433211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHH
Q 027473 112 KDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAA 191 (223)
Q Consensus 112 ~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~ 191 (223)
+.+.-..+. ...-.....+|||++||.++++++|++.|.+||.|..+.++.|+.+ .+++||+||.|.+++.+.
T Consensus 81 --~av~r~~~~--~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~---~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 81 --RAVSREDQT--KVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT---SRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred --eccCccccc--ccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc---cccccceeeEeccccccc
Confidence 111110000 0000113679999999999999999999999999999999988854 456679999999999998
Q ss_pred HHHH
Q 027473 192 TAMD 195 (223)
Q Consensus 192 ~Al~ 195 (223)
+++.
T Consensus 154 kv~~ 157 (311)
T KOG4205|consen 154 KVTL 157 (311)
T ss_pred eecc
Confidence 8874
No 85
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.34 E-value=7.3e-07 Score=78.27 Aligned_cols=70 Identities=19% Similarity=0.350 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
....||+|-|..+++.+.|...|.+|..+...++++++.+ |++|||+||.|.+++++..|++.|+|.-+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRT---gKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRT---GKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccc---cccccceeeeecCHHHHHHHHHhhcccccc
Confidence 4679999999999999999999999999999999999733 899999999999999999999999998873
No 86
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.34 E-value=8.1e-07 Score=85.31 Aligned_cols=83 Identities=18% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
++.|||.+|...+.-.+|+.||++||.|+-.+|+++.. .+ | ..+|+||.+.+.++|.+||+.|+-+.|+ +.-|.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaR-sP-G-aRCYGfVTMSts~eAtkCI~hLHrTELH---GrmIS 478 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNAR-SP-G-ARCYGFVTMSTSAEATKCIEHLHRTELH---GRMIS 478 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCC-CC-C-cceeEEEEecchHHHHHHHHHhhhhhhc---ceeee
Confidence 57899999999999999999999999999999998851 12 2 2349999999999999999999999996 45677
Q ss_pred EEcCcchhh
Q 027473 212 SFFPNQFFA 220 (223)
Q Consensus 212 isfa~~~~~ 220 (223)
|+-|++-++
T Consensus 479 VEkaKNEp~ 487 (940)
T KOG4661|consen 479 VEKAKNEPG 487 (940)
T ss_pred eeecccCcc
Confidence 887776553
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.32 E-value=5.1e-06 Score=63.41 Aligned_cols=81 Identities=16% Similarity=0.145 Sum_probs=67.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCC--CCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC-CCCc
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA-FLGS 209 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~f--G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~-~~~~ 209 (223)
+||-|.|+|...|.++|.+++... |.+.=+-|+.|..+ +-..|||||.|.+++.|..-.+.++|..+... ....
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~---~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKN---KCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccC---CCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 699999999999999999888754 66666788888733 34667999999999999999999999999744 4556
Q ss_pred EEEEcCc
Q 027473 210 LRSFFPN 216 (223)
Q Consensus 210 lrisfa~ 216 (223)
..|+||+
T Consensus 79 c~i~yAr 85 (97)
T PF04059_consen 79 CEISYAR 85 (97)
T ss_pred EEEehhH
Confidence 7799986
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=1.4e-06 Score=83.31 Aligned_cols=89 Identities=21% Similarity=0.328 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
+...++||++||...++.+++++...||.++..+++.+... |.+|||||.+|.++.....|++.|||..+.+. ...
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~---g~skg~af~ey~dpsvtd~A~agLnGm~lgd~-~lv 362 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT---GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK-KLV 362 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc---ccccceeeeeeeCCcchhhhhcccchhhhcCc-eeE
Confidence 34679999999999999999999999999999999999854 67788999999999999999999999999543 234
Q ss_pred EEEEcCcchhhhc
Q 027473 210 LRSFFPNQFFAAL 222 (223)
Q Consensus 210 lrisfa~~~~~~~ 222 (223)
++..++.+..+.+
T Consensus 363 vq~A~~g~~~~~~ 375 (500)
T KOG0120|consen 363 VQRAIVGASNANV 375 (500)
T ss_pred eehhhccchhccc
Confidence 4444555554443
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.16 E-value=4.2e-06 Score=76.34 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE--------EEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCcee
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~--------vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
.+.+|||-+||.++++.+|.+.|.+++.|+. |.|-+++.+ +++||=|.|.|+++.+|+.|+..+++..+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT---~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKET---GAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccc---cCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3679999999999999999999999999863 556666643 78999999999999999999999999999
Q ss_pred cCCCCCcEEEEcCcch
Q 027473 203 HQAFLGSLRSFFPNQF 218 (223)
Q Consensus 203 ~~~~~~~lrisfa~~~ 218 (223)
++ .+|+|++|.-+
T Consensus 142 ~g---n~ikvs~a~~r 154 (351)
T KOG1995|consen 142 CG---NTIKVSLAERR 154 (351)
T ss_pred cC---CCchhhhhhhc
Confidence 64 78888888654
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.96 E-value=1.9e-05 Score=74.75 Aligned_cols=59 Identities=19% Similarity=0.380 Sum_probs=50.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 196 (223)
..-|-+.+|||+||++||.++|+.++ |..+.+++.. |++.|-|||||.+.+++++|+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~-----Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRN-----GRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccC-----CCcCcceEEEeechHHHHHHHHh
Confidence 56788899999999999999999996 6776666654 56666999999999999999974
No 91
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.92 E-value=2.9e-05 Score=59.92 Aligned_cols=59 Identities=24% Similarity=0.356 Sum_probs=40.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVM 200 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 200 (223)
..|.|.+++..++.++|+++|++||.|..|.+..... -|||-|.+++.|+.|++.+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~---------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT---------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S---------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC---------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999998877653 7999999999999999877654
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.92 E-value=3.9e-05 Score=71.37 Aligned_cols=75 Identities=15% Similarity=0.227 Sum_probs=67.6
Q ss_pred CCEEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 132 SSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 132 ~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+..|.|.||..+ +|.+-|..||+-||.|..|+|..++.. -|.|++.+...|+-|++.|+|.++.| ..|
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd--------~ALIQmsd~~qAqLA~~hL~g~~l~g---k~l 365 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD--------NALIQMSDGQQAQLAMEHLEGHKLYG---KKL 365 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc--------ceeeeecchhHHHHHHHHhhcceecC---ceE
Confidence 679999999876 899999999999999999999988732 69999999999999999999999975 789
Q ss_pred EEEcCcc
Q 027473 211 RSFFPNQ 217 (223)
Q Consensus 211 risfa~~ 217 (223)
||.+.+-
T Consensus 366 rvt~SKH 372 (492)
T KOG1190|consen 366 RVTLSKH 372 (492)
T ss_pred EEeeccC
Confidence 9998763
No 93
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.81 E-value=3.3e-05 Score=72.18 Aligned_cols=72 Identities=22% Similarity=0.250 Sum_probs=59.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeec---CCCCCCCCC-------ceEEEEEecCHHHHHHHHHHhcCc
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK---ESRHPGGDP-------LILCFVDFVSPAHAATAMDALQVM 200 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~---~~~~~gG~~-------kG~aFVeF~~~~~A~~Al~~LnG~ 200 (223)
+++||.+.|||.+-.-+.|.+||+.+|.|+.|||..- ...-++..+ |-||+|+|+..+.|.+|.+.|+-.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 4899999999999989999999999999999998765 222222333 569999999999999999998654
Q ss_pred ee
Q 027473 201 LT 202 (223)
Q Consensus 201 ~l 202 (223)
.-
T Consensus 310 ~~ 311 (484)
T KOG1855|consen 310 QN 311 (484)
T ss_pred hh
Confidence 43
No 94
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.79 E-value=1.6e-05 Score=71.46 Aligned_cols=79 Identities=25% Similarity=0.239 Sum_probs=67.0
Q ss_pred CCEEE-EcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 132 SSTLF-VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 132 ~~tLf-VgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++| |++|++++++++|+..|..+|.|..++++..+.. |.++||+||+|.+..++..++.. +...+ ...++
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s---~~~kg~a~~~~~~~~~~~~~~~~-~~~~~---~~~~~ 256 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEES---GDSKGFAYVDFSAGNSKKLALND-QTRSI---GGRPL 256 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCc---cchhhhhhhhhhhchhHHHHhhc-ccCcc---cCccc
Confidence 44555 9999999999999999999999999999998854 88999999999999999999876 66666 35667
Q ss_pred EEEcCcc
Q 027473 211 RSFFPNQ 217 (223)
Q Consensus 211 risfa~~ 217 (223)
+|.+.+.
T Consensus 257 ~~~~~~~ 263 (285)
T KOG4210|consen 257 RLEEDEP 263 (285)
T ss_pred ccccCCC
Confidence 7776654
No 95
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.73 E-value=0.00012 Score=69.39 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=50.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~-vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 196 (223)
...|-+.+||+.||++||.++|+..--+.. +-|+.++. |++.|-|||+|++.+.|++|+..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r----gR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR----GRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC----CCcccceEEEecCHHHHHHHHHH
Confidence 458899999999999999999998755544 44566653 56677999999999999999864
No 96
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=6.2e-05 Score=72.48 Aligned_cols=78 Identities=17% Similarity=0.160 Sum_probs=63.1
Q ss_pred CCCEEEEcCCCCC------CCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 131 ASSTLFVEGLPSD------CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 131 ~~~tLfVgnLp~~------~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
..+.|+|.|+|.- .-..-|..+|+++|.|+.+.++.+.. |.+|||.|++|.+..+|+.|++.|||+.|+-
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~----ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE----GGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc----CCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 4678999999953 22334678999999999999998875 5588999999999999999999999999973
Q ss_pred CCCCcEEEEc
Q 027473 205 AFLGSLRSFF 214 (223)
Q Consensus 205 ~~~~~lrisf 214 (223)
..++.+.-
T Consensus 133 --nHtf~v~~ 140 (698)
T KOG2314|consen 133 --NHTFFVRL 140 (698)
T ss_pred --cceEEeeh
Confidence 34555543
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.72 E-value=9.5e-05 Score=68.89 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=62.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+.||...|+|.+++||+|+.+|..-|..++....-. ++++ ++.+++++.|+|..|+-.++.+.+.. ..-||
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff~--kd~k-----mal~q~~sveeA~~ali~~hnh~lge--n~hlR 484 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ--KDRK-----MALPQLESVEEAIQALIDLHNHYLGE--NHHLR 484 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeeecC--CCcc-----eeecccCChhHhhhhccccccccCCC--CceEE
Confidence 779999999999999999999999988654432222 2222 99999999999999999999998852 35799
Q ss_pred EEcCc
Q 027473 212 SFFPN 216 (223)
Q Consensus 212 isfa~ 216 (223)
|||.+
T Consensus 485 vSFSk 489 (492)
T KOG1190|consen 485 VSFSK 489 (492)
T ss_pred EEeec
Confidence 99986
No 98
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.71 E-value=0.0003 Score=69.34 Aligned_cols=67 Identities=21% Similarity=0.312 Sum_probs=57.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCee-EEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~-~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
+.|-|.|+|++++-+||.++|..|-.+- +|++-.... |++.|-|.|-|++.++|..|..-|++.+|.
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~----G~pTGe~mvAfes~~eAr~A~~dl~~~~i~ 935 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD----GVPTGECMVAFESQEEARRASMDLDGQKIR 935 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC----CCcccceeEeecCHHHHHhhhhccccCccc
Confidence 3888999999999999999999997654 455544443 888889999999999999999999999984
No 99
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.68 E-value=0.0011 Score=61.39 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
+++.+.|-+|... ++-+.|-.||..||.|..|++++.+. | -|.||..+..+.+.|+..||+..+ .++.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----g----tamVemgd~~aver~v~hLnn~~l---fG~k 354 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----G----TAMVEMGDAYAVERAVTHLNNIPL---FGGK 354 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----c----eeEEEcCcHHHHHHHHHHhccCcc---ccce
Confidence 3789999999987 45667999999999999999998875 4 899999999999999999999998 5788
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|.|.+.+|.+
T Consensus 355 l~v~~SkQ~~ 364 (494)
T KOG1456|consen 355 LNVCVSKQNF 364 (494)
T ss_pred EEEeeccccc
Confidence 9999999976
No 100
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.67 E-value=1.7e-05 Score=75.81 Aligned_cols=75 Identities=16% Similarity=0.206 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
...|+|+--|+-..++.+|.++|+.+|.|..|+++.|+.. +.+||.|||+|.+.+....|| +|.|..+. +..|
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s---~rskgi~Yvef~D~~sVp~ai-aLsGqrll---g~pv 250 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNS---RRSKGIAYVEFCDEQSVPLAI-ALSGQRLL---GVPV 250 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccc---hhhcceeEEEEecccchhhHh-hhcCCccc---Ccee
Confidence 3579999999999999999999999999999999999833 457789999999999999998 78998884 4444
Q ss_pred EE
Q 027473 211 RS 212 (223)
Q Consensus 211 ri 212 (223)
-|
T Consensus 251 ~v 252 (549)
T KOG0147|consen 251 IV 252 (549)
T ss_pred Ee
Confidence 44
No 101
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.66 E-value=0.0002 Score=66.18 Aligned_cols=78 Identities=18% Similarity=0.114 Sum_probs=65.5
Q ss_pred CCCEEEEcCCC--CCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 131 ASSTLFVEGLP--SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp--~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
+++.|.+.=|. +.+|-+-|..|..+.|.|..|.|..+. | .-|.|||++.+.|++|.++|||..|-. ...
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----g---VQAmVEFdsv~~AqrAk~alNGADIYs-GCC 189 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----G---VQAMVEFDSVEVAQRAKAALNGADIYS-GCC 189 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----c---eeeEEeechhHHHHHHHhhcccccccc-cce
Confidence 36666666554 568999999999999999999887763 2 279999999999999999999999853 568
Q ss_pred cEEEEcCcc
Q 027473 209 SLRSFFPNQ 217 (223)
Q Consensus 209 ~lrisfa~~ 217 (223)
+|+|+||++
T Consensus 190 TLKIeyAkP 198 (494)
T KOG1456|consen 190 TLKIEYAKP 198 (494)
T ss_pred eEEEEecCc
Confidence 999999986
No 102
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.63 E-value=3.8e-05 Score=66.36 Aligned_cols=68 Identities=21% Similarity=0.235 Sum_probs=57.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..+.|+|.+++..+.+.+|.+.|+++|.+..+.+.. + ++||+|...++|..|++.|+|..+. .+.|
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~-------~----~~~v~Fs~~~da~ra~~~l~~~~~~---~~~l 163 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR-------N----FAFVEFSEQEDAKRALEKLDGKKLN---GRRI 163 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc-------c----ccceeehhhhhhhhcchhccchhhc---Ccee
Confidence 467999999999999999999999999985554411 2 8999999999999999999999984 4555
Q ss_pred EE
Q 027473 211 RS 212 (223)
Q Consensus 211 ri 212 (223)
.+
T Consensus 164 ~~ 165 (216)
T KOG0106|consen 164 SV 165 (216)
T ss_pred ee
Confidence 54
No 103
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.59 E-value=0.00047 Score=51.48 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=46.3
Q ss_pred CEEEEcCCCCCCCHHH----HHHhhcCCCC-eeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCC
Q 027473 133 STLFVEGLPSDCSRRE----VAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFL 207 (223)
Q Consensus 133 ~tLfVgnLp~~~teee----L~~lF~~fG~-i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~ 207 (223)
+.|||.|||.+..-.. |+.|+..+|. |.+| .. + .|+|.|.+++.|+.|.+.|+|..+- +
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---~~------~----tAilrF~~~~~A~RA~KRmegEdVf---G 66 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---SG------G----TAILRFPNQEFAERAQKRMEGEDVF---G 66 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T------T-----EEEEESSHHHHHHHHHHHTT--SS---S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---eC------C----EEEEEeCCHHHHHHHHHhhcccccc---c
Confidence 4799999999988776 5577888875 3333 11 3 8999999999999999999998884 6
Q ss_pred CcEEEEcCc
Q 027473 208 GSLRSFFPN 216 (223)
Q Consensus 208 ~~lrisfa~ 216 (223)
..|.|+|..
T Consensus 67 ~kI~v~~~~ 75 (90)
T PF11608_consen 67 NKISVSFSP 75 (90)
T ss_dssp S--EEESS-
T ss_pred ceEEEEEcC
Confidence 789999983
No 104
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.51 E-value=0.00021 Score=48.45 Aligned_cols=52 Identities=17% Similarity=0.332 Sum_probs=42.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHH
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al 194 (223)
++|-|.+.+.+..+.-|+ .|.+||+|.++.+....+ +.||.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~~~---------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPESTN---------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCCCc---------EEEEEECCHHHHHhhC
Confidence 578899999888766555 788899999998873332 8999999999999985
No 105
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.42 E-value=0.00015 Score=66.64 Aligned_cols=86 Identities=12% Similarity=0.124 Sum_probs=72.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG--~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.-.+|||||-|.+|++||.+.....| .|.++++..++.. |++||||.|...+....++-++.|--..|++ ...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~N---GQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG--Q~P 154 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTN---GQSKGYALLVLNSDAAVKQTMEILPTKTIHG--QSP 154 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccC---CcccceEEEEecchHHHHHHHHhcccceecC--CCC
Confidence 45899999999999999999988876 4556777777643 8889999999999999999999999999985 467
Q ss_pred EEEEcCcchhhhc
Q 027473 210 LRSFFPNQFFAAL 222 (223)
Q Consensus 210 lrisfa~~~~~~~ 222 (223)
..+++-+|+-|-|
T Consensus 155 ~V~~~NK~~~ak~ 167 (498)
T KOG4849|consen 155 TVLSYNKTNQAKL 167 (498)
T ss_pred eeeccchhhHHHH
Confidence 8888888876654
No 106
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0011 Score=63.45 Aligned_cols=65 Identities=23% Similarity=0.323 Sum_probs=50.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCce---EEEEEecCHHHHHHHHHH
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLI---LCFVDFVSPAHAATAMDA 196 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG---~aFVeF~~~~~A~~Al~~ 196 (223)
-+++||||+||++++|++|...|..||.+ .|..+.+...+..--+|| |+|+.|+++...+.-|.+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 47899999999999999999999999986 344454333322235788 999999999887765443
No 107
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.18 E-value=0.0038 Score=53.11 Aligned_cols=62 Identities=16% Similarity=0.189 Sum_probs=56.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
...+.|.+||.+.++++|++...+-|.|.-..+.+| | .+.|+|...++.+-|+..|...++.
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g----~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------G----VGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------c----ceeeeeeehhhHHHHHHhhcccccc
Confidence 568999999999999999999999999987777766 4 8999999999999999999988774
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.14 E-value=0.00018 Score=71.93 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=61.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
...|||.|+|+.+|.++|+.||+.+|.+++++++..+. |+|||.+||+|.++.+|..++...++..+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~----gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA----GKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc----cccccceeccCCCcchhhhhcccchhhhhh
Confidence 56899999999999999999999999999999888875 889999999999999999998776665553
No 109
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.07 E-value=0.00066 Score=68.43 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+++.+||++|..++....|...|..||.|..|.+-.. ++ |++|+|++...|+.|+..|-|..|.+. ...+
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-------q~--yayi~yes~~~aq~a~~~~rgap~G~P-~~r~ 523 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-------QP--YAYIQYESPPAAQAATHDMRGAPLGGP-PRRL 523 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-------Cc--ceeeecccCccchhhHHHHhcCcCCCC-Cccc
Confidence 3789999999999999999999999999988765333 22 999999999999999999999999765 4559
Q ss_pred EEEcCcchhh
Q 027473 211 RSFFPNQFFA 220 (223)
Q Consensus 211 risfa~~~~~ 220 (223)
||.||+..+|
T Consensus 524 rvdla~~~~~ 533 (975)
T KOG0112|consen 524 RVDLASPPGA 533 (975)
T ss_pred ccccccCCCC
Confidence 9999987765
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.002 Score=61.66 Aligned_cols=65 Identities=29% Similarity=0.337 Sum_probs=56.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhc-CCCCeeEEEEeecC-CCCCCCCCceEEEEEecCHHHHHHHHHH
Q 027473 128 PPDASSTLFVEGLPSDCSRREVAHIFR-PFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDA 196 (223)
Q Consensus 128 p~~~~~tLfVgnLp~~~teeeL~~lF~-~fG~i~~vrl~~~~-~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 196 (223)
+-|+.+|||||+||.-+|-+||..||. -||.|..|-|=+|. =| =|||-+-|.|.+...-.+||++
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~K----YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLK----YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccC----CCCCcceeeecccHHHHHHHhh
Confidence 446789999999999999999999999 79999999998883 32 3566999999999999999874
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.02 E-value=0.0036 Score=58.30 Aligned_cols=61 Identities=28% Similarity=0.429 Sum_probs=47.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcC---CC-CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRP---FV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~---fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 196 (223)
--.|-..+||+++|+.++.++|.+ .+ ..+.|-+++..+ |++.|-|||.|..+++|+.|+.+
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd----grpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD----GRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC----CCcccceEEEecCHHHHHHHHHH
Confidence 346778899999999999999964 32 444555555444 67777999999999999999865
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.92 E-value=0.003 Score=60.76 Aligned_cols=62 Identities=16% Similarity=0.152 Sum_probs=48.8
Q ss_pred HHHhhcCCCCeeEEEEeec-CCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEc
Q 027473 149 VAHIFRPFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFF 214 (223)
Q Consensus 149 L~~lF~~fG~i~~vrl~~~-~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisf 214 (223)
++.-+++||.|..|.++.. ...+. .-..|..||+|.+.++++.|+++|+|.++ +..+|..+|
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~-~~G~GkVFVefas~ed~qrA~~~L~GrKF---~nRtVvtsY 488 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENP-VPGTGKVFVEFADTEDSQRAMEELTGRKF---ANRTVVASY 488 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCc-CCCcccEEEEecChHHHHHHHHHccCcee---CCcEEEEEe
Confidence 4455788999999999888 33222 23345889999999999999999999999 457777776
No 113
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.88 E-value=0.004 Score=57.19 Aligned_cols=84 Identities=15% Similarity=0.270 Sum_probs=63.8
Q ss_pred CCEEEEcCCCCCCCHHHH------HHhhcCCCCeeEEEEeecC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 132 SSTLFVEGLPSDCSRREV------AHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL------~~lF~~fG~i~~vrl~~~~-~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
.+-+||-+||+.+-.|++ .+.|.+||.|+.|.|-++. +-.+.. ...-.||.|.+.++|..||...+|..+|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~-~h~gvYITy~~kedAarcIa~vDgs~~D- 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTA-SHAGVYITYSTKEDAARCIAEVDGSLLD- 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEeccccccccccc-ccceEEEEecchHHHHHHHHHhcccccc-
Confidence 578999999999888873 3889999999988665544 111110 0012499999999999999999999996
Q ss_pred CCCCcEEEEcCcchh
Q 027473 205 AFLGSLRSFFPNQFF 219 (223)
Q Consensus 205 ~~~~~lrisfa~~~~ 219 (223)
+..|+..|-.-||
T Consensus 192 --Gr~lkatYGTTKY 204 (480)
T COG5175 192 --GRVLKATYGTTKY 204 (480)
T ss_pred --CceEeeecCchHH
Confidence 5778888877665
No 114
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.79 E-value=0.0013 Score=63.85 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=67.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcC-CCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRP-FVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~-fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
..++.|+|.||-.-.|.-.|+.|+.. .|.|.+. ..|+-+. -|||.|.+.++|.+-+.+|||..+..++..
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkIKS-------hCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKIKS-------HCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHhhc-------ceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 36899999999999999999999995 4555555 4554221 699999999999999999999999999999
Q ss_pred cEEEEcCcc
Q 027473 209 SLRSFFPNQ 217 (223)
Q Consensus 209 ~lrisfa~~ 217 (223)
-|.+.|..+
T Consensus 513 ~L~adf~~~ 521 (718)
T KOG2416|consen 513 HLIADFVRA 521 (718)
T ss_pred eeEeeecch
Confidence 999999875
No 115
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.69 E-value=0.011 Score=44.04 Aligned_cols=55 Identities=18% Similarity=0.409 Sum_probs=43.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 198 (223)
....+|. .|.+....||.+||++||.| .|..+.+. -|||...+++.|..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT----------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT----------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT----------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC----------cEEEEeecHHHHHHHHHHhc
Confidence 4456665 99999999999999999997 67777774 79999999999999998875
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.63 E-value=0.0064 Score=46.61 Aligned_cols=71 Identities=17% Similarity=0.125 Sum_probs=48.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEE-------------EeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR-------------LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vr-------------l~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 198 (223)
.+.|.|=+.|...+ ..|.+.|++||.|.+.. +.... . +-.|.|+++.+|.+||+. |
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~-----N----Wi~I~Y~~~~~A~rAL~~-N 74 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG-----N----WIHITYDNPLSAQRALQK-N 74 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCT-----T----EEEEEESSHHHHHHHHTT-T
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCC-----C----EEEEECCCHHHHHHHHHh-C
Confidence 56788889999854 55668999999998875 22221 2 889999999999999975 9
Q ss_pred CceecCCCCCcEEEEcC
Q 027473 199 VMLTHQAFLGSLRSFFP 215 (223)
Q Consensus 199 G~~l~~~~~~~lrisfa 215 (223)
|..+.+. --+-|.+.
T Consensus 75 G~i~~g~--~mvGV~~~ 89 (100)
T PF05172_consen 75 GTIFSGS--LMVGVKPC 89 (100)
T ss_dssp TEEETTC--EEEEEEE-
T ss_pred CeEEcCc--EEEEEEEc
Confidence 9999543 22335554
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.20 E-value=0.0031 Score=55.76 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=61.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC-C----CCCCCCCceE----EEEEecCHHHHHHHHHHhcCcee
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-S----RHPGGDPLIL----CFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~-~----~~~gG~~kG~----aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
.-.||++++|+.+.-.-|++||+.||.|-.|.|.... + +.++|..+.. +.|||.+...|..+.+.|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4589999999999999999999999999999887654 1 0111222212 46999999999999999999999
Q ss_pred cCCCCCcE
Q 027473 203 HQAFLGSL 210 (223)
Q Consensus 203 ~~~~~~~l 210 (223)
.+.....+
T Consensus 154 ggkk~S~~ 161 (278)
T KOG3152|consen 154 GGKKKSPF 161 (278)
T ss_pred CCCCCCch
Confidence 77654443
No 118
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.97 E-value=0.03 Score=39.36 Aligned_cols=54 Identities=22% Similarity=0.372 Sum_probs=45.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCC---CCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPF---VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~f---G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L 197 (223)
.+|+|.|+.. .+.++|+..|..| .....|..+.|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 4899999954 8889999999998 234578888886 6899999999999999875
No 119
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.96 E-value=0.0015 Score=65.88 Aligned_cols=68 Identities=21% Similarity=0.225 Sum_probs=59.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~-~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
.+.|||++||+..+++.+|+..|..+|.|.+|.|-+-+ .+-.. |+||.|.+...+-.|+..+.+..|.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa-----~~f~~~~n~dmtp~ak~e~s~~~I~ 439 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESA-----YAFVSLLNTDMTPSAKFEESGPLIG 439 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccc-----hhhhhhhccccCcccchhhcCCccc
Confidence 57899999999999999999999999999999987664 22222 8999999999999999999998873
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.92 E-value=0.00068 Score=67.96 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=56.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCcee
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
..++||.||+..+.+++|...|.++|.+..|++...+.+ ++.+|.|||+|..++++.+||....+..+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~---~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNE---KRFRGKAYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhc---cccccceeeEeecCCchhhhhhhhhhhhh
Confidence 468999999999999999999999999988877733322 56777999999999999999976655433
No 121
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.91 E-value=0.0043 Score=62.44 Aligned_cols=74 Identities=18% Similarity=0.136 Sum_probs=64.8
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEE
Q 027473 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSF 213 (223)
Q Consensus 134 tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lris 213 (223)
+.++.|.+-+.+..-|..||+.||.|.+.+.+++.+ .+.|+|.+.+.|..|+++|+|..+-. ++.+.||+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---------~alvs~~s~~sai~a~dAl~gkevs~-~g~Ps~V~ 369 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---------MALVSFSSVESAILALDALQGKEVSV-TGAPSRVS 369 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc---------chhhhhHHHHHHHHhhhhhcCCcccc-cCCceeEE
Confidence 456667778889999999999999999999988874 89999999999999999999998743 57789999
Q ss_pred cCcc
Q 027473 214 FPNQ 217 (223)
Q Consensus 214 fa~~ 217 (223)
||+-
T Consensus 370 ~ak~ 373 (1007)
T KOG4574|consen 370 FAKT 373 (1007)
T ss_pred eccc
Confidence 9974
No 122
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.84 E-value=0.0089 Score=52.92 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=52.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHh
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L 197 (223)
...|||.||+.-++.+.|+.-|+.||.|....++.|.. |++.+=++|+|...-.|.+|+..+
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r----~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR----GKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc----ccccccchhhhhcchhHHHHHHHh
Confidence 36999999999999999999999999998766665553 444558899999999999999877
No 123
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.75 E-value=0.026 Score=47.25 Aligned_cols=83 Identities=12% Similarity=0.124 Sum_probs=52.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcC-CCCe---eEEEEeecC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRP-FVGY---KEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA 205 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~-fG~i---~~vrl~~~~-~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (223)
...+|.|++||++.||+++.+.+++ ++.. ..+.-.... .-.. ...--|||.|.+.+++..-++.++|+.+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~--~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKP--PTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTT--S--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCC--CcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 3679999999999999999998888 6665 334311121 1111 1122689999999999999999999988766
Q ss_pred CCC--cEEEEcC
Q 027473 206 FLG--SLRSFFP 215 (223)
Q Consensus 206 ~~~--~lrisfa 215 (223)
.+. .-.|+||
T Consensus 84 kg~~~~~~VE~A 95 (176)
T PF03467_consen 84 KGNEYPAVVEFA 95 (176)
T ss_dssp TS-EEEEEEEE-
T ss_pred CCCCcceeEEEc
Confidence 443 3345554
No 124
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.73 E-value=0.018 Score=53.77 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=53.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCe-e--EEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGY-K--EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVM 200 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i-~--~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 200 (223)
...|-+.+||++.+-|+|-++|..|..- + -|.++.+.. |+|.|-|||+|.+.+.|..|....+..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q----GrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ----GRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC----CCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 6689999999999999999999998542 2 267777765 566679999999999999988766554
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.63 E-value=0.0094 Score=55.63 Aligned_cols=63 Identities=16% Similarity=0.315 Sum_probs=52.0
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC-----CCCCCCCCceEEEEEecCHHHHHHHHHHhcCcee
Q 027473 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-----SRHPGGDPLILCFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 134 tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~-----~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
.|-|.||.+++|.+++..||.-.|.|.+++|.... ...+. .|||-|.+..++..|-. |.++.+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sR-----tcyVkf~d~~sv~vaQh-Ltntvf 76 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISR-----TCYVKFLDSQSVTVAQH-LTNTVF 76 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceee-----eEEEeccCCcceeHHhh-hcccee
Confidence 88899999999999999999999999999998743 22222 89999999999988854 444443
No 126
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.14 E-value=0.072 Score=49.09 Aligned_cols=67 Identities=15% Similarity=0.276 Sum_probs=52.8
Q ss_pred CCCEEEEcCCC----CCCC-------HHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC
Q 027473 131 ASSTLFVEGLP----SDCS-------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (223)
Q Consensus 131 ~~~tLfVgnLp----~~~t-------eeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG 199 (223)
..+||.+.|+= ++.+ +++|.+-.++||.|.+|.|.-. |+.| .+-|.|.+.++|..||+.|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdG----vvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDG----VVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCc----eeEEEeCChHHHHHHHHHhcC
Confidence 46899999985 3344 4556677999999999966543 3334 999999999999999999999
Q ss_pred ceecC
Q 027473 200 MLTHQ 204 (223)
Q Consensus 200 ~~l~~ 204 (223)
.-+++
T Consensus 337 R~fdg 341 (382)
T KOG1548|consen 337 RWFDG 341 (382)
T ss_pred eeecc
Confidence 88853
No 127
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.11 E-value=0.02 Score=54.02 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=46.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVML 201 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~ 201 (223)
++||++||.+.++..+|+.+|.....-.+-.++.+. | |+||++.+...|.+|++.|+|..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-----g----yafvd~pdq~wa~kaie~~sgk~ 61 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-----G----YAFVDCPDQQWANKAIETLSGKV 61 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-----c----eeeccCCchhhhhhhHHhhchhh
Confidence 579999999999999999999865211111122221 4 99999999999999999999975
No 128
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.06 E-value=0.072 Score=43.54 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=42.3
Q ss_pred HHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcC
Q 027473 148 EVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFP 215 (223)
Q Consensus 148 eL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa 215 (223)
+|.+.|..||.+.=||++.+ .-.|.|.+-++|.+|++ |+|.++. +..|+|+.-
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-----------~mwVTF~dg~sALaals-~dg~~v~---g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-----------TMWVTFRDGQSALAALS-LDGIQVN---GRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-----------CEEEEESSCHHHHHHHH-GCCSEET---TEEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC-----------eEEEEECccHHHHHHHc-cCCcEEC---CEEEEEEeC
Confidence 67789999999988888776 47899999999999985 7999994 566776543
No 129
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.60 E-value=0.061 Score=53.04 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=53.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
..++||+|+...|.++-++.+...+|-|.++..+. |+|++|.....+..|+..|+-..+++
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------------fgf~~f~~~~~~~ra~r~~t~~~~~~ 100 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------------FGFCEFLKHIGDLRASRLLTELNIDD 100 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------------hcccchhhHHHHHHHHHHhcccCCCc
Confidence 67999999999999999999999999887764322 88999999999999999888777754
No 130
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.19 E-value=0.026 Score=51.54 Aligned_cols=83 Identities=16% Similarity=0.295 Sum_probs=63.5
Q ss_pred CCEEEEcCCCCCCCHHHHH---HhhcCCCCeeEEEEeecCC--CCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 132 SSTLFVEGLPSDCSRREVA---HIFRPFVGYKEVRLVSKES--RHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~---~lF~~fG~i~~vrl~~~~~--~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
.+-+||-+|+.....+++- +.|.+||.|..|.+-.+.+ ...++-+ -++|.|...++|..||...+|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~--s~yITy~~~eda~rci~~v~g~~~d--- 151 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC--SVYITYEEEEDADRCIDDVDGFVDD--- 151 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC--cccccccchHhhhhHHHHhhhHHhh---
Confidence 5678899999887555543 6799999999998877762 2222211 2699999999999999999999986
Q ss_pred CCcEEEEcCcchh
Q 027473 207 LGSLRSFFPNQFF 219 (223)
Q Consensus 207 ~~~lrisfa~~~~ 219 (223)
+..|+.++...+|
T Consensus 152 g~~lka~~gttky 164 (327)
T KOG2068|consen 152 GRALKASLGTTKY 164 (327)
T ss_pred hhhhHHhhCCCcc
Confidence 4558888887776
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.18 E-value=0.061 Score=53.60 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=51.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 027473 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (223)
Q Consensus 127 ~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~-vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 196 (223)
.|-.....|||..||+.+++.++.+.|...-.|++ |.|....+ ++..+-|||+|..++++.+|...
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~----~~~~~~afv~F~~~~a~~~a~~~ 495 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPT----DLLRPAAFVAFIHPTAPLTASSV 495 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCc----ccccchhhheeccccccchhhhc
Confidence 44556889999999999999999999998877776 55544443 23334899999998888887643
No 132
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.71 E-value=1.3 Score=34.42 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=50.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA 205 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (223)
...+.+...|.-++-++|..+.+++- .|..+||+++...+ .-.+.+.|.+.+.|.+-.+.+||..+...
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pn-----rymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPN-----RYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCc-----eEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 34455555556666677877777764 45678999986332 23788999999999999999999988543
No 133
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.61 E-value=0.033 Score=49.24 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=44.3
Q ss_pred HHHhhc-CCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcC
Q 027473 149 VAHIFR-PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFP 215 (223)
Q Consensus 149 L~~lF~-~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa 215 (223)
|..-|+ +||+|+++.|-.+-.-|- .|-.||.|...++|++|++.|||--+ ++.+|...|.
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~hl----~GNVYV~f~~Ee~ae~a~~~lnnRw~---~G~pi~ae~~ 145 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGDHL----VGNVYVKFRSEEDAEAALEDLNNRWY---NGRPIHAELS 145 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccchhh----hhhhhhhcccHHHHHHHHHHHcCccc---cCCcceeeec
Confidence 333344 799999986655543333 34899999999999999999999888 4566665553
No 134
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.16 E-value=0.42 Score=43.47 Aligned_cols=65 Identities=18% Similarity=0.127 Sum_probs=47.7
Q ss_pred HHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcC
Q 027473 146 RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFP 215 (223)
Q Consensus 146 eeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa 215 (223)
|+++++-+.+||.|..|-|....+. + -.-..--||+|+..++|.+|+--|||.-+ ++..++--|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~-p-~deavRiFveF~r~e~aiKA~VdlnGRyF---GGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQ-P-EDEAVRIFVEFERVESAIKAVVDLNGRYF---GGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCC-c-cchhheeeeeeccHHHHHHHHHhcCCcee---cceeeeheec
Confidence 4567788999999999877665411 0 01122579999999999999999999998 4566665443
No 135
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.09 E-value=0.45 Score=46.52 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=53.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcC--CCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHH-------HhcCce
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRP--FVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD-------ALQVML 201 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~--fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~-------~LnG~~ 201 (223)
..++|.+.-+|.++-+|+++-||+. +..+.+|.+-.+. -.||.|++..+|+.|.+ .++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 4688999999999999999999986 7888888877665 37999999999999975 456666
Q ss_pred ecC
Q 027473 202 THQ 204 (223)
Q Consensus 202 l~~ 204 (223)
|+.
T Consensus 244 ImA 246 (684)
T KOG2591|consen 244 IMA 246 (684)
T ss_pred hhh
Confidence 653
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.93 E-value=0.4 Score=40.57 Aligned_cols=60 Identities=20% Similarity=0.164 Sum_probs=44.7
Q ss_pred CHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc--CceecCCCCCcEEEEcCc
Q 027473 145 SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--VMLTHQAFLGSLRSFFPN 216 (223)
Q Consensus 145 teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln--G~~l~~~~~~~lrisfa~ 216 (223)
..+.|+++|..|+.+.+...++... =..|.|.+.+.|..|...|+ ++.+. +..+|+-|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFr---------Ri~v~f~~~~~A~~~r~~l~~~~~~~~---g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFR---------RIRVVFESPESAQRARQLLHWDGTSFN---GKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTT---------EEEEE-SSTTHHHHHHHTST--TSEET---TEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCC---------EEEEEeCCHHHHHHHHHHhcccccccC---CCceEEEEcc
Confidence 4578999999999999988777762 47899999999999999999 88884 4568998883
No 137
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.75 E-value=0.89 Score=37.39 Aligned_cols=73 Identities=19% Similarity=0.209 Sum_probs=54.5
Q ss_pred CCEEEEcCCCCCC-CHHHHH---HhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCC
Q 027473 132 SSTLFVEGLPSDC-SRREVA---HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFL 207 (223)
Q Consensus 132 ~~tLfVgnLp~~~-teeeL~---~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~ 207 (223)
-.||.|.=|..++ ..+||+ .-.+.||.|.+|.+.-.. -|.|.|.+..+|=.|+.+++... .+
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq----------savVvF~d~~SAC~Av~Af~s~~----pg 151 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ----------SAVVVFKDITSACKAVSAFQSRA----PG 151 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc----------eEEEEehhhHHHHHHHHhhcCCC----CC
Confidence 6689998777665 334444 556789999999764432 69999999999999999988733 35
Q ss_pred CcEEEEcCcch
Q 027473 208 GSLRSFFPNQF 218 (223)
Q Consensus 208 ~~lrisfa~~~ 218 (223)
.-++.+|.-.|
T Consensus 152 tm~qCsWqqrF 162 (166)
T PF15023_consen 152 TMFQCSWQQRF 162 (166)
T ss_pred ceEEeeccccc
Confidence 67889987544
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=90.91 E-value=0.029 Score=49.74 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=55.1
Q ss_pred CCCCCCC---CCccccccccccccccccCCCCCCCcccccchhhhhccCC--CccCCCC-CCCCCCCCCCCCCCCCCCCc
Q 027473 26 PRTDYDV---PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRI 99 (223)
Q Consensus 26 ~~~d~~~---~~~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~~~~~~--~~~~~~~-~~~r~~~g~~~G~~~~~~~~ 99 (223)
+..||-| |+++||+|-++--.|+- |+++-.+|||.++=+ ..++| |+||.+- +..|||. +|+|.++.++.+
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akviRdkRT--gKSkgygfVSf~~pad~~rAmr-em~gkyVgsrpi 262 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKVIRDKRT--GKSKGYGFVSFRDPADYVRAMR-EMNGKYVGSRPI 262 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHh-ccchhhccccccccc--cccccceeeeecCHHHHHHHHH-hhcccccccchh
Confidence 3447777 78999999998777764 899999999986544 57776 6788874 6678998 999998887653
No 139
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.13 E-value=1.3 Score=40.43 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=48.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA 205 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (223)
...|-|=+.|+..+ .-|..+|++||.|+++....+ |. +-+|.|.++-+|++||.. ||..|++.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gN---wMhirYssr~~A~KALsk-ng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GN---WMHIRYSSRTHAQKALSK-NGTIIDGD 259 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------Cc---eEEEEecchhHHHHhhhh-cCeeeccc
Confidence 45666778887655 356689999999987755422 21 899999999999999976 88888654
No 140
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.99 E-value=1.7 Score=41.58 Aligned_cols=69 Identities=14% Similarity=0.256 Sum_probs=59.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC-CCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA 205 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~f-G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (223)
++.|+|-.+|..+|-.||-.+..+| -.|.++++++|...++ -...|.|.+.++|..=.+.+||..+...
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnr-----ymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNR-----YMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCce-----EEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 7899999999999999999988876 5678999999864333 2679999999999999999999988654
No 141
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=85.78 E-value=0.68 Score=41.72 Aligned_cols=69 Identities=19% Similarity=0.060 Sum_probs=56.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCcee
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
..+++|++++.+++.+.++..+|...|....+.+...+.. ...||++.|.|...+.+..|+.....+.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~---~~sk~~~s~~f~~ks~~~~~l~~s~~~~~ 155 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDS---LSSKGGLSVHFAGKSQFFAALEESGSKVL 155 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccc---cccccceeeccccHHHHHHHHHhhhcccc
Confidence 4679999999999999999999999998888777665421 45667999999999999999976554444
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=84.15 E-value=1.9 Score=42.05 Aligned_cols=81 Identities=11% Similarity=0.114 Sum_probs=54.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcC----------------------------CCCeeEEEEeecC-CCCCCCCCceEEEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRP----------------------------FVGYKEVRLVSKE-SRHPGGDPLILCFV 182 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~----------------------------fG~i~~vrl~~~~-~~~~gG~~kG~aFV 182 (223)
.+++-|+|+|..-+..+|..|... .|...=+.|+.|. ++ ...|||||
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nk----cNvGYAFI 436 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNK----CNVGYAFI 436 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccc----cccceeEE
Confidence 456666677766666665555432 3444446677776 32 34569999
Q ss_pred EecCHHHHHHHHHHhcCceecCC-CCCcEEEEcCc
Q 027473 183 DFVSPAHAATAMDALQVMLTHQA-FLGSLRSFFPN 216 (223)
Q Consensus 183 eF~~~~~A~~Al~~LnG~~l~~~-~~~~lrisfa~ 216 (223)
.|.+++.+....++.||++.+.= ......|.||+
T Consensus 437 Nm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 437 NMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred eecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 99999999999999999987532 33344566664
No 143
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.80 E-value=6.3 Score=38.94 Aligned_cols=84 Identities=15% Similarity=0.187 Sum_probs=61.8
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHhhcCC----CCeeEEEEeecC-CC------CCCC-----------------------
Q 027473 130 DASSTLFVEGLPSD-CSRREVAHIFRPF----VGYKEVRLVSKE-SR------HPGG----------------------- 174 (223)
Q Consensus 130 ~~~~tLfVgnLp~~-~teeeL~~lF~~f----G~i~~vrl~~~~-~~------~~gG----------------------- 174 (223)
..++.|-|.||.|+ +.-++|.-+|+.| |.|.+|.|.... .+ +--|
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 35789999999997 7889999999987 688888875332 00 0001
Q ss_pred --------------CCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEc
Q 027473 175 --------------DPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFF 214 (223)
Q Consensus 175 --------------~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisf 214 (223)
...-||.|+|.+.+.|....+..+|..+..+ +..|.+.|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS-~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS-ANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc-cceeeeee
Confidence 1235799999999999999999999998643 44454444
No 144
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=81.91 E-value=5.3 Score=28.34 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=35.0
Q ss_pred CCCCHHHHHHhhcCCCCee-----EEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcC
Q 027473 142 SDCSRREVAHIFRPFVGYK-----EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFP 215 (223)
Q Consensus 142 ~~~teeeL~~lF~~fG~i~-----~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa 215 (223)
..++..+|..++..-+.|. .|+|..+ |+||+-.. +.|+.+++.|++..+. +..++|+-|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~---gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIK---GKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SS---S----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCC---CeeEEEEEC
Confidence 4578888998888876664 5666544 89999775 5789999999999994 677877754
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=80.40 E-value=7.3 Score=27.57 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=39.8
Q ss_pred CCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 143 DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 143 ~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
.++-++++..+..|.- .+|..+++ | =||.|.+.++|++|....+|..+-
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t----G-----fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT----G-----FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC----E-----EEEEECChHHHHHHHHhcCCCEEE
Confidence 4677899999999974 35556654 3 499999999999999999998873
No 146
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.74 E-value=1.6 Score=39.65 Aligned_cols=72 Identities=25% Similarity=0.298 Sum_probs=50.8
Q ss_pred CCEEEEcCCCCC------------CCHHHHHHhhcCCCCeeEEEEeec-C------CCCCCCCCceEEE---------EE
Q 027473 132 SSTLFVEGLPSD------------CSRREVAHIFRPFVGYKEVRLVSK-E------SRHPGGDPLILCF---------VD 183 (223)
Q Consensus 132 ~~tLfVgnLp~~------------~teeeL~~lF~~fG~i~~vrl~~~-~------~~~~gG~~kG~aF---------Ve 183 (223)
..|||+.+||.. -+|+-|+..|..||.|..|.|+.- + ++.+|=+.+||+| |+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 458888888832 577889999999999999887532 1 2222223455554 67
Q ss_pred ecCHHHHHHHHHHhcCceec
Q 027473 184 FVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 184 F~~~~~A~~Al~~LnG~~l~ 203 (223)
|.....-..|+.+|.|.++.
T Consensus 229 fmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHhHHHHHHHHhcchHH
Confidence 77777778899999998764
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=70.40 E-value=0.21 Score=47.36 Aligned_cols=75 Identities=11% Similarity=0.170 Sum_probs=59.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
.++++-|.|+|+...++.|..|..+||.+..|..+...+..- ..-|+|.+.+.+..||..|||..+. ...+
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta------vvnvty~~~~~~~~ai~kl~g~Q~e---n~~~ 149 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA------VVNVTYSAQQQHRQAIHKLNGPQLE---NQHL 149 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH------HHHHHHHHHHHHHHHHHhhcchHhh---hhhh
Confidence 367899999999999999999999999999887654442110 3347899999999999999999884 3456
Q ss_pred EEEc
Q 027473 211 RSFF 214 (223)
Q Consensus 211 risf 214 (223)
+++|
T Consensus 150 k~~Y 153 (584)
T KOG2193|consen 150 KVGY 153 (584)
T ss_pred hccc
Confidence 6655
No 148
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=65.40 E-value=5.7 Score=38.33 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=54.4
Q ss_pred CCEEEEcCCCCCC-CHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 132 SSTLFVEGLPSDC-SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 132 ~~tLfVgnLp~~~-teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
.+.|=+.-.|+.. |-++|...|.+||.|..|-+-... . -|.|.|.+..+|-.|. +..+..| +.+.|
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-~--------~a~vTF~t~aeag~a~-~s~~avl---nnr~i 438 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-L--------HAVVTFKTRAEAGEAY-ASHGAVL---NNRFI 438 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-h--------hheeeeeccccccchh-cccccee---cCcee
Confidence 4566666666664 667899999999999887653331 1 4799999999996664 4578888 46889
Q ss_pred EEEcCcc
Q 027473 211 RSFFPNQ 217 (223)
Q Consensus 211 risfa~~ 217 (223)
+|-|-|.
T Consensus 439 Kl~whnp 445 (526)
T KOG2135|consen 439 KLFWHNP 445 (526)
T ss_pred EEEEecC
Confidence 9988765
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=65.24 E-value=1.4 Score=41.49 Aligned_cols=63 Identities=17% Similarity=0.057 Sum_probs=51.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCcee
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
..||+|++|+..+...++-++|..+|+|...++..+... -+|-|+|-.......|++. +|...
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s-------~~c~~sf~~qts~~halr~-~gre~ 213 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRS-------SSCSHSFRKQTSSKHALRS-HGRER 213 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCC-------cchhhhHhhhhhHHHHHHh-cchhh
Confidence 578999999999999999999999999988777665421 1788999988888888754 56554
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=64.85 E-value=4 Score=31.98 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=29.4
Q ss_pred EEEEcCCCCC---------CCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHH
Q 027473 134 TLFVEGLPSD---------CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAA 191 (223)
Q Consensus 134 tLfVgnLp~~---------~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~ 191 (223)
++.|-|++.+ .+.++|++.|+.|..++ |+.+.++..|++ ++.|+|.+.-..-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g-----~aiv~F~~~w~Gf 70 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTG-----FAIVEFNKDWSGF 70 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEE-----EEEEE--SSHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcE-----EEEEEECCChHHH
Confidence 5666677543 46688999999998874 666677655553 9999998765543
No 151
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=64.58 E-value=1.8 Score=38.05 Aligned_cols=67 Identities=18% Similarity=0.186 Sum_probs=54.6
Q ss_pred CCEEEEcC----CCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCcee
Q 027473 132 SSTLFVEG----LPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 132 ~~tLfVgn----Lp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
..++++|+ |...+|++.++.+|+.-+.+..+|+.++.. |++.-++||.+.-....-.++...++..+
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d----~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND----GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc----CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 45888888 889999999999999999999999998875 23333899999888777778777766544
No 152
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=60.34 E-value=12 Score=30.42 Aligned_cols=161 Identities=13% Similarity=0.112 Sum_probs=86.0
Q ss_pred CCccccccccccccccccCCCCCCCcccccchhh-hhccCC--CccCCCCCCC-CCCCCCCCCCCCCCCCccccCCCC-C
Q 027473 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDR-YLRSAQ--ISSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMD-P 107 (223)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~-~~~~~~--~~~~~~~~~~-r~~~g~~~G~~~~~~~~~~~g~~~-~ 107 (223)
.+..+++.--+++.|.. +.....+.-.+|+ -.++.+ +..|...+.. .++. .++|..+.++.+...-... .
T Consensus 122 nL~~~~~~~~l~~~F~~----~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~-~~~~~~~~~~~~~v~~~~~~~ 196 (306)
T COG0724 122 NLPYDVTEEDLRELFKK----FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIE-ELNGKELEGRPLRVQKAQPAS 196 (306)
T ss_pred CCCCCCCHHHHHHHHHh----cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHH-HcCCCeECCceeEeecccccc
Confidence 45556665555555544 2222333333454 234444 5677776443 5665 7888888887654422100 0
Q ss_pred CCCCCCC---CCCCCCC-CCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEE
Q 027473 108 GPSAKDR---ALGLGGG-RSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVD 183 (223)
Q Consensus 108 ~~~~~~~---~~g~~~~-~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVe 183 (223)
....... ...+... .............+++.+++..++..++..+|..+|.+..+.+...... ..+..+.++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 273 (306)
T COG0724 197 QPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG---KIPKSRSFVG 273 (306)
T ss_pred ccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCC---cccccccccc
Confidence 0000000 0000000 0111122234789999999999999999999999999977777666521 1233344555
Q ss_pred ecCHHHHHHHHHHhcCce
Q 027473 184 FVSPAHAATAMDALQVML 201 (223)
Q Consensus 184 F~~~~~A~~Al~~LnG~~ 201 (223)
+.....+..++.......
T Consensus 274 ~~~~~~~~~~~~~~~~~~ 291 (306)
T COG0724 274 NEASKDALESNSRGNKKK 291 (306)
T ss_pred hhHHHhhhhhhcccccee
Confidence 555555555554444433
No 153
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=45.59 E-value=16 Score=31.10 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=50.3
Q ss_pred CCEEEEcCCCCCC-CHHH----HHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 132 SSTLFVEGLPSDC-SRRE----VAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 132 ~~tLfVgnLp~~~-teee----L~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
.+++++.+++.++ ++.+ .+.||.+|-+....++++.. + ..-|.|.+++.|..|.-.++++.+.+.+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf-----r----rvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF-----R----RVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh-----c----eeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 4578888998764 2222 44677766665555555544 1 5679999999999999999999996432
Q ss_pred CCcEEEEcC
Q 027473 207 LGSLRSFFP 215 (223)
Q Consensus 207 ~~~lrisfa 215 (223)
-++.=||
T Consensus 81 --~~k~yfa 87 (193)
T KOG4019|consen 81 --ELKLYFA 87 (193)
T ss_pred --eEEEEEc
Confidence 4555444
No 154
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=43.92 E-value=11 Score=33.31 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=27.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV 162 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v 162 (223)
..+||+-|+|..+|++.|.++.+++|.+..+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 6799999999999999999999999866544
No 155
>PF14893 PNMA: PNMA
Probab=42.48 E-value=22 Score=32.91 Aligned_cols=25 Identities=28% Similarity=0.680 Sum_probs=20.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRP 155 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~ 155 (223)
+-+.|.|.++|.+|+++||++....
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 3568999999999999998877543
No 156
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=39.86 E-value=4.3 Score=39.86 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=53.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~-~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
.++|||.|++++++-.+|+.+++.+-.+..+-+-..- .+ ..+-+..|.|.-.-.-..|+.+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek----~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEK----NFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHH----HHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4789999999999999999999999888777654443 11 11115689999888888899999998774
No 157
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=36.67 E-value=1e+02 Score=28.38 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=36.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHH
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~ 189 (223)
.+-|+|+||+.++.-.||+..+.+-+.+ -.+|..+ +|.+ -||+.|-+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk--g~~~-----k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK--GHFG-----KCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee--cCCc-----ceeEecCCccC
Confidence 4679999999999999999998887653 2333332 3332 79999988653
No 158
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=36.38 E-value=53 Score=23.08 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=17.1
Q ss_pred HHHHHhhcCCCCeeEEEEeecC
Q 027473 147 REVAHIFRPFVGYKEVRLVSKE 168 (223)
Q Consensus 147 eeL~~lF~~fG~i~~vrl~~~~ 168 (223)
.+|++.|++.|.|.-+-+-...
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5799999999999776654443
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=32.92 E-value=59 Score=29.73 Aligned_cols=84 Identities=14% Similarity=0.151 Sum_probs=57.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCC----CCCCceEEEEEecCHHHHHHH----HHHhcCceec
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHP----GGDPLILCFVDFVSPAHAATA----MDALQVMLTH 203 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~----gG~~kG~aFVeF~~~~~A~~A----l~~LnG~~l~ 203 (223)
++.|...||..+++=.++-.-|-+||.|++|.|+.+..+.. --+.+..+.+.|-+++.+..- ++.|.-++-.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999999999999999999998761000 012233788999998875442 3334433321
Q ss_pred CCCCCcEEEEcCc
Q 027473 204 QAFLGSLRSFFPN 216 (223)
Q Consensus 204 ~~~~~~lrisfa~ 216 (223)
.....|.|+|..
T Consensus 95 -L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 -LKSESLTLSFVS 106 (309)
T ss_pred -cCCcceeEEEEE
Confidence 134567777765
No 160
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=31.28 E-value=77 Score=29.87 Aligned_cols=74 Identities=12% Similarity=0.175 Sum_probs=51.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEe-ecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLV-SKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFL 207 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~-vrl~-~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~ 207 (223)
-.++.|.+||...++++|.+-..+|-.-+. ..+. .+.+.. -...+.+||.|..+++...=.+.++|+.+-+.-+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~--~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLR--NHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccch--hhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 468889999999999999988888654222 1222 121110 1123378999999999888888999998765544
No 161
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.65 E-value=85 Score=30.11 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=44.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCe-eEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGY-KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i-~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 196 (223)
...|=|-++|...-.+||-.+|+.|+.- -.|..+.+. -+|-.|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----------eeEEeecchHHHHHHhhc
Confidence 4578899999999999999999999653 245555553 789999999999999854
No 162
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.05 E-value=1.8e+02 Score=18.99 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=41.2
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCH----HHHHHHHHH
Q 027473 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP----AHAATAMDA 196 (223)
Q Consensus 134 tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~----~~A~~Al~~ 196 (223)
|+.|.|+.-.--...|++.+...-.|.++.+-... + -.-|.|... +...++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~-----~----~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET-----K----TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT-----T----EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC-----C----EEEEEEecCCCCHHHHHHHHHH
Confidence 67888888888888999999999999998876554 2 678888755 445555554
No 163
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=27.47 E-value=38 Score=21.26 Aligned_cols=16 Identities=13% Similarity=0.337 Sum_probs=10.6
Q ss_pred CCCCHHHHHHhhcCCC
Q 027473 142 SDCSRREVAHIFRPFV 157 (223)
Q Consensus 142 ~~~teeeL~~lF~~fG 157 (223)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4689999999998765
No 164
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=22.08 E-value=1.2e+02 Score=27.92 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=44.7
Q ss_pred CCEEEEcCCC----CCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC---
Q 027473 132 SSTLFVEGLP----SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ--- 204 (223)
Q Consensus 132 ~~tLfVgnLp----~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~--- 204 (223)
.+.|||.|=+ .-++.++|+.+...... .+.|+.|. ||++|.. +++...+..-++..+--
T Consensus 146 ~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvDE-----------AY~eF~~-~~~~~l~~~~~nlivlRTfS 211 (356)
T COG0079 146 TKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVIDE-----------AYIEFSP-ESSLELLKYPPNLIVLRTFS 211 (356)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEeC-----------chhhcCC-chhhhhccCCCCEEEEEecH
Confidence 5688888655 23799999999998866 55677784 8999999 44333333222222211
Q ss_pred --CCCCcEEEEc
Q 027473 205 --AFLGSLRSFF 214 (223)
Q Consensus 205 --~~~~~lrisf 214 (223)
-..-+|||-|
T Consensus 212 Ka~gLAGlRlGy 223 (356)
T COG0079 212 KAFGLAGLRVGY 223 (356)
T ss_pred Hhhhcchhceee
Confidence 1345788887
No 165
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.41 E-value=1.2e+02 Score=27.10 Aligned_cols=32 Identities=16% Similarity=0.145 Sum_probs=25.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRL 164 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl 164 (223)
....|+|||+++|..-|.+++...-.+....+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 36779999999999999999987665544333
No 166
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=21.21 E-value=63 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhh
Q 027473 132 SSTLFVEGLPSDCSRREVAHIF 153 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF 153 (223)
.++|-|.|||....|++|++..
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 6799999999999999998754
No 167
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.54 E-value=1.1e+02 Score=22.21 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=21.6
Q ss_pred CceEEEEEecCHHHHHHHHHHhcCcee
Q 027473 176 PLILCFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 176 ~kG~aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
.|||-|||=.+..+...|++.+.+...
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred CceEEEEEeCCHHHHHHHHhcccceee
Confidence 345999999999999999988776554
Done!