Query 027473
Match_columns 223
No_of_seqs 277 out of 1449
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 17:33:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027473.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027473hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 5.6E-22 1.9E-26 148.8 10.8 80 132-217 19-98 (99)
2 2e5h_A Zinc finger CCHC-type a 99.8 2E-20 6.8E-25 137.1 12.2 80 131-216 15-94 (94)
3 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.7E-21 3E-25 136.9 9.8 83 131-219 5-87 (87)
4 2dnh_A Bruno-like 5, RNA bindi 99.8 3.6E-20 1.2E-24 138.5 12.8 85 131-219 14-98 (105)
5 2dnz_A Probable RNA-binding pr 99.8 2.6E-20 8.7E-25 136.7 11.3 83 131-219 4-86 (95)
6 3s8s_A Histone-lysine N-methyl 99.8 2.8E-20 9.7E-25 142.3 11.4 81 132-218 6-86 (110)
7 2la6_A RNA-binding protein FUS 99.8 4E-20 1.4E-24 137.2 11.6 83 128-216 9-99 (99)
8 2cqc_A Arginine/serine-rich sp 99.8 4.6E-20 1.6E-24 135.1 11.7 82 130-217 13-94 (95)
9 2cq0_A Eukaryotic translation 99.8 4.4E-20 1.5E-24 137.8 11.7 84 130-219 13-96 (103)
10 2cpz_A CUG triplet repeat RNA- 99.8 4.9E-20 1.7E-24 140.3 12.2 83 131-219 24-106 (115)
11 2lxi_A RNA-binding protein 10; 99.8 3.3E-21 1.1E-25 142.3 5.3 82 132-219 1-84 (91)
12 2do4_A Squamous cell carcinoma 99.8 8.9E-20 3E-24 135.4 12.8 82 131-219 16-97 (100)
13 3md1_A Nuclear and cytoplasmic 99.8 4.3E-20 1.5E-24 132.1 10.6 81 132-218 1-81 (83)
14 1x5u_A Splicing factor 3B subu 99.8 4.8E-20 1.6E-24 137.8 11.3 84 130-219 13-96 (105)
15 4f25_A Polyadenylate-binding p 99.8 2.2E-20 7.5E-25 143.1 9.6 79 132-218 5-83 (115)
16 2lkz_A RNA-binding protein 5; 99.8 1.2E-20 4.1E-25 141.3 7.4 80 132-217 9-94 (95)
17 2dgp_A Bruno-like 4, RNA bindi 99.8 3E-20 1E-24 139.1 9.6 87 130-219 11-97 (106)
18 2khc_A Testis-specific RNP-typ 99.8 1E-19 3.6E-24 138.8 12.7 80 131-216 39-118 (118)
19 2ywk_A Putative RNA-binding pr 99.8 3.6E-20 1.2E-24 135.9 9.6 81 130-217 14-94 (95)
20 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4E-20 1.4E-24 132.8 9.6 80 131-216 6-85 (85)
21 2dgo_A Cytotoxic granule-assoc 99.8 7.9E-20 2.7E-24 138.9 11.6 84 130-219 13-96 (115)
22 1x4a_A Splicing factor, argini 99.8 1.3E-19 4.5E-24 136.6 12.5 80 130-218 20-99 (109)
23 2dnm_A SRP46 splicing factor; 99.8 4.8E-20 1.6E-24 137.6 9.9 83 130-218 11-93 (103)
24 2x1f_A MRNA 3'-END-processing 99.8 5.5E-20 1.9E-24 135.7 10.2 82 132-219 2-83 (96)
25 2d9p_A Polyadenylate-binding p 99.8 1.1E-19 3.9E-24 135.5 11.9 81 130-218 13-93 (103)
26 1x4h_A RNA-binding protein 28; 99.8 1.1E-19 3.8E-24 136.8 12.0 84 130-219 13-102 (111)
27 2dgs_A DAZ-associated protein 99.8 1.3E-19 4.4E-24 134.3 11.7 82 131-219 9-90 (99)
28 2div_A TRNA selenocysteine ass 99.8 5.5E-20 1.9E-24 136.1 9.6 85 131-218 8-94 (99)
29 3ns6_A Eukaryotic translation 99.8 1.6E-20 5.5E-25 140.5 6.7 83 131-218 5-93 (100)
30 1whw_A Hypothetical protein ri 99.8 9.4E-20 3.2E-24 134.8 10.7 84 131-220 7-90 (99)
31 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.3E-19 4.6E-24 135.1 11.5 82 130-219 13-94 (103)
32 2cq3_A RNA-binding protein 9; 99.8 2E-19 6.9E-24 134.1 12.5 82 130-219 13-94 (103)
33 2dng_A Eukaryotic translation 99.8 1.4E-19 4.6E-24 135.2 11.4 85 127-219 10-94 (103)
34 2cph_A RNA binding motif prote 99.8 1.3E-19 4.3E-24 135.7 11.3 83 131-219 14-98 (107)
35 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.1E-20 2.4E-24 136.2 9.7 83 131-219 11-93 (102)
36 2cpi_A CCR4-NOT transcription 99.8 1.1E-19 3.7E-24 138.2 10.9 87 131-220 14-103 (111)
37 1x5o_A RNA binding motif, sing 99.8 4.9E-19 1.7E-23 134.3 14.2 84 131-218 24-112 (114)
38 1p27_B RNA-binding protein 8A; 99.8 1E-19 3.5E-24 136.2 10.2 83 131-219 22-104 (106)
39 1x5s_A Cold-inducible RNA-bind 99.8 7.3E-20 2.5E-24 136.1 9.2 83 131-219 11-93 (102)
40 2do0_A HnRNP M, heterogeneous 99.8 2.7E-19 9.2E-24 135.5 12.4 80 131-217 14-93 (114)
41 2jrs_A RNA-binding protein 39; 99.8 1.7E-19 5.7E-24 137.0 11.2 82 131-218 25-106 (108)
42 2cpe_A RNA-binding protein EWS 99.8 1.5E-19 5.2E-24 136.9 10.9 84 130-219 13-104 (113)
43 1x5t_A Splicing factor 3B subu 99.8 6.5E-20 2.2E-24 134.8 8.5 81 132-218 5-86 (96)
44 2dgv_A HnRNP M, heterogeneous 99.8 1.3E-19 4.6E-24 132.1 9.8 80 131-218 7-86 (92)
45 2kxn_B Transformer-2 protein h 99.8 1.3E-19 4.5E-24 142.1 10.5 83 130-218 44-126 (129)
46 1wi8_A EIF-4B, eukaryotic tran 99.8 2E-19 6.7E-24 134.6 10.9 86 127-219 10-95 (104)
47 3p5t_L Cleavage and polyadenyl 99.8 4E-20 1.4E-24 135.3 6.7 81 133-219 2-84 (90)
48 2cpf_A RNA binding motif prote 99.8 1.2E-19 4.2E-24 133.9 9.2 85 132-219 5-89 (98)
49 1oo0_B CG8781-PA, drosophila Y 99.8 1.5E-19 5E-24 136.4 9.5 82 131-218 25-106 (110)
50 3ulh_A THO complex subunit 4; 99.8 2.3E-19 7.8E-24 134.5 10.5 80 130-216 27-106 (107)
51 1x4e_A RNA binding motif, sing 99.8 5.8E-20 2E-24 132.4 6.7 80 131-216 4-83 (85)
52 2fy1_A RNA-binding motif prote 99.8 2.4E-19 8.3E-24 137.7 10.2 83 130-219 5-87 (116)
53 2dh8_A DAZ-associated protein 99.8 1.9E-19 6.4E-24 134.7 9.2 83 130-219 14-96 (105)
54 2cqp_A RNA-binding protein 12; 99.8 1.8E-19 6.1E-24 133.1 8.9 82 131-218 14-95 (98)
55 2dhg_A TRNA selenocysteine ass 99.8 2E-19 6.9E-24 134.1 8.9 83 130-219 7-91 (104)
56 2cqd_A RNA-binding region cont 99.8 5.5E-19 1.9E-23 134.6 11.5 81 131-218 16-96 (116)
57 1u6f_A Tcubp1, RNA-binding pro 99.8 3E-19 1E-23 140.0 10.2 83 130-218 40-122 (139)
58 3ex7_B RNA-binding protein 8A; 99.8 2.6E-19 9E-24 138.1 9.7 83 131-219 21-103 (126)
59 3lqv_A PRE-mRNA branch site pr 99.8 4E-19 1.4E-23 135.0 10.5 82 128-218 4-85 (115)
60 1p1t_A Cleavage stimulation fa 99.8 1.1E-19 3.6E-24 135.5 6.7 82 131-218 7-88 (104)
61 2err_A Ataxin-2-binding protei 99.8 2.9E-19 9.9E-24 135.6 9.2 81 131-219 28-108 (109)
62 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.6E-19 1.6E-23 141.8 10.8 83 130-218 37-119 (156)
63 3n9u_C Cleavage and polyadenyl 99.8 3.9E-19 1.3E-23 144.0 9.8 82 131-218 54-137 (156)
64 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 9.6E-19 3.3E-23 136.4 11.7 79 131-215 62-140 (140)
65 4a8x_A RNA-binding protein wit 99.8 2.8E-19 9.7E-24 128.9 8.1 82 132-218 4-85 (88)
66 3ucg_A Polyadenylate-binding p 99.8 5.3E-19 1.8E-23 127.9 9.5 81 132-219 6-86 (89)
67 2ek1_A RNA-binding protein 12; 99.8 2.6E-19 8.8E-24 131.3 7.6 80 132-217 15-94 (95)
68 3s7r_A Heterogeneous nuclear r 99.8 1E-18 3.6E-23 126.3 10.7 79 130-215 9-87 (87)
69 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.8E-19 6.2E-24 134.4 6.7 81 130-218 17-98 (100)
70 2nlw_A Eukaryotic translation 99.8 4.7E-19 1.6E-23 133.4 9.0 80 130-217 13-99 (105)
71 1s79_A Lupus LA protein; RRM, 99.8 3.1E-19 1.1E-23 135.1 8.0 80 132-219 11-90 (103)
72 2dgw_A Probable RNA-binding pr 99.8 1.3E-18 4.3E-23 127.0 10.6 80 131-219 9-88 (91)
73 2cq1_A PTB-like protein L; RRM 99.8 2.1E-18 7.1E-23 130.5 12.1 77 131-219 14-92 (101)
74 2kt5_A RNA and export factor-b 99.8 3.8E-18 1.3E-22 131.5 13.7 82 130-218 33-114 (124)
75 3r27_A HnRNP L, heterogeneous 99.8 8.1E-19 2.8E-23 133.2 9.6 78 131-218 20-97 (100)
76 1sjq_A Polypyrimidine tract-bi 99.8 4.4E-19 1.5E-23 135.8 8.1 77 131-219 15-93 (105)
77 2cqg_A TDP-43, TAR DNA-binding 99.8 2.8E-18 9.7E-23 127.8 12.1 82 130-219 13-94 (103)
78 2cpy_A RNA-binding protein 12; 99.8 7.2E-19 2.5E-23 134.2 9.0 82 130-219 13-95 (114)
79 2db1_A Heterogeneous nuclear r 99.8 8.3E-19 2.8E-23 135.1 9.4 81 130-218 15-98 (118)
80 1wel_A RNA-binding protein 12; 99.8 6.1E-19 2.1E-23 136.4 8.5 85 128-219 21-105 (124)
81 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-18 4.1E-23 129.0 9.5 80 131-219 8-91 (96)
82 2m2b_A RNA-binding protein 10; 99.8 2.2E-19 7.5E-24 140.3 5.8 81 131-218 22-108 (131)
83 2cq4_A RNA binding motif prote 99.8 6.8E-19 2.3E-23 133.7 8.4 82 131-219 24-105 (114)
84 2fc9_A NCL protein; structure 99.8 2E-18 6.9E-23 128.2 10.6 79 131-219 14-92 (101)
85 1x4c_A Splicing factor, argini 99.8 2.3E-18 8E-23 130.0 11.1 80 130-219 13-94 (108)
86 1x4d_A Matrin 3; structural ge 99.8 9.1E-19 3.1E-23 133.0 8.5 77 130-218 13-92 (102)
87 2mss_A Protein (musashi1); RNA 99.8 6E-19 2.1E-23 124.2 6.9 75 134-215 1-75 (75)
88 2fc8_A NCL protein; structure 99.8 2.7E-18 9.2E-23 127.6 10.8 81 130-219 13-93 (102)
89 1why_A Hypothetical protein ri 99.8 3.8E-18 1.3E-22 126.0 11.6 79 131-219 16-94 (97)
90 2a3j_A U1 small nuclear ribonu 99.8 1.2E-18 4.1E-23 137.0 9.3 81 131-220 28-112 (127)
91 2cpj_A Non-POU domain-containi 99.8 2.5E-18 8.7E-23 127.4 10.6 77 131-219 14-90 (99)
92 2kn4_A Immunoglobulin G-bindin 99.8 1.4E-18 4.6E-23 138.8 9.4 82 131-218 69-150 (158)
93 1wg5_A Heterogeneous nuclear r 99.8 2.4E-18 8.3E-23 129.3 10.2 80 131-218 14-94 (104)
94 1wex_A Hypothetical protein (r 99.8 3.4E-18 1.2E-22 129.9 11.0 76 131-218 14-91 (104)
95 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.2E-18 7.4E-23 139.6 10.5 83 131-219 71-153 (165)
96 2dis_A Unnamed protein product 99.8 1.1E-18 3.9E-23 131.1 8.0 82 132-219 8-93 (109)
97 2lea_A Serine/arginine-rich sp 99.8 5E-19 1.7E-23 139.7 6.2 82 131-218 46-127 (135)
98 2rs2_A Musashi-1, RNA-binding 99.8 2E-18 6.9E-23 131.1 9.3 83 130-219 23-105 (109)
99 2ki2_A SS-DNA binding protein 99.8 2.4E-19 8.3E-24 130.4 4.0 80 133-219 2-81 (90)
100 2ytc_A PRE-mRNA-splicing facto 99.8 3.7E-18 1.2E-22 122.7 10.0 74 131-216 11-85 (85)
101 1wez_A HnRNP H', FTP-3, hetero 99.8 2.2E-18 7.5E-23 129.8 9.2 79 131-218 14-92 (102)
102 1nu4_A U1A RNA binding domain; 99.8 9E-19 3.1E-23 128.8 6.8 81 131-220 7-91 (97)
103 1uaw_A Mouse-musashi-1; RNP-ty 99.8 8E-19 2.7E-23 123.7 6.2 76 133-215 1-76 (77)
104 2krb_A Eukaryotic translation 99.8 8.5E-19 2.9E-23 125.7 6.1 73 132-212 1-80 (81)
105 1x4b_A Heterogeneous nuclear r 99.8 2.8E-18 9.5E-23 130.7 9.3 82 131-219 26-107 (116)
106 2ad9_A Polypyrimidine tract-bi 99.8 3.7E-18 1.3E-22 133.2 10.2 76 131-218 30-107 (119)
107 2jwn_A Embryonic polyadenylate 99.8 2.5E-18 8.5E-23 132.2 9.0 81 132-219 36-116 (124)
108 2dgt_A RNA-binding protein 30; 99.8 5.8E-18 2E-22 123.9 10.3 75 131-219 9-83 (92)
109 3q2s_C Cleavage and polyadenyl 99.7 1.9E-18 6.5E-23 147.9 8.4 82 131-218 67-150 (229)
110 2dnq_A RNA-binding protein 4B; 99.7 7.7E-18 2.6E-22 122.7 10.3 75 131-219 7-81 (90)
111 4f02_A Polyadenylate-binding p 99.7 4.8E-18 1.6E-22 142.1 10.4 83 130-218 13-95 (213)
112 2hgl_A HNRPF protein, heteroge 99.7 2.9E-18 9.9E-23 136.4 8.6 80 131-218 43-125 (136)
113 2lmi_A GRSF-1, G-rich sequence 99.7 1.8E-18 6E-23 130.7 6.4 81 130-218 9-92 (107)
114 2e5j_A Methenyltetrahydrofolat 99.7 8.9E-18 3E-22 124.2 10.0 78 130-218 17-94 (97)
115 2la4_A Nuclear and cytoplasmic 99.7 4.4E-18 1.5E-22 126.4 8.1 76 131-218 26-101 (101)
116 1fj7_A Nucleolin RBD1, protein 99.7 6.6E-19 2.2E-23 130.9 3.6 80 131-218 16-95 (101)
117 2dnn_A RNA-binding protein 12; 99.7 7.2E-18 2.5E-22 129.2 9.4 78 132-218 16-93 (109)
118 3nmr_A Cugbp ELAV-like family 99.7 8.5E-18 2.9E-22 133.8 10.0 82 131-216 94-175 (175)
119 2cpx_A Hypothetical protein FL 99.7 5E-18 1.7E-22 128.7 8.2 80 130-219 23-106 (115)
120 3md3_A Nuclear and cytoplasmic 99.7 2.1E-17 7.2E-22 130.1 12.1 121 73-217 45-166 (166)
121 2wbr_A GW182, gawky, LD47780P; 99.7 6.7E-18 2.3E-22 125.6 8.5 73 132-216 7-79 (89)
122 2dnp_A RNA-binding protein 14; 99.7 7.7E-18 2.6E-22 122.7 8.6 74 131-218 8-81 (90)
123 1x4g_A Nucleolysin TIAR; struc 99.7 1E-17 3.5E-22 126.3 9.3 78 131-220 24-101 (109)
124 2dgu_A Heterogeneous nuclear r 99.7 1.2E-17 4E-22 124.8 9.5 75 131-219 10-84 (103)
125 2cpd_A Apobec-1 stimulating pr 99.7 3.8E-17 1.3E-21 121.0 11.9 75 131-219 14-90 (99)
126 2hvz_A Splicing factor, argini 99.7 4.1E-18 1.4E-22 126.6 6.5 76 133-219 1-76 (101)
127 1fjc_A Nucleolin RBD2, protein 99.7 5.9E-18 2E-22 124.4 7.2 78 131-219 15-92 (96)
128 1x4f_A Matrin 3; structural ge 99.7 1.8E-17 6.2E-22 128.1 9.9 76 131-218 24-102 (112)
129 2jvr_A Nucleolar protein 3; RN 99.7 7.5E-18 2.6E-22 129.6 7.6 80 131-220 27-107 (111)
130 2e5i_A Heterogeneous nuclear r 99.7 3.7E-17 1.3E-21 128.4 11.6 77 133-219 26-103 (124)
131 1fxl_A Paraneoplastic encephal 99.7 2.8E-17 9.5E-22 129.6 10.8 82 132-219 2-83 (167)
132 2i2y_A Fusion protein consists 99.7 1.4E-17 4.7E-22 132.4 9.0 77 131-218 72-148 (150)
133 2f3j_A RNA and export factor b 99.7 1.6E-17 5.5E-22 136.9 9.3 83 130-219 86-168 (177)
134 2e44_A Insulin-like growth fac 99.7 2E-17 6.8E-22 121.6 8.8 80 131-220 14-94 (96)
135 1wf1_A RNA-binding protein RAL 99.7 1.8E-17 6.2E-22 125.2 8.7 74 130-217 25-99 (110)
136 2xnq_A Nuclear polyadenylated 99.7 3.4E-17 1.2E-21 121.8 9.9 75 130-218 20-95 (97)
137 1iqt_A AUF1, heterogeneous nuc 99.7 3.2E-18 1.1E-22 120.2 4.1 75 134-215 1-75 (75)
138 1b7f_A Protein (SXL-lethal pro 99.7 2.3E-17 8E-22 130.6 9.4 81 132-218 3-83 (168)
139 2lcw_A RNA-binding protein FUS 99.6 5.9E-19 2E-23 134.6 0.0 83 131-219 6-96 (116)
140 2hgn_A Heterogeneous nuclear r 99.7 3E-18 1E-22 136.8 4.0 80 130-218 44-123 (139)
141 1whx_A Hypothetical protein ri 99.7 1.4E-17 4.8E-22 126.9 7.5 75 132-218 10-84 (111)
142 2qfj_A FBP-interacting repress 99.7 4.6E-17 1.6E-21 134.1 11.2 170 33-221 35-208 (216)
143 2g4b_A Splicing factor U2AF 65 99.7 4.6E-17 1.6E-21 129.6 10.7 117 73-216 55-172 (172)
144 2jvo_A Nucleolar protein 3; nu 99.7 4.7E-17 1.6E-21 123.5 10.1 75 131-219 30-104 (108)
145 3egn_A RNA-binding protein 40; 99.7 2.2E-17 7.4E-22 130.2 8.5 79 130-217 43-129 (143)
146 3d2w_A TAR DNA-binding protein 99.7 3.8E-17 1.3E-21 120.0 9.1 80 131-223 10-89 (89)
147 1x5p_A Negative elongation fac 99.7 1.6E-16 5.3E-21 117.5 12.2 76 130-219 13-88 (97)
148 1sjr_A Polypyrimidine tract-bi 99.7 3.1E-17 1.1E-21 134.7 9.2 81 130-218 44-124 (164)
149 4f02_A Polyadenylate-binding p 99.7 3.6E-17 1.2E-21 136.8 9.8 156 33-218 22-181 (213)
150 3nmr_A Cugbp ELAV-like family 99.7 5.5E-17 1.9E-21 129.0 10.3 86 132-218 3-88 (175)
151 2hgm_A HNRPF protein, heteroge 99.7 1.9E-17 6.3E-22 130.3 7.4 79 131-218 41-121 (126)
152 2cqh_A IGF-II mRNA-binding pro 99.7 2.3E-17 7.8E-22 120.7 7.4 76 131-219 7-84 (93)
153 3zzy_A Polypyrimidine tract-bi 99.7 5.5E-17 1.9E-21 128.5 9.4 78 132-218 28-106 (130)
154 2kvi_A Nuclear polyadenylated 99.7 3.8E-17 1.3E-21 120.7 7.9 74 131-218 9-83 (96)
155 2xs2_A Deleted in azoospermia- 99.7 1.1E-17 3.8E-22 124.4 4.8 77 131-216 8-84 (102)
156 3pgw_S U1-70K; protein-RNA com 99.7 5.9E-17 2E-21 150.8 10.6 83 130-218 100-182 (437)
157 3md3_A Nuclear and cytoplasmic 99.7 5.5E-17 1.9E-21 127.7 8.7 79 133-218 1-79 (166)
158 2yh0_A Splicing factor U2AF 65 99.7 8.8E-17 3E-21 130.7 10.0 138 73-219 55-195 (198)
159 2dha_A FLJ20171 protein; RRM d 99.7 7.5E-18 2.6E-22 131.8 3.2 80 131-218 22-105 (123)
160 1b7f_A Protein (SXL-lethal pro 99.7 2.5E-16 8.7E-21 124.6 12.1 119 73-215 49-168 (168)
161 1l3k_A Heterogeneous nuclear r 99.7 8.8E-17 3E-21 130.5 9.6 82 130-218 11-92 (196)
162 1wg1_A KIAA1579 protein, homol 99.7 1.1E-16 3.8E-21 116.4 8.4 74 132-218 5-78 (88)
163 1fxl_A Paraneoplastic encephal 99.7 2E-16 6.9E-21 124.6 10.5 119 73-215 48-167 (167)
164 2dnl_A Cytoplasmic polyadenyla 99.7 9.4E-17 3.2E-21 122.4 8.2 70 132-202 8-80 (114)
165 2cjk_A Nuclear polyadenylated 99.7 6.1E-17 2.1E-21 128.3 7.3 80 132-218 87-166 (167)
166 1l3k_A Heterogeneous nuclear r 99.7 2.8E-16 9.7E-21 127.5 10.5 162 33-219 20-184 (196)
167 2e5g_A U6 snRNA-specific termi 99.7 2.4E-16 8.2E-21 115.8 9.0 75 132-218 8-82 (94)
168 2cq2_A Hypothetical protein LO 99.7 8.1E-17 2.8E-21 124.9 6.6 80 131-219 24-107 (114)
169 3tyt_A Heterogeneous nuclear r 99.7 2.4E-16 8.3E-21 132.3 10.0 76 132-218 4-80 (205)
170 2qfj_A FBP-interacting repress 99.7 2.5E-16 8.4E-21 129.7 9.9 83 131-219 27-109 (216)
171 3beg_B Splicing factor, argini 99.7 1.2E-16 4.3E-21 122.2 7.6 78 131-218 15-94 (115)
172 3pgw_A U1-A; protein-RNA compl 99.6 6.5E-16 2.2E-20 133.2 11.3 80 131-219 8-91 (282)
173 2hzc_A Splicing factor U2AF 65 99.6 4.4E-16 1.5E-20 112.0 7.4 71 131-214 5-86 (87)
174 2voo_A Lupus LA protein; RNA-b 99.6 8.1E-16 2.8E-20 128.2 10.0 81 132-220 109-189 (193)
175 3tyt_A Heterogeneous nuclear r 99.6 3.3E-16 1.1E-20 131.5 7.6 167 37-215 16-204 (205)
176 2bz2_A Negative elongation fac 99.6 8.2E-16 2.8E-20 119.2 9.3 76 130-219 37-112 (121)
177 1wf0_A TDP-43, TAR DNA-binding 99.6 2.4E-16 8.1E-21 114.3 5.7 75 132-219 5-79 (88)
178 1fje_B Nucleolin RBD12, protei 99.6 8.2E-16 2.8E-20 123.1 9.0 116 73-218 58-174 (175)
179 2cjk_A Nuclear polyadenylated 99.6 7.6E-16 2.6E-20 121.9 7.4 78 132-217 3-80 (167)
180 2adc_A Polypyrimidine tract-bi 99.6 1.5E-15 5E-20 128.3 9.1 77 131-218 33-110 (229)
181 3pgw_A U1-A; protein-RNA compl 99.6 2.6E-15 8.9E-20 129.4 10.3 77 131-217 206-282 (282)
182 2pe8_A Splicing factor 45; RRM 99.6 5.3E-15 1.8E-19 112.3 10.6 82 131-217 7-93 (105)
183 3smz_A Protein raver-1, ribonu 99.6 2.7E-15 9.2E-20 129.4 10.0 122 73-218 141-264 (284)
184 2j8a_A Histone-lysine N-methyl 99.6 1.5E-15 5E-20 120.6 7.4 79 133-217 3-95 (136)
185 2diu_A KIAA0430 protein; struc 99.6 3.1E-15 1.1E-19 112.5 8.7 72 132-219 8-85 (96)
186 3u1l_A PRE-mRNA-splicing facto 99.6 3.1E-15 1.1E-19 129.6 9.7 80 131-219 133-230 (240)
187 2ghp_A U4/U6 snRNA-associated 99.6 2.1E-15 7.3E-20 130.5 8.6 83 131-219 209-292 (292)
188 2dit_A HIV TAT specific factor 99.6 1.3E-14 4.3E-19 110.3 10.4 78 131-218 14-102 (112)
189 3sde_A Paraspeckle component 1 99.6 8.3E-15 2.8E-19 126.1 10.5 147 33-218 29-179 (261)
190 3smz_A Protein raver-1, ribonu 99.6 1E-14 3.5E-19 125.8 10.8 115 73-219 61-176 (284)
191 1fje_B Nucleolin RBD12, protei 99.5 1.4E-15 5E-20 121.6 3.5 81 130-218 11-91 (175)
192 2adc_A Polypyrimidine tract-bi 99.5 1.8E-14 6E-19 121.6 9.7 78 131-218 150-228 (229)
193 1qm9_A Polypyrimidine tract-bi 99.5 7E-15 2.4E-19 120.2 7.0 76 132-218 3-79 (198)
194 3sde_A Paraspeckle component 1 99.5 2E-14 7E-19 123.6 10.2 75 131-217 21-95 (261)
195 1qm9_A Polypyrimidine tract-bi 99.5 9.3E-15 3.2E-19 119.5 7.5 78 131-218 119-197 (198)
196 3tht_A Alkylated DNA repair pr 99.5 2E-14 6.9E-19 130.3 9.5 79 130-217 16-98 (345)
197 3v4m_A Splicing factor U2AF 65 99.5 3E-14 1E-18 108.0 8.0 82 132-217 5-96 (105)
198 2ghp_A U4/U6 snRNA-associated 99.5 2.5E-14 8.4E-19 123.8 8.0 111 73-218 85-197 (292)
199 2g4b_A Splicing factor U2AF 65 99.5 7.3E-14 2.5E-18 110.9 7.5 74 132-218 4-88 (172)
200 2yh0_A Splicing factor U2AF 65 99.5 1.1E-13 3.6E-18 112.4 7.9 74 132-218 4-88 (198)
201 1jmt_A Splicing factor U2AF 35 99.5 2.3E-14 7.7E-19 108.5 3.6 73 136-215 19-103 (104)
202 3ue2_A Poly(U)-binding-splicin 99.4 3.8E-13 1.3E-17 104.3 9.2 84 131-217 19-108 (118)
203 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.3E-12 4.6E-17 98.5 10.7 75 132-219 10-91 (100)
204 3s6e_A RNA-binding protein 39; 99.2 4.3E-11 1.5E-15 92.2 9.6 79 129-217 4-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 3.3E-10 1.1E-14 88.5 9.8 64 132-204 18-85 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 4E-10 1.4E-14 83.9 6.8 72 132-218 7-86 (91)
207 3dxb_A Thioredoxin N-terminall 98.9 3.6E-09 1.2E-13 88.5 8.4 71 143-216 140-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 4.6E-09 1.6E-13 78.6 4.9 70 132-216 15-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.1 1.2E-05 4.1E-10 61.7 8.3 73 130-214 19-96 (117)
210 1whv_A Poly(A)-specific ribonu 97.9 5.8E-05 2E-09 56.6 9.0 55 132-198 16-70 (100)
211 1uw4_A UPF3X; nonsense mediate 97.8 0.00029 9.8E-09 52.1 10.6 82 133-215 2-85 (91)
212 1wey_A Calcipressin 1; structu 97.4 0.00027 9.3E-09 53.5 6.4 73 132-216 5-82 (104)
213 3ctr_A Poly(A)-specific ribonu 97.4 0.00018 6.2E-09 54.0 5.0 53 134-198 8-60 (101)
214 2l08_A Regulator of nonsense t 97.1 0.0017 5.8E-08 48.5 7.7 83 132-215 9-93 (97)
215 2dhx_A Poly (ADP-ribose) polym 96.7 0.0059 2E-07 46.1 7.7 54 132-196 8-66 (104)
216 1wwh_A Nucleoporin 35, nucleop 96.6 0.0064 2.2E-07 47.0 7.1 62 131-203 23-84 (119)
217 2kn4_A Immunoglobulin G-bindin 96.3 0.0031 1.1E-07 49.1 4.0 34 161-199 2-35 (158)
218 2i2y_A Fusion protein consists 95.6 0.0055 1.9E-07 47.5 2.4 41 174-218 10-51 (150)
219 3pq1_A Poly(A) RNA polymerase; 95.5 0.0058 2E-07 57.2 2.5 55 132-195 53-107 (464)
220 3d45_A Poly(A)-specific ribonu 93.7 0.18 6.2E-06 47.4 8.1 55 132-198 440-494 (507)
221 3p3d_A Nucleoporin 53; structu 92.4 0.11 3.8E-06 40.7 3.8 71 132-204 7-88 (132)
222 4f25_A Polyadenylate-binding p 67.5 1.1 3.8E-05 32.7 0.0 98 34-148 13-113 (115)
223 4e8u_A Putative uncharacterize 45.6 28 0.00096 28.1 4.8 51 134-190 14-75 (172)
224 3pgw_S U1-70K; protein-RNA com 32.0 6.3 0.00022 35.9 -1.2 15 149-163 9-23 (437)
225 2g0c_A ATP-dependent RNA helic 30.2 1.1E+02 0.0036 20.2 5.2 59 143-216 12-75 (76)
226 2e7g_A Putative ribosome-bindi 22.8 2.1E+02 0.007 21.3 6.1 36 156-198 43-79 (129)
227 3fry_A Probable copper-exporti 22.8 1.5E+02 0.0051 18.6 4.8 60 132-202 6-65 (73)
228 3uzu_A Ribosomal RNA small sub 21.4 34 0.0012 29.0 1.5 33 133-165 115-147 (279)
229 3fut_A Dimethyladenosine trans 20.9 59 0.002 27.4 2.9 31 133-164 111-141 (271)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=5.6e-22 Score=148.84 Aligned_cols=80 Identities=19% Similarity=0.377 Sum_probs=74.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|+
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~afV~f~~~~~A~~Ai~~lng~~~~---gr~l~ 92 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA---GHSLGYGFVNYVTAKDAERAINTLNGLRLQ---SKTIK 92 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS---CCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCC---CcccccEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 689999999999999999999999999999999998743 788899999999999999999999999995 57899
Q ss_pred EEcCcc
Q 027473 212 SFFPNQ 217 (223)
Q Consensus 212 isfa~~ 217 (223)
|+||++
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999974
No 2
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=137.05 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 88 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDT---RKSKGVAFILFLDKDSAQNCTRAINNKQLF---GRVI 88 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSS---CCCTTCEEEEESCHHHHHHHHHHTTTEEET---TEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCcccEEEEEECCHHHHHHHHHHcCCCeeC---CcEE
Confidence 3789999999999999999999999999999999998743 566779999999999999999999999995 6899
Q ss_pred EEEcCc
Q 027473 211 RSFFPN 216 (223)
Q Consensus 211 risfa~ 216 (223)
+|+||+
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999986
No 3
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=8.7e-21 Score=136.88 Aligned_cols=83 Identities=19% Similarity=0.261 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 78 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMAT---GKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GRQI 78 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEEC---CeEE
Confidence 4789999999999999999999999999999999998743 778889999999999999999999999995 6889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.++
T Consensus 79 ~v~~a~~kp 87 (87)
T 3bs9_A 79 RTNWATRKP 87 (87)
T ss_dssp EEEEEC---
T ss_pred EEEecCCCC
Confidence 999999864
No 4
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=3.6e-20 Score=138.48 Aligned_cols=85 Identities=27% Similarity=0.285 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||.++|+++|+++|++||.|.+|+|+.+++ |+++|||||+|.+.++|++|++.|||..+.+.....|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD----GSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSS----SCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 478999999999999999999999999999999999873 6788899999999999999999999999965444899
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+.
T Consensus 90 ~V~~a~~~~ 98 (105)
T 2dnh_A 90 VVKFADTDK 98 (105)
T ss_dssp EEEESCSSC
T ss_pred EEEECccCc
Confidence 999998753
No 5
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=136.70 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 77 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDT---GRSKGYGFITFSDSECARRALEQLNGFELA---GRPM 77 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSS---CCCCSEEEEEESCHHHHHHHHHHHTTCCSS---SSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCC---CceeeEEEEEECCHHHHHHHHHHhCCCeeC---CcEE
Confidence 4789999999999999999999999999999999998743 667789999999999999999999999995 6889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+++.
T Consensus 78 ~V~~a~~~~ 86 (95)
T 2dnz_A 78 RVGHVTERL 86 (95)
T ss_dssp EEEESSCCC
T ss_pred EEEEccccc
Confidence 999998764
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=142.28 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=75.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||+++||++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|+
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~t---g~~rG~aFV~f~~~~~A~~Ai~~lng~~~~---gr~i~ 79 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRT---RKHLGLARVLFTSTRGAKETVKNLHLTSVM---GNIIH 79 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCC---CceeeEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 679999999999999999999999999999999999854 788899999999999999999999999995 67899
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|+||...
T Consensus 80 V~~a~~~ 86 (110)
T 3s8s_A 80 AQLDIKG 86 (110)
T ss_dssp EEECSTT
T ss_pred EEECCCC
Confidence 9998643
No 7
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=4e-20 Score=137.24 Aligned_cols=83 Identities=22% Similarity=0.269 Sum_probs=75.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE--------EEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC
Q 027473 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (223)
Q Consensus 128 p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~--------vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG 199 (223)
++.+.++|||+|||.++|+++|+++|++||.|.+ |+|+.++.+ |+++|||||+|.+.++|++|++.|||
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET---GKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTT---CSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCC---CCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3445899999999999999999999999999999 999998743 78889999999999999999999999
Q ss_pred ceecCCCCCcEEEEcCc
Q 027473 200 MLTHQAFLGSLRSFFPN 216 (223)
Q Consensus 200 ~~l~~~~~~~lrisfa~ 216 (223)
..++ +..|+|+||+
T Consensus 86 ~~~~---g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFS---GNPIKVSFAT 99 (99)
T ss_dssp CBSS---SSBCEEEECC
T ss_pred CEeC---CcEEEEEecC
Confidence 9995 6789999985
No 8
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=135.15 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.++++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 86 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS---RRSRGFAFVYFENVDDAKEAKERANGMELD---GRR 86 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSS---SSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC---CCcccEEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 34789999999999999999999999999999999998743 678889999999999999999999999994 688
Q ss_pred EEEEcCcc
Q 027473 210 LRSFFPNQ 217 (223)
Q Consensus 210 lrisfa~~ 217 (223)
|+|+||+.
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999973
No 9
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.4e-20 Score=137.75 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.. |+++|||||+|.+.++|++|++.|||..|+ +..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 86 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTT---GQSKGFAFISFHRREDAARAIAGVSGFGYD---HLI 86 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHHHHTTTCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCC---CceeeEEEEEECCHHHHHHHHHHcCCCeeC---CcE
Confidence 34789999999999999999999999999999999998743 678889999999999999999999999995 688
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+.
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999998763
No 10
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.83 E-value=4.9e-20 Score=140.25 Aligned_cols=83 Identities=16% Similarity=0.308 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||+++|+++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|+ +..|
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 97 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQT---NLSKCFGFVSYDNPVSAQAAIQSMNGFQIG---MKRL 97 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSS---CSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC---CCcCccEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 4789999999999999999999999999999999998743 788899999999999999999999999995 6889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+++-
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 999998763
No 11
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=3.3e-21 Score=142.26 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=72.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc-CceecCCCCCc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ-VMLTHQAFLGS 209 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln-G~~l~~~~~~~ 209 (223)
+++|||+|||+++||++|+++|++|| .|++|+|+.++.+ |+++|||||+|.+.++|++||+.|+ +..++ +..
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t---~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~---gr~ 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSS---GQSRGFAFVEFSHLQDATRWMEANQHSLNIL---GQK 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSS---CCCSSEEEEECSSHHHHHHHHHTTTTEEEET---TEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCC---CCcCceEEEEecCHHHHHHHHHhcCCCeEEC---CEE
Confidence 47999999999999999999999999 8999999998743 6778899999999999999999885 55674 688
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+.
T Consensus 75 i~V~~a~~~~ 84 (91)
T 2lxi_A 75 VSMHYSDPKP 84 (91)
T ss_dssp EEEECCCSCC
T ss_pred EEEEEcCCCC
Confidence 9999998764
No 12
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8.9e-20 Score=135.38 Aligned_cols=82 Identities=24% Similarity=0.440 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.+++ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 88 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRA----GKPKGLAYVEYENESQASQAVMKMDGMTIK---ENII 88 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTEESS---SCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCEEeEEEEEECCHHHHHHHHHHhCCCEEC---CEEE
Confidence 478999999999999999999999999999999999873 778889999999999999999999999995 6889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+++.
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 999998764
No 13
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=4.3e-20 Score=132.12 Aligned_cols=81 Identities=23% Similarity=0.301 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+.+|||+|||.++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~ 74 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQT---GSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPLR 74 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCC---CCccceEEEEECCHHHHHHHHHHhcCCeeC---CcEEE
Confidence 358999999999999999999999999999999998643 678889999999999999999999999994 68899
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|+||+++
T Consensus 75 v~~a~~~ 81 (83)
T 3md1_A 75 INWAAKL 81 (83)
T ss_dssp EEECCCC
T ss_pred EEecCcC
Confidence 9999876
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.8e-20 Score=137.79 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=76.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 86 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVT---GQHQGYGFVEFLSEEDADYAIKIMDMIKLY---GKP 86 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS---CSBCSCEEEEESSHHHHHHHHHHSSSCBCS---SCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CcCCcEEEEEECCHHHHHHHHHHhCCCeEC---CeE
Confidence 34789999999999999999999999999999999998733 677889999999999999999999999995 688
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+-
T Consensus 87 l~v~~a~~~~ 96 (105)
T 1x5u_A 87 IRVNKASAHN 96 (105)
T ss_dssp CEEEETTTTS
T ss_pred EEEEECCCCC
Confidence 9999998764
No 15
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=2.2e-20 Score=143.09 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++ +.+||||||+|.+.++|++||+.|||..|+ +..|+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-----~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~---g~~i~ 76 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQEAAERAIEKMNGMLLN---DRKVF 76 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-----CCCCceEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 6799999999999999999999999999999999986 346789999999999999999999999995 57899
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|+||+.+
T Consensus 77 V~~a~~~ 83 (115)
T 4f25_A 77 VGRFKSR 83 (115)
T ss_dssp EEESSCC
T ss_pred EEECCCc
Confidence 9998754
No 16
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=141.31 Aligned_cols=80 Identities=14% Similarity=0.245 Sum_probs=71.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCC--eeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc----eecCC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVG--YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVM----LTHQA 205 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~--i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~----~l~~~ 205 (223)
-+||||+|||+++|+++|+++|++||. |.+|+|+.|+.+ |+++|||||+|.+.++|++|++.|||. .|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~t---g~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i--- 82 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQT---QQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI--- 82 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSS---SSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE---
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCC---CCCceEeEEEECCHHHHHHHHHHhcCCCCCceE---
Confidence 679999999999999999999999995 679999999843 678889999999999999999999997 36
Q ss_pred CCCcEEEEcCcc
Q 027473 206 FLGSLRSFFPNQ 217 (223)
Q Consensus 206 ~~~~lrisfa~~ 217 (223)
.+..|+|+||+.
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 368999999974
No 17
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.82 E-value=3e-20 Score=139.11 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..+....+..
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFT---GMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSS---CSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34789999999999999999999999999999999998743 677789999999999999999999998863334688
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+-
T Consensus 88 l~v~~a~~~~ 97 (106)
T 2dgp_A 88 IQVKPADSES 97 (106)
T ss_dssp CEEEECCCCS
T ss_pred EEEEECCccc
Confidence 9999998653
No 18
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=1e-19 Score=138.82 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 112 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQT---SLSKCFGFVSFDNPDSAQVAIKAMNGFQVG---TKRL 112 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSS---SCCCCEEEEEEESSHHHHHHHHHCCCCEET---TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CCcCcEEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 4789999999999999999999999999999999988743 667789999999999999999999999995 6789
Q ss_pred EEEcCc
Q 027473 211 RSFFPN 216 (223)
Q Consensus 211 risfa~ 216 (223)
+|+||+
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999985
No 19
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=3.6e-20 Score=135.91 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..++ +..
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 86 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE----GKPKSFGFVCFKHPESVSYAIALLNGIRLY---GRP 86 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSTHHHHHHHHHHTTCEET---TEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCCceEEEEEECCHHHHHHHHHHhCCCEEC---CCE
Confidence 3478999999999999999999999999999999999874 678889999999999999999999999995 688
Q ss_pred EEEEcCcc
Q 027473 210 LRSFFPNQ 217 (223)
Q Consensus 210 lrisfa~~ 217 (223)
|+|+||+.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999974
No 20
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=4e-20 Score=132.81 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 79 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTI 79 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCC---CccccEEEEEECCHHHHHHHHHHhCCCEEC---CcEE
Confidence 4789999999999999999999999999999999988633 667779999999999999999999999994 6889
Q ss_pred EEEcCc
Q 027473 211 RSFFPN 216 (223)
Q Consensus 211 risfa~ 216 (223)
+|+||+
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999985
No 21
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=7.9e-20 Score=138.90 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|+ +..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 86 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMAT---GKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GRQ 86 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHTTTCEET---TEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 34889999999999999999999999999999999998743 778889999999999999999999999995 578
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+.
T Consensus 87 l~V~~a~~~~ 96 (115)
T 2dgo_A 87 IRTNWATRKP 96 (115)
T ss_dssp CEEEESSCCC
T ss_pred EEEEEccCCC
Confidence 9999998764
No 22
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=136.64 Aligned_cols=80 Identities=20% Similarity=0.338 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||.++|+++|+++|++||.|.+|+|..+ ++++|||||+|.+.++|++||+.|||..|+ +..
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 90 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR------RGGPPFAFVEFEDPRDAEDAVYGRDGYDYD---GYR 90 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS------SSSSCCEEEEESCHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC------CCCCcEEEEEECCHHHHHHHHHHcCCCEEC---CeE
Confidence 34789999999999999999999999999999999665 345669999999999999999999999995 678
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+++
T Consensus 91 l~V~~a~~~ 99 (109)
T 1x4a_A 91 LRVEFPRSG 99 (109)
T ss_dssp CEEECCCCC
T ss_pred EEEEEcccC
Confidence 999999875
No 23
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=137.55 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 84 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHT---KAPRGFAFVRFHDRRDAQDAEAAMDGAELD---GRE 84 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSS---CSBCSCEEEEESSSSHHHHHHHHHSSCCBT---TBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CCCCeEEEEEECCHHHHHHHHHHcCCCEEC---CcE
Confidence 34789999999999999999999999999999999998743 667789999999999999999999999995 678
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+.+
T Consensus 85 l~V~~a~~~ 93 (103)
T 2dnm_A 85 LRVQVARYG 93 (103)
T ss_dssp CEEEECSSC
T ss_pred EEEEECCcC
Confidence 999999864
No 24
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=5.5e-20 Score=135.73 Aligned_cols=82 Identities=12% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~ 75 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQT---GRSKGYAFIEFRDLESSASAVRNLNGYQLG---SRFLK 75 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT---CCBCSEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCC---CccceEEEEEECCHHHHHHHHHHhCCCeEC---CeEEE
Confidence 789999999999999999999999999999999998743 677789999999999999999999999995 58899
Q ss_pred EEcCcchh
Q 027473 212 SFFPNQFF 219 (223)
Q Consensus 212 isfa~~~~ 219 (223)
|+||+.+-
T Consensus 76 V~~a~~~~ 83 (96)
T 2x1f_A 76 CGYSSNSD 83 (96)
T ss_dssp EEECSCSS
T ss_pred EEEcCCCC
Confidence 99998763
No 25
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=135.50 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=74.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ . |+++|||||+|.+.++|++|++.|||..++ +..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 84 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-G----GRSKGFGFVCFSSPEEATKAVTEMNGRIVA---TKP 84 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-S----SSEEEEEEEEESSHHHHHHHHHHHTTCBSS---SSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-C----CCcCEEEEEEECCHHHHHHHHHHhCCCEeC---CcE
Confidence 45889999999999999999999999999999999988 2 778889999999999999999999999994 688
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+.+
T Consensus 85 l~V~~a~~~ 93 (103)
T 2d9p_A 85 LYVALAQRK 93 (103)
T ss_dssp CEEEECSSC
T ss_pred EEEEEeccc
Confidence 999999865
No 26
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=136.85 Aligned_cols=84 Identities=17% Similarity=0.197 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc------Cceec
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ------VMLTH 203 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln------G~~l~ 203 (223)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+.|| |..|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDT---EHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSS---CCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34889999999999999999999999999999999998743 6677899999999999999999999 99994
Q ss_pred CCCCCcEEEEcCcchh
Q 027473 204 QAFLGSLRSFFPNQFF 219 (223)
Q Consensus 204 ~~~~~~lrisfa~~~~ 219 (223)
+..|+|+||+.+-
T Consensus 90 ---g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 90 ---GRQLKVDLAVTRD 102 (111)
T ss_dssp ---SCEEEEECCCCCC
T ss_pred ---CEEEEEEECCCCc
Confidence 6889999998764
No 27
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=134.25 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++ |||..|+ +..|
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~l 81 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEK---QRPRGFGFITFEDEQSVDQAVN-MHFHDIM---GKKV 81 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTT---CSCCSEEEEEESSHHHHHHHHH-HCCCBSS---SCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCCCceEEEEECCHHHHHHHHH-hCCCEEC---CeEE
Confidence 4789999999999999999999999999999999998743 6677799999999999999998 9999995 6789
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+-
T Consensus 82 ~V~~a~~~~ 90 (99)
T 2dgs_A 82 EVKRAEPRD 90 (99)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCc
Confidence 999998753
No 28
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.5e-20 Score=136.10 Aligned_cols=85 Identities=15% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCee-EEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC-CC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF-LG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~-~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~-~~ 208 (223)
++++|||+|||.++|+++|+++|++||.|. +|+|+.++.+ |+++|||||+|.+.++|++|++.|||..+++.. ..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLT---GIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSS---CCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCC---CCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 478999999999999999999999999999 9999999743 678889999999999999999999999996432 12
Q ss_pred cEEEEcCcch
Q 027473 209 SLRSFFPNQF 218 (223)
Q Consensus 209 ~lrisfa~~~ 218 (223)
.|+|+||+..
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 3999999864
No 29
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=1.6e-20 Score=140.50 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 131 ASSTLFVEGLPS------DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 131 ~~~tLfVgnLp~------~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
.+++|||+|||+ ++++++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..+++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~t---g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEAT---GKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 368999999999 9999999999999999999999999853 6788899999999999999999999999953
Q ss_pred CCCCcEEEEcCcch
Q 027473 205 AFLGSLRSFFPNQF 218 (223)
Q Consensus 205 ~~~~~lrisfa~~~ 218 (223)
...|+|+||+++
T Consensus 82 --~r~l~V~~a~~~ 93 (100)
T 3ns6_A 82 --KHRLFLYTMKDV 93 (100)
T ss_dssp --SCBCEEEESHHH
T ss_pred --CeEEEEEECchh
Confidence 278999999764
No 30
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=9.4e-20 Score=134.83 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 80 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLT---KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ---GRML 80 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTT---CCCCSEEEEEESSHHHHHHHHHHTTTEESS---SCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCC---CCcCeEEEEEECCHHHHHHHHHHhCCCEEC---CcEE
Confidence 3789999999999999999999999999999999998732 667789999999999999999999999995 6889
Q ss_pred EEEcCcchhh
Q 027473 211 RSFFPNQFFA 220 (223)
Q Consensus 211 risfa~~~~~ 220 (223)
+|+||+.+-.
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 9999987643
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=135.10 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=74.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|++|++.|||..|+ +..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 84 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-----NDPYCFVEFYEHRDAAAALAAMNGRKIL---GKE 84 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-----SCCEEEEEESSHHHHHHHHHHHTTEEET---TEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-----CCCEEEEEECCHHHHHHHHHHhCCCCcC---CCe
Confidence 34789999999999999999999999999999999998743 3559999999999999999999999995 688
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2cqi_A 85 VKVNWATTPS 94 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEECCCCc
Confidence 9999998764
No 32
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=134.12 Aligned_cols=82 Identities=17% Similarity=0.207 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
...++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ ++|||||+|.+.++|++|++.|||..|+ +..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 84 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-----SKGFGFVTFENSADADRAREKLHGTVVE---GRK 84 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-----TCCEEEEEESCHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-----CcEEEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 34789999999999999999999999999999999998742 5569999999999999999999999994 688
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+.
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cq3_A 85 IEVNNATARV 94 (103)
T ss_dssp CEEEECCSSC
T ss_pred EEEEEcccCC
Confidence 9999998764
No 33
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.4e-19 Score=135.25 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=75.8
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 127 ~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
.++.+.++|||+|||+++|+++|+++|++|| |.+|+|+.++.+ |+++|||||+|.+.++|++|+ .|||..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--- 81 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDT---DKFKGFCYVEFDEVDSLKEAL-TYDGALLG--- 81 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHG-GGTTCEET---
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCC---CccceEEEEEECCHHHHHHHH-hhCCCeEC---
Confidence 3445588999999999999999999999996 999999999743 778899999999999999999 89999994
Q ss_pred CCcEEEEcCcchh
Q 027473 207 LGSLRSFFPNQFF 219 (223)
Q Consensus 207 ~~~lrisfa~~~~ 219 (223)
+..|+|+||+.+-
T Consensus 82 g~~l~V~~a~~~~ 94 (103)
T 2dng_A 82 DRSLRVDIAEGRK 94 (103)
T ss_dssp TEECEEEECCCCC
T ss_pred CeEEEEEEecCCC
Confidence 6789999998753
No 34
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=135.70 Aligned_cols=83 Identities=27% Similarity=0.371 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeec-CCCCCCCCCceEEEEEecCHHHHHHHHHHh-cCceecCCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDAL-QVMLTHQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~-~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L-nG~~l~~~~~~ 208 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.+ +.. |+++|||||+|.+.++|++|++.| ||..|+ +.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~---g~ 87 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGT---GAHRGFGFVDFITKQDAKKAFNALCHSTHLY---GR 87 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSS---CSSCSEEEEEESSHHHHHHHHHHHHTCCBSS---SC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCC---CCcCceEEEEECCHHHHHHHHHHhccCCeEC---CC
Confidence 4789999999999999999999999999999999988 422 677789999999999999999999 999995 57
Q ss_pred cEEEEcCcchh
Q 027473 209 SLRSFFPNQFF 219 (223)
Q Consensus 209 ~lrisfa~~~~ 219 (223)
.|+|+||+.+-
T Consensus 88 ~l~v~~a~~~~ 98 (107)
T 2cph_A 88 RLVLEWADSEV 98 (107)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEeCCCCC
Confidence 89999998753
No 35
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.1e-20 Score=136.17 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=75.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 84 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTI 84 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSS---CCCSSEEEECCSSHHHHHHHHHHHTTEEET---TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEE
Confidence 3789999999999999999999999999999999998643 567789999999999999999999999994 6899
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+-
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2cqb_A 85 RVNLAKPMR 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998753
No 36
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=138.20 Aligned_cols=87 Identities=17% Similarity=0.271 Sum_probs=77.5
Q ss_pred CCCEEEEcCCCCCCCHHHHH---HhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVA---HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFL 207 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~---~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~ 207 (223)
..++|||+|||+++|+++|+ ++|++||.|.+|+|+.++.....++++|||||+|.+.++|++||+.|||..|+ +
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~---g 90 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD---G 90 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET---T
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC---C
Confidence 37899999999999999999 99999999999999988743222467789999999999999999999999995 6
Q ss_pred CcEEEEcCcchhh
Q 027473 208 GSLRSFFPNQFFA 220 (223)
Q Consensus 208 ~~lrisfa~~~~~ 220 (223)
..|+|+||+.++.
T Consensus 91 r~l~V~~a~~k~~ 103 (111)
T 2cpi_A 91 RTLKASLGTTKYC 103 (111)
T ss_dssp EEEEEESCCCCSC
T ss_pred EEEEEEecccccc
Confidence 7999999998863
No 37
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-19 Score=134.28 Aligned_cols=84 Identities=15% Similarity=0.280 Sum_probs=76.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC-----
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA----- 205 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~----- 205 (223)
..++|||+|||.++|+++|+++|++||.|.+|+|+.+++ |+++|||||+|.+.++|++|++.|||..|++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSS----GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSS----SCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 478999999999999999999999999999999999973 67888999999999999999999999999754
Q ss_pred CCCcEEEEcCcch
Q 027473 206 FLGSLRSFFPNQF 218 (223)
Q Consensus 206 ~~~~lrisfa~~~ 218 (223)
....|+|+||+++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 3678999999965
No 38
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=136.21 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 95 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT---GYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQPI 95 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---SSEEEEEEEEESCHHHHHHHHHHHTTCBSS---SSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCC---CceeeEEEEEECCHHHHHHHHHHhcCCEEC---CcEE
Confidence 4789999999999999999999999999999999998743 678889999999999999999999999995 6889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+.
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999998753
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.3e-20 Score=136.11 Aligned_cols=83 Identities=22% Similarity=0.224 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 84 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRET---QRSRGFGFVTFENIDDAKDAMMAMNGKSVD---GRQI 84 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSS---CSCCSEEEEECSSHHHHHHHHHHHTTCCTT---SCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CCcccEEEEEECCHHHHHHHHHHhCCCEEC---CeEE
Confidence 3789999999999999999999999999999999998743 567789999999999999999999999995 5789
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+.
T Consensus 85 ~v~~a~~~~ 93 (102)
T 1x5s_A 85 RVDQAGKSS 93 (102)
T ss_dssp EEEEEECCC
T ss_pred EEEECCCCC
Confidence 999998753
No 40
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=135.55 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||.++|+++|+++|++||.|++|+|+.++. |+++|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 86 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD----GKSRGIGTVTFEQSIEAVQAISMFNGQLLF---DRPM 86 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT----CSEEEEEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCeeeEEEEEECCHHHHHHHHHHhCCCEeC---CCEE
Confidence 478999999999999999999999999999999999874 678889999999999999999999999995 6789
Q ss_pred EEEcCcc
Q 027473 211 RSFFPNQ 217 (223)
Q Consensus 211 risfa~~ 217 (223)
+|+||+.
T Consensus 87 ~v~~a~~ 93 (114)
T 2do0_A 87 HVKMDER 93 (114)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9999874
No 41
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=137.00 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=76.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~---g~~l 98 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSET---GRSKGYGFITFSDSECAKKALEQLNGFELA---GRPM 98 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTT---TEEEEEEEEEESCHHHHHHHHHHHTTCCSS---SSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 4789999999999999999999999999999999998743 778899999999999999999999999995 6889
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99999876
No 42
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=136.90 Aligned_cols=84 Identities=17% Similarity=0.218 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCee--------EEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYK--------EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVML 201 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~--------~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~ 201 (223)
...++|||+|||.++|+++|+++|++||.|. .|+|+.++.+ |+++|||||+|.+.++|++||+.|||..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKET---GKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTT---CSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCC---CCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3478999999999999999999999999999 6999998633 6778899999999999999999999999
Q ss_pred ecCCCCCcEEEEcCcchh
Q 027473 202 THQAFLGSLRSFFPNQFF 219 (223)
Q Consensus 202 l~~~~~~~lrisfa~~~~ 219 (223)
|+ +..|+|+||+.+-
T Consensus 90 ~~---g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 90 FQ---GSKLKVSLARKKP 104 (113)
T ss_dssp ET---TEECEEECSSCCC
T ss_pred cC---CCEEEEEECCCCC
Confidence 95 6889999998764
No 43
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.5e-20 Score=134.75 Aligned_cols=81 Identities=15% Similarity=0.242 Sum_probs=74.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE-EEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v-rl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+++|||+|||.++|+++|+++|++||.|.+| +|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 78 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDT---GNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPI 78 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTT---CSCCSEEEEEBSSHHHHHHHHHTTTTCEET---TEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCC---CCcCeEEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 7899999999999999999999999999999 99998633 677789999999999999999999999994 6889
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 79 ~v~~a~~~ 86 (96)
T 1x5t_A 79 TVSYAFKK 86 (96)
T ss_dssp EEEESCCC
T ss_pred EEEEeccc
Confidence 99999865
No 44
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.3e-19 Score=132.10 Aligned_cols=80 Identities=18% Similarity=0.151 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.+. |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~-----g~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l 78 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-----GKSKGCGVVKFESPEVAERACRMMNGMKLS---GREI 78 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESS-----SCEEEEEEEEESSHHHHHHHHHHHTTCCBT---TBCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccC-----CCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEE
Confidence 47899999999999999999999999999999999853 678889999999999999999999999995 6789
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 79 ~v~~a~~~ 86 (92)
T 2dgv_A 79 DVRIDRNA 86 (92)
T ss_dssp CCEECSCC
T ss_pred EEEEcCCC
Confidence 99999865
No 45
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=1.3e-19 Score=142.10 Aligned_cols=83 Identities=20% Similarity=0.192 Sum_probs=75.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
+++++|||+|||.++|+++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|+ +..
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~~G~afV~F~~~~~A~~Ai~~lng~~i~---g~~ 117 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS---RRSRGFAFVYFENVDDAKEAKERANGMELD---GRR 117 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSS---SCCCCEEEEEESCHHHHHHHHHHHTTCCSS---SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 44889999999999999999999999999999999998743 667789999999999999999999999995 688
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+.+
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 999999875
No 46
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=134.59 Aligned_cols=86 Identities=21% Similarity=0.243 Sum_probs=75.2
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 127 ~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
.|..+.++|||+|||+++|+++|+++|++|| |.+|+|+.++.+ .|+++|||||+|.+.++|++|| .|||..|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~--~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~--- 82 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSN--PERLKGFGYAEFEDLDSLLSAL-SLNEESLG--- 82 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSC--TTSBCSCEEEEESSHHHHHHHH-GGGTCEET---
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCC--CCCcCeEEEEEECCHHHHHHHH-hcCCCEeC---
Confidence 3444578999999999999999999999999 999999988732 1567779999999999999999 99999994
Q ss_pred CCcEEEEcCcchh
Q 027473 207 LGSLRSFFPNQFF 219 (223)
Q Consensus 207 ~~~lrisfa~~~~ 219 (223)
+..|+|+||+.+-
T Consensus 83 g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 83 NKRIRVDVADQAQ 95 (104)
T ss_dssp TEECEEEECCCCC
T ss_pred CcEEEEEEccCCC
Confidence 6789999998763
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4e-20 Score=135.31 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=69.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG--~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
.+|||+|||+++|+++|+++|++|| .|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~---g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~---gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN---GQSKGFALVGVGSEASSKKLMDLLPKRELH---GQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTT---CCEEEEEEECC-CHHHHHHHHHHGGGSCSS---SCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCC---CccCcEEEEEECCHHHHHHHHHHcCCCeeC---CEEE
Confidence 4899999999999999999999999 9999999999743 788999999999999999999999999995 6789
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|++++++.
T Consensus 76 ~V~~~~~~~ 84 (90)
T 3p5t_L 76 VVTPSNKLE 84 (90)
T ss_dssp EECCC----
T ss_pred EEEECCCCc
Confidence 999998764
No 48
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=133.93 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=75.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++.....|+++|||||+|.+.++|++|++.|||..|+ +..|+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 81 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD---GHKLE 81 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET---TEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC---CeEEE
Confidence 789999999999999999999999999999999988742111478889999999999999999999999995 67899
Q ss_pred EEcCcchh
Q 027473 212 SFFPNQFF 219 (223)
Q Consensus 212 isfa~~~~ 219 (223)
|+||+.+.
T Consensus 82 V~~a~~~~ 89 (98)
T 2cpf_A 82 VRISERAT 89 (98)
T ss_dssp EECSSCSS
T ss_pred EEEccCCC
Confidence 99998764
No 49
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=1.5e-19 Score=136.41 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l 98 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT---GFSKGYALVEYETHKQALAAKEALNGAEIM---GQTI 98 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTT---SSBCSEEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEEC---CcEE
Confidence 4789999999999999999999999999999999988743 677889999999999999999999999994 6889
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 99 ~V~~a~~~ 106 (110)
T 1oo0_B 99 QVDWCFVK 106 (110)
T ss_dssp EEEESEES
T ss_pred EEEEcccC
Confidence 99999865
No 50
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=2.3e-19 Score=134.51 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.++++|||+|||+++|+++|+++|++||.|++|+|+.+++ |+++|||||+|.+.++|++|++.|||..|+ +..
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 99 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS----GRSLGTADVHFERKADALKAMKQYNGVPLD---GRP 99 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcE
Confidence 3478999999999999999999999999999999999973 778889999999999999999999999994 688
Q ss_pred EEEEcCc
Q 027473 210 LRSFFPN 216 (223)
Q Consensus 210 lrisfa~ 216 (223)
|+|+||+
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999986
No 51
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.8e-20 Score=132.38 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~~ 77 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTT---NKCKGYGFVDFDSPSAAQKAVTALKASGVQ---AQMA 77 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSS---CSCCSEEEEEESCHHHHHHHHHHHHHHTCC---EESC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCcCcEEEEEECCHHHHHHHHHHhcCCeEe---eEEE
Confidence 4789999999999999999999999999999999998743 677789999999999999999999999985 4667
Q ss_pred EEEcCc
Q 027473 211 RSFFPN 216 (223)
Q Consensus 211 risfa~ 216 (223)
+++|++
T Consensus 78 ~~~~~~ 83 (85)
T 1x4e_A 78 KQSGPS 83 (85)
T ss_dssp CSSCCC
T ss_pred eecCCC
Confidence 777765
No 52
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=137.74 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
+..++|||+|||.++|+++|+++|++||.|.+|+|+.+++ |+++|||||+|.+.++|++|++.|||..|+ +..
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~---g~~ 77 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT----SKSRGFAFITFENPADAKNAAKDMNGKSLH---GKA 77 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTT----TTCCCEEEEECSSHHHHHHHHHHCSSCBCS---SSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 3478999999999999999999999999999999999873 677789999999999999999999999994 678
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+.
T Consensus 78 l~V~~a~~~~ 87 (116)
T 2fy1_A 78 IKVEQAKKPS 87 (116)
T ss_dssp CEEEECCCSS
T ss_pred EEEEECCCCC
Confidence 9999998653
No 53
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=134.73 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+. +|..|+ +..
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~~ 86 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTT---NQSRGFGFVKFKDPNCVGTVLAS-RPHTLD---GRN 86 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSS---CCEEEEEEEEESSTTHHHHHHHH-CSEEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC---CCcceEEEEEECCHHHHHHHHHh-CCCeEC---CEE
Confidence 34789999999999999999999999999999999998743 67888999999999999999999 999995 678
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+-
T Consensus 87 l~V~~a~~~~ 96 (105)
T 2dh8_A 87 IDPKPCTPRG 96 (105)
T ss_dssp EBCCCSCCSS
T ss_pred EEEEEccCCC
Confidence 9999998764
No 54
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-19 Score=133.07 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||+++|+++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l 87 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK---GMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKV 87 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSS---SCEEEEEEEEESCHHHHHHHHHHTTTCEET---TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCC---CCeeeEEEEEECCHHHHHHHHHHhCCCeeC---CeEE
Confidence 3689999999999999999999999999998888887643 788899999999999999999999999995 6889
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+|++.+
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99999865
No 55
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=134.13 Aligned_cols=83 Identities=17% Similarity=0.166 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcC-CCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce-ecCCCC
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRP-FVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVML-THQAFL 207 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~-fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~-l~~~~~ 207 (223)
.++++|||+|||+++|+++|+++|++ ||.|.+|+|+.+++ |+++|||||+|.+.++|++|++.|||.. ++ +
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~---g 79 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQT----GVSKGYGFVKFTDELEQKRALTECQGAVGLG---S 79 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTT----CCEEEEEEEEESCHHHHHHHHHHTTTCCSSS---S
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHHHccCCcccC---C
Confidence 34789999999999999999999999 99999999999973 6788899999999999999999999999 85 5
Q ss_pred CcEEEEcCcchh
Q 027473 208 GSLRSFFPNQFF 219 (223)
Q Consensus 208 ~~lrisfa~~~~ 219 (223)
..|+|+||+.+-
T Consensus 80 ~~l~v~~a~~~~ 91 (104)
T 2dhg_A 80 KPVRLSVAIPKA 91 (104)
T ss_dssp SCCCCCBCCCCC
T ss_pred EeEEEEEccCCC
Confidence 789999997653
No 56
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=134.59 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||+++|+++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++||+.|++ .|+ +..|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~---g~~l 88 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQT---GKSRGYGFVTMADRAAAERACKDPNP-IID---GRKA 88 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSS---CCCCSEEEEEESSHHHHHHHHTCSSC-EET---TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCC---CccceEEEEEECCHHHHHHHHHhCCC-cCC---CEEE
Confidence 4789999999999999999999999999999999998743 66778999999999999999999998 774 6889
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99999653
No 57
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=139.96 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=76.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
...++|||+|||.++|+++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 113 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRET---RQSRGYGFVKFQSGSSAQQAIAGLNGFNIL---NKR 113 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTT---TEEEEEEEEEESSHHHHHHHHHHTTTEECS---SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeE
Confidence 45789999999999999999999999999999999999743 678899999999999999999999999995 678
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+.+
T Consensus 114 l~v~~a~~~ 122 (139)
T 1u6f_A 114 LKVALAASG 122 (139)
T ss_dssp EEEEESSCC
T ss_pred EEEEECCCC
Confidence 999999865
No 58
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.79 E-value=2.6e-19 Score=138.06 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 94 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRT---GYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQPI 94 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTT---SSBCSCEEEEESSHHHHHHHHHHHTTCBSS---SSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCeeC---CeEE
Confidence 4789999999999999999999999999999999998743 677789999999999999999999999994 6889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+.
T Consensus 95 ~v~~a~~~~ 103 (126)
T 3ex7_B 95 SVDWCFVRG 103 (126)
T ss_dssp EEEESEESS
T ss_pred EEEEecCCC
Confidence 999997653
No 59
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=4e-19 Score=134.98 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=73.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCC
Q 027473 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFL 207 (223)
Q Consensus 128 p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~ 207 (223)
|+.++++|||+|||+++|+++|+++|++||.|.+|+|+.+. +++|||||+|.+.++|++|++.|||..++ +
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~------~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g 74 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP------ETRGTAYVVYEDIFDAKNAVDHLSGFNVS---N 74 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST------TTTTCEEEEESSHHHHHHHHHHHTTCBSS---S
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC------CCCcEEEEEECCHHHHHHHHHHcCCCEEC---C
Confidence 44558899999999999999999999999999999999763 34569999999999999999999999994 6
Q ss_pred CcEEEEcCcch
Q 027473 208 GSLRSFFPNQF 218 (223)
Q Consensus 208 ~~lrisfa~~~ 218 (223)
..|+|+||+.+
T Consensus 75 ~~l~v~~a~~~ 85 (115)
T 3lqv_A 75 RYLVVLYYNAN 85 (115)
T ss_dssp CBCEEEECCHH
T ss_pred eEEEEEEecCC
Confidence 78999999864
No 60
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-19 Score=135.47 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 80 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRET---GKPKGYGFCEYQDQETALSAMRNLNGREFS---GRAL 80 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTT---TEEEEEEEEECSCHHHHHHHHHHSSSBSCS---SSCB
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCC---CccceEEEEEECCHHHHHHHHHHhCCCeeC---CcEE
Confidence 4689999999999999999999999999999999998743 778889999999999999999999999994 6789
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 81 ~v~~a~~~ 88 (104)
T 1p1t_A 81 RVDNAASE 88 (104)
T ss_dssp EEEETTCT
T ss_pred EEEeCCCc
Confidence 99999865
No 61
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.9e-19 Score=135.58 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=74.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||.++|+++|+++|++||.|.+|+|+.++. +++|||||+|.+.++|++|++.|||..++ +..|
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-----~~kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l 99 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-----GSKGFGFVTFENSADADRAREKLHGTVVE---GRKI 99 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-----BCTTEEEEECCCSHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-----CCceEEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 478999999999999999999999999999999999863 35669999999999999999999999994 6889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+++.
T Consensus 100 ~V~~a~~~~ 108 (109)
T 2err_A 100 EVNNATARV 108 (109)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCc
Confidence 999998763
No 62
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=4.6e-19 Score=141.77 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=76.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.++++|||+|||.++|+++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|+ +..
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~ 110 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMK---KTACGFCFVEYYSRADAENAMRYINGTRLD---DRI 110 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHTTTSEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEEC---CeE
Confidence 35789999999999999999999999999999999999753 678889999999999999999999999994 688
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+.+
T Consensus 111 l~V~~a~~~ 119 (156)
T 1h2v_Z 111 IRTDWDAGF 119 (156)
T ss_dssp CEEEEESCC
T ss_pred EEEEECCCC
Confidence 999999764
No 63
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=3.9e-19 Score=143.98 Aligned_cols=82 Identities=9% Similarity=0.080 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG--~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
..++|||+|||+++|+++|+++|++|| .|.+|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|+ +.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~t---g~skGfaFV~f~~~~~A~~Ai~~lng~~~~---Gr 127 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRAN---GQSKGYAEVVVASENSVHKLLELLPGKVLN---GE 127 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHSTTCEET---TE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEEC---Ce
Confidence 368999999999999999999999999 9999999999744 788999999999999999999999999994 68
Q ss_pred cEEEEcCcch
Q 027473 209 SLRSFFPNQF 218 (223)
Q Consensus 209 ~lrisfa~~~ 218 (223)
.|+|+||+.+
T Consensus 128 ~l~V~~a~~~ 137 (156)
T 3n9u_C 128 KVDVRPATRQ 137 (156)
T ss_dssp ECEEEECCHH
T ss_pred EeEEEEcCCC
Confidence 8999999765
No 64
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=9.6e-19 Score=136.37 Aligned_cols=79 Identities=19% Similarity=0.295 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 135 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYET---EKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTI 135 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTT---CCCCSEEEEEESCHHHHHHHHHHSTEEEET---TEEE
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCC---CCcCcEEEEEECCHHHHHHHHHHhCCCEEC---CEEE
Confidence 3789999999999999999999999999999999998643 667789999999999999999999999995 6889
Q ss_pred EEEcC
Q 027473 211 RSFFP 215 (223)
Q Consensus 211 risfa 215 (223)
+|+||
T Consensus 136 ~v~~A 140 (140)
T 2ku7_A 136 RVNLA 140 (140)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99987
No 65
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=2.8e-19 Score=128.92 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ +++++|||||+|.+.++|++|++.|||..++ +..|+
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 78 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMH--PHLSKGYAYVEFENPDEAEKALKHMDGGQID---GQEIT 78 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTE--EEEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCC--CCCCCcEEEEEEecHHHHHHHHHHcCCCeEC---CeEEE
Confidence 679999999999999999999999999999999998742 1236679999999999999999999999995 68899
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|+||..+
T Consensus 79 v~~a~~~ 85 (88)
T 4a8x_A 79 ATAVLAP 85 (88)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9998764
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=5.3e-19 Score=127.94 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=74.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||+++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|+ .|||..++ +..|+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~-~~~g~~~~---g~~l~ 78 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFS---GHPKGFAYIEFSDKESVRTSL-ALDESLFR---GRQIK 78 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSS---SSCCEEEEEEESSTHHHHHHG-GGTTCEET---TEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCC---CCcceEEEEEECCHHHHHHHH-hcCCCEEC---CcEEE
Confidence 579999999999999999999999999999999998733 677889999999999999999 99999994 68899
Q ss_pred EEcCcchh
Q 027473 212 SFFPNQFF 219 (223)
Q Consensus 212 isfa~~~~ 219 (223)
|+||+++.
T Consensus 79 V~~a~~~~ 86 (89)
T 3ucg_A 79 VIPKRTNR 86 (89)
T ss_dssp EEETTTTS
T ss_pred EEEccCCC
Confidence 99998753
No 67
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=2.6e-19 Score=131.30 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=72.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||+++|+++|+++|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|+
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---gr~l~ 88 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEK---GMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKVK 88 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTT---SCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCC---CCEeeEEEEEECCHHHHHHHHHHhCCCeEC---CcEEE
Confidence 689999999999999999999999999999988888643 778899999999999999999999999994 68899
Q ss_pred EEcCcc
Q 027473 212 SFFPNQ 217 (223)
Q Consensus 212 isfa~~ 217 (223)
|+|++.
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 999864
No 68
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1e-18 Score=126.26 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=70.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++. ++..+ .+..
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~-~~~~~---~g~~ 81 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNT---GRSRGFGFILFKDAASVEKVLDQ-KEHRL---DGRV 81 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSTHHHHHHHHS-SCEEE---TTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC---CccccEEEEEECCHHHHHHHHHh-CCCEE---CCEE
Confidence 34789999999999999999999999999999999998743 77889999999999999999965 78888 4678
Q ss_pred EEEEcC
Q 027473 210 LRSFFP 215 (223)
Q Consensus 210 lrisfa 215 (223)
|+|++|
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999886
No 69
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=134.41 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecC-CCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~-~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
...++|||+|||+++|+++|+++|++|| |.+|+|+.++ .+ |+++|||||+|.+.++|++|+ .|||..++ +.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~---g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~---g~ 88 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNP---ERLKGFGYAEFEDLDSLLSAL-SLNEESLG---NR 88 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTT---CCCCSCEEEEECCHHHHHHHH-HTTTCCBT---TB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcC---CccCeEEEEEECCHHHHHHHH-hcCCCEEC---Ce
Confidence 4589999999999999999999999999 9999999886 22 677889999999999999999 89999994 67
Q ss_pred cEEEEcCcch
Q 027473 209 SLRSFFPNQF 218 (223)
Q Consensus 209 ~lrisfa~~~ 218 (223)
.|+|+||+++
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 8999999875
No 70
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.78 E-value=4.7e-19 Score=133.40 Aligned_cols=80 Identities=19% Similarity=0.252 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCC------CHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 130 DASSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~------teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
..+++|||+|||+++ |+++|+++|++||.|.+|+|+.. + |+++|||||+|.+.++|++|++.|||..++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~-~----g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE-D----GKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCB-T----TBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCC-C----CCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 347899999999999 78999999999999999999832 2 677889999999999999999999999995
Q ss_pred CCCCC-cEEEEcCcc
Q 027473 204 QAFLG-SLRSFFPNQ 217 (223)
Q Consensus 204 ~~~~~-~lrisfa~~ 217 (223)
+. .|+|+||+.
T Consensus 88 ---g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 ---KQHTFRVNLFTD 99 (105)
T ss_dssp ---TTCEEEEECSCC
T ss_pred ---CCceEEEEEcch
Confidence 55 899999974
No 71
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-19 Score=135.11 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||+++|+++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++||+ ++|..++ +..|+
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~----g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~---gr~l~ 82 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVE-TPGQKYK---ETDLL 82 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT----TSCCCEEEEEESSHHHHHHHHT-SSCCCCT---TTTCE
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC----CCCccEEEEEECCHHHHHHHHH-cCCCEEC---CEEEE
Confidence 68999999999999999999999999999999999874 5677799999999999999999 8999984 67899
Q ss_pred EEcCcchh
Q 027473 212 SFFPNQFF 219 (223)
Q Consensus 212 isfa~~~~ 219 (223)
|.|+....
T Consensus 83 V~~~~~~~ 90 (103)
T 1s79_A 83 ILFKDDYF 90 (103)
T ss_dssp EEEHHHHH
T ss_pred EEEchHHH
Confidence 99987754
No 72
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=127.03 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||+++|+++|+++|++| .|.+|+|+.+.. |+++|||||+|.+.++|++|++ |||..|+ +..|
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~A~~-~~g~~~~---gr~i 79 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAH----GNKTGYIFVDFSNEEEVKQALK-CNREYMG---GRYI 79 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTT----SCEEEEEEEECSSHHHHHHHHH-SCSEEET---TEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCC----CCCceEEEEEECCHHHHHHHHH-hCCceeC---CcEE
Confidence 47899999999999999999999999 999999999843 7788899999999999999999 9999994 6789
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|.||+++.
T Consensus 80 ~v~~a~~~~ 88 (91)
T 2dgw_A 80 EVFREKSGP 88 (91)
T ss_dssp EEEEESSCC
T ss_pred EEEECCcCC
Confidence 999998764
No 73
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=130.51 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc--CceecCCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--VMLTHQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln--G~~l~~~~~~ 208 (223)
++++|||+|||+++|+++|+++|++||.|.+|+|+.++ | ||||+|.+.++|++|++.|+ +..+ .+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~---~Gr 81 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK-----N----QAFLELATEEAAITMVNYYSAVTPHL---RNQ 81 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCEE---TTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceE---CCc
Confidence 47899999999999999999999999999999998763 4 99999999999999999875 5667 468
Q ss_pred cEEEEcCcchh
Q 027473 209 SLRSFFPNQFF 219 (223)
Q Consensus 209 ~lrisfa~~~~ 219 (223)
.|+|+||+.+-
T Consensus 82 ~l~V~~a~~~~ 92 (101)
T 2cq1_A 82 PIYIQYSNHKE 92 (101)
T ss_dssp ECEEEECSCSS
T ss_pred EEEEEEcCccc
Confidence 99999998764
No 74
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=3.8e-18 Score=131.51 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=75.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.++++|||+|||.++|+++|+++|++||.|++|+|+.+++ |+++|||||+|.+.++|++|++.|||..++ +..
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~----g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~ 105 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----GRSLGTADVHFERRADALKAMKQYKGVPLD---GRP 105 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSS----SSCCSEEEEEESSHHHHHHHHHHHTTEESS---SCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCC----CCEeeEEEEEECCHHHHHHHHHHcCCCEEC---CcE
Confidence 4588999999999999999999999999999999999873 667779999999999999999999999995 578
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||...
T Consensus 106 l~V~~a~~~ 114 (124)
T 2kt5_A 106 MDIQLVASQ 114 (124)
T ss_dssp EEEEEECCT
T ss_pred EEEEEeCCC
Confidence 999999765
No 75
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=8.1e-19 Score=133.22 Aligned_cols=78 Identities=14% Similarity=0.098 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||+++|+++|+++|++||.|.+|+|++.+ | ||||+|++.++|++|++.|||..+.- .+..|
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~AFVef~~~~~A~~Av~~ln~~~~~i-~Gr~i 89 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK-----R----QALVEFEDVLGACNAVNYAADNQIYI-AGHPA 89 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCEEE-TTEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhcCCCcee-CCcEE
Confidence 48899999999999999999999999999999998653 4 99999999999999999999986311 46899
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999864
No 76
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.4e-19 Score=135.76 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC--ceecCCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV--MLTHQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG--~~l~~~~~~ 208 (223)
++++|||+|||+++||++|+++|++||.|++|+|+.++ | ||||+|.+.++|++|++.|++ ..|. +.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----faFVeF~~~~~A~~Ai~~l~~~~~~l~---Gr 82 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSVTPVLR---GQ 82 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTSCCEET---TE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHhccCCceEC---CE
Confidence 47899999999999999999999999999999999864 4 999999999999999998875 6774 68
Q ss_pred cEEEEcCcchh
Q 027473 209 SLRSFFPNQFF 219 (223)
Q Consensus 209 ~lrisfa~~~~ 219 (223)
.|+|+||+.+.
T Consensus 83 ~l~V~~A~~~~ 93 (105)
T 1sjq_A 83 PIYIQFSNHKE 93 (105)
T ss_dssp ECCBCCCSSSS
T ss_pred EEEEEEcCCCC
Confidence 99999998764
No 77
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=127.84 Aligned_cols=82 Identities=21% Similarity=0.205 Sum_probs=73.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+ ++..| .+..
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~--~~~~~---~g~~ 84 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKT---GHSKGFGFVRFTEYETQVKVMS--QRHMI---DGRW 84 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSS---CSEEEEEEEEESSHHHHHHHHH--SCEEE---TTEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCC---CCccceEEEEECCHHHHHHHHH--cCCee---CCeE
Confidence 34789999999999999999999999999999999998743 7888999999999999999998 46777 4678
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|.||+.+-
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cqg_A 85 CDCKLPNSKQ 94 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEEecCCCC
Confidence 9999998764
No 78
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.2e-19 Score=134.24 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCe-eEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY-KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i-~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
.+.++|||+|||+++|+++|+++|++||.| .+|+|+.+++ |+++|||||+|.+.++|++||+. ||..|+ +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al~~-~~~~~~---gr 84 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNN----GQGLGQALVQFKNEDDARKSERL-HRKKLN---GR 84 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTT----SSCSSCEEEECSSHHHHHHHGGG-CSEEET---TE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCC----CCcceEEEEEECCHHHHHHHHHh-CCCccC---Ce
Confidence 347899999999999999999999999999 8899999873 67778999999999999999988 999994 68
Q ss_pred cEEEEcCcchh
Q 027473 209 SLRSFFPNQFF 219 (223)
Q Consensus 209 ~lrisfa~~~~ 219 (223)
.|+|+||+++-
T Consensus 85 ~i~v~~a~~~~ 95 (114)
T 2cpy_A 85 EAFVHVVTLED 95 (114)
T ss_dssp EEEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 89999998764
No 79
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=8.3e-19 Score=135.12 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCC---eeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~---i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
...++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++||+ |||..|+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--- 86 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE----GRQSGEAFVELESEDDVKLALK-KDRESMG--- 86 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS----SCEEEEEEEEBSSHHHHHHHGG-GTTEEET---
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCeEC---
Confidence 34789999999999999999999999999 89999999874 6788899999999999999999 9999994
Q ss_pred CCcEEEEcCcch
Q 027473 207 LGSLRSFFPNQF 218 (223)
Q Consensus 207 ~~~lrisfa~~~ 218 (223)
+..|+|.+|+.+
T Consensus 87 gr~i~V~~a~~~ 98 (118)
T 2db1_A 87 HRYIEVFKSHRT 98 (118)
T ss_dssp TEEEEEEEECHH
T ss_pred CeEEEEEECCHH
Confidence 678999998754
No 80
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.1e-19 Score=136.36 Aligned_cols=85 Identities=15% Similarity=0.181 Sum_probs=73.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCC
Q 027473 128 PPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFL 207 (223)
Q Consensus 128 p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~ 207 (223)
++...++|||+|||+++|+++|+++|++||.|.++.++.++.+ |+++|||||+|.+.++|++||+ |||..|+ +
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~---g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---g 93 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPN---GKATGEGFVEFRNEADYKAALC-RHKQYMG---N 93 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTT---SSEEEEEEEEBSSSHHHHHHHT-SCSBCST---T
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCC---CCCCeEEEEEECCHHHHHHHHH-hCCCeEC---C
Confidence 3345789999999999999999999999999998666655432 7888999999999999999999 9999994 6
Q ss_pred CcEEEEcCcchh
Q 027473 208 GSLRSFFPNQFF 219 (223)
Q Consensus 208 ~~lrisfa~~~~ 219 (223)
..|+|.+|+++-
T Consensus 94 r~i~V~~a~~~~ 105 (124)
T 1wel_A 94 RFIQVHPITKKG 105 (124)
T ss_dssp SCBEEEEECHHH
T ss_pred cEEEEEECCHHH
Confidence 789999998753
No 81
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=129.00 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~----~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
..++|||+|||+++|+++|+ ++|++||.|.+|+|+.++.+ +|||||+|.+.++|++|++.|||..++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~------rg~afV~f~~~~~A~~Ai~~l~g~~~~--- 78 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY------QLKAVVQMENLQDAIGAVNSLHRYKIG--- 78 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST------TCCEEEEESSHHHHHHHHHHHTTEEET---
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC------CeEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 37899999999999999999 99999999999999998753 349999999999999999999999995
Q ss_pred CCcEEEEcCcchh
Q 027473 207 LGSLRSFFPNQFF 219 (223)
Q Consensus 207 ~~~lrisfa~~~~ 219 (223)
+..|+|+||+.+.
T Consensus 79 gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 79 SKKILVSLATGAS 91 (96)
T ss_dssp TEEEEEEECCCSS
T ss_pred CeEEEEEEcCCCC
Confidence 6889999998753
No 82
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.77 E-value=2.2e-19 Score=140.27 Aligned_cols=81 Identities=15% Similarity=0.234 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE--EEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc----eecC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVM----LTHQ 204 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~--vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~----~l~~ 204 (223)
.+++|||+|||+++||++|+++|++||.|.. |+|+.++.+ |+++|||||+|.+. +|++|++.|||. .|+
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~t---g~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~- 96 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQT---QLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID- 96 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSS---SSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCC---CCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC-
Confidence 4789999999999999999999999999977 999999843 67788999999999 999999999999 885
Q ss_pred CCCCcEEEEcCcch
Q 027473 205 AFLGSLRSFFPNQF 218 (223)
Q Consensus 205 ~~~~~lrisfa~~~ 218 (223)
+..|+|+||+.+
T Consensus 97 --gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 --GKTINVEFAKGS 108 (131)
T ss_dssp --GCCCCCEECCCS
T ss_pred --CEEEEEEECCCC
Confidence 578999999765
No 83
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.8e-19 Score=133.68 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|| .|||..|+ +..|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l 96 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNS---RRSKGIAYVEFCEIQSVPLAI-GLTGQRLL---GVPI 96 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCS---SSCCCCEEEEESCGGGHHHHH-HHTTEEET---TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCC---CccCcEEEEEeCcHHHHHHHH-HcCCCEeC---CeEE
Confidence 3689999999999999999999999999999999998743 567779999999999999999 99999994 6789
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+-
T Consensus 97 ~V~~a~~~~ 105 (114)
T 2cq4_A 97 IVQASQAEK 105 (114)
T ss_dssp EEEEHHHHH
T ss_pred EEEecCCCc
Confidence 999998754
No 84
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=128.22 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||+++|+++|+++|++||.| +++.+.. |+++|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 83 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQN----GKSKGYAFIEFASFEDAKEALNSCNKREIE---GRAI 83 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSS----SCBCSEEEEECSSHHHHHHHHHHTSSEEET---TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCC----CCEeeEEEEEECCHHHHHHHHHHhCCCEeC---CeEE
Confidence 47899999999999999999999999976 5666533 667779999999999999999999999995 6889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+.
T Consensus 84 ~v~~a~~~~ 92 (101)
T 2fc9_A 84 RLELQGPRG 92 (101)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCC
Confidence 999998764
No 85
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=130.04 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=71.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC--CC
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA--FL 207 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~--~~ 207 (223)
...++|||+|||+++|+++|+++|++||.|.+|+|+.+ | ||||+|.+.++|++||+.|||..|+++ ..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------T----EEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------C----EEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34789999999999999999999999999999999887 3 999999999999999999999999642 12
Q ss_pred CcEEEEcCcchh
Q 027473 208 GSLRSFFPNQFF 219 (223)
Q Consensus 208 ~~lrisfa~~~~ 219 (223)
..|+|+||+.+-
T Consensus 83 ~~i~V~~a~~~~ 94 (108)
T 1x4c_A 83 AYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEESSCCS
T ss_pred eEEEEEeCCCCC
Confidence 689999998764
No 86
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=9.1e-19 Score=133.01 Aligned_cols=77 Identities=13% Similarity=0.269 Sum_probs=69.2
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce--ecCCC
Q 027473 130 DASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVML--THQAF 206 (223)
Q Consensus 130 ~~~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~--l~~~~ 206 (223)
+++++|||+|||+ ++||++|+++|++||.|.+|+|+.++ | ||||+|++.++|++|++.||+.. | .
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~~---~ 80 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-----N----EAFIEMATTEDAQAAVDYYTTTPALV---F 80 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-----S----CEEEEESSHHHHHHHHHHHHHSCCEE---T
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-----C----EEEEEECCHHHHHHHHHHHcCCCceE---C
Confidence 3488999999999 99999999999999999999998765 4 99999999999999999999754 6 4
Q ss_pred CCcEEEEcCcch
Q 027473 207 LGSLRSFFPNQF 218 (223)
Q Consensus 207 ~~~lrisfa~~~ 218 (223)
+..|+|+||+.+
T Consensus 81 Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 81 GKPVRVHLSQKY 92 (102)
T ss_dssp TEECEEEEECCC
T ss_pred CcEEEEEECCCC
Confidence 689999999853
No 87
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.77 E-value=6e-19 Score=124.17 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=68.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEE
Q 027473 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSF 213 (223)
Q Consensus 134 tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lris 213 (223)
+|||+|||+++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++ |||..++ +..|+|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~-~~~~~~~---g~~l~v~ 73 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTT---NRHRGFGFVTFESEDIVEKVCE-IHFHEIN---NKMVECK 73 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSS---TTSCBEEEEECSCHHHHHHHHS-SSCCCSS---SCCCEEE
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcCcEEEEEECCHHHHHHHHH-CCCCEEC---CEEEEEE
Confidence 5999999999999999999999999999999988743 6778899999999999999998 9999994 6789999
Q ss_pred cC
Q 027473 214 FP 215 (223)
Q Consensus 214 fa 215 (223)
||
T Consensus 74 ~A 75 (75)
T 2mss_A 74 KA 75 (75)
T ss_dssp CC
T ss_pred eC
Confidence 86
No 88
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=127.57 Aligned_cols=81 Identities=26% Similarity=0.300 Sum_probs=71.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||.++|+++|+++|++|+ +|+++.++.+ |+++|||||+|.+.++|++||+.|||..|+ +..
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 83 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRET---GSSKGFGFVDFNSEEDAKAAKEAMEDGEID---GNK 83 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSS---CSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCC---CCcCcEEEEEECCHHHHHHHHHHhCCCeEC---CeE
Confidence 3488999999999999999999999874 6788887633 678889999999999999999999999995 578
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+-
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998763
No 89
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.8e-18 Score=126.00 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||.++|+++|+++|++||.|.+|+++.++ | ||||+|.+.++|++|++.|||..+++ .+..|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~-----g----~afV~f~~~~~A~~A~~~l~g~~~~~-~g~~l 85 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD-----S----FAYIQYESLDAAQAACAKMRGFPLGG-PDRRL 85 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSS-----C----CEEEEESSHHHHHHHHHHHTTCBCSS-SSCBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCC-----C----EEEEEECCHHHHHHHHHHHCCCEeCC-CCcEE
Confidence 37899999999999999999999999999999998763 4 99999999999999999999999952 15789
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+.
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998764
No 90
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=137.01 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=71.3
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~----~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
++++|||+|||+++++++|+ ++|++||.|.+|++..+ |+++|||||+|.+.++|+.|++.|||..|.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~------~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~--- 98 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS------DDNSGKAYIVFATQESAQAFVEAFQGYPFQ--- 98 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC------CSSCCCEEEEESSHHHHHHHHHHSTTCCCT---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC------CCcCCEEEEEECCHHHHHHHHHHHCCCEeC---
Confidence 47899999999999999876 69999999999988542 566779999999999999999999999995
Q ss_pred CCcEEEEcCcchhh
Q 027473 207 LGSLRSFFPNQFFA 220 (223)
Q Consensus 207 ~~~lrisfa~~~~~ 220 (223)
+..|+|+||+.+-.
T Consensus 99 gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 99 GNPLVITFSETPQS 112 (127)
T ss_dssp TSCCEEEECCCCCH
T ss_pred CCEEEEEEccCcch
Confidence 57899999987643
No 91
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.5e-18 Score=127.42 Aligned_cols=77 Identities=26% Similarity=0.316 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|+.++ | ||||+|.+.++|++|++.|||..++ +..|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-----g----~afV~f~~~~~a~~a~~~l~g~~~~---g~~l 81 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-----G----FGFIRLETRTLAEIAKVELDNMPLR---GKQL 81 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-----T----EEEEECSSSHHHHHHHHHHTTCCBT---TBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhCCCEeC---CceE
Confidence 37899999999999999999999999999999998653 4 9999999999999999999999995 5889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+++-
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpj_A 82 RVRFACHSA 90 (99)
T ss_dssp EEEESSCCS
T ss_pred EEEEcCCCC
Confidence 999998764
No 92
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=1.4e-18 Score=138.75 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|. +..|
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 142 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT---KESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GREL 142 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSC---TTSCCEEEEEESBHHHHHHHHHHSTTEESS---SSEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CccceEEEEEECCHHHHHHHHHHhCCCEEC---CeEE
Confidence 3789999999999999999999999999999999998733 677889999999999999999999999994 6899
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 143 ~v~~a~~~ 150 (158)
T 2kn4_A 143 RVQMARYG 150 (158)
T ss_dssp EEEEECCS
T ss_pred EEEECCCC
Confidence 99999865
No 93
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=129.28 Aligned_cols=80 Identities=20% Similarity=0.246 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE-EEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~-vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
..++|||+|||+++|+++|+++|++||.|.+ |+|+.+++ |+++|||||+|.+.++|++||+. +|..++ +..
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~----g~~~G~afV~F~~~~~a~~A~~~-~~~~~~---gr~ 85 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQ----GRSTGEAFVQFASQEIAEKALKK-HKERIG---HRY 85 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSS----SCBCSEEEEEESSHHHHHHHHTT-TTCCSS---SSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCC----CCcceEEEEEECCHHHHHHHHHh-CcchhC---CcE
Confidence 4789999999999999999999999999987 88888753 67778999999999999999998 999884 567
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|.+++++
T Consensus 86 i~v~~~~~~ 94 (104)
T 1wg5_A 86 IEIFKSSRA 94 (104)
T ss_dssp CEEEEECTT
T ss_pred EEEEECCHH
Confidence 888887754
No 94
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=129.85 Aligned_cols=76 Identities=12% Similarity=0.055 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce--ecCCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVML--THQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~--l~~~~~~ 208 (223)
++++|||+|||+++||++|+++|++||.|.+|+|+.++ | ||||+|.+.++|++|++.|++.. | .+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~i---~Gr 81 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK-----R----QALVEFENIDSAKECVTFAADVPVYI---AGQ 81 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHHHSCCBS---SSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-----C----EEEEEECCHHHHHHHHHHhccCCceE---CCE
Confidence 37899999999999999999999999999999998753 4 99999999999999999998764 5 468
Q ss_pred cEEEEcCcch
Q 027473 209 SLRSFFPNQF 218 (223)
Q Consensus 209 ~lrisfa~~~ 218 (223)
.|+|+||+.+
T Consensus 82 ~l~V~~a~~~ 91 (104)
T 1wex_A 82 QAFFNYSTSK 91 (104)
T ss_dssp BCEEEECSSS
T ss_pred EEEEEEccCc
Confidence 8999999865
No 95
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=2.2e-18 Score=139.55 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=75.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||+++|+++|+++|++||.|..|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|. +..|
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l 144 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRT---GFSKGYALVEYETHKQALAAKEALNGAEIM---GQTI 144 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---SSEEEEEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCC---CcEeeEEEEEECCHHHHHHHHHHhCCCEEC---CEEE
Confidence 4789999999999999999999999999999999998743 788899999999999999999999999994 6889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|.||..+.
T Consensus 145 ~V~~a~~~~ 153 (165)
T 1rk8_A 145 QVDWCFVKG 153 (165)
T ss_dssp EEEESEECC
T ss_pred EEEEecCCC
Confidence 999997653
No 96
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=131.10 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=72.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCC-eeEEEEe-ecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc--CceecCCCC
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLV-SKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--VMLTHQAFL 207 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~-i~~vrl~-~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln--G~~l~~~~~ 207 (223)
+++|||+|||+++|+++|+++|++||. |.+|+|+ .++.+ |+++|||||+|.+.++|++|++.|| +..++ +
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~---g 81 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADK---MKNRGFAFVEYESHRAAAMARRKLMPGRIQLW---G 81 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTT---TTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT---T
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCC---CCcCcEEEEEecCHHHHHHHHHHhhCCCceec---C
Confidence 789999999999999999999999998 9999998 56532 5677899999999999999999996 58884 5
Q ss_pred CcEEEEcCcchh
Q 027473 208 GSLRSFFPNQFF 219 (223)
Q Consensus 208 ~~lrisfa~~~~ 219 (223)
..|+|+||+.+-
T Consensus 82 ~~l~V~~a~~~~ 93 (109)
T 2dis_A 82 HQIAVDWAEPEI 93 (109)
T ss_dssp BCCEEEESCSSC
T ss_pred CeEEEEEcCCCC
Confidence 789999998653
No 97
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=5e-19 Score=139.65 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~---g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~---g~~l 119 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT---KESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GREL 119 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS---SSCCSCCEEECSCHHHHHHHHTTTTTCCSS---SSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 4789999999999999999999999999999999988733 677789999999999999999999999995 5789
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 120 ~V~~a~~~ 127 (135)
T 2lea_A 120 RVQMARYG 127 (135)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999865
No 98
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2e-18 Score=131.06 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=72.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.+ |..+ .+..
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~t---g~~kg~afV~f~~~~~A~~Ai~~~-~~~l---~g~~ 95 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT---KRSRGFGFVTFMDQAGVDKVLAQS-RHEL---DSKT 95 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTT---CCCTTCEEEEESSHHHHHHHHHSS-CEEE---TTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCC---CCcCcEEEEEECCHHHHHHHHHHC-CCcC---CCEE
Confidence 35789999999999999999999999999999999998743 667789999999999999999987 4778 4688
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||..+-
T Consensus 96 l~V~~a~~~~ 105 (109)
T 2rs2_A 96 IDPKVAFPRR 105 (109)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999998764
No 99
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=2.4e-19 Score=130.41 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=70.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.+ |++|++.|||..++ +..|+|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~-a~~a~~~l~g~~~~---g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRET---KKPKGFGFVEMQEES-VSEAIAKLDNTDFM---GRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSS---CCCCEEEEEEECTTH-HHHHHHTSCSSCCS---SSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCC---CCcceEEEEEECCHH-HHHHHHHhCCCEEC---CeEEEE
Confidence 58999999999999999999999999999999998743 677889999999999 99999999999995 678999
Q ss_pred EcCcchh
Q 027473 213 FFPNQFF 219 (223)
Q Consensus 213 sfa~~~~ 219 (223)
+||+.+.
T Consensus 75 ~~a~~~~ 81 (90)
T 2ki2_A 75 TEANPKK 81 (90)
T ss_dssp EEC----
T ss_pred EEcCCCC
Confidence 9998764
No 100
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=122.68 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHh-cCceecCCCCCc
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL-QVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L-nG~~l~~~~~~~ 209 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+++.++ | ||||+|.+.++|++|++.| +|..++ +..
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-----g----~afV~f~~~~~A~~a~~~l~~~~~~~---g~~ 78 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-----Q----CAFIQFATRQAAEVAAEKSFNKLIVN---GRR 78 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-----T----EEEEEESSHHHHHHHHHTTTTTCEET---TEE
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-----C----EEEEEECCHHHHHHHHHHhcCCeeEC---CCE
Confidence 47899999999999999999999999999999999764 4 9999999999999999999 999995 578
Q ss_pred EEEEcCc
Q 027473 210 LRSFFPN 216 (223)
Q Consensus 210 lrisfa~ 216 (223)
|+|+||+
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999985
No 101
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=129.82 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||+++||++|+++|++|| +++|+|+.+++ |+++|||||+|.+.++|++||+ +|+..|+ +..|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr~i 84 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPD----GRVTGEADVEFATHEDAVAAMA-KDKANMQ---HRYV 84 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSS----SCEEEEEEEECSSSHHHHHHHT-TSSCCSS---SSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCC----CCEeeEEEEEECCHHHHHHHHH-hCCCeEC---CcEE
Confidence 378999999999999999999999999 45999999973 7888999999999999999995 7999885 5678
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|.++++.
T Consensus 85 ~V~~~~~~ 92 (102)
T 1wez_A 85 ELFLNSTA 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99887764
No 102
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.76 E-value=9e-19 Score=128.85 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~----~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
++++|||+|||.++|+++|+ ++|++||.|.+|+++.. |+++|||||+|.+.++|++|++.|||..++
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~------~~~~g~afV~f~~~~~A~~A~~~l~g~~~~--- 77 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFY--- 77 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH------HHHTTCEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC------CCcCcEEEEEeCCHHHHHHHHHHhCCCEEC---
Confidence 47899999999999999999 99999999999998743 455669999999999999999999999994
Q ss_pred CCcEEEEcCcchhh
Q 027473 207 LGSLRSFFPNQFFA 220 (223)
Q Consensus 207 ~~~lrisfa~~~~~ 220 (223)
+..|+|+||+.+..
T Consensus 78 g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 78 DKPMRIQYAKTDSD 91 (97)
T ss_dssp TEECEEEECSSCCT
T ss_pred CcEEEEEEccCCCc
Confidence 68899999987654
No 103
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8e-19 Score=123.73 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=68.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
++|||+|||.++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.++ ..++ +..|+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~a~~~~~-~~~~---g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLT---KRSRGFGFVTFMDQAGVDKVLAQSR-HELD---SKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCS---SSCSSEEEECCCCTTHHHHHHHTTT-CCCS---SCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCC---CCcCceEEEEEcCHHHHHHHHHhCC-CccC---CEEEEE
Confidence 48999999999999999999999999999999998743 6777899999999999999999999 7784 578999
Q ss_pred EcC
Q 027473 213 FFP 215 (223)
Q Consensus 213 sfa 215 (223)
+||
T Consensus 74 ~~a 76 (77)
T 1uaw_A 74 KVA 76 (77)
T ss_dssp EEC
T ss_pred Eec
Confidence 887
No 104
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=8.5e-19 Score=125.67 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=64.0
Q ss_pred CCEEEEcCCCCCC------CHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC
Q 027473 132 SSTLFVEGLPSDC------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA 205 (223)
Q Consensus 132 ~~tLfVgnLp~~~------teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (223)
+++|||+|||.++ |+++|+++|++||.|.+|+|+.. + |+++|||||+|.+.++|++|++.|||..+++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~-~----g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g- 74 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEE-D----GKTKGYIFLEYASPAHAVDAVKNADGYKLDK- 74 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCB-T----TBCCCEEEEEESSHHHHHHHHTTSSSCCCSS-
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCC-C----CcEeEEEEEEECCHHHHHHHHHHhcCcccCC-
Confidence 4699999999999 78999999999999999998832 2 6778899999999999999999999999964
Q ss_pred CCC-cEEE
Q 027473 206 FLG-SLRS 212 (223)
Q Consensus 206 ~~~-~lri 212 (223)
. .|+|
T Consensus 75 --~~~l~V 80 (81)
T 2krb_A 75 --QHTFRV 80 (81)
T ss_dssp --SSCCCC
T ss_pred --ceeEEe
Confidence 4 5554
No 105
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-18 Score=130.66 Aligned_cols=82 Identities=15% Similarity=0.129 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+. +|..|+ +..|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g~~l 98 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPAS---KRSRGFGFVTFSSMAEVDAAMAA-RPHSID---GRVV 98 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTT---SSCCSEEEEECSSHHHHHHHHTS-CSEEET---TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCC---CCcCceEEEEeCCHHHHHHHHHh-CCcEEC---CEEE
Confidence 4689999999999999999999999999999999998743 66778999999999999999998 999994 6889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+-
T Consensus 99 ~V~~a~~~~ 107 (116)
T 1x4b_A 99 EPKRAVARE 107 (116)
T ss_dssp EEECCSSCC
T ss_pred EEEECCCCc
Confidence 999998763
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=133.22 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC--ceecCCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV--MLTHQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG--~~l~~~~~~ 208 (223)
++++|||+|||+++||++|+++|++||.|++|+|+.++ | ||||+|++.++|++|++.|++ ..| .+.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-----G----~AFVeF~~~e~A~~Ai~~l~~~~~~l---~Gr 97 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-----N----QAFIEMNTEEAANTMVNYYTSVTPVL---RGQ 97 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-----T----EEEEECSCHHHHHHHHHHHHHHCCCB---TTB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhccCCceE---CCe
Confidence 47899999999999999999999999999999999874 4 999999999999999999985 467 468
Q ss_pred cEEEEcCcch
Q 027473 209 SLRSFFPNQF 218 (223)
Q Consensus 209 ~lrisfa~~~ 218 (223)
.|+|+||+.+
T Consensus 98 ~l~V~~a~~k 107 (119)
T 2ad9_A 98 PIYIQFSNHK 107 (119)
T ss_dssp CCEEEECSSS
T ss_pred EEEEEEccCC
Confidence 8999999865
No 107
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=2.5e-18 Score=132.19 Aligned_cols=81 Identities=9% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|+ .|||..|+ +..|+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 108 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFS---GHPKGYAYIEFAERNSVDAAV-AMDETVFR---GRTIK 108 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTT---SSCEEEEEEEESSHHHHHHHH-TTTTCEET---TEECE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC---CCcccEEEEEECCHHHHHHHH-hcCCCeEC---CeEEE
Confidence 689999999999999999999999999999999998643 678889999999999999999 89999994 68899
Q ss_pred EEcCcchh
Q 027473 212 SFFPNQFF 219 (223)
Q Consensus 212 isfa~~~~ 219 (223)
|+|++...
T Consensus 109 V~~a~~~~ 116 (124)
T 2jwn_A 109 VLPKRTNM 116 (124)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998654
No 108
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=123.88 Aligned_cols=75 Identities=19% Similarity=0.271 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+++.+ ||||+|.+.++|++|++.|||..++ +..|
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 74 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----------YAFVHMERAEDAVEAIRGLDNTEFQ---GKRM 74 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-----------EEEEEESCHHHHHHHHHHHTTEEET---TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-----------EEEEEECCHHHHHHHHHHhCCCeeC---CcEE
Confidence 4789999999999999999999999999999999743 9999999999999999999999995 6889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+.
T Consensus 75 ~V~~a~~~~ 83 (92)
T 2dgt_A 75 HVQLSTSRL 83 (92)
T ss_dssp EEEESSCCC
T ss_pred EEEEccCCC
Confidence 999998764
No 109
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=1.9e-18 Score=147.85 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=74.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC--CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG--~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
..++|||+|||+++|+++|+++|++|| .|++|+|+.++.+ |++||||||+|.+.++|++||+.|||+.|+ +.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~t---g~skGfaFV~f~~~~~a~~Ai~~lng~~~~---Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN---GQSKGFALVGVGSEASSKKLMDLLPKRELH---GQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTT---CCEEEEEEEEESCTTHHHHHHTTSTTSCBT---TB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCC---CccceEEEEEECCHHHHHHHHHHcCCCeEC---CE
Confidence 367999999999999999999999999 9999999999743 788999999999999999999999999995 67
Q ss_pred cEEEEcCcch
Q 027473 209 SLRSFFPNQF 218 (223)
Q Consensus 209 ~lrisfa~~~ 218 (223)
.|+|+||+..
T Consensus 141 ~l~V~~a~~~ 150 (229)
T 3q2s_C 141 NPVVTPVNKQ 150 (229)
T ss_dssp CCEEEECCHH
T ss_pred EeEEEECCCC
Confidence 8999999865
No 110
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=7.7e-18 Score=122.75 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|+ + | ||||+|.+.++|++|++.|||..++ +..|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~-----g----~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 72 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--K-----N----YGFVHIEDKTAAEDAIRNLHHYKLH---GVNI 72 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--T-----T----EEEEEESSHHHHHHHHHHHTTCBCS---SCBC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--C-----C----EEEEEECCHHHHHHHHHHhcCCccC---CcEE
Confidence 47899999999999999999999999999999998 1 4 9999999999999999999999995 6789
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+.
T Consensus 73 ~v~~a~~~~ 81 (90)
T 2dnq_A 73 NVEASKNKS 81 (90)
T ss_dssp EEECSSCCC
T ss_pred EEEECCCCC
Confidence 999998764
No 111
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=4.8e-18 Score=142.12 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+.+||||+|||+++||++|+++|++||.|++|+|+.++.+ |+++|||||+|.+.++|++||+.|||..+. +..
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~~G~afV~F~~~~~A~~Ai~~~~~~~~~---g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMIT---RRSLGYAYVNFQQPADAERALDTMNFDVIK---GKP 86 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCC---CCccccccceeCCHHHHHHHHHHhhhhhcC---Ccc
Confidence 35789999999999999999999999999999999998743 678889999999999999999999999994 578
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|++.++...
T Consensus 87 i~~~~~~~~ 95 (213)
T 4f02_A 87 VRIMWSQRD 95 (213)
T ss_dssp CEEEECCCC
T ss_pred ccccccccc
Confidence 899988754
No 112
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=2.9e-18 Score=136.36 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCC---eeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFL 207 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~---i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~ 207 (223)
..++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++||+ |||..|+ +
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~----g~srG~aFV~F~~~e~a~~Al~-~~g~~l~---g 114 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE----GRQSGEAFVELGSEDDVKMALK-KDRESMG---H 114 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS----SCEEEEEEEECSSHHHHHHHHT-TTEEESS---S
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC----CCCCeEEEEEECCHHHHHHHHh-cCCCEEC---C
Confidence 4789999999999999999999999999 89999999874 6788899999999999999999 9999994 6
Q ss_pred CcEEEEcCcch
Q 027473 208 GSLRSFFPNQF 218 (223)
Q Consensus 208 ~~lrisfa~~~ 218 (223)
..|+|.+|+++
T Consensus 115 r~i~V~~a~~~ 125 (136)
T 2hgl_A 115 RYIEVFKSHRT 125 (136)
T ss_dssp SEEEEEECCHH
T ss_pred EEEEEEECChH
Confidence 78999999765
No 113
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=130.69 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=72.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCC---eeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVG---YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~---i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
+..++|||+|||+++|+++|+++|++||. |.+|+|+.++. |+++|||||+|.+.++|++||+ |||..++
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~----g~~~G~afV~F~~~~~a~~Al~-~~~~~~~--- 80 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD----GKRRGDALIEMESEQDVQKALE-KHRMYMG--- 80 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT----STTCSEEEEEBSSHHHHHHHHT-TTTCCSS---
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHH-hCcceeC---
Confidence 45789999999999999999999999988 89999998874 5677799999999999999999 9998884
Q ss_pred CCcEEEEcCcch
Q 027473 207 LGSLRSFFPNQF 218 (223)
Q Consensus 207 ~~~lrisfa~~~ 218 (223)
+..|+|.+|+++
T Consensus 81 gr~i~V~~a~~~ 92 (107)
T 2lmi_A 81 QRYVEVYEINNE 92 (107)
T ss_dssp SSCCCCEECCHH
T ss_pred CeEEEEEECCHH
Confidence 578999998864
No 114
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.9e-18 Score=124.20 Aligned_cols=78 Identities=22% Similarity=0.313 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
..+++|||+|||+++|+++|+++|++||.|. ++++.++ ++|||||+|.+.++|++|++.|||..|+ +..
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~-------~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 85 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG-------PRRRAFLHYPDSAAAQQAVSCLQGLRLG---TDT 85 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET-------TTTEEEEECSSHHHHHHHHHHHTTCCSS---SSC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC-------CCcEEEEEECCHHHHHHHHHHhCCCEEC---CcE
Confidence 3478999999999999999999999999997 7777653 3349999999999999999999999995 578
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+.+
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999999875
No 115
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.4e-18 Score=126.39 Aligned_cols=76 Identities=17% Similarity=0.311 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
.+++|||+|||.++|+++|+++|++||.|.+|+++..+ | ||||+|.+.++|++|++.|||..++ +..|
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l 93 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEK-----G----CCFIKYDTHEQAAVCIVALANFPFQ---GRNL 93 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhCCCeEC---CeEE
Confidence 37899999999999999999999999999999998432 4 9999999999999999999999995 6789
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 94 ~V~~a~~~ 101 (101)
T 2la4_A 94 RTGWGKER 101 (101)
T ss_dssp CCCBCCCC
T ss_pred EEEeccCC
Confidence 99999864
No 116
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=6.6e-19 Score=130.88 Aligned_cols=80 Identities=18% Similarity=0.193 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||+++|+++|+++|++||.|.+ +++.++.. |+++|||||+|.+.++|++||+ |||..|+ +..|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~---g~~~g~afV~f~~~~~a~~A~~-l~g~~~~---g~~l 87 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRT---GTNRKFGYVDFESAEDLEKALE-LTGLKVF---GNEI 87 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEE---ETTTTEEEEEESSHHHHHHHHH-GGGCCBT---TBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCC---CCcCcEEEEEECCHHHHHHHHh-cCCcEEC---CcEE
Confidence 4789999999999999999999999999988 55555422 5667799999999999999999 9999995 6789
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 88 ~V~~a~~~ 95 (101)
T 1fj7_A 88 KLEKPKGR 95 (101)
T ss_dssp EEECCSCC
T ss_pred EEEEcCCC
Confidence 99999875
No 117
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.2e-18 Score=129.16 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=70.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
..+|||+|||+++|+++|+++|++| .|.+|+|+.++. |+++|||||+|.+.++|++|| .|||..|+ +..|+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~----g~~~G~afV~F~~~~~a~~Al-~~~~~~~~---gr~i~ 86 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV----GRNNGNGLVKFLSPQDTFEAL-KRNRMLMI---QRYVE 86 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT----CCCCSEEEEECSSHHHHHHHH-HTTTEEET---TEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC----CCCCeEEEEEECCHHHHHHHH-hcCCCeEC---CeEEE
Confidence 5799999999999999999999999 899999999874 667779999999999999999 69999994 57899
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|..|+.+
T Consensus 87 V~~a~~~ 93 (109)
T 2dnn_A 87 VSPATER 93 (109)
T ss_dssp EEECCHH
T ss_pred EEECCcc
Confidence 9888754
No 118
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.74 E-value=8.5e-18 Score=133.77 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||.++|+++|+++|++||.|.+|+++.++. |+++|||||+|.+.++|++|++.|||..+.+..+..|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD----GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC----CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 478999999999999999999999999999999999864 6788899999999999999999999998875556899
Q ss_pred EEEcCc
Q 027473 211 RSFFPN 216 (223)
Q Consensus 211 risfa~ 216 (223)
+|+||+
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999996
No 119
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=128.68 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=70.0
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCe----eEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGY----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA 205 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i----~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (223)
.++++|||+|||.++|+++|+++|++||.| ..+++.. |+++|||||+|.+.++|++|++.|||..|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~-------g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~-- 93 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMT-------GRMRGQAFITFPNKEIAWQALHLVNGYKLY-- 93 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEEC-------SSSCSEEEEECSSHHHHHHHHHHSTTCBCS--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCC-------CccceEEEEEECCHHHHHHHHHHhCCCEeC--
Confidence 457899999999999999999999999999 4555552 556679999999999999999999999994
Q ss_pred CCCcEEEEcCcchh
Q 027473 206 FLGSLRSFFPNQFF 219 (223)
Q Consensus 206 ~~~~lrisfa~~~~ 219 (223)
+..|+|+||+.+-
T Consensus 94 -g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 94 -GKILVIEFGKNKK 106 (115)
T ss_dssp -SCBCEEEECCCCS
T ss_pred -CcEEEEEEccCCC
Confidence 6789999998763
No 120
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.1e-17 Score=130.12 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=94.0
Q ss_pred CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHH
Q 027473 73 ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (223)
Q Consensus 73 ~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~ 151 (223)
|+.|.+. ++..|+. .++|..+.++.+...-... .......+.++|||+|||.++|+++|++
T Consensus 45 fV~f~~~~~a~~A~~-~l~~~~~~g~~i~v~~~~~-----------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~ 106 (166)
T 3md3_A 45 FVEYHQSHDANIALQ-TLNGKQIENNIVKINWAFQ-----------------SQQSSSDDTFNLFVGDLNVNVDDETLRN 106 (166)
T ss_dssp EEEESSHHHHHHHHH-HHTTCEETTEECEEEECCC-----------------CCCCCCTTCEEEEEESCCTTCCHHHHHH
T ss_pred EEEeCCHHHHHHHHH-HcCCCccCCCeeEEEEcCC-----------------CCCCCCCCCceEEECCCCCCCCHHHHHH
Confidence 6677775 4445775 6788777665433211100 0011223478999999999999999999
Q ss_pred hhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCcc
Q 027473 152 IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPNQ 217 (223)
Q Consensus 152 lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~~ 217 (223)
+|++||.|.+|+++.++.+ |+++|||||+|.+.++|.+|++.|||..++ +..|+|+||++
T Consensus 107 ~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~v~~a~~ 166 (166)
T 3md3_A 107 AFKDFPSYLSGHVMWDMQT---GSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPLRINWAAK 166 (166)
T ss_dssp HHTTSTTEEEEEEEECTTT---CCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECEEEESCC
T ss_pred HHhccCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCCccC---CcEEEEEecCC
Confidence 9999999999999998643 778899999999999999999999999994 68999999974
No 121
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=6.7e-18 Score=125.58 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=68.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+..|||+||++.+||++|+++|.+||+|++++++..+ | ||||+|.++++|++|++.|||.++ .+.+|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~k-----G----faFVey~~~~eA~~Ai~~Ln~~~l---~gr~I~ 74 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQ-----G----IALCKYTTREEANKAQMALNNCVL---ANTTIF 74 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTEEE---TTEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCC-----c----EEEEEECCHHHHHHHHHHhcCCEE---CCcEEE
Confidence 6799999999999999999999999999999997632 4 999999999999999999999999 478999
Q ss_pred EEcCc
Q 027473 212 SFFPN 216 (223)
Q Consensus 212 isfa~ 216 (223)
|+||+
T Consensus 75 V~~A~ 79 (89)
T 2wbr_A 75 AESPS 79 (89)
T ss_dssp EECCC
T ss_pred EEECC
Confidence 99996
No 122
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7.7e-18 Score=122.74 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||+++|+++|+++|++||.|.+|+|+.+ ||||+|.+.++|++|++.|||..++ +..|
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-----------~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 73 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-----------YAFVHMEKEADAKAAIAQLNGKEVK---GKRI 73 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-----------CEEEEESCHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-----------EEEEEECCHHHHHHHHHHhCCCEEC---CcEE
Confidence 4789999999999999999999999999999999743 9999999999999999999999994 6889
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 74 ~v~~a~~~ 81 (90)
T 2dnp_A 74 NVELSTKG 81 (90)
T ss_dssp EEEESCCC
T ss_pred EEEECCCC
Confidence 99999875
No 123
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=126.34 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||.++|+++|+++|++||.|.+|+|+.++ | ||||+|.+.++|++|++.|||..|+ +..|
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 91 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-----G----YSFVRFSTHESAAHAIVSVNGTTIE---GHVV 91 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHcCCCEEC---CcEE
Confidence 47899999999999999999999999999999999873 4 9999999999999999999999995 6789
Q ss_pred EEEcCcchhh
Q 027473 211 RSFFPNQFFA 220 (223)
Q Consensus 211 risfa~~~~~ 220 (223)
+|+||+.+..
T Consensus 92 ~v~~a~~~~~ 101 (109)
T 1x4g_A 92 KCYWGKESPD 101 (109)
T ss_dssp EEECCCCCCS
T ss_pred EEEecCCCCC
Confidence 9999987653
No 124
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=1.2e-17 Score=124.82 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|.+|+|++ | ||||+|.+.++|++|++.|||..|+ +..|
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~----~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 75 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------D----YAFIHFDERDGAVKAMEEMNGKDLE---GENI 75 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------S----CEEEEESSHHHHHHHHHHHTTEEET---TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------C----EEEEEeCCHHHHHHHHHHHCCCccC---CCEE
Confidence 378999999999999999999999999999999873 3 9999999999999999999999995 6799
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+.
T Consensus 76 ~v~~a~~~~ 84 (103)
T 2dgu_A 76 EIVFAKPPD 84 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCc
Confidence 999998754
No 125
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.8e-17 Score=121.01 Aligned_cols=75 Identities=19% Similarity=0.233 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCC--CCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~f--G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
++++|||+|||+++|+++|+++|++| |.|.+|++.+ | ||||+|.+.++|++|++.|||..|+ +.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~-------g----~afV~f~~~~~A~~A~~~l~g~~~~---g~ 79 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR-------D----YAFVHFSNREDAVEAMKALNGKVLD---GS 79 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS-------S----EEEEEESSHHHHHHHHHHHSSEEET---TE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC-------C----eEEEEeCCHHHHHHHHHHhCCCEeC---Cc
Confidence 47899999999999999999999999 9999998752 3 9999999999999999999999995 67
Q ss_pred cEEEEcCcchh
Q 027473 209 SLRSFFPNQFF 219 (223)
Q Consensus 209 ~lrisfa~~~~ 219 (223)
.|+|+||+.+-
T Consensus 80 ~l~v~~a~~~~ 90 (99)
T 2cpd_A 80 PIEVTLAKPVD 90 (99)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCC
Confidence 99999998753
No 126
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=126.56 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=69.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
++|||+|||.++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++|++.|||..++ +..|+|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 69 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--------PPGFAFVEFEDPRDAEDAVRGLDGKVIC---GSRVRV 69 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--------SSSEEEEECSSHHHHHHHHHHHHHSCSS---SCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------CCCEEEEEECCHHHHHHHHHHHCCCeEC---CcEEEE
Confidence 58999999999999999999999999999999987 1239999999999999999999999995 567999
Q ss_pred EcCcchh
Q 027473 213 FFPNQFF 219 (223)
Q Consensus 213 sfa~~~~ 219 (223)
+||+.+.
T Consensus 70 ~~a~~~~ 76 (101)
T 2hvz_A 70 ELSTGMP 76 (101)
T ss_dssp EESSSCC
T ss_pred EEccCCC
Confidence 9998754
No 127
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=5.9e-18 Score=124.42 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=68.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||.++|+++|+++|++||.|..+ .. . |+++|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~-~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 83 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQ-D----GKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSV 83 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EE-T----TEEEEEEEEEESSHHHHHHHHHHTTEEEET---TEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CC-C----CCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeEE
Confidence 47899999999999999999999999987665 22 1 677889999999999999999999999994 6789
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+-
T Consensus 84 ~v~~a~~~~ 92 (96)
T 1fjc_A 84 SLYYTGEKG 92 (96)
T ss_dssp EEEECSSSC
T ss_pred EEEEcCCCC
Confidence 999998753
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=128.06 Aligned_cols=76 Identities=13% Similarity=0.204 Sum_probs=67.4
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc--eecCCCC
Q 027473 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVM--LTHQAFL 207 (223)
Q Consensus 131 ~~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~--~l~~~~~ 207 (223)
++++|||+|||++ +|+++|+++|++||.|.+|+|++.+ | ||||+|.+.++|++|++.||+. .| .+
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k-----g----~aFVef~~~~~A~~Ai~~l~~~~~~l---~G 91 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-----S----QAFIEMETREDAMAMVDHCLKKALWF---QG 91 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHHHSCCCS---SS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC-----C----EEEEEECCHHHHHHHHHHhccCCceE---CC
Confidence 4889999999998 9999999999999999999997543 4 9999999999999999999764 46 46
Q ss_pred CcEEEEcCcch
Q 027473 208 GSLRSFFPNQF 218 (223)
Q Consensus 208 ~~lrisfa~~~ 218 (223)
..|+|+||+.+
T Consensus 92 r~l~V~~a~~~ 102 (112)
T 1x4f_A 92 RCVKVDLSEKY 102 (112)
T ss_dssp SCCEEEEECSC
T ss_pred EEEEEEECccc
Confidence 88999999765
No 129
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=7.5e-18 Score=129.62 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
..++|||+|||+++|+++|+++|++|| .|..|+|+.++ ++|||||+|.+.++|++||+.|||..++ +..
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~-------~rGfaFV~F~~~e~A~~Ai~~lng~~l~---Gr~ 96 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD-------FDGTGALEFPSEEILVEALERLNNIEFR---GSV 96 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS-------SSCCEEEEESSHHHHHHHHHHTTTEEET---TEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC-------CCCEEEEEECCHHHHHHHHHHcCCCEEC---CeE
Confidence 478999999999999999999999999 89999986542 3449999999999999999999999994 678
Q ss_pred EEEEcCcchhh
Q 027473 210 LRSFFPNQFFA 220 (223)
Q Consensus 210 lrisfa~~~~~ 220 (223)
|+|++++.+..
T Consensus 97 i~V~~a~~~p~ 107 (111)
T 2jvr_A 97 ITVERDDNPPP 107 (111)
T ss_dssp EEEEESCC---
T ss_pred EEEEECCCCCC
Confidence 99999987754
No 130
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3.7e-17 Score=128.38 Aligned_cols=77 Identities=14% Similarity=0.103 Sum_probs=67.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceE-EEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL-CFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~-aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
-.|||+||++.+|+++|+++|++||.|++|+|+.. + | | |||+|.+.++|+.|++.|||..|.+. ...|+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~-G----f~aFVef~~~~~A~~A~~~LnG~~i~g~-~~~l~ 95 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----N-G----IQAMVEFESVLCAQKAKAALNGADIYAG-CCTLK 95 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----S-S----EEEEEEESSHHHHHHHHHHHTTCCCBTT-BSEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----C-C----CEEEEEECCHHHHHHHHHHhCCCEecCC-CeEEE
Confidence 34689999999999999999999999999999753 1 3 7 99999999999999999999999642 35899
Q ss_pred EEcCcchh
Q 027473 212 SFFPNQFF 219 (223)
Q Consensus 212 isfa~~~~ 219 (223)
|+||+.+-
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99998763
No 131
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=2.8e-17 Score=129.57 Aligned_cols=82 Identities=20% Similarity=0.368 Sum_probs=75.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+++|||+|||.++|+++|+++|++||.|.+|+++.++.. |+++|||||+|.+.++|++|++.|||..+. +..|+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~ 75 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKIT---GQSLGYGFVNYIDPKDAEKAINTLNGLRLQ---TKTIK 75 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---CcceeEEEEEECCHHHHHHHHHHcCCCccC---CceEE
Confidence 689999999999999999999999999999999998733 778889999999999999999999999994 67899
Q ss_pred EEcCcchh
Q 027473 212 SFFPNQFF 219 (223)
Q Consensus 212 isfa~~~~ 219 (223)
|+|++...
T Consensus 76 v~~~~~~~ 83 (167)
T 1fxl_A 76 VSYARPSS 83 (167)
T ss_dssp EEECCCCC
T ss_pred EEecCCCc
Confidence 99987643
No 132
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=1.4e-17 Score=132.38 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||+++|+++|+++|++||.|.+|+|+.+. +|||||+|.+.++|++|++.|||..|+ +..|
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~--------~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 140 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP--------PGFAFVEFEDPRDAADAVRELDGRTLC---GCRV 140 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSS--------CSEEEEEESSHHHHHHHHHHHSSSCSS---SSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCC--------CcEEEEEECCHHHHHHHHHHcCCCEEC---CeEE
Confidence 47899999999999999999999999999999998872 239999999999999999999999994 6889
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+.+
T Consensus 141 ~v~~a~~~ 148 (150)
T 2i2y_A 141 RVELSNGE 148 (150)
T ss_dssp EEEECCCC
T ss_pred EEEEcCCC
Confidence 99999875
No 133
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.6e-17 Score=136.90 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=75.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.++++|||+|||+++|+++|+++|++||.|++|+|+.+++ |+++|||||+|.+.++|++|++.|||..|+ +..
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~----g~~kG~afV~F~~~~~A~~Ai~~lng~~l~---Gr~ 158 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRS----GRSLGTADVHFERRADALKAMKQYKGVPLD---GRP 158 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTT----SSCSCCEEEEESCHHHHHHHHHHSTTCBCS---SSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC----CCEeeEEEEEeCCHHHHHHHHHHhCCCEEC---CEE
Confidence 4578999999999999999999999999999999999873 667779999999999999999999999995 578
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||....
T Consensus 159 l~V~~a~~~~ 168 (177)
T 2f3j_A 159 MDIQLVASQI 168 (177)
T ss_dssp CEEEEESSGG
T ss_pred EEEEEecCCC
Confidence 9999997654
No 134
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=121.57 Aligned_cols=80 Identities=13% Similarity=0.147 Sum_probs=71.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEE-EeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR-LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vr-l~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.+++|||+|||+++|+++|+++|++||.|.+|+ |+.++.+ | .|||+|.+.++|++|++.|||..|+ +..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~---~----~afV~f~~~~~a~~Ai~~l~g~~~~---g~~ 83 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET---A----VVNVTYSSKDQARQALDKLNGFQLE---NFT 83 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS---E----EEEEEESSHHHHHHHHHHHTTCBCS---SCB
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC---C----EEEEEECCHHHHHHHHHHhCCCEEC---CcE
Confidence 478999999999999999999999999999995 7777632 3 5999999999999999999999995 678
Q ss_pred EEEEcCcchhh
Q 027473 210 LRSFFPNQFFA 220 (223)
Q Consensus 210 lrisfa~~~~~ 220 (223)
|+|+||+.+-+
T Consensus 84 l~V~~a~~~~~ 94 (96)
T 2e44_A 84 LKVAYIPDEMA 94 (96)
T ss_dssp CEEEECCCCCS
T ss_pred EEEEEcCcccc
Confidence 99999998743
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=1.8e-17 Score=125.16 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 130 DASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 130 ~~~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
..+++|||+|||++ +|+++|+++|++||.|.+|+| .+ | ||||+|.+.++|++|++.|||..|+ +.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~-----g----~afV~f~~~~~A~~A~~~l~g~~~~---g~ 90 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HK-----G----YAFVQYSNERHARAAVLGENGRVLA---GQ 90 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ET-----T----EEEEECSSSHHHHHHHHHHTTCEET---TE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eC-----C----EEEEEECCHHHHHHHHHHcCCCEEC---Ce
Confidence 34689999999999 999999999999999999998 11 4 9999999999999999999999995 67
Q ss_pred cEEEEcCcc
Q 027473 209 SLRSFFPNQ 217 (223)
Q Consensus 209 ~lrisfa~~ 217 (223)
.|+|+||+.
T Consensus 91 ~l~V~~a~~ 99 (110)
T 1wf1_A 91 TLDINMAGE 99 (110)
T ss_dssp ECCEEESCC
T ss_pred EEEEEECCC
Confidence 899999974
No 136
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=3.4e-17 Score=121.82 Aligned_cols=75 Identities=19% Similarity=0.335 Sum_probs=68.4
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 130 DASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 130 ~~~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
.++++|||+|||+ ++|+++|+++|++||.|.+|+|. + | ||||+|.+.++|++|++.|||..++ +.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~---g~ 85 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--N-----A----FGFIQFDNPQSVRDAIEXESQEMNF---GK 85 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--S-----S----EEEEEESSHHHHHHHHHHHTTSEET---TE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--C-----C----EEEEEECCHHHHHHHHHHcCCCEEC---CE
Confidence 3589999999998 99999999999999999999983 1 4 9999999999999999999999995 68
Q ss_pred cEEEEcCcch
Q 027473 209 SLRSFFPNQF 218 (223)
Q Consensus 209 ~lrisfa~~~ 218 (223)
.|+|+||+.+
T Consensus 86 ~l~V~~a~~~ 95 (97)
T 2xnq_A 86 KLILEVSSSN 95 (97)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEecCCC
Confidence 8999999864
No 137
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=3.2e-18 Score=120.20 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=67.0
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEE
Q 027473 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSF 213 (223)
Q Consensus 134 tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lris 213 (223)
+|||+|||.++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++. ++..++ +..|+|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g~~l~v~ 73 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKT---NKRRGFCFITFKEEEPVKKIMEK-KYHNVG---LSKCEIK 73 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCC---SSSCCCEEEECSSSHHHHHHHTT-SSCCBT---TBCCCEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CCcCCEEEEEECCHHHHHHHHHh-CCCeEC---CEEEEEE
Confidence 6999999999999999999999999999999988743 67778999999999999999985 888884 6778888
Q ss_pred cC
Q 027473 214 FP 215 (223)
Q Consensus 214 fa 215 (223)
+|
T Consensus 74 ~a 75 (75)
T 1iqt_A 74 VA 75 (75)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 138
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=2.3e-17 Score=130.61 Aligned_cols=81 Identities=23% Similarity=0.337 Sum_probs=74.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+++|||+|||.++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|+|..+. +..|+
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~ 76 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKT---GYSYGYAFVDFTSEMDSQRAIKVLNGITVR---NKRLK 76 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTT---TEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCC---CccceEEEEEECCHHHHHHHHHhcCCCEeC---CcEEE
Confidence 789999999999999999999999999999999998733 667789999999999999999999999994 67899
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|+|++.+
T Consensus 77 v~~~~~~ 83 (168)
T 1b7f_A 77 VSYARPG 83 (168)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998764
No 139
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-19 Score=134.58 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=75.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeE--------EEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCcee
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKE--------VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~--------vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
++++|||+|||.++|+++|+++|++||.|.+ |+|+.++.+ |+++|||||+|.+.++|++|++.|||..+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET---GKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3789999999999999999999999999998 899988643 66778999999999999999999999999
Q ss_pred cCCCCCcEEEEcCcchh
Q 027473 203 HQAFLGSLRSFFPNQFF 219 (223)
Q Consensus 203 ~~~~~~~lrisfa~~~~ 219 (223)
+ +..|+|+||+.+.
T Consensus 83 ~---g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 S---GNPIKVSFATRRA 96 (116)
Confidence 5 6789999998764
No 140
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=3e-18 Score=136.82 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
...++|||+|||+++||++|+++|++|| |++|+|+.++. |+++|||||+|.+.++|++|| .+|+..|+ +..
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~----g~srGfaFV~F~~~e~A~~Al-~~~g~~l~---gR~ 114 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD----GRVTGEADVEFATHEEAVAAM-SKDRANMQ---HRY 114 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS----SCSSCCCEEECSHHHHHHHHT-TCCSCSSS---SCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC----CCCceEEEEEeCCHHHHHHHH-hhCCCEEC---CEE
Confidence 3478999999999999999999999999 77999999874 677889999999999999999 78999885 567
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|..++++
T Consensus 115 i~V~~a~~~ 123 (139)
T 2hgn_A 115 IELFLNSTT 123 (139)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 888887765
No 141
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=126.91 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=68.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||+++|+++|+++|++||.|.+|+|+..+ | ||||+|.+.++|++|++.|||+.++ +..|+
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~ 77 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG-----I----TAIVEFLEPLEARKAFRHLAYSKFH---HVPLY 77 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS-----S----CEEEEESCHHHHHHHHHHHTTCBSS---SSBCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----C----EEEEEeCCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 6799999999999999999999999999999987543 4 9999999999999999999999995 67899
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|+||+..
T Consensus 78 V~~a~~~ 84 (111)
T 1whx_A 78 LEWAPIG 84 (111)
T ss_dssp EEEEETT
T ss_pred EEECCCC
Confidence 9999754
No 142
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=4.6e-17 Score=134.12 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=111.4
Q ss_pred CCccccccccccccccccCCCCCCCcccccchhhh-hccCC--CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 027473 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRY-LRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPG 108 (223)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~-~~~~~--~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~ 108 (223)
.+..+++.--+++-|.. |-.|.+.+++. |.- .++++ |+.|.+. ++..|+. .++|..+.++.+...-...
T Consensus 35 nLp~~~t~~~l~~~f~~-~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~-~l~~~~~~g~~l~v~~~~~-- 107 (216)
T 2qfj_A 35 SIYYELGEDTIRQAFAP-FGPIKSIDMSW---DSVTMKHKGFAFVEYEVPEAAQLALE-QMNSVMLGGRNIKVGRPSN-- 107 (216)
T ss_dssp CCCTTCCHHHHHHHHGG-GSCEEEEEECC---C-CC-CCCSEEEEEESSHHHHHHHHH-HHSSCCCC-CCCEEECCSC--
T ss_pred CCCCCCCHHHHHHHHHh-CCCEEEEEEee---cCCCCccCceEEEEeCCHHHHHHHHH-HccCCeeCCeeEEEecCCC--
Confidence 44555555444444432 33344444443 321 23444 6678775 4445665 6788777776554321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHH
Q 027473 109 PSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188 (223)
Q Consensus 109 ~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~ 188 (223)
........ ..........++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.+
T Consensus 108 ---~~~~~~~~---~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~---g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 108 ---IGQAQPII---DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTT---GKHKGYGFIEYEKAQ 178 (216)
T ss_dssp ---CGGGHHHH---HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTT---CCEEEEEEEEESSHH
T ss_pred ---ccccchhh---hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCC---CCcCceEEEEecCHH
Confidence 00000000 000000123689999999999999999999999999999999998743 778889999999999
Q ss_pred HHHHHHHHhcCceecCCCCCcEEEEcCcchhhh
Q 027473 189 HAATAMDALQVMLTHQAFLGSLRSFFPNQFFAA 221 (223)
Q Consensus 189 ~A~~Al~~LnG~~l~~~~~~~lrisfa~~~~~~ 221 (223)
+|.+|++.|||..|+ +..|+|+||..+...
T Consensus 179 ~A~~A~~~l~g~~~~---g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLG---GQYLRVGKAVTPPMP 208 (216)
T ss_dssp HHHHHHHHHTTCBCS---SSBCEEEECSSCSST
T ss_pred HHHHHHHHccCCEeC---CcEEEEEEecCCCCC
Confidence 999999999999994 688999999987543
No 143
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.71 E-value=4.6e-17 Score=129.60 Aligned_cols=117 Identities=16% Similarity=0.173 Sum_probs=93.2
Q ss_pred CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHH
Q 027473 73 ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (223)
Q Consensus 73 ~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~ 151 (223)
|+.|.+. ++..|+ .++|..+.++.+...-. ....++...++|||+|||.++|+++|++
T Consensus 55 fV~f~~~~~A~~A~--~~~~~~~~g~~i~v~~~-------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~ 113 (172)
T 2g4b_A 55 FLEFRSVDETTQAM--AFDGIIFQGQSLKIRRP-------------------HDYQPLPGAHKLFIGGLPNYLNDDQVKE 113 (172)
T ss_dssp EEEESSHHHHHHHG--GGTTCEETTEECEEECC-------------------SSCCCCTTTTCEEEECCCTTCCHHHHHH
T ss_pred EEEeCCHHHHHHHH--HhCCcEecCceeeecCC-------------------cccCCCCCCCEEEEEcCCCcCCHHHHHH
Confidence 6678775 444566 58888887765433211 0011122378999999999999999999
Q ss_pred hhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCc
Q 027473 152 IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPN 216 (223)
Q Consensus 152 lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~ 216 (223)
+|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..++ +..|+|+||+
T Consensus 114 ~f~~~G~v~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V~~As 172 (172)
T 2g4b_A 114 LLTSFGPLKAFNLVKDSAT---GLSKGYAFCEYVDINVTDQAIAGLNGMQLG---DKKLLVQRAS 172 (172)
T ss_dssp HHHTTSCEEEEEEEECTTT---CSEEEEEEEEESSTTHHHHHHHHHTTCEET---TEECEEEECC
T ss_pred HHHhcCCceEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHcCCCEEC---CeEEEEEeCC
Confidence 9999999999999998733 778899999999999999999999999994 6899999985
No 144
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=4.7e-17 Score=123.54 Aligned_cols=75 Identities=28% Similarity=0.458 Sum_probs=69.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
.+++|||+|||.++|+++|+++|++||.|.+|+|+ + | ||||+|.+.++|++|++.|||..+ .+..|
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--k-----g----~afV~f~~~~~A~~Ai~~l~g~~~---~g~~l 95 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--N-----G----FAFVEFEEAESAAKAIEEVHGKSF---ANQPL 95 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--T-----T----EEEEECSSHHHHHHHHHHHTTCEE---TTEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--C-----C----EEEEEECCHHHHHHHHHHcCCCEE---CCeEE
Confidence 47899999999999999999999999999999998 2 4 999999999999999999999999 46889
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|+||+.+.
T Consensus 96 ~V~~a~~~~ 104 (108)
T 2jvo_A 96 EVVYSKLPA 104 (108)
T ss_dssp EEESCSCCC
T ss_pred EEEEecCCC
Confidence 999998753
No 145
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=130.22 Aligned_cols=79 Identities=16% Similarity=0.306 Sum_probs=69.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE--------EEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEV--------RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVML 201 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v--------rl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~ 201 (223)
.++++|||+|||+++|+++|+++|++||.|.+| ++... |+++|||||+|.+.++|++|++.|||+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~------g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKE------GRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEE------TTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccC------CCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 347899999999999999999999999998764 33332 6778899999999999999999999999
Q ss_pred ecCCCCCcEEEEcCcc
Q 027473 202 THQAFLGSLRSFFPNQ 217 (223)
Q Consensus 202 l~~~~~~~lrisfa~~ 217 (223)
|+ +..|+|+||+.
T Consensus 117 ~~---g~~l~V~~a~~ 129 (143)
T 3egn_A 117 LF---GKPMVVQFARS 129 (143)
T ss_dssp ET---TEECEEEECCC
T ss_pred eC---CcEEEEEECCC
Confidence 94 68899999965
No 146
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.71 E-value=3.8e-17 Score=119.97 Aligned_cols=80 Identities=19% Similarity=0.086 Sum_probs=62.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+.++|||+|||+++||++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|+ .|+|..+.. .+..|
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--------srGfaFV~F~~~~~A~----~~~~~~~~~-~g~~v 76 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--------FRAFAFVTFADDKVAQ----SLCGEDLII-KGISV 76 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--------CCSEEEEEESCHHHHH----HHTTCEEEE-TTEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--------CCCEEEEEECCHHHHH----HHcCCCccc-CCEEE
Confidence 4789999999999999999999999999999999875 2339999999999987 367776643 36789
Q ss_pred EEEcCcchhhhcC
Q 027473 211 RSFFPNQFFAALN 223 (223)
Q Consensus 211 risfa~~~~~~~~ 223 (223)
+|++|.++-.-||
T Consensus 77 ~v~~a~~k~~~~n 89 (89)
T 3d2w_A 77 HISNAEPKHNKLN 89 (89)
T ss_dssp EEEECC-------
T ss_pred EEEEcCCCCcCCC
Confidence 9999998876665
No 147
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=117.46 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=67.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.++++|||+|| ++|+++|+++|++||.|.+|+|...+ | ||||+|.+.++|++||+.|||..|+ +..
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~-----g----~afV~f~~~~~a~~Ai~~l~g~~~~---g~~ 78 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR-----N----CAFVTYEKMESADQAVAELNGTQVE---SVQ 78 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTT-----T----EEEEEESSHHHHHHHHHHTTTEEET---TEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCC-----C----EEEEEECCHHHHHHHHHHhCCCeEC---CeE
Confidence 34789999996 89999999999999999999985322 3 9999999999999999999999994 689
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+.
T Consensus 79 l~v~~a~~~~ 88 (97)
T 1x5p_A 79 LKVNIARKQP 88 (97)
T ss_dssp EEEECCSSCC
T ss_pred EEEEECCCCC
Confidence 9999998764
No 148
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=3.1e-17 Score=134.70 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=71.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
+...+|||+||++++|+++|+++|++||.|++|+|..++ ++|||||+|.+.++|++|++.|||..|.+ .+..
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~-------~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g-~g~~ 115 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-------NQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCT 115 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS-------SCEEEEEEESCHHHHHHHHHHSTTBCSSS-SCSC
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-------CCCEEEEEECCHHHHHHHHHHhCCCEecC-CCcE
Confidence 335679999999999999999999999999999997653 23499999999999999999999999964 2478
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+.+
T Consensus 116 L~V~~Ak~~ 124 (164)
T 1sjr_A 116 LRIDFSKLT 124 (164)
T ss_dssp EEEEECSSS
T ss_pred EEEEEecCC
Confidence 999999876
No 149
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.70 E-value=3.6e-17 Score=136.77 Aligned_cols=156 Identities=12% Similarity=0.099 Sum_probs=107.9
Q ss_pred CCccccccccccccccccCCCCCCCcccccchhhh-hccCC--CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 027473 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRY-LRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPG 108 (223)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~-~~~~~--~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~ 108 (223)
.+..+++.--+++-|.. |-.|.+.+++. |+. .++++ |+.|.+. ++..|+. .+++..+.++.+...-..
T Consensus 22 nLp~~~te~~L~~~F~~-~G~I~~v~i~~---d~~tg~~~G~afV~F~~~~~A~~Ai~-~~~~~~~~g~~i~~~~~~--- 93 (213)
T 4f02_A 22 DLHPDVTEAMLYEKFSP-AGPILSIRVCR---DMITRRSLGYAYVNFQQPADAERALD-TMNFDVIKGKPVRIMWSQ--- 93 (213)
T ss_dssp SCCTTCCHHHHHHHHGG-GSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHH-HHTTCEETTEECEEEECC---
T ss_pred CCCCCCCHHHHHHHHHh-hCCEEEEEEec---ccCCCCccccccceeCCHHHHHHHHH-HhhhhhcCCccccccccc---
Confidence 45556665555554432 33455555553 433 24444 6677775 4445665 667766655433221000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHH
Q 027473 109 PSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188 (223)
Q Consensus 109 ~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~ 188 (223)
..........++|||+|||+++|+++|+++|++||.|++|+|+.++ +.++|||||+|.+.+
T Consensus 94 --------------~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-----~~~~g~~fV~f~~~~ 154 (213)
T 4f02_A 94 --------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-----NGSKGYGFVHFETQE 154 (213)
T ss_dssp --------------CCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-----TEEEEEEEEEESSHH
T ss_pred --------------ccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-----CCCceEEEEEeCCHH
Confidence 0000001135799999999999999999999999999999999986 346779999999999
Q ss_pred HHHHHHHHhcCceecCCCCCcEEEEcCcch
Q 027473 189 HAATAMDALQVMLTHQAFLGSLRSFFPNQF 218 (223)
Q Consensus 189 ~A~~Al~~LnG~~l~~~~~~~lrisfa~~~ 218 (223)
+|++||+.|||..|+ +..|+|+||+.+
T Consensus 155 ~a~~Ai~~lng~~~~---g~~i~V~~a~~~ 181 (213)
T 4f02_A 155 AAERAIEKMNGMLLN---DRKVFVGRFKSR 181 (213)
T ss_dssp HHHHHHHHHTTCEET---TEECEEEECCCH
T ss_pred HHHHHHHHhCCCEEC---CEEEEEEEcCCC
Confidence 999999999999994 679999999765
No 150
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.70 E-value=5.5e-17 Score=129.04 Aligned_cols=86 Identities=20% Similarity=0.328 Sum_probs=76.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++.+.. ++++|||||+|.+.++|++|++.|||..+.+.....++
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~-~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNP-PQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSS-CEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCC-CCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 68999999999999999999999999999999999985311 27888999999999999999999999988766678899
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
+.+++..
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 9888754
No 151
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=1.9e-17 Score=130.31 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=68.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCee--EEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~--~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~ 208 (223)
..++|||+|||+++||++|+++|++| .|+ +|+|+.++. |+++|||||+|.++++|++||+. ++..|+ +.
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~----GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~---gR 111 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE----GKITGEAFVQFASQELAEKALGK-HKERIG---HR 111 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS----SSSCSEEEEEESSTTHHHHHHTT-TTCCBT---TB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC----CCCceEEEEEECCHHHHHHHHHH-CCCEEC---CE
Confidence 47899999999999999999999999 677 899998874 67778999999999999999985 778884 56
Q ss_pred cEEEEcCcch
Q 027473 209 SLRSFFPNQF 218 (223)
Q Consensus 209 ~lrisfa~~~ 218 (223)
.|+|..++++
T Consensus 112 ~I~V~~a~~~ 121 (126)
T 2hgm_A 112 YIEVFKSSQE 121 (126)
T ss_dssp CCCCEEECHH
T ss_pred EEEEEECCHH
Confidence 7888887654
No 152
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=120.73 Aligned_cols=76 Identities=16% Similarity=0.214 Sum_probs=66.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCC-eeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC-ceecCCCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV-MLTHQAFLG 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~-i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG-~~l~~~~~~ 208 (223)
..++|||+|||.++|+++|+++|++||. |..+.+.. + | ||||+|.+.++|++|++.||| ..++ +.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~-~-----g----~afV~f~~~~~A~~A~~~l~g~~~~~---g~ 73 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK-S-----G----YAFVDYPDQNWAIRAIETLSGKVELH---GK 73 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE-T-----T----EEEECCSCHHHHHHHHHHHTTTCEET---TE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC-C-----C----EEEEEECCHHHHHHHHHHccCCeeEC---CE
Confidence 4789999999999999999999999999 66665532 1 4 999999999999999999999 9994 68
Q ss_pred cEEEEcCcchh
Q 027473 209 SLRSFFPNQFF 219 (223)
Q Consensus 209 ~lrisfa~~~~ 219 (223)
.|+|+||+.+.
T Consensus 74 ~l~v~~a~~~~ 84 (93)
T 2cqh_A 74 IMEVDYSVSKK 84 (93)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 89999998753
No 153
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=5.5e-17 Score=128.54 Aligned_cols=78 Identities=18% Similarity=0.148 Sum_probs=69.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceE-EEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLIL-CFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~-aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
--.|||+||++.+|+++|+++|++||.|.+|+|+.+. +|| |||+|.+.++|++|++.|||..|.+ ....|
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~--------~gfqAFVef~~~~~A~~Ai~~LnG~~i~g-~~~~L 98 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--------NQFQALLQYADPVSAQHAKLSLDGQNIYN-ACCTL 98 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET--------TEEEEEEEESCHHHHHHHHHHHTTCEEET-TEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC--------CCcEEEEEECCHHHHHHHHHHcCCCeecC-CCcEE
Confidence 4477899999999999999999999999999988653 237 9999999999999999999999975 24789
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
||+||+.+
T Consensus 99 rI~~ak~~ 106 (130)
T 3zzy_A 99 RIDFSKLT 106 (130)
T ss_dssp EEEECSCS
T ss_pred EEEecCCC
Confidence 99999875
No 154
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.8e-17 Score=120.69 Aligned_cols=74 Identities=19% Similarity=0.347 Sum_probs=67.4
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
++++|||+|||+ ++|+++|+++|++||.|.+|+|. + | ||||+|.+.++|++|++.|||..+. +..
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~-----g----~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 74 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--N-----A----FGFIQFDNPQSVRDAIECESQEMNF---GKK 74 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--T-----T----EEEEEESCHHHHHHHHHHHTCSSCB---TTT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--C-----C----EEEEEECCHHHHHHHHHHcCCCeeC---CcE
Confidence 488999999999 99999999999999999999984 1 4 9999999999999999999999995 678
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+.+
T Consensus 75 l~V~~a~~~ 83 (96)
T 2kvi_A 75 LILEVSSSN 83 (96)
T ss_dssp BCEEEEECC
T ss_pred EEEEEcCcC
Confidence 999998754
No 155
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=1.1e-17 Score=124.39 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=67.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
.+++|||+|||+++|+++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++ +|..++ +..|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~a~~Ai~--~~~~~~---g~~l 78 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRT----GVSKGYGFVSFYNDVDVQKIVE--SQINFH---GKKL 78 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT----SCEEEEEEEEESSCCCHHHHTT--CCCEET---TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCC----CCccceEEEEECCHHHHHHHHh--CCCeEC---CEEE
Confidence 368999999999999999999999999999999999973 7788899999999999999998 777773 4566
Q ss_pred EEEcCc
Q 027473 211 RSFFPN 216 (223)
Q Consensus 211 risfa~ 216 (223)
+|.+|.
T Consensus 79 ~v~~a~ 84 (102)
T 2xs2_A 79 KLGPAI 84 (102)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 666664
No 156
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.69 E-value=5.9e-17 Score=150.78 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=75.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
++.++|||+|||+++|+++|+++|++||.|+.|+|+.++.+ |+++|||||+|.+.++|++||+.|||..|+ +..
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~t---g~~kG~aFV~F~~~e~A~~Ai~~lng~~i~---gr~ 173 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRS---GKPRGYAFIEYEHERDMHSAYKHADGKKID---GRR 173 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCC---CCccceEEEeeccHHHHHHHHHHcCCCEEC---CEE
Confidence 34789999999999999999999999999999999998743 677889999999999999999999999994 688
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|.||..+
T Consensus 174 i~V~~a~~~ 182 (437)
T 3pgw_S 174 VLVDVERGR 182 (437)
T ss_pred EEEEEeCCC
Confidence 999999864
No 157
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.5e-17 Score=127.75 Aligned_cols=79 Identities=13% Similarity=0.172 Sum_probs=72.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRS 212 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lri 212 (223)
++|||+|||.++|+++|+++|++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..+. +..|+|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN----NKNVNYAFVEYHQSHDANIALQTLNGKQIE---NNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-----CCEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC----CCCCCEEEEEeCCHHHHHHHHHHcCCCccC---CCeeEE
Confidence 4899999999999999999999999999999999874 567789999999999999999999999994 678999
Q ss_pred EcCcch
Q 027473 213 FFPNQF 218 (223)
Q Consensus 213 sfa~~~ 218 (223)
+|+.++
T Consensus 74 ~~~~~~ 79 (166)
T 3md3_A 74 NWAFQS 79 (166)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998654
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=8.8e-17 Score=130.74 Aligned_cols=138 Identities=16% Similarity=0.130 Sum_probs=98.4
Q ss_pred CccCCCCCCC-CCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEEcCCCCCCCHHHH
Q 027473 73 ISSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRS--EVPLPPDASSTLFVEGLPSDCSRREV 149 (223)
Q Consensus 73 ~~~~~~~~~~-r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~p--~~~~p~~~~~tLfVgnLp~~~teeeL 149 (223)
|+.|.+.+.+ .|+ .++|..+.++.+...-........ ..........+ .....+...++|||+|||.++|+++|
T Consensus 55 fV~F~~~~~A~~Al--~l~g~~~~g~~i~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l 131 (198)
T 2yh0_A 55 FLEFRSVDETTQAM--AFDGIIFQGQSLKIRRPHDYQPLP-GMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQV 131 (198)
T ss_dssp EEEESCSHHHHHHG--GGTTEEETTEEEEEECCCCCCCCC-CSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHH
T ss_pred EEEeCCHHHHHHHH--HhcCCEEcCceEEEeCCCCCCCCC-CCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHH
Confidence 6788876444 566 588888887665432211100000 00000000000 11112245789999999999999999
Q ss_pred HHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCcchh
Q 027473 150 AHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPNQFF 219 (223)
Q Consensus 150 ~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~~~~ 219 (223)
+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++.|||..|+ +..|+|+||+.+-
T Consensus 132 ~~~f~~~G~v~~~~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 132 KELLTSFGPLKAFNLVKDSAT---GLSKGYAFCEYVDINVTDQAIAGLNGMQLG---DKKLLVQRASVGA 195 (198)
T ss_dssp HHHHHTBSCEEEEEEEECTTT---CSEEEEEEEEESSSSHHHHHHHHHTTCEET---TEECEEEESCCCC
T ss_pred HHHHHHcCCccEEEEeecCCC---CCcceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEEECCCCC
Confidence 999999999999999998733 678889999999999999999999999994 6889999998753
No 159
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.5e-18 Score=131.82 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=69.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCe----eEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGY----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i----~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
...+|||+|||+++|+++|+++|++||.| .+|+|+.+++ |+++|||||+|.+.++|++||+. |+..|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~----gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~--- 93 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPD----GRPTGDAFVLFACEEYAQNALRK-HKDLLG--- 93 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTT----SCEEEEEEECCSSHHHHHHHHTT-TTEESS---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCC----CCEeeEEEEEECCHHHHHHHHHh-CCCeeC---
Confidence 47899999999999999999999999975 6899998853 78889999999999999999986 998884
Q ss_pred CCcEEEEcCcch
Q 027473 207 LGSLRSFFPNQF 218 (223)
Q Consensus 207 ~~~lrisfa~~~ 218 (223)
+..|+|..|.++
T Consensus 94 gR~i~V~~a~~~ 105 (123)
T 2dha_A 94 KRYIELFRSTAA 105 (123)
T ss_dssp SCEECCEEECHH
T ss_pred CeEEEEEECCHH
Confidence 467888777653
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=2.5e-16 Score=124.60 Aligned_cols=119 Identities=16% Similarity=0.230 Sum_probs=91.7
Q ss_pred CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHH
Q 027473 73 ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (223)
Q Consensus 73 ~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~ 151 (223)
|+.|.+. ++..|+. .++|..+.++.+...-. . +.. .....++|||+|||.++|+++|++
T Consensus 49 fV~f~~~~~A~~a~~-~l~~~~~~g~~l~v~~~-~----------------~~~--~~~~~~~l~v~nl~~~~t~~~l~~ 108 (168)
T 1b7f_A 49 FVDFTSEMDSQRAIK-VLNGITVRNKRLKVSYA-R----------------PGG--ESIKDTNLYVTNLPRTITDDQLDT 108 (168)
T ss_dssp EEEESSHHHHHHHHH-HHTTCEETTEECEEEEC-C----------------CCS--STTTTCEEEEESCCTTCCHHHHHH
T ss_pred EEEECCHHHHHHHHH-hcCCCEeCCcEEEEEec-C----------------CCc--ccCCCCCEEEeCCCCCCCHHHHHH
Confidence 5677775 4445665 57777776654332110 0 000 112368999999999999999999
Q ss_pred hhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcC
Q 027473 152 IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFP 215 (223)
Q Consensus 152 lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa 215 (223)
+|++||.|..|+++.++.. |+++|||||+|.+.++|.+|++.|||..+++ ....|+|+||
T Consensus 109 ~f~~~G~i~~~~i~~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~~~l~V~~A 168 (168)
T 1b7f_A 109 IFGKYGSIVQKNILRDKLT---GRPRGVAFVRYNKREEAQEAISALNNVIPEG-GSQPLSVRLA 168 (168)
T ss_dssp HHTSSSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCCCTT-CSSCCEEEEC
T ss_pred hhhcCCcEEEEEEEEcCCC---CCcceEEEEEECCHHHHHHHHHHhcCCEecC-CCeEEEEEeC
Confidence 9999999999999998733 6788899999999999999999999999965 3488999997
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=8.8e-17 Score=130.53 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=72.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
...++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++||+. ++..++ +..
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~-~~~~~~---g~~ 83 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNT---KRSRGFGFVTYATVEEVDAAMNA-RPHKVD---GRV 83 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHT-CSCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCC---CCccceEEEEeCCHHHHHHHHhc-CCCEEC---CEE
Confidence 45889999999999999999999999999999999998743 67888999999999999999987 888884 678
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|.|+..+
T Consensus 84 l~v~~~~~~ 92 (196)
T 1l3k_A 84 VEPKRAVSR 92 (196)
T ss_dssp CEEEECCC-
T ss_pred eeeecccCc
Confidence 899988654
No 162
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=1.1e-16 Score=116.43 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=67.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+++|||+|||+++|+++|+++|++| .|.+|+|.. ++|||||+|.+.++|++|++.|||..++ +..|+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~---------~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~ 71 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDR---------NKRTAFVTLLNGEQAQNAIQMFHQYSFR---GKDLI 71 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEG---------GGTEEEECCSCHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeC---------CCcEEEEEECCHHHHHHHHHHhCCCeEC---CcEEE
Confidence 6799999999999999999999999 999999851 2339999999999999999999999994 68899
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|+||.+.
T Consensus 72 V~~a~~~ 78 (88)
T 1wg1_A 72 VQLQPTD 78 (88)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999875
No 163
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=2e-16 Score=124.60 Aligned_cols=119 Identities=15% Similarity=0.236 Sum_probs=90.3
Q ss_pred CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHH
Q 027473 73 ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (223)
Q Consensus 73 ~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~ 151 (223)
|+.|.+. ++..|+. .++|..+.++.+...-. . +.. .....++|||+|||.++|+++|++
T Consensus 48 fV~f~~~~~A~~a~~-~l~~~~~~g~~l~v~~~-~----------------~~~--~~~~~~~l~v~nl~~~~t~~~l~~ 107 (167)
T 1fxl_A 48 FVNYIDPKDAEKAIN-TLNGLRLQTKTIKVSYA-R----------------PSS--ASIRDANLYVSGLPKTMTQKELEQ 107 (167)
T ss_dssp EEEESSHHHHHHHHH-HHTTCEETTEECEEEEC-C----------------CCC--GGGTTCEEEEESCCTTCCHHHHHH
T ss_pred EEEECCHHHHHHHHH-HcCCCccCCceEEEEec-C----------------CCc--ccCCCCcEEECCCCCcCCHHHHHH
Confidence 5677775 4445665 57777666544322100 0 000 112367999999999999999999
Q ss_pred hhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcC
Q 027473 152 IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFP 215 (223)
Q Consensus 152 lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa 215 (223)
+|++||.|.+++++.++.+ |+++|||||+|.+.++|++|++.|||..+.+. ...|+|+||
T Consensus 108 ~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~~~i~v~~A 167 (167)
T 1fxl_A 108 LFSQYGRIITSRILVDQVT---GVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA-TEPITVKFA 167 (167)
T ss_dssp HHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred HHHhcCCEeEEEEEecCCC---CCccceEEEEeCCHHHHHHHHHHhcCCccCCC-ccceEEEeC
Confidence 9999999999999998733 67888999999999999999999999999653 246999997
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.4e-17 Score=122.43 Aligned_cols=70 Identities=27% Similarity=0.311 Sum_probs=61.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHh---cCcee
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL---QVMLT 202 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~L---nG~~l 202 (223)
+++|||+|||+++|+++|+++|++||.|. ++++.++.++..|+++|||||+|.+.++|++||+.| +|..+
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 68999999999999999999999999999 888887744333678889999999999999999998 66654
No 165
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=6.1e-17 Score=128.33 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=73.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||.++|+++|+++|++||.|.+|+++.++.+ |+++|||||+|.+.++|++|++ |+|..++ +..|+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~i~ 159 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDT---GQSRGFGFVTYDSADAVDRVCQ-NKFIDFK---DRKIE 159 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSS---STTSEEEEEEESSHHHHHHHHH-CSEECSS---SSCEE
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCC---CccceEEEEEECCHHHHHHHHh-CCCEEeC---CeEEE
Confidence 679999999999999999999999999999999998743 6788899999999999999998 8999884 68899
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|+||+++
T Consensus 160 V~~a~pk 166 (167)
T 2cjk_A 160 IKRAEPR 166 (167)
T ss_dssp EEECCCC
T ss_pred EeecCCC
Confidence 9999875
No 166
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=2.8e-16 Score=127.52 Aligned_cols=162 Identities=12% Similarity=0.103 Sum_probs=104.4
Q ss_pred CCccccccccccccccccCCCCCCCcccccchhhhhccCC--CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 027473 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (223)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~~~~~~--~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~ 109 (223)
.+..+++.--+++-|.. |-.|.+.+++.+..+ .++++ |+.|.+. ++..|+. .++..+.++.+...-....
T Consensus 20 nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~--g~~~g~afV~f~~~~~A~~A~~--~~~~~~~g~~l~v~~~~~~-- 92 (196)
T 1l3k_A 20 GLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNT--KRSRGFGFVTYATVEEVDAAMN--ARPHKVDGRVVEPKRAVSR-- 92 (196)
T ss_dssp SCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTT--CCEEEEEEEEESSHHHHHHHHH--TCSCEETTEECEEEECCC---
T ss_pred CCCCCCCHHHHHHHHHh-CCCEEEEEEEEcCCC--CCccceEEEEeCCHHHHHHHHh--cCCCEECCEEeeeecccCc--
Confidence 45555555555554432 334555555532221 23333 6778775 4445665 3666666554332111000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHH
Q 027473 110 SAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (223)
Q Consensus 110 ~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~ 189 (223)
.. ...+......++|||+|||.++|+++|+++|++||.|..|+|+.++.+ |+++|||||+|.+.++
T Consensus 93 ---~~--------~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~F~~~~~ 158 (196)
T 1l3k_A 93 ---ED--------SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS---GKKRGFAFVTFDDHDS 158 (196)
T ss_dssp ---------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTT---CCEEEEEEEEESSHHH
T ss_pred ---cc--------ccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCC---CCccceEEEEECCHHH
Confidence 00 000111123689999999999999999999999999999999998743 7788999999999999
Q ss_pred HHHHHHHhcCceecCCCCCcEEEEcCcchh
Q 027473 190 AATAMDALQVMLTHQAFLGSLRSFFPNQFF 219 (223)
Q Consensus 190 A~~Al~~LnG~~l~~~~~~~lrisfa~~~~ 219 (223)
|++|++. +|..|+ +..|+|+||..+-
T Consensus 159 A~~A~~~-~~~~~~---G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 159 VDKIVIQ-KYHTVN---GHNCEVRKALSKQ 184 (196)
T ss_dssp HHHHHHC-SCCEET---TEECEEEECC---
T ss_pred HHHHHHh-CCcEEC---CEEEEEEecCChh
Confidence 9999987 799994 6789999998763
No 167
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=115.78 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=65.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||+++|+++|+++|++||.|.+| +.++.+ |+ ||||+|.+.++|++|++ |||..|+ +..|+
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~---g~---~afV~f~~~~~a~~ai~-l~g~~~~---g~~l~ 75 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDK---GV---FAIVEMGDVGAREAVLS-QSQHSLG---GHRLR 75 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSS---CC---EEEEEESSHHHHHHHHT-CSCCEET---TEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCC---Cc---EEEEEECCHHHHHHHHh-cCCeEEC---CEEEE
Confidence 6799999999999999999999999999987 444422 33 99999999999999999 9999995 67899
Q ss_pred EEcCcch
Q 027473 212 SFFPNQF 218 (223)
Q Consensus 212 isfa~~~ 218 (223)
|++|.++
T Consensus 76 V~~a~~~ 82 (94)
T 2e5g_A 76 VRPREQK 82 (94)
T ss_dssp CBCSCCS
T ss_pred EEECCcC
Confidence 9998765
No 168
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.1e-17 Score=124.86 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=69.4
Q ss_pred CCCEEEE--cCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCcee-cCC-C
Q 027473 131 ASSTLFV--EGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLT-HQA-F 206 (223)
Q Consensus 131 ~~~tLfV--gnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l-~~~-~ 206 (223)
++++||| +||++++||++|+++|++||.|.+|.|+.++ | ||||+|.+.++|++|++.|||..+ ... .
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r-----g----faFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----P----YSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC-----S----CEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4789999 7799999999999999999999999887543 4 999999999999999999999988 321 2
Q ss_pred CCcEEEEcCcchh
Q 027473 207 LGSLRSFFPNQFF 219 (223)
Q Consensus 207 ~~~lrisfa~~~~ 219 (223)
+..|.|.||+..+
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 5689999997654
No 169
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.66 E-value=2.4e-16 Score=132.33 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=69.5
Q ss_pred CCEEEEcCCC-CCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 132 SSTLFVEGLP-SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 132 ~~tLfVgnLp-~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+++|||+||| +++|+++|+++|++||.|.+|+|+.++ + | ||||+|.+.++|++||+.|||..+. +..|
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~-g----~afV~f~~~~~A~~Ai~~lng~~~~---g~~l 72 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---P-G----AAMVEMADGYAVDRAITHLNNNFMF---GQKM 72 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---T-T----CEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---C-C----EEEEEECCHHHHHHHHHHhCCCEEC---CceE
Confidence 7899999999 899999999999999999999998763 1 4 9999999999999999999999995 5789
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|+||+++
T Consensus 73 ~v~~s~~~ 80 (205)
T 3tyt_A 73 NVCVSKQP 80 (205)
T ss_dssp EEEECSCS
T ss_pred EEEEccCC
Confidence 99999754
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=2.5e-16 Score=129.73 Aligned_cols=83 Identities=14% Similarity=0.222 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
..++|||+|||.++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++.|||..+. +..|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~l 100 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVT---MKHKGFAFVEYEVPEAAQLALEQMNSVMLG---GRNI 100 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC----CCCSEEEEEESSHHHHHHHHHHHSSCCCC----CCC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCC---CccCceEEEEeCCHHHHHHHHHHccCCeeC---CeeE
Confidence 3689999999999999999999999999999999988733 567779999999999999999999999994 6779
Q ss_pred EEEcCcchh
Q 027473 211 RSFFPNQFF 219 (223)
Q Consensus 211 risfa~~~~ 219 (223)
+|.++..+.
T Consensus 101 ~v~~~~~~~ 109 (216)
T 2qfj_A 101 KVGRPSNIG 109 (216)
T ss_dssp EEECCSCCG
T ss_pred EEecCCCcc
Confidence 999987653
No 171
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=1.2e-16 Score=122.20 Aligned_cols=78 Identities=17% Similarity=0.133 Sum_probs=65.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC--
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG-- 208 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~-- 208 (223)
..++|||+|||+++|+++|+++|++||.|.+|+|+.+ | ||||+|.+.++|++||+.|||+.|++....
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g----~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------G----TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------S----EEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------C----EEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 4789999999999999999999999999999999876 3 999999999999999999999999754322
Q ss_pred cEEEEcCcch
Q 027473 209 SLRSFFPNQF 218 (223)
Q Consensus 209 ~lrisfa~~~ 218 (223)
-|+|..+.++
T Consensus 85 ~i~v~~~~~~ 94 (115)
T 3beg_B 85 YIRVKVDGPR 94 (115)
T ss_dssp BCEEEECC--
T ss_pred EEEeccCCCC
Confidence 2777776654
No 172
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=6.5e-16 Score=133.16 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 131 ASSTLFVEGLPSDCSRREVA----HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~----~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
++++|||+|||+++|+++|+ ++|++||.|.+|+|+.+ |+++|||||+|.+.++|++|++.|||..|.
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 78 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS------LKMRGQAFVIFKEVSSATNALRSMQGFPFY--- 78 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC------CCcceEEEEEECCHHHHHHHHHHhcCCeeC---
Confidence 48899999999999999976 99999999999998863 567779999999999999999999999995
Q ss_pred CCcEEEEcCcchh
Q 027473 207 LGSLRSFFPNQFF 219 (223)
Q Consensus 207 ~~~lrisfa~~~~ 219 (223)
+..|+|+|++.+-
T Consensus 79 g~~l~v~~a~~~~ 91 (282)
T 3pgw_A 79 DKPMRIQYAKTDS 91 (282)
T ss_pred CcEEEEEEeccCc
Confidence 5889999997654
No 173
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=4.4e-16 Score=111.99 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=64.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~f----G-------~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG 199 (223)
+.++|||+|||+++|+++|+++|++| | .|.+|++..++ | ||||+|.+.++|++|+ .|||
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-----g----~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-----S----EEEEEESSHHHHHHHG-GGTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-----c----EEEEEcCCHHHHHHHH-hcCC
Confidence 37899999999999999999999999 8 89999998663 4 9999999999999999 9999
Q ss_pred ceecCCCCCcEEEEc
Q 027473 200 MLTHQAFLGSLRSFF 214 (223)
Q Consensus 200 ~~l~~~~~~~lrisf 214 (223)
..++ +..|+|+.
T Consensus 75 ~~~~---g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQ---GQSLKIRR 86 (87)
T ss_dssp CEET---TEECEEEC
T ss_pred CEEC---CeEEEEeC
Confidence 9995 56788875
No 174
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.63 E-value=8.1e-16 Score=128.23 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=71.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
.++|||+|||+++|+++|+++|++||.|.+|+|+.+.. |+++|||||+|.+.++|++|++.++ ..+ .+..|+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~----~~~kG~aFVeF~~~e~A~~A~~~~~-~~~---~Gr~l~ 180 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----KAFKGSIFVVFDSIESAKKFVETPG-QKY---KETDLL 180 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT----CCEEEEEEEEESSHHHHHHHHHCTT-CEE---TTEECE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC----CCcccEEEEEECCHHHHHHHHHhCC-CeE---CCEEEE
Confidence 58999999999999999999999999999999999864 6788899999999999999998765 477 467899
Q ss_pred EEcCcchhh
Q 027473 212 SFFPNQFFA 220 (223)
Q Consensus 212 isfa~~~~~ 220 (223)
|.|+++..+
T Consensus 181 V~~~~~y~~ 189 (193)
T 2voo_A 181 ILFKDDYFA 189 (193)
T ss_dssp EEETTTC--
T ss_pred EEEhHHHHH
Confidence 999987653
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=3.3e-16 Score=131.53 Aligned_cols=167 Identities=8% Similarity=0.025 Sum_probs=105.0
Q ss_pred ccccccccccccccCCCCCCCcccccchhhhhccCCCccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCC--
Q 027473 37 ELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKD-- 113 (223)
Q Consensus 37 ~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~-- 113 (223)
+++.--+++.|. .|-.|...+++. ++ +.-+|+.|.+. ++..|+. .|+|..+.++.+...-.......++.
T Consensus 16 ~~~~~~L~~~F~-~~G~v~~v~i~~---~~--~g~afV~f~~~~~A~~Ai~-~lng~~~~g~~l~v~~s~~~~~~p~~~~ 88 (205)
T 3tyt_A 16 KMNCDRVFNVFC-LYGNVEKVKFMK---SK--PGAAMVEMADGYAVDRAIT-HLNNNFMFGQKMNVCVSKQPAIMPGQSY 88 (205)
T ss_dssp TCCHHHHHHHHT-TTSCEEEEEECT---TS--TTCEEEEESSHHHHHHHHH-HHTTCEETTEECEEEECSCSCCCCCSCC
T ss_pred cCCHHHHHHHHH-hcCCeEEEEEec---CC--CCEEEEEECCHHHHHHHHH-HhCCCEECCceEEEEEccCCccCCCccc
Confidence 444444555443 355555555553 21 11136788775 5556776 78998888766543211000000000
Q ss_pred ----CC---CCCCCC---CC------CCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCe--eEEEEeecCCCCCCCC
Q 027473 114 ----RA---LGLGGG---RS------EVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGY--KEVRLVSKESRHPGGD 175 (223)
Q Consensus 114 ----~~---~g~~~~---~p------~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i--~~vrl~~~~~~~~gG~ 175 (223)
.. ..+... +- .......++++|||+|||+++|+++|+++|++||.| .+|+++.++ |+
T Consensus 89 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-----~~ 163 (205)
T 3tyt_A 89 GLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-----SE 163 (205)
T ss_dssp BCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-----SS
T ss_pred ccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-----CC
Confidence 00 000000 00 000011237899999999999999999999999999 899999886 34
Q ss_pred CceEEEEEecCHHHHHHHHHHhcCceecCCCCC-cEEEEcC
Q 027473 176 PLILCFVDFVSPAHAATAMDALQVMLTHQAFLG-SLRSFFP 215 (223)
Q Consensus 176 ~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~-~lrisfa 215 (223)
++|||||+|.+.++|.+||+.|||+.|.+.... ++.|+||
T Consensus 164 ~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 164 RSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 457999999999999999999999999876433 5665554
No 176
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=8.2e-16 Score=119.22 Aligned_cols=76 Identities=18% Similarity=0.209 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
.++++|||+|| ++|+++|+++|++||.|.+|+|...+ | ||||+|.+.++|++|++.|||..++ +..
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~k-----g----~aFV~f~~~~~A~~Ai~~lng~~~~---g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR-----N----CAFVTYEKMESADQAVAELNGTQVE---SVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCBCS---SCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCEEC---CeE
Confidence 35889999996 69999999999999999999996322 4 9999999999999999999999994 688
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||+.+.
T Consensus 103 l~V~~a~~~~ 112 (121)
T 2bz2_A 103 LKVNIARKQP 112 (121)
T ss_dssp CEEEECCSSC
T ss_pred EEEEEeCCCC
Confidence 9999998753
No 177
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.4e-16 Score=114.32 Aligned_cols=75 Identities=19% Similarity=0.079 Sum_probs=62.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|++ +++..+.. .+..|+
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--------~~g~afV~f~~~~~a~~----~~~~~~~~-~g~~l~ 71 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--------FRAFAFVTFADDQIAQS----LCGEDLII-KGISVH 71 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--------CCSCCEEECSCHHHHHH----TTTCEEEE-TTEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--------CCCEEEEEECCHHHHHH----HhcCCcee-CCEEEE
Confidence 789999999999999999999999999999999865 22399999999999975 45555432 357899
Q ss_pred EEcCcchh
Q 027473 212 SFFPNQFF 219 (223)
Q Consensus 212 isfa~~~~ 219 (223)
|+||+++-
T Consensus 72 v~~a~~~~ 79 (88)
T 1wf0_A 72 ISNAEPKH 79 (88)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99998763
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.63 E-value=8.2e-16 Score=123.08 Aligned_cols=116 Identities=14% Similarity=0.174 Sum_probs=87.6
Q ss_pred CccCCCCC-CCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHH
Q 027473 73 ISSYSGGQ-SARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (223)
Q Consensus 73 ~~~~~~~~-~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~ 151 (223)
|+.|.+.+ +..|+ .|+|..+.++.+...-... .........++|||+|||.++|+++|++
T Consensus 58 fV~f~~~~~a~~A~--~l~g~~~~g~~l~v~~~~~-----------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~ 118 (175)
T 1fje_B 58 YVDFESAEDLEKAL--ELTGLKVFGNEIKLEKPKG-----------------RDSKKVRAARTLLAKNLSFNITEDELKE 118 (175)
T ss_dssp EEEESSHHHHHHHH--HGGGEEETTEEEEEECCCC-----------------SSCSTTGGGGEEEEESCCSSCCHHHHHH
T ss_pred EEEECCHHHHHHHH--hcCCCEeCCeEEEEecCCC-----------------ccccccccCCEEEEeCCCCCCCHHHHHH
Confidence 66787764 44566 3888888776544321111 0011122478999999999999999999
Q ss_pred hhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCcch
Q 027473 152 IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPNQF 218 (223)
Q Consensus 152 lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~~~ 218 (223)
+|++||.|..+ ... |+++|||||+|.+.++|.+|++.|||..++ +..|+|+||++|
T Consensus 119 ~F~~~g~v~~~----~~~----~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~v~~a~~k 174 (175)
T 1fje_B 119 VFEDALEIRLV----SQD----GKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSLYYTGEK 174 (175)
T ss_dssp HCTTCSEEEEE----CSS----SSCCSEEEEECSSHHHHHHHHHHHTEEEET---TEEEEEEECSSC
T ss_pred HHHhcCeEEEe----cCC----CCCceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEEecCCC
Confidence 99999987655 222 566779999999999999999999999995 578999999876
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.61 E-value=7.6e-16 Score=121.95 Aligned_cols=78 Identities=13% Similarity=0.249 Sum_probs=66.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEE
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLR 211 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lr 211 (223)
+++|||+|||+++|+++|+++|++||.|.+|+|+.++.+ |+++|||||+|.+.++|++|++. +..++ +..|+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~--~~~~~---g~~i~ 74 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPAT---GRSRGFGFLSFEKPSSVDEVVKT--QHILD---GKVID 74 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTT---SSCCSCEEEEESSTHHHHHHHHS--CCEET---TEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCC---CCccceEEEEEccHHHHHHHHhc--ccccC---CeEcc
Confidence 689999999999999999999999999999999998743 67778999999999999999985 44553 45666
Q ss_pred EEcCcc
Q 027473 212 SFFPNQ 217 (223)
Q Consensus 212 isfa~~ 217 (223)
+.++..
T Consensus 75 v~~~~~ 80 (167)
T 2cjk_A 75 PKRAIP 80 (167)
T ss_dssp CEECCC
T ss_pred cccccc
Confidence 777654
No 180
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.61 E-value=1.5e-15 Score=128.27 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
++++|||+|||+ ++|+++|+++|++||.|.+|+|+.++ + | ||||+|.+.++|++|++.|||..+. +..
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~-g----~afV~F~~~~~A~~Ai~~l~g~~~~---g~~ 101 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---K-E----NALVQMADGNQAQLAMSHLNGHKLH---GKP 101 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---S-C----CEEEEESCHHHHHHHHHHHTTCBCS---SSB
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---C-C----EEEEEECCHHHHHHHHHHhCCCeEC---CeE
Confidence 488999999999 99999999999999999999999885 1 3 9999999999999999999999994 588
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|.|++.+
T Consensus 102 l~v~~a~~~ 110 (229)
T 2adc_A 102 IRITLSKHQ 110 (229)
T ss_dssp CEEECCSCC
T ss_pred EEEEEecCc
Confidence 999999854
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=2.6e-15 Score=129.37 Aligned_cols=77 Identities=31% Similarity=0.529 Sum_probs=70.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
++++|||+|||.++|+++|+++|++||.|++|+|+.++. | ||||+|.+.++|++|++.|||..++. +..|
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~----g----~afV~f~~~~~A~~A~~~l~g~~~~~--g~~l 275 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH----D----IAFVEFDNEVQAGAARDALQGFKITQ--NNAM 275 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC----c----EEEEEeCCHHHHHHHHHHcCCcEeCC--CCEE
Confidence 478999999999999999999999999999999997651 3 99999999999999999999999962 6899
Q ss_pred EEEcCcc
Q 027473 211 RSFFPNQ 217 (223)
Q Consensus 211 risfa~~ 217 (223)
+|+||++
T Consensus 276 ~v~~akk 282 (282)
T 3pgw_A 276 KISFAKK 282 (282)
T ss_pred EEEEecC
Confidence 9999974
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=5.3e-15 Score=112.32 Aligned_cols=82 Identities=11% Similarity=0.092 Sum_probs=70.8
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC
Q 027473 131 ASSTLFVEGLPS-----DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA 205 (223)
Q Consensus 131 ~~~tLfVgnLp~-----~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (223)
++++|+|.||.. +-++++|+++|++||.|.+|+|+.++.. .++++||+||+|.+.++|++|++.|||..++
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~--~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~-- 82 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGA--PDDEAVRIFLEFERVESAIKAVVDLNGRYFG-- 82 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSC--CTTTSEEEEEEESSHHHHHHHHHHHTTCEET--
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCC--CCCCcEEEEEEECCHHHHHHHHHHHCCCEEC--
Confidence 488999999973 3489999999999999999999988632 1467789999999999999999999999994
Q ss_pred CCCcEEEEcCcc
Q 027473 206 FLGSLRSFFPNQ 217 (223)
Q Consensus 206 ~~~~lrisfa~~ 217 (223)
+..|+++|++.
T Consensus 83 -Gr~i~v~~a~~ 93 (105)
T 2pe8_A 83 -GRVVKACFYNL 93 (105)
T ss_dssp -TEECEEEECCH
T ss_pred -CcEEEEEEcCH
Confidence 68999999975
No 183
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=2.7e-15 Score=129.40 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=93.7
Q ss_pred CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCC-CHHHHH
Q 027473 73 ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDC-SRREVA 150 (223)
Q Consensus 73 ~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~-teeeL~ 150 (223)
|+.|.+. ++..|+. .++|..+.++.+...-. . + + .........++|||+|||.++ |+++|+
T Consensus 141 fV~f~~~~~a~~A~~-~l~~~~~~g~~i~v~~a-~----~--~---------~~~~~~~~~~~l~v~nlp~~~~~~~~l~ 203 (284)
T 3smz_A 141 FAEYMKKDSAARAKS-DLLGKPLGPRTLYVHWT-D----A--G---------QLTPALLHSRCLCVDRLPPGFNDVDALC 203 (284)
T ss_dssp EEEESSHHHHHHHHH-HHTTCEETTEECEEEEC-C----G--G---------GCCTTTTSCSEEEEECCCTTCCCHHHHH
T ss_pred EEEECCHHHHHHHHH-HhCCCEeCCcEEEEEEC-C----C--C---------CCCcccCCccEEEEecCCcccCCHHHHH
Confidence 6677765 4446775 67887777655433111 1 0 0 000111237899999999995 999999
Q ss_pred HhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCcch
Q 027473 151 HIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPNQF 218 (223)
Q Consensus 151 ~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~~~ 218 (223)
++|++||.|.+|+|+.++. |+++|+|||+|.+.++|.+|++.|||..++ +..|+|+||+.+
T Consensus 204 ~~f~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~a~~~ 264 (284)
T 3smz_A 204 RALSAVHSPTFCQLACGQD----GQLKGFAVLEYETAEMAEEAQQQADGLSLG---GSHLRVSFCAPG 264 (284)
T ss_dssp HHTCSSSCCSEEEEEECSS----CCEEEEEEEECSSHHHHHHHHHHHTTCEET---TEECEEEECCSS
T ss_pred HHhhCCCCeEEEEEEECCC----CCcccEEEEEeCCHHHHHHHHHHhCCCccC---CeEEEEEEecCC
Confidence 9999999999999999874 678889999999999999999999999994 679999999875
No 184
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.5e-15 Score=120.56 Aligned_cols=79 Identities=9% Similarity=0.121 Sum_probs=69.3
Q ss_pred CEEEEcCC----CCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecC----HHH----HHHHHH--Hhc
Q 027473 133 STLFVEGL----PSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS----PAH----AATAMD--ALQ 198 (223)
Q Consensus 133 ~tLfVgnL----p~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~----~~~----A~~Al~--~Ln 198 (223)
++|||+|| |+.++|++|+++|++||+|.+|+++.|+.+ |.|+|||||+|.+ +++ |.+|++ .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~T---g~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNS---ALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTT---CCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC---CceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 58999999 999999999999999999999999999965 8999999999996 433 788888 899
Q ss_pred CceecCCCCCcEEEEcCcc
Q 027473 199 VMLTHQAFLGSLRSFFPNQ 217 (223)
Q Consensus 199 G~~l~~~~~~~lrisfa~~ 217 (223)
|..|+ +..|||++-++
T Consensus 80 g~~I~---Gr~irV~ln~~ 95 (136)
T 2j8a_A 80 GCFIM---GFKFEVILNKH 95 (136)
T ss_dssp CEEET---TEEEEEEECCT
T ss_pred CCeec---CcEEEEEECcc
Confidence 99994 68899987553
No 185
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-15 Score=112.48 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=63.2
Q ss_pred CCE-EEEcCCCCCCCHHH----HHHhhcCC-CCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCC
Q 027473 132 SST-LFVEGLPSDCSRRE----VAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQA 205 (223)
Q Consensus 132 ~~t-LfVgnLp~~~teee----L~~lF~~f-G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~ 205 (223)
+.| |||+|||+.+++++ |+++|++| |.|.+|. | |+|||+|.+.++|++|++.|||..+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----------g---G~AfV~F~~~esA~~A~~~l~G~~l--- 71 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----------G---CSAILRFINQDSAERAQKRMENEDV--- 71 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----------T---TCEEEEESSHHHHHHHHHHHTTCCS---
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----------c---CEEEEEECCHHHHHHHHHHhcCCcc---
Confidence 556 99999999999998 55899999 5999881 1 3999999999999999999999999
Q ss_pred CCCcEEEEcCcchh
Q 027473 206 FLGSLRSFFPNQFF 219 (223)
Q Consensus 206 ~~~~lrisfa~~~~ 219 (223)
.+..|+|+||+.+-
T Consensus 72 ~gr~i~v~~A~~~s 85 (96)
T 2diu_A 72 FGNRIIVSFTPKNR 85 (96)
T ss_dssp SSSCCEEESSCCSC
T ss_pred CCceEEEEecCCCc
Confidence 47899999998753
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=3.1e-15 Score=129.57 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCC---------CHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 027473 131 ASSTLFVEGLPSDC---------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVML 201 (223)
Q Consensus 131 ~~~tLfVgnLp~~~---------teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~ 201 (223)
.++||||+||+.++ +|++|+++|++||.|.+|+|+..+ | ||||+|.+.++|+.|+++|+|..
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-----G----~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-----N----CGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-----T----EEEEEESSHHHHHHHHHHHTTCC
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-----C----EEEEEeCCHHHHHHHHHHhCCCE
Confidence 47899999999998 799999999999999999999764 4 99999999999999999999999
Q ss_pred ec---C------CCCCcEEEEcCcchh
Q 027473 202 TH---Q------AFLGSLRSFFPNQFF 219 (223)
Q Consensus 202 l~---~------~~~~~lrisfa~~~~ 219 (223)
|. + ..+..|+|+||+...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 82 1 135789999998754
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=2.1e-15 Score=130.52 Aligned_cols=83 Identities=10% Similarity=0.137 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
..++|||+|||.+ +|+++|+++|++||.|..|+|+.+... .|+++|||||+|.+.++|.+|+ .|||..|+ +..
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~---g~~ 282 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE--HSFNNCCAFMVFENKDSAERAL-QMNRSLLG---NRE 282 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----CCCEEEEEEESSHHHHHHHG-GGTTEEET---TEE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc--CCCCceEEEEEeCCHHHHHHHH-HhcCCEEC---CcE
Confidence 4789999999999 999999999999999999999987641 1567789999999999999999 99999994 689
Q ss_pred EEEEcCcchh
Q 027473 210 LRSFFPNQFF 219 (223)
Q Consensus 210 lrisfa~~~~ 219 (223)
|+|+||++|.
T Consensus 283 i~V~~a~~k~ 292 (292)
T 2ghp_A 283 ISVSLADKKP 292 (292)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999999873
No 188
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.3e-14 Score=110.35 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=66.0
Q ss_pred CCCEEEEcCCCCCC-----------CHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC
Q 027473 131 ASSTLFVEGLPSDC-----------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (223)
Q Consensus 131 ~~~tLfVgnLp~~~-----------teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG 199 (223)
++++|+|.||.... ++++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|++.|||
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~------~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR------HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT------CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC------CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 48899999994433 26899999999999999966 443 1345999999999999999999999
Q ss_pred ceecCCCCCcEEEEcCcch
Q 027473 200 MLTHQAFLGSLRSFFPNQF 218 (223)
Q Consensus 200 ~~l~~~~~~~lrisfa~~~ 218 (223)
..++ +..|+|+||+++
T Consensus 87 ~~~~---gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWFG---GRQITAQAWDGT 102 (112)
T ss_dssp CEET---TEECEEEECCSC
T ss_pred CEEC---CcEEEEEEeCCC
Confidence 9994 688999999764
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=8.3e-15 Score=126.09 Aligned_cols=147 Identities=11% Similarity=0.034 Sum_probs=106.1
Q ss_pred CCccccccccccccccccCCCCCCCcccccchhhhhccCC--CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 027473 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (223)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~~~~~~--~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~ 109 (223)
.+..+++.--+++-|. .|-.|...+++ ++++ |+.|.+. ++..|+. .++|..+.++.+...
T Consensus 29 nLp~~~te~~l~~~F~-~~G~i~~v~i~--------~~kg~afV~f~~~~~A~~A~~-~l~g~~i~g~~l~v~------- 91 (261)
T 3sde_A 29 NLPTDITEEDFKRLFE-RYGEPSEVFIN--------RDRGFGFIRLESRTLAEIAKA-ELDGTILKSRPLRIR------- 91 (261)
T ss_dssp SCCTTCCHHHHHHHTG-GGCCCSEEEEE--------TTTTEEEEECSSHHHHHHHHH-HHTTCEETTEECEEE-------
T ss_pred CCCCCCCHHHHHHHHH-hcCCEEEEEEe--------CCCcEEEEEECCHHHHHHHHH-HcCCcEECCceeEee-------
Confidence 4555666555555443 23344444433 2333 6678775 4445665 677777665443221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHH
Q 027473 110 SAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (223)
Q Consensus 110 ~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~ 189 (223)
+. .++++|||+|||.++|+++|+++|++||.|.+|+|+.+++ |+++|||||+|.+.++
T Consensus 92 --------~a----------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~ 149 (261)
T 3sde_A 92 --------FA----------THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDR----GRATGKGFVEFAAKPP 149 (261)
T ss_dssp --------EC----------CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT----SCEEEEEEEEESSHHH
T ss_pred --------ec----------ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCC----CCcCcEEEEEeCCHHH
Confidence 00 1267999999999999999999999999999999999963 7788899999999999
Q ss_pred HHHHHHHh-cCceecCCCCCcEEEEcCcch
Q 027473 190 AATAMDAL-QVMLTHQAFLGSLRSFFPNQF 218 (223)
Q Consensus 190 A~~Al~~L-nG~~l~~~~~~~lrisfa~~~ 218 (223)
|.+|++.| +|..+....+..|+|+|+++.
T Consensus 150 A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 150 ARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999999 566666666789999999764
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.57 E-value=1e-14 Score=125.76 Aligned_cols=115 Identities=18% Similarity=0.249 Sum_probs=92.2
Q ss_pred CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHH
Q 027473 73 ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (223)
Q Consensus 73 ~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~ 151 (223)
|+.|.+. ++..|+. .++|..+.++.+... + .+ ..++|||+|||+++|+++|++
T Consensus 61 fV~f~~~~~A~~A~~-~l~~~~~~g~~i~v~---------------~--------~~--~~~~l~v~nlp~~~t~~~l~~ 114 (284)
T 3smz_A 61 FVTLLNGEQAEAAIN-AFHQSRLRERELSVQ---------------L--------QP--TDALLCVANLPPSLTQQQFEE 114 (284)
T ss_dssp EEEESSHHHHHHHHH-HHTTCEETTEECEEE---------------E--------CC--CSCEEEEESCCTTCCHHHHHH
T ss_pred EEEeCCHHHHHHHHH-HcCCCeeCCeEEEEE---------------e--------cC--CCCEEEEcCCCCcCCHHHHHH
Confidence 6677775 4445665 577776665433221 0 01 257999999999999999999
Q ss_pred hhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCcchh
Q 027473 152 IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPNQFF 219 (223)
Q Consensus 152 lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~~~~ 219 (223)
+|++||.|.+|+++.++.+ |+++|||||+|.+.++|.+|++.|+|..++ +..|+|+|++.+-
T Consensus 115 ~f~~~G~i~~~~i~~~~~~---g~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~i~v~~a~~~~ 176 (284)
T 3smz_A 115 LVRPFGSLERCFLVYSERT---GQSKGYGFAEYMKKDSAARAKSDLLGKPLG---PRTLYVHWTDAGQ 176 (284)
T ss_dssp HHGGGSCEEEEEEEECTTT---CCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEECCGGG
T ss_pred HHHhcCCeeEEEEEeeCCC---CccceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEEEECCCCC
Confidence 9999999999999988743 788899999999999999999999999994 6789999998653
No 191
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=1.4e-15 Score=121.63 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
...++|||+|||.++|+++|+++|++||.+..+.+..... |+++|||||+|.+.++|++|+ .|||..+. +..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~----~~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~ 82 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT----GTNRKFGYVDFESAEDLEKAL-ELTGLKVF---GNE 82 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEE----ETTTTEEEEEESSHHHHHHHH-HGGGEEET---TEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCC----CccccEEEEEECCHHHHHHHH-hcCCCEeC---CeE
Confidence 4588999999999999999999999999876632222222 556679999999999999999 49999995 688
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+|++.+
T Consensus 83 l~v~~~~~~ 91 (175)
T 1fje_B 83 IKLEKPKGR 91 (175)
T ss_dssp EEEECCCCS
T ss_pred EEEecCCCc
Confidence 999999753
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=1.8e-14 Score=121.62 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
++++|||+|||.++|+++|+++|++|| .|.+|+++.+. + | ||||+|.+.++|++|++.|||..+. .+..
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~-g----~afV~f~~~~~A~~Ai~~l~g~~~~--~g~~ 219 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---R-K----MALIQMGSVEEAVQALIDLHNHDLG--ENHH 219 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---T-T----CEEEEESSHHHHHHHHHHHTTCBSS--SSCB
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---C-c----EEEEEECCHHHHHHHHHHHCCCccC--CCCe
Confidence 378999999999999999999999999 99999997642 1 4 9999999999999999999999994 2689
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+++
T Consensus 220 l~v~~a~~~ 228 (229)
T 2adc_A 220 LRVSFSKST 228 (229)
T ss_dssp CEEEECSSC
T ss_pred EEEEEecCC
Confidence 999999875
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=7e-15 Score=120.24 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=69.7
Q ss_pred CCEEEEcCCCC-CCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 132 SSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 132 ~~tLfVgnLp~-~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
+++|||+|||+ ++|+++|+++|++||.|.+|+|+.++ + | ||||+|.+.++|++|++.|||..+. +..|
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~-g----~afV~f~~~~~a~~A~~~l~~~~~~---g~~l 71 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---K-E----NALVQMADGNQAQLAMSHLNGHKLH---GKPI 71 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---S-S----CCEEECTTTHHHHHHHHHHTTCCCS---SCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---C-C----EEEEEECCHHHHHHHHHHhCCCeec---CeEE
Confidence 67999999999 99999999999999999999999875 1 3 9999999999999999999999994 5789
Q ss_pred EEEcCcch
Q 027473 211 RSFFPNQF 218 (223)
Q Consensus 211 risfa~~~ 218 (223)
+|.|++.+
T Consensus 72 ~v~~a~~~ 79 (198)
T 1qm9_A 72 RITLSKHQ 79 (198)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999754
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=2e-14 Score=123.64 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=68.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL 210 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l 210 (223)
.+++|||+|||+++|+++|+++|++||.|.+|+|..++ | ||||+|.+.++|+.|++.|||..|. +..|
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k-----g----~afV~f~~~~~A~~A~~~l~g~~i~---g~~l 88 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR-----G----FGFIRLESRTLAEIAKAELDGTILK---SRPL 88 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT-----T----EEEEECSSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-----c----EEEEEECCHHHHHHHHHHcCCcEEC---Ccee
Confidence 47899999999999999999999999999999997553 4 9999999999999999999999994 6789
Q ss_pred EEEcCcc
Q 027473 211 RSFFPNQ 217 (223)
Q Consensus 211 risfa~~ 217 (223)
+|.|++.
T Consensus 89 ~v~~a~~ 95 (261)
T 3sde_A 89 RIRFATH 95 (261)
T ss_dssp EEEECCC
T ss_pred Eeeeccc
Confidence 9999875
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=9.3e-15 Score=119.51 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCC-CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCc
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGS 209 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~ 209 (223)
++++|||+|||.++|+++|+++|++|| .|.+|+|+.+. + | +|||+|.+.++|.+|++.|||..+. .+..
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~-g----~afV~f~~~~~A~~A~~~l~g~~~~--~g~~ 188 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---R-K----MALIQMGSVEEAVQALIDLHNHDLG--ENHH 188 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---S-S----CEEEECSSHHHHHHHHHHHTSSCCS--SCCS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---C-c----EEEEEeCCHHHHHHHHHHhcCCccC--CCCe
Confidence 478999999999999999999999999 99999997653 1 3 9999999999999999999999994 2678
Q ss_pred EEEEcCcch
Q 027473 210 LRSFFPNQF 218 (223)
Q Consensus 210 lrisfa~~~ 218 (223)
|+|+||+++
T Consensus 189 l~v~~a~~~ 197 (198)
T 1qm9_A 189 LRVSFSKST 197 (198)
T ss_dssp CCEEEECCC
T ss_pred EEEEeeccc
Confidence 999999875
No 196
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.53 E-value=2e-14 Score=130.35 Aligned_cols=79 Identities=14% Similarity=0.131 Sum_probs=67.7
Q ss_pred CCCCEEEEcC--CCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCC
Q 027473 130 DASSTLFVEG--LPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFL 207 (223)
Q Consensus 130 ~~~~tLfVgn--Lp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~ 207 (223)
.++++|||+| |++++||++|+++|++||.|++|+++.+| | ||||+|.+.++|++|++.|||..+.+..+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~k-----g----faFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK-----P----YSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTC-----S----EEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-----C----EEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3488999999 58999999999999999999999886532 3 99999999999999999999999854434
Q ss_pred C--cEEEEcCcc
Q 027473 208 G--SLRSFFPNQ 217 (223)
Q Consensus 208 ~--~lrisfa~~ 217 (223)
+ .|.|+|++.
T Consensus 87 ~~~~ly~~~~~~ 98 (345)
T 3tht_A 87 QKITLYLNFVEK 98 (345)
T ss_dssp CEEECEEEECSS
T ss_pred CceEEEEEEeec
Confidence 4 688899853
No 197
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=3e-14 Score=108.04 Aligned_cols=82 Identities=13% Similarity=0.064 Sum_probs=69.5
Q ss_pred CCEEEEcCC--CCCC--------CHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCce
Q 027473 132 SSTLFVEGL--PSDC--------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVML 201 (223)
Q Consensus 132 ~~tLfVgnL--p~~~--------teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~ 201 (223)
++.|.+.|+ |.+. .+++|+++|++||.|.+|+|+.++.++. ++++|++||+|.+.++|++|++.|||..
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~-~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVE-VPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBC-CTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCC-cCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 789999998 3343 3478999999999999999998874322 3567799999999999999999999999
Q ss_pred ecCCCCCcEEEEcCcc
Q 027473 202 THQAFLGSLRSFFPNQ 217 (223)
Q Consensus 202 l~~~~~~~lrisfa~~ 217 (223)
+ .+..|+++|++.
T Consensus 84 f---~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 F---ANRVVVTKYCDP 96 (105)
T ss_dssp E---TTEECEEEEECH
T ss_pred e---CCCEEEEEEeCH
Confidence 9 468999999865
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.51 E-value=2.5e-14 Score=123.81 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=85.3
Q ss_pred CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHH
Q 027473 73 ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAH 151 (223)
Q Consensus 73 ~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teeeL~~ 151 (223)
|+.|.+. ++..|+ .++|..+.++.+... ....++|||+|||.++|+++|++
T Consensus 85 fV~f~~~~~A~~A~--~~~~~~~~g~~i~v~--------------------------~~~~~~l~v~nlp~~~t~~~l~~ 136 (292)
T 2ghp_A 85 RIEFARYDGALAAI--TKTHKVVGQNEIIVS--------------------------HLTECTLWMTNFPPSYTQRNIRD 136 (292)
T ss_dssp EEEESSHHHHHHHH--TTTTCEETTEECEEE--------------------------ECCSCEEEEECCCTTCCHHHHHH
T ss_pred EEEECCHHHHHHHH--HhCCcEeCCcEEEEE--------------------------ECCCCEEEEECCCCCCCHHHHHH
Confidence 6678775 444566 378877766443321 01267999999999999999999
Q ss_pred hhcCCC-CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCcch
Q 027473 152 IFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPNQF 218 (223)
Q Consensus 152 lF~~fG-~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~~~ 218 (223)
+|++|| .|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..+. +..|+|.|++.+
T Consensus 137 ~f~~~G~~i~~v~i~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~a~~~ 197 (292)
T 2ghp_A 137 LLQDINVVALSIRLPSLRF----NTSRRFAYIDVTSKEDARYCVEKLNGLKIE---GYTLVTKVSNPL 197 (292)
T ss_dssp HHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEET---TEECEEEECCCC
T ss_pred HHHHhCCCeEEEEEEeCCC----CCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEEEECCCC
Confidence 999999 999999998874 456669999999999999999999999994 588999998754
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=7.3e-14 Score=110.95 Aligned_cols=74 Identities=19% Similarity=0.328 Sum_probs=65.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVM 200 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~f----G-------~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 200 (223)
+++|||+|||.++|+++|+++|++| | .|.++++..++ | ||||+|.++++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~-----g----~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-----N----FAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT-----T----EEEEEESSHHHHHHHG-GGTTC
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC-----C----EEEEEeCCHHHHHHHH-HhCCc
Confidence 6899999999999999999999999 6 77777775443 3 9999999999999999 89999
Q ss_pred eecCCCCCcEEEEcCcch
Q 027473 201 LTHQAFLGSLRSFFPNQF 218 (223)
Q Consensus 201 ~l~~~~~~~lrisfa~~~ 218 (223)
.++ +..|+|++++..
T Consensus 74 ~~~---g~~i~v~~~~~~ 88 (172)
T 2g4b_A 74 IFQ---GQSLKIRRPHDY 88 (172)
T ss_dssp EET---TEECEEECCSSC
T ss_pred Eec---CceeeecCCccc
Confidence 994 678999998754
No 200
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=1.1e-13 Score=112.40 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=64.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC----C-------CeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPF----V-------GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVM 200 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~f----G-------~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~ 200 (223)
+++|||+|||+++|+++|+++|++| | .|.++++... +|||||+|.+.++|++|+ .|||.
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~---------~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---------KNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT---------TTEEEEEESCSHHHHHHG-GGTTE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC---------CCEEEEEeCCHHHHHHHH-HhcCC
Confidence 6899999999999999999999999 5 6666666433 349999999999999999 89999
Q ss_pred eecCCCCCcEEEEcCcch
Q 027473 201 LTHQAFLGSLRSFFPNQF 218 (223)
Q Consensus 201 ~l~~~~~~~lrisfa~~~ 218 (223)
.++ +..|+|+|++.+
T Consensus 74 ~~~---g~~i~v~~~~~~ 88 (198)
T 2yh0_A 74 IFQ---GQSLKIRRPHDY 88 (198)
T ss_dssp EET---TEEEEEECCCCC
T ss_pred EEc---CceEEEeCCCCC
Confidence 994 678999998764
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=2.3e-14 Score=108.48 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=63.5
Q ss_pred EEcCCCCCCCHHHHHHhh------------cCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 136 FVEGLPSDCSRREVAHIF------------RPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 136 fVgnLp~~~teeeL~~lF------------~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
.+.|||+++++++|++.| ++||.|.+|+|+.++. |+++|||||+|.+.++|++|++.|||..++
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~----~~~~G~~fV~f~~~~~A~~A~~~lng~~~~ 94 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG----DHLVGNVYVKFRREEDAEKAVIDLNNRWFN 94 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS----SSSEEEEEEEESCHHHHHHHHHHHTTCEET
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC----CCccEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 467888999998888777 9999999999998764 577889999999999999999999999994
Q ss_pred CCCCCcEEEEcC
Q 027473 204 QAFLGSLRSFFP 215 (223)
Q Consensus 204 ~~~~~~lrisfa 215 (223)
+..|+|+|+
T Consensus 95 ---Gr~i~v~~s 103 (104)
T 1jmt_A 95 ---GQPIHAELS 103 (104)
T ss_dssp ---TEECCEEEC
T ss_pred ---CEEEEEEEc
Confidence 678899886
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.44 E-value=3.8e-13 Score=104.30 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCC-----CCCHHHHHHhhcCCCCeeEEEEeecCCC-CCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 131 ASSTLFVEGLPS-----DCSRREVAHIFRPFVGYKEVRLVSKESR-HPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 131 ~~~tLfVgnLp~-----~~teeeL~~lF~~fG~i~~vrl~~~~~~-~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
++++|++.|+-. +-.++||++.|++||.|.+|+|+.++.+ ...++++|++||+|.+.++|.+|++.|||..+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 378999999942 2347899999999999999999998632 11256788999999999999999999999999
Q ss_pred CCCCcEEEEcCcc
Q 027473 205 AFLGSLRSFFPNQ 217 (223)
Q Consensus 205 ~~~~~lrisfa~~ 217 (223)
.+..|+++|++.
T Consensus 97 -~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 -AGRKVVAEVYDQ 108 (118)
T ss_dssp -TTEECEEEEECH
T ss_pred -CCcEEEEEEcCh
Confidence 478999998754
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.3e-12 Score=98.52 Aligned_cols=75 Identities=12% Similarity=0.041 Sum_probs=60.5
Q ss_pred CCEEEEcCCC-------CCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 132 SSTLFVEGLP-------SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 132 ~~tLfVgnLp-------~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
.++|-|.-.. .++|+++|+++|++||.|.+|+|+. +++|||||+|.+.++|+.|++.+++.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~--------~~rGfaFVeF~~~~~A~~Ai~~~~~~---- 77 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS--------KKPGTAVVEFATVKAAELAVQNEVGL---- 77 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES--------SSSSEEEEEESCHHHHHHHHHTCCBC----
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc--------CCCCEEEEEECCHHHHHHHHHhcCCC----
Confidence 3455555443 5689999999999999999999982 23449999999999999999986653
Q ss_pred CCCCcEEEEcCcchh
Q 027473 205 AFLGSLRSFFPNQFF 219 (223)
Q Consensus 205 ~~~~~lrisfa~~~~ 219 (223)
.+..|+|+||+.+.
T Consensus 78 -~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 78 -VDNPLKISWLEGQP 91 (100)
T ss_dssp -SSSBCEEECSSCCC
T ss_pred -CCCeEEEEEccCCC
Confidence 36789999998764
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=4.3e-11 Score=92.23 Aligned_cols=79 Identities=14% Similarity=0.044 Sum_probs=65.3
Q ss_pred CCCCCEEEEcCCCCCC----------CHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 027473 129 PDASSTLFVEGLPSDC----------SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (223)
Q Consensus 129 ~~~~~tLfVgnLp~~~----------teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 198 (223)
+.+++.|.+.|+=..- .++||++.|++||.|.+|+|..+. ++||+||+|.+.++|++|++.||
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-------~~G~~fV~f~~~e~A~~Ai~~ln 76 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-------AQGNVYVKCPSIAAAIAAVNALH 76 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-------TTCCEEEECSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-------CcEEEEEEECCHHHHHHHHHHhC
Confidence 3457899999985432 346789999999999999986653 24599999999999999999999
Q ss_pred CceecCCCCCcEEEEcCcc
Q 027473 199 VMLTHQAFLGSLRSFFPNQ 217 (223)
Q Consensus 199 G~~l~~~~~~~lrisfa~~ 217 (223)
|..+ .+..|+++|+..
T Consensus 77 G~~f---~GR~i~v~~~~~ 92 (114)
T 3s6e_A 77 GRWF---AGKMITAAYVPL 92 (114)
T ss_dssp TCEE---TTEECEEEEECH
T ss_pred CCEE---CCEEEEEEEEcH
Confidence 9999 478999999854
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=3.3e-10 Score=88.47 Aligned_cols=64 Identities=14% Similarity=0.108 Sum_probs=58.0
Q ss_pred CCEEEEcCCCCC-CCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecC-HHHHHHHHHHhc--CceecC
Q 027473 132 SSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS-PAHAATAMDALQ--VMLTHQ 204 (223)
Q Consensus 132 ~~tLfVgnLp~~-~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~-~~~A~~Al~~Ln--G~~l~~ 204 (223)
+..|||+||+.+ +++++|+++|++||.|..|.++.+.. .|||+|.+ .++|++|++.|| |..|.+
T Consensus 18 G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 18 GCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred CeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 889999999999 99999999999999999999998874 79999999 899999999995 555643
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=4e-10 Score=83.86 Aligned_cols=72 Identities=17% Similarity=0.186 Sum_probs=60.8
Q ss_pred CCEEEEcCCCC----CCCH----HHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 132 SSTLFVEGLPS----DCSR----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 132 ~~tLfVgnLp~----~~te----eeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
..||+|.-++. +.-. .+|.+.|++||.|..+|++.++ +||+|.+.++|.+||+ |||+.+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----------~fVtF~d~~sAlaAi~-mnG~~v- 73 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----------MWVTFLEGSSALNVLS-LNGKEL- 73 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----------EEEEESSHHHHHHGGG-GTTCEE-
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----------EEEEECChHHHHHHHh-cCCeEe-
Confidence 34888877762 3333 6799999999999999999984 7999999999999998 999999
Q ss_pred CCCCCcEEEEcCcch
Q 027473 204 QAFLGSLRSFFPNQF 218 (223)
Q Consensus 204 ~~~~~~lrisfa~~~ 218 (223)
.+..|+|++++..
T Consensus 74 --~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 --LNRTITIALKSPS 86 (91)
T ss_dssp --TTEEEEEEECCCS
T ss_pred --CCeEEEEEeCCCC
Confidence 5788999998764
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.90 E-value=3.6e-09 Score=88.50 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=60.9
Q ss_pred CCCHHHHHHhhcCCCCeeEEEEeecCCC-CCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCc
Q 027473 143 DCSRREVAHIFRPFVGYKEVRLVSKESR-HPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPN 216 (223)
Q Consensus 143 ~~teeeL~~lF~~fG~i~~vrl~~~~~~-~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~ 216 (223)
+-.+++|++.|++||.|.+|+|+.+... ...|+++|++||+|.+.++|++|++.|||..+ .+..|+++|.+
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~---~gr~i~~~~~~ 211 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF---AGRKVVAEVYD 211 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS---SSSBCEEEECC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE---CCeEEEEEEcC
Confidence 3467889999999999999999876522 22357889999999999999999999999999 57889999986
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=4.6e-09 Score=78.61 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=59.3
Q ss_pred CCEEEEcCCCCC-----CCH----HHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCcee
Q 027473 132 SSTLFVEGLPSD-----CSR----REVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 132 ~~tLfVgnLp~~-----~te----eeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
..||+|.-++.+ .-. .+|.+.|++||.|..||++.++ +||+|.+.++|.+||+ |||+++
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----------EEEEEcChHHHHHHHh-cCCeee
Confidence 459999888743 222 5688999999999999999984 8999999999999998 999999
Q ss_pred cCCCCCcEEEEcCc
Q 027473 203 HQAFLGSLRSFFPN 216 (223)
Q Consensus 203 ~~~~~~~lrisfa~ 216 (223)
.+..|+|++..
T Consensus 83 ---~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 ---KGRAVKISGPS 93 (95)
T ss_dssp ---TTEEEEEECCC
T ss_pred ---CCeEEEEeccC
Confidence 57889998764
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.2e-05 Score=61.72 Aligned_cols=73 Identities=15% Similarity=0.078 Sum_probs=65.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCC-----CCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecC
Q 027473 130 DASSTLFVEGLPSDCSRREVAHIFRPF-----VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQ 204 (223)
Q Consensus 130 ~~~~tLfVgnLp~~~teeeL~~lF~~f-----G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~ 204 (223)
+..++|-+-|||..+++.-|+.|..++ |.|+.+.|++|.. -|+|+|.+...|-+|.-+|+|+.++
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~---------GAivef~d~~~AgKasLaL~G~ef~- 88 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN---------GAIIIFRDSKFAAKMLMILNGSQFQ- 88 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT---------EEEEECSCHHHHHHHHHHHSSEEET-
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC---------ceEEEEccchhhHHHHhhcCCeeec-
Confidence 336799999999999999999999999 9999999999973 5999999999999999999999995
Q ss_pred CCCCcEEEEc
Q 027473 205 AFLGSLRSFF 214 (223)
Q Consensus 205 ~~~~~lrisf 214 (223)
+..||+.-
T Consensus 89 --gr~Lr~gT 96 (117)
T 2l9w_A 89 --GKVIRSGT 96 (117)
T ss_dssp --TEEEEEEC
T ss_pred --CeEEEecC
Confidence 67788754
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.93 E-value=5.8e-05 Score=56.64 Aligned_cols=55 Identities=16% Similarity=0.408 Sum_probs=48.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 198 (223)
...++| +.|.+....||.++|++||.| .|+.+.|- -|||.|.+++.|..|++.+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT----------EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 456666 999999999999999999965 67888874 79999999999999998773
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.78 E-value=0.00029 Score=52.07 Aligned_cols=82 Identities=10% Similarity=0.127 Sum_probs=64.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcE--
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSL-- 210 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~l-- 210 (223)
++|.|.+||++.||+++.+.+++...+.-...+..+.... -..-.-|||.|.+.+++..-.+.++|+.+.+..+..-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~-~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY-PHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST-TCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC-CCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 4899999999999999999999999887777777662111 1223468999999999999999999999887654432
Q ss_pred EEEcC
Q 027473 211 RSFFP 215 (223)
Q Consensus 211 risfa 215 (223)
.|+||
T Consensus 81 ~VE~A 85 (91)
T 1uw4_A 81 IVEFA 85 (91)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 36665
No 212
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.44 E-value=0.00027 Score=53.47 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=60.8
Q ss_pred CCEEEEcCCCCCC-C----HHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCC
Q 027473 132 SSTLFVEGLPSDC-S----RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAF 206 (223)
Q Consensus 132 ~~tLfVgnLp~~~-t----eeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~ 206 (223)
.++|+|.||+.++ + .+.++++|..|+.+......+... =..|.|.++++|.+|...|+++.+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---------Rirv~F~~~~~A~~AR~~Lh~~~f~--- 72 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---------RVRINFSNPLSAADARLRLHKTEFL--- 72 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---------EEEEECSSTTHHHHHHHTSTTSEET---
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---------EEEEEeCChHHHHHHHHHhccceec---
Confidence 4699999999765 3 256799999999998877666652 3689999999999999999999995
Q ss_pred CCcEEEEcCc
Q 027473 207 LGSLRSFFPN 216 (223)
Q Consensus 207 ~~~lrisfa~ 216 (223)
+..|||=|+.
T Consensus 73 g~~~r~YFgq 82 (104)
T 1wey_A 73 GKEMKLYFAQ 82 (104)
T ss_dssp TEECEEECCC
T ss_pred CceeEEEecC
Confidence 5689999975
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.41 E-value=0.00018 Score=54.04 Aligned_cols=53 Identities=17% Similarity=0.420 Sum_probs=46.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 027473 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (223)
Q Consensus 134 tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 198 (223)
.++| +.|.+....||.++|++||.| .|+.+.|- -|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT----------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT----------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC----------eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999954 78888874 79999999999999999774
No 214
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.14 E-value=0.0017 Score=48.51 Aligned_cols=83 Identities=11% Similarity=0.134 Sum_probs=60.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCC--c
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLG--S 209 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~--~ 209 (223)
+-+|.|..||+..||+++.+.++++-.+.....+..+... +-..-.-|||.|.+.++...-.+..+|+.+-+..+. .
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~-~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSL-YPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSS-CCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCC-CCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 5589999999999999999999988765444444433111 011112589999999999999999999998876544 3
Q ss_pred EEEEcC
Q 027473 210 LRSFFP 215 (223)
Q Consensus 210 lrisfa 215 (223)
-.|+||
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 336665
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.73 E-value=0.0059 Score=46.06 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=46.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC-----CCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHH
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPF-----VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~f-----G~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~ 196 (223)
.++|.|.|||.++.++.|+-.|+.- |.|.+|..... -|+|+|.+.+.|++.|+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~-----------~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGC-----------GGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETT-----------EEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCC-----------cEEEEEcChHHHHHHhcC
Confidence 6799999999999999999999882 67777776541 599999999999999875
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.57 E-value=0.0064 Score=46.96 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=50.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceec
Q 027473 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTH 203 (223)
Q Consensus 131 ~~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~ 203 (223)
..+.|-|-+.|... -..|.+.|++||.|.+....... . +-.|.|.++.+|++||.. ||..|.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~-----N----WihI~Y~s~~~A~rAL~k-NG~ii~ 84 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTG-----N----WMHIRYQSKLQARKALSK-DGRIFG 84 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSS-----S----EEEEEESSHHHHHHHHTT-TTCEET
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCC-----C----eEEEEeCCHHHHHHHHHh-CCeEec
Confidence 36789999999996 45566889999999988863221 2 999999999999999975 999985
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.30 E-value=0.0031 Score=49.11 Aligned_cols=34 Identities=12% Similarity=0.018 Sum_probs=28.4
Q ss_pred EEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcC
Q 027473 161 EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (223)
Q Consensus 161 ~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG 199 (223)
+++|+.+. .+++|||||+|.+.++|++|++.+++
T Consensus 2 ~~kl~ln~-----~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNG-----KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEEC-----SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecC-----ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 56777775 35677999999999999999998875
No 218
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.56 E-value=0.0055 Score=47.49 Aligned_cols=41 Identities=7% Similarity=-0.202 Sum_probs=36.0
Q ss_pred CCCceEEEEEecCHHHHHHHHHHh-cCceecCCCCCcEEEEcCcch
Q 027473 174 GDPLILCFVDFVSPAHAATAMDAL-QVMLTHQAFLGSLRSFFPNQF 218 (223)
Q Consensus 174 G~~kG~aFVeF~~~~~A~~Al~~L-nG~~l~~~~~~~lrisfa~~~ 218 (223)
.+.+|+++|+|.+.++|++|++.| ||..+++ .+++.+++.+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G----~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG----EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC----EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC----ceecccccCc
Confidence 467789999999999999999999 9999953 7999998763
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.46 E-value=0.0058 Score=57.21 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=42.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHH
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD 195 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~ 195 (223)
.++|||. .|..+++.+|.+.|++||.|.++.+-.++ | .|+.|||.+.+++.++++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----S---EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----C---eEEEEEeCCHHHHHHHHh
Confidence 5799997 79999999999999999999999887665 3 399999999999886653
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.66 E-value=0.18 Score=47.37 Aligned_cols=55 Identities=16% Similarity=0.414 Sum_probs=47.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~Ln 198 (223)
...++|+ +|..+...+|.++|+.||.| +|+.+.+. +|||.|.+.+.|..+++++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt----------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT----------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS----------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC----------eEEEEECCHHHHHHHHHHHH
Confidence 4578886 99999999999999999954 77777663 89999999999999999885
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.38 E-value=0.11 Score=40.68 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=46.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEE-EEeec---------CCCCCCC-CCceEEEEEecCHHHHHHHHHHhcCc
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSK---------ESRHPGG-DPLILCFVDFVSPAHAATAMDALQVM 200 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~v-rl~~~---------~~~~~gG-~~kG~aFVeF~~~~~A~~Al~~LnG~ 200 (223)
...|.|=+.|.+.+..- -+.|++||.|.+- .+... +.++-.+ ....+-.|.|+++.+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~~~~V-I~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQV-IAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHHH-HHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHHHHH-HHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 45777888988776654 4789999999772 22110 0000000 0123789999999999999965 898
Q ss_pred eecC
Q 027473 201 LTHQ 204 (223)
Q Consensus 201 ~l~~ 204 (223)
.+.+
T Consensus 85 ii~G 88 (132)
T 3p3d_A 85 VFNG 88 (132)
T ss_dssp EETT
T ss_pred EeCc
Confidence 8864
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=67.46 E-value=1.1 Score=32.72 Aligned_cols=98 Identities=10% Similarity=0.129 Sum_probs=38.1
Q ss_pred CccccccccccccccccCCCCCCCcccccchhhhhccCC--CccCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 027473 34 SGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPS 110 (223)
Q Consensus 34 ~~~~~~~y~~~~~~r~~~~~~~~~~~i~~~~d~~~~~~~--~~~~~~~-~~~r~~~g~~~G~~~~~~~~~~~g~~~~~~~ 110 (223)
+..+++.--+++.|.. |-.|.+.+++. |+. .+++ |+.|.+. ++..|+. .|+|..+.++.+...-...
T Consensus 13 Lp~~~te~~L~~~F~~-~G~v~~v~i~~---d~~-~~kg~afV~f~~~~~A~~Ai~-~l~~~~~~g~~i~V~~a~~---- 82 (115)
T 4f25_A 13 LDKSIDNKALYDTFSA-FGNILSCKVVC---DEN-GSKGYGFVHFETQEAAERAIE-KMNGMLLNDRKVFVGRFKS---- 82 (115)
T ss_dssp CCTTCCHHHHHHHHGG-GSCEEEEEEEE---ETT-EEEEEEEEEESCHHHHHHHHH-HHTTCEETTEECEEEESSC----
T ss_pred CCCCCCHHHHHHHHhc-cCCEEEEEEee---cCC-CCCceEEEEECCHHHHHHHHH-HcCCCEECCEEEEEEECCC----
Confidence 4445555555555543 55566666664 432 3443 6788875 4446776 7899888876554321111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHH
Q 027473 111 AKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRRE 148 (223)
Q Consensus 111 ~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~~teee 148 (223)
...+.. .........++|||+|||+++|++.
T Consensus 83 ~~~~~~-------~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREA-------ELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC-----------------------------------
T ss_pred cccccc-------ccccccCCCCceEeCCCCCCccccc
Confidence 000000 0000112256899999999999874
No 223
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.59 E-value=28 Score=28.08 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=37.2
Q ss_pred EEEEcCCCCC---------CCHHHHHHhh--cCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHH
Q 027473 134 TLFVEGLPSD---------CSRREVAHIF--RPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHA 190 (223)
Q Consensus 134 tLfVgnLp~~---------~teeeL~~lF--~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A 190 (223)
+..|-|+|.. .+..+|++.| +.|..++ |+.+.++.+|++ ++.|+|.+.-..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g-----~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSG-----TAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEE-----EEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCce-----eEEEEecCChHH
Confidence 6677788862 4557899977 9999875 666666655653 999999876543
No 224
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=32.02 E-value=6.3 Score=35.93 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=12.9
Q ss_pred HHHhhcCCCCeeEEE
Q 027473 149 VAHIFRPFVGYKEVR 163 (223)
Q Consensus 149 L~~lF~~fG~i~~vr 163 (223)
|..||.+++.|..|.
T Consensus 9 L~~lF~p~pPl~~~~ 23 (437)
T 3pgw_S 9 LLALFAPRDPIPYLP 23 (437)
T ss_pred HHHhcCCCCCCcCCC
Confidence 789999999998873
No 225
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=30.22 E-value=1.1e+02 Score=20.19 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=36.8
Q ss_pred CCCHHHHHHhhcCCCCe-----eEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCceecCCCCCcEEEEcCc
Q 027473 143 DCSRREVAHIFRPFVGY-----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLTHQAFLGSLRSFFPN 216 (223)
Q Consensus 143 ~~teeeL~~lF~~fG~i-----~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l~~~~~~~lrisfa~ 216 (223)
.++..+|..++..-+.| -.+++..+ |.||+-.. +.|..+++.|++..+. +..++|+-++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-----------~s~v~v~~-~~~~~~~~~l~~~~i~---g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN-----------ASYVEILN-GKGPHVLKVMKNTTVK---GKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS-----------CEEEEECT-TCHHHHHHHHTTCCC------CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC-----------cEEEEECH-HHHHHHHHHhccccCc---CceEEEEECC
Confidence 35666677666655544 34555433 88999876 4578899999998885 4566666553
No 226
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=22.85 E-value=2.1e+02 Score=21.35 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=21.7
Q ss_pred CCCeeEEEEeecCCCCCCCCCceEEEEE-ecCHHHHHHHHHHhc
Q 027473 156 FVGYKEVRLVSKESRHPGGDPLILCFVD-FVSPAHAATAMDALQ 198 (223)
Q Consensus 156 fG~i~~vrl~~~~~~~~gG~~kG~aFVe-F~~~~~A~~Al~~Ln 198 (223)
+-.|.+|++-.|-.- --.||. |-+.++.+.++++|+
T Consensus 43 ~vtVt~V~vS~Dl~~-------AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSA-------CRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCC-------EEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcE-------EEEEEEecCChhhHHHHHHHHH
Confidence 568899999888631 134666 555555444554444
No 227
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=22.81 E-value=1.5e+02 Score=18.65 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=44.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEeecCCCCCCCCCceEEEEEecCHHHHHHHHHHhcCcee
Q 027473 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVMLT 202 (223)
Q Consensus 132 ~~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~~~~~~~~gG~~kG~aFVeF~~~~~A~~Al~~LnG~~l 202 (223)
..++.|.++.-.-=...|+..+.. ..|..+.+-... + -+.|+|.+.+...++|+.+ ||.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~-----~----~~~v~~~~~~~i~~~i~~~-Gy~~ 65 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE-----A----VVAGNKEDVDKYIKAVEAA-GYQA 65 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE-----E----EEEEEGGGHHHHHHHHHHT-TCEE
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC-----C----EEEEEECCHHHHHHHHHHc-CCce
Confidence 357889999988778889999998 888888764432 1 5788888666677777763 6654
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.38 E-value=34 Score=28.98 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=26.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEEe
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLV 165 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl~ 165 (223)
..+.|+|||++++..-|.+++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 367899999999999999999865555555443
No 229
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.93 E-value=59 Score=27.42 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=25.2
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeeEEEE
Q 027473 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRL 164 (223)
Q Consensus 133 ~tLfVgnLp~~~teeeL~~lF~~fG~i~~vrl 164 (223)
..+.|+|||++++...|.+++.. ..+....+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46789999999999999999987 66655444
Done!