BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027477
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 213 bits (543), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 102/168 (60%), Positives = 126/168 (75%), Gaps = 1/168 (0%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
+V+ D+ I + GRIV+ LY VVPKT NFRALCTGE G G SGKPLHFKG FHRI+
Sbjct: 5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
F+IQGGD RG+G G +SIYG FPDENFK KH+ GV+SM N+GP++NGSQFF+ TV
Sbjct: 65 PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
K WLDG+HVVFG+V++G+D V A+E G+ SGKP K IAD G++
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVESN-GSQSGKPVKDCMIADCGQL 171
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 199 bits (507), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 95/175 (54%), Positives = 124/175 (70%), Gaps = 4/175 (2%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
+V+ D+ I+ + GRIV+ LY VPKT ENFRALCTGEKG G SGKPLH+K FHR++
Sbjct: 9 KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK---HSHAGVVSMVNSGPDSNGSQFFI 163
F+IQGGD RG+G G +SIYG TF DE+F K H+ G +SM N+GP++NGSQFFI
Sbjct: 69 PNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFI 128
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNK 218
T WLDG+HVVFG+VI G+D V +E G+ SGK R ++ ++D GE+ +K
Sbjct: 129 CTAATPWLDGKHVVFGRVIDGLDVVKKVE-RLGSSSGKTRSRIVVSDCGEVAADK 182
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 194 bits (492), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/176 (56%), Positives = 124/176 (70%), Gaps = 7/176 (3%)
Query: 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPF 102
++T +VY D+ I ++ +GR+VIGL+G+ VPKTV+NF AL TGEKG G +K F
Sbjct: 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKF 62
Query: 103 HRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFF 162
HR++ F+IQGGD RGDG G SIYG FPDENFK+KH G VSM N+G D+NGSQFF
Sbjct: 63 HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 122
Query: 163 ITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNK 218
ITTVK +WLDG+HVVFGKV++GM+ V +E KP K VTIAD G+I K
Sbjct: 123 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 194 bits (492), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 99/176 (56%), Positives = 124/176 (70%), Gaps = 7/176 (3%)
Query: 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPF 102
++T +VY D+ I ++ +GR+VIGL+G+ VPKTV+NF AL TGEKG G +K F
Sbjct: 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG-------YKDSKF 62
Query: 103 HRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFF 162
HR++ F+IQGGD RGDG G SIYG FPDENFK+KH G VSM N+G D+NGSQFF
Sbjct: 63 HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 122
Query: 163 ITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNK 218
ITTVK +WLDG+HVVFGKV++GM+ V +E KP K VTIAD G+I K
Sbjct: 123 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEK 178
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 192 bits (489), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 96/171 (56%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
Query: 42 FEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKP 101
F+ VY D+ I + GRI + L+ VP T ENFRALCTGEKG G SGKPL + G
Sbjct: 16 FQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSF 75
Query: 102 FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQF 161
FHRI+ F+IQGGD RGDG G +SIYG F DENF H ++SM N+GP++NGSQF
Sbjct: 76 FHRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQF 135
Query: 162 FITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 212
FITTV WLDG+HVVFGKV++GM+ V +IE G+ +GKP K V I SG
Sbjct: 136 FITTVPCPWLDGKHVVFGKVLEGMEVVKSIE-KCGSQNGKPTKSVCITASG 185
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 192 bits (489), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 100/172 (58%), Positives = 123/172 (71%), Gaps = 7/172 (4%)
Query: 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPF 102
+T +V+ DV I ++ +GRIVIGL+G+VVPKTVENF AL TGEKG G +KG F
Sbjct: 13 SVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKF 65
Query: 103 HRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFF 162
HR++ F+IQGGDI GDG G SIYG TFPDENFK+KH G VSM N+GPD+NGSQFF
Sbjct: 66 HRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFF 125
Query: 163 ITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
IT K +WLDG+HVVFGKVI GM V++IE A +P +I +SG+I
Sbjct: 126 ITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKI 177
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/169 (56%), Positives = 118/169 (69%), Gaps = 2/169 (1%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTG-ASGKPLHFKGKPFHRI 105
RV+ DVDI +R+GRIV+ L+ +VPKT ENFRALCTGEKG G +GKPLHFKG PFHRI
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 106 VSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITT 165
+ F+IQGGD +G G +SIYG F DENF KH G++SM N+G ++NGSQFFITT
Sbjct: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 136
Query: 166 VKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
V LDG+HVVFG+VI+GM +E KP K IA+ GE+
Sbjct: 137 VPTPHLDGKHVVFGQVIKGMGVAKILE-NVEVKGEKPAKLCVIAECGEL 184
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 96/176 (54%), Positives = 122/176 (69%), Gaps = 7/176 (3%)
Query: 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPF 102
++T +VY D+ I ++ +GR++ GL+G+ VPKTV+NF AL TGEKG G +K F
Sbjct: 3 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKF 55
Query: 103 HRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFF 162
HR++ F+IQGGD RGDG G SIYG FPDENFK+KH G VSM N+G D+NGSQFF
Sbjct: 56 HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 115
Query: 163 ITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEIPKNK 218
ITTVK +WLDG+HVVFGKV++GM+ V +E KP K V IAD G+I K
Sbjct: 116 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEK 171
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 191 bits (484), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/172 (55%), Positives = 121/172 (70%), Gaps = 7/172 (4%)
Query: 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPF 102
++T +VY D+ I ++ +GR++ GL+G+ VPKTV+NF AL TGEKG G +K F
Sbjct: 13 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKF 65
Query: 103 HRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFF 162
HR++ F+IQGGD RGDG G SIYG FPDENFK+KH G VSM N+G D+NGSQFF
Sbjct: 66 HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 125
Query: 163 ITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
ITTVK +WLDG+HVVFGKV++GM+ V +E KP K V IAD G+I
Sbjct: 126 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKI 177
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 120/172 (69%), Gaps = 7/172 (4%)
Query: 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPF 102
+T +V+ DV I ++ +GRIVIGL+G VVPKTVENF AL TGEKG G +KG F
Sbjct: 5 SVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIF 57
Query: 103 HRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFF 162
HR++ F+IQGGD DG G SIYG TFPDENFK+KH G VSM N+GPD+NGSQFF
Sbjct: 58 HRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFF 117
Query: 163 ITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
IT K +WLDG+HVVFGKV+ GM V++IE A +P TI +SG+I
Sbjct: 118 ITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/168 (53%), Positives = 117/168 (69%), Gaps = 8/168 (4%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
+VY DV+ + Q +GR+V LY +VPKT ENFRALCTGEKG G + G PFHR++
Sbjct: 3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVI 55
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
F++QGGD G+G G SIYGG FPDENFK H G++SM N+GP++NGSQFFITTV
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTV 115
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
WLDG+HVVFG+V+ G D V +E G+ SG + ++ +A SGE+
Sbjct: 116 PCPWLDGKHVVFGEVVDGYDIVKKVE-SLGSPSGATKARIVVAKSGEL 162
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 116/168 (69%), Gaps = 2/168 (1%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
+V+ D+ I+ GRI+ L+ + P+T ENFRALCTGEK G+ GK LH+K FHRI+
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
F+ QGGDI G+G G +SIYG +F DENF +KH G++SM N+GP++N SQFFIT V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
WLDG+HVVFGKVI+GM+ V +E G SG ++ V I D GE+
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVKRSVVITDCGEL 170
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 187 bits (474), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 114/167 (68%), Gaps = 8/167 (4%)
Query: 48 VYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVS 107
VYLDVD + LGR+V+ L VVPKT ENFRALCTGEKG G +KG FHR++
Sbjct: 7 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 59
Query: 108 GFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVK 167
F+ Q GD +G G SIYG FPDENF +KH GV+SM N+GP++NGSQFFI T+K
Sbjct: 60 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 119
Query: 168 ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
WLDG+HVVFG VI+GMD V IE G+ SG+ KK+ I D G++
Sbjct: 120 TDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGRTSKKIVITDCGQL 165
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 186 bits (473), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 114/167 (68%), Gaps = 8/167 (4%)
Query: 48 VYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVS 107
VYLDVD + LGR+V+ L VVPKT ENFRALCTGEKG G +KG FHR++
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 58
Query: 108 GFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVK 167
F+ Q GD +G G SIYG FPDENF +KH GV+SM N+GP++NGSQFFI T+K
Sbjct: 59 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 118
Query: 168 ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
WLDG+HVVFG VI+GMD V IE G+ SG+ KK+ I D G++
Sbjct: 119 TDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGRTSKKIVITDCGQL 164
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 186 bits (473), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 114/167 (68%), Gaps = 8/167 (4%)
Query: 48 VYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVS 107
VYLDVD + LGR+V+ L VVPKT ENFRALCTGEKG G +KG FHR++
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 58
Query: 108 GFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVK 167
F+ Q GD +G G SIYG FPDENF +KH GV+SM N+GP++NGSQFFI T+K
Sbjct: 59 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 118
Query: 168 ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
WLDG+HVVFG VI+GMD V IE G+ SG+ KK+ I D G++
Sbjct: 119 TDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGRTSKKIVITDCGQL 164
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 186 bits (473), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 114/167 (68%), Gaps = 8/167 (4%)
Query: 48 VYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVS 107
VYLDVD + LGR+V+ L VVPKT ENFRALCTGEKG G +KG FHR++
Sbjct: 5 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 57
Query: 108 GFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVK 167
F+ Q GD +G G SIYG FPDENF +KH GV+SM N+GP++NGSQFFI T+K
Sbjct: 58 SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 117
Query: 168 ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
WLDG+HVVFG VI+GMD V IE G+ SG+ KK+ I D G++
Sbjct: 118 TDWLDGKHVVFGHVIEGMDVVKKIE-SFGSKSGRTSKKIVITDCGQL 163
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 184 bits (467), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 114/167 (68%), Gaps = 2/167 (1%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
+V+ D+ I+ GRI+ L+ + P+T ENFRALCTGEK G+ GK LH+K FHRI+
Sbjct: 5 KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
F+ QGGDI G+G G +SIYG +F DENF +KH G++SM N+GP++N SQF IT V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 213
WLDG+HVVFGKVI+GM+ V +E G SG ++ V I D GE
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREME-KEGAKSGYVKRSVVITDCGE 169
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 180 bits (457), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 111/169 (65%), Gaps = 1/169 (0%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASG-KPLHFKGKPFHRI 105
R + D+ I Q GR+V L+ V PKT ENFR LCTGEKGTG S KPLH+K FHR+
Sbjct: 28 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 106 VSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITT 165
V F++QGGD G+G+G +SIYGG F DE+F +KH+ A ++SM N G D+NGSQFFITT
Sbjct: 88 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITT 147
Query: 166 VKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
LDG HVVFG+VI G + V IE + KP +V I GE+
Sbjct: 148 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 1/169 (0%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASG-KPLHFKGKPFHRI 105
R + D+ I Q GR+V L+ V PKT ENFR LCTGEKGTG S KPLH+K FHR+
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 106 VSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITT 165
V F++QGGD G+G+G +SIYGG F DE+F +KH+ ++SM N G D+NGSQFFITT
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 166 VKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
LDG HVVFG+VI G + V IE + KP +V I GE+
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 109/169 (64%), Gaps = 1/169 (0%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGA-SGKPLHFKGKPFHRI 105
RV+LDV I+ GRIV+ LY + P+T NF LCTG GTG SGKPLH+KG FHR+
Sbjct: 8 RVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRV 67
Query: 106 VSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITT 165
+ F+IQGGD +GDG G +SIYGG F DE F +KH VVSM N GP++NGSQFFITT
Sbjct: 68 IKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITT 127
Query: 166 VKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
A L+ HVVFGKV+ G + V IE +P V I + GE+
Sbjct: 128 TPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 118/173 (68%), Gaps = 8/173 (4%)
Query: 42 FEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKP 101
F + V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG
Sbjct: 8 FMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSC 60
Query: 102 FHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQF 161
FHRI+ GF+ QGGD R +G G SIYG F DENF +KH+ G++SM N+GP++NGSQF
Sbjct: 61 FHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQF 120
Query: 162 FITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
FI T K WLDG+HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 121 FICTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 172
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 88/169 (52%), Positives = 110/169 (65%), Gaps = 1/169 (0%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASG-KPLHFKGKPFHRI 105
R + D+ I Q GR+V L+ V PKT ENFR LCTGEKGTG S KPLH+K FHR+
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 106 VSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITT 165
V F++QGGD G+G+G +SIYGG F DE+F +KH+ ++SM N G D+NGSQFFITT
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 166 VKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
LDG HVVFG+VI G + V IE + KP +V I GE+
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 115/172 (66%), Gaps = 7/172 (4%)
Query: 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPF 102
++T RVY D++I + +GRIVIGL+G+ VPKT NF L KG G + G F
Sbjct: 4 KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKF 56
Query: 103 HRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFF 162
HR+++ F+IQGGD RGDG G SIYG F DENFK+KH AG +SM N+G D+NGSQFF
Sbjct: 57 HRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFF 116
Query: 163 ITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
ITTVK WLDG HVVFGK+++GMD V IE +P++ V IA SG I
Sbjct: 117 ITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHI 168
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 117/171 (68%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 21 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 73
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
RI+ GF+ QGGD R +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI
Sbjct: 74 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 133
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG+HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 134 CTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 183
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 178 bits (451), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 117/171 (68%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
RI+ GF+ QGGD R +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG+HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 117/171 (68%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
RI+ GF+ QGGD R +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG+HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 117/171 (68%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 53
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
RI+ GF+ QGGD R +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI
Sbjct: 54 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 113
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG+HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 114 CTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 163
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 117/171 (68%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
RI+ GF+ QGGD R +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG+HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 112/166 (67%), Gaps = 8/166 (4%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
V+ D+ LG I L+ VVPKT NFRALCTGEKG G + G FHR++
Sbjct: 3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVI 55
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
F++QGGD G+G G SIYG F DENF++KH+ G++SM N+GP++NGSQFFITTV
Sbjct: 56 PDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 212
SWLDG+HVVFG+VI GM+ V AIE G+ SGKPR ++ IA G
Sbjct: 116 VTSWLDGKHVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKCG 160
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/167 (53%), Positives = 115/167 (68%), Gaps = 8/167 (4%)
Query: 48 VYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVS 107
V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FHRI+
Sbjct: 10 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 62
Query: 108 GFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVK 167
GF+ QGGD R +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI T K
Sbjct: 63 GFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 122
Query: 168 ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
WLDG HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 123 TKWLDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 168
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 116/171 (67%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
RI+ GF+ QGGD R +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 115 CTAKTKWLDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 116/171 (67%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
RI+ GF+ QGGD R +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 115 CTAKTEWLDGXHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/171 (52%), Positives = 113/171 (66%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+T +VY D+ I ++ +GR+VIGL+G VPKTVENF+ L +GE G G +KG FH
Sbjct: 4 VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFH 56
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
R++ F+IQGGD DG G SIYG F DEN KIKH G VSM N+GP+SNGSQFF+
Sbjct: 57 RVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKH-FVGAVSMANAGPNSNGSQFFV 115
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
TT WLDG HVVFGKV++GMD V +E + KP+K V I D G +
Sbjct: 116 TTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 177 bits (448), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 117/171 (68%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
RI+ GF+ QGGD R +G G SIYG F DENF +KH+ G+++M N+GP++NGSQFFI
Sbjct: 55 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFI 114
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG+HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 177 bits (448), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 117/171 (68%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
+I+ GF+ QGGD R +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI
Sbjct: 55 KIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG+HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/171 (51%), Positives = 116/171 (67%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 53
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
RI+ GF+ QGGD R +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI
Sbjct: 54 RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 113
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG+HVVFG V +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 114 CTAKTKWLDGKHVVFGAVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 163
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 109/167 (65%), Gaps = 2/167 (1%)
Query: 48 VYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVS 107
V+ DV I Q +GR+ I L+ VVPKT ENFR CTGE G P+ +KG FHR++
Sbjct: 13 VFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFHRVIK 70
Query: 108 GFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVK 167
F+IQGGD V GDG G SIY G F DENFK++HS G++SM NSGP +NG QFFIT K
Sbjct: 71 DFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSK 130
Query: 168 ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
WLDG+HVVFGK+I G+ + IE + KP+ V I+ GE+
Sbjct: 131 CDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 8/172 (4%)
Query: 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPF 102
E+T +VY DV I+ + LGRI IGL+G+ P T ENFR LCTGE G G +K F
Sbjct: 9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIF 61
Query: 103 HRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFF 162
HR++ F+IQGGD DG G SIYG F DEN +KH G +SM N+GP++NGSQFF
Sbjct: 62 HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFF 120
Query: 163 ITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
ITT WLDG HVVFGKV+ GMD V IE +P K V I SGE+
Sbjct: 121 ITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 108/172 (62%), Gaps = 8/172 (4%)
Query: 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPF 102
E+T +VY DV I+ + LGRI IGL+G+ P T ENFR LCTGE G G +K F
Sbjct: 9 EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIF 61
Query: 103 HRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFF 162
HR++ F+IQGGD DG G SIYG F DEN +KH G +SM N+GP++NGSQFF
Sbjct: 62 HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKH-FVGALSMANAGPNTNGSQFF 120
Query: 163 ITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
ITT WLDG HVVFGKV+ GMD V IE +P K V I SGE+
Sbjct: 121 ITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 116/171 (67%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
RI+ GF+ QGG+ +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI
Sbjct: 55 RIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG+HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 174 bits (441), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 8/167 (4%)
Query: 48 VYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVS 107
V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FHRI+
Sbjct: 6 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 58
Query: 108 GFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVK 167
GF+ QGG+ +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI T K
Sbjct: 59 GFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 118
Query: 168 ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
WLDG+HVVFGKV +GM+ V A+E G+ +GK KK+TIAD G++
Sbjct: 119 TEWLDGKHVVFGKVKEGMNIVEAME-RFGSRNGKTSKKITIADCGQL 164
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 174 bits (440), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
+VY+D+ I + GRI + L VVP T ENFR LCT EKG G FKG FHRI+
Sbjct: 13 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRII 65
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
F+ QGGD +G G SIYG F DENF +KH+ G++SM NSGP++NGSQFF+T
Sbjct: 66 PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 125
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 213
K WLDG+HVVFG+V +G+D + IE G+ GKP++KV IAD GE
Sbjct: 126 KTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 171
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 173 bits (439), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 115/167 (68%), Gaps = 8/167 (4%)
Query: 48 VYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVS 107
V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FHRI+
Sbjct: 5 VFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIP 57
Query: 108 GFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVK 167
GF+ QGGD +G G SIYG F DENF +KH+ G++SM N+GP++NGSQFFI T K
Sbjct: 58 GFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAK 117
Query: 168 ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
WLDG+HVVFGKV +GM+ V A++ G+ +GK KK+TIAD G++
Sbjct: 118 TEWLDGKHVVFGKVKEGMNIVEAMK-RFGSRNGKTSKKITIADCGQL 163
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 173 bits (439), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 88/167 (52%), Positives = 111/167 (66%), Gaps = 8/167 (4%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
+VY+D+ I + GRI + L VVP T ENFR LCT EKG G FKG FHRI+
Sbjct: 5 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRII 57
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
F+ QGGD +G G SIYG F DENF +KH+ G++SM NSGP++NGSQFF+T
Sbjct: 58 PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 117
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 213
K WLDG+HVVFG+V +G+D + IE G+ GKP++KV IAD GE
Sbjct: 118 KTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 163
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 8/168 (4%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
RV+ D+ I GRIV+ L +VP+T ENFRALCTGE+G G + FHR++
Sbjct: 12 RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRVI 64
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
F+ QGGD V+GDG G SIYG F DENF+++H GV+SM NSGP++NGSQFFI T
Sbjct: 65 PQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTT 124
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
K WLDG+HVVFG+V+ G + V +E G+ SGK ++ V I+ GE+
Sbjct: 125 KCDWLDGKHVVFGRVVDGQNVVKKME-SVGSKSGKVKEPVIISRCGEL 171
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 170 bits (430), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 87/171 (50%), Positives = 113/171 (66%), Gaps = 8/171 (4%)
Query: 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFH 103
+ V+ D+ ++ + LGR+ L+ VPKT ENFRAL TGEKG G +KG FH
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 53
Query: 104 RIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFI 163
RI+ GF QGGD R +G G SIYG F DENF +KH+ G++S N+GP++NGSQFFI
Sbjct: 54 RIIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFI 113
Query: 164 TTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
T K WLDG+HVVFGKV +G + V A E G+ +GK KK+TIAD G++
Sbjct: 114 CTAKTEWLDGKHVVFGKVKEGXNIVEAXE-RFGSRNGKTSKKITIADCGQL 163
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 167 bits (423), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 107/167 (64%), Gaps = 8/167 (4%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
+VY D+ I + GRI L VVP T ENFR LCT EKG G FKG FHRI+
Sbjct: 14 QVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSSFHRII 66
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
F QGGD +G G SIYG F DENF +KH+ G++S NSGP++NGSQFF+T
Sbjct: 67 PQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCD 126
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 213
K WLDG+HVVFG+V +G+D + IE G+ GKP++KV IAD GE
Sbjct: 127 KTDWLDGKHVVFGEVTEGLDVLRQIE-AQGSKDGKPKQKVIIADCGE 172
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 112/168 (66%), Gaps = 8/168 (4%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
V+ ++ I ++ GRIV LY + VPKT +NFR L TG+ G G +K FHR++
Sbjct: 4 NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVI 56
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
F++QGGD R +G G SIYG F DENF++KH+ G++SM N+G ++NGSQFFITTV
Sbjct: 57 PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
SWLDG+HVVFG+VI+G+D V +E G G+ SGK + I D G +
Sbjct: 117 PTSWLDGKHVVFGEVIEGLDIVRKVE-GKGSASGKTNATIKITDCGTV 163
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 112/168 (66%), Gaps = 8/168 (4%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIV 106
V+ ++ I ++ GRIV LY + VPKT +NFR L TG+ G G +K FHR++
Sbjct: 5 NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVI 57
Query: 107 SGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTV 166
F++QGGD R +G G SIYG F DENF++KH+ G++SM N+G ++NGSQFFITTV
Sbjct: 58 PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 117
Query: 167 KASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
SWLDG+HVVFG+VI+G+D V +E G G+ SGK + I D G +
Sbjct: 118 PTSWLDGKHVVFGEVIEGLDIVRKVE-GKGSASGKTNATIKITDCGTV 164
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 107/167 (64%), Gaps = 1/167 (0%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTG-ASGKPLHFKGKPFHRI 105
+ + D++I + +GRI+ L+ + PKT +NF LC+GEKG G +GK L +KG FHR+
Sbjct: 21 QCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRV 80
Query: 106 VSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITT 165
V F+IQGGD G+GKG +SIYGG F DENF +KH A ++SM N G +NGSQFFITT
Sbjct: 81 VKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITT 140
Query: 166 VKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 212
A LDG HVVFG VI G + + IE + +P V + D G
Sbjct: 141 KPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCG 187
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 86/177 (48%), Positives = 113/177 (63%), Gaps = 10/177 (5%)
Query: 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPF 102
E + VY DV E+ LGRIV+ L +VPKT +NFR LC KG G +KG F
Sbjct: 25 EASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTF 77
Query: 103 HRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFF 162
HRI+ GF++QGGD +G G SIYG FPDENF++KH+ G++SM N G +NGSQFF
Sbjct: 78 HRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFF 137
Query: 163 ITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRK--KVTIADSGEIPKN 217
IT K WLD +HVVFG+V++GMD V+ I G+ SG+ +K ++ I D G + N
Sbjct: 138 ITLGKTQWLDEKHVVFGEVVEGMDVVHKI-AKYGSESGQVKKGYRIEIRDCGVLGSN 193
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 107/167 (64%), Gaps = 8/167 (4%)
Query: 48 VYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVS 107
V+ DV + + LGRI + L+ +VP+T ENFRALCTGEKG G FK FHR++
Sbjct: 9 VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIP 61
Query: 108 GFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVK 167
FV QGGDI + DG G SIYG F DENF +KH+ G++SM N G ++N SQF IT K
Sbjct: 62 DFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKK 121
Query: 168 ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214
A LD +HVVFG V GMDTV IE G+ G +++TI + G+I
Sbjct: 122 AEHLDFKHVVFGFVKDGMDTVKKIE-SFGSPKGSVCRRITITECGQI 167
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 5/170 (2%)
Query: 48 VYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVS 107
V++D+++ LG+ L+ +VPKT ENFR CTGE + P+ +K FHR++
Sbjct: 62 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGE--YKVNNLPVGYKNTIFHRVIK 119
Query: 108 GFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVK 167
F+IQGGD + +G GS SIYG F DENF IKH G++SM NSGP++NG QFFITT K
Sbjct: 120 EFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKK 179
Query: 168 ASWLDGEHVVFGKVIQG--MDTVYAIEGGAGT-YSGKPRKKVTIADSGEI 214
WLDG++VVFG++I + + IE + T Y KP+ + + + GE+
Sbjct: 180 CEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 102/169 (60%), Gaps = 10/169 (5%)
Query: 49 YLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSG 108
Y V E ++GRIV L+ + VPKT +NFR LC G G ++ FHRI+
Sbjct: 11 YAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRESTFHRIIPN 63
Query: 109 FVIQGGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKA 168
F+IQGGD RG+G G SIYG F DENF KH G++SM N+GP++NGSQFFITT
Sbjct: 64 FMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVT 123
Query: 169 SWLDGEHVVFGKVI--QGMDTVYAIEG-GAGTYSGKPRKKVTIADSGEI 214
SWLDG+HVVFG+V + V IE G+ + S + + I + GE+
Sbjct: 124 SWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 12/134 (8%)
Query: 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGD 115
E +G IV+ LY + PKT +NF L +G ++ G FHRI+ F+IQGGD
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGD 66
Query: 116 IVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGE 174
G G+G SIYG F DE + +K + AG+++M N+GPD+NGSQFF+T WLDG+
Sbjct: 67 PT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGK 125
Query: 175 HVVFGKVIQGMDTV 188
H +FG+V QG+ V
Sbjct: 126 HTIFGRVCQGIGMV 139
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 12/134 (8%)
Query: 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGD 115
E +G IV+ LY + PKT +NF L +G ++ G FHRI+ F+IQGGD
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGD 66
Query: 116 IVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGE 174
G G+G SIYG F DE + +K + AG+++M N+GPD+NGSQFF+T WLDG+
Sbjct: 67 PT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGK 125
Query: 175 HVVFGKVIQGMDTV 188
H +FG+V QG+ V
Sbjct: 126 HTIFGRVCQGIGMV 139
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 12/134 (8%)
Query: 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGD 115
E +G IV+ LY + PKT +NF L +G ++ G FHRI+ F+IQGGD
Sbjct: 17 ETSMGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGD 66
Query: 116 IVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGE 174
G G+G SIYG F DE + +K + AG+++M N+GPD+NGSQFF+T WLDG+
Sbjct: 67 PT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGK 125
Query: 175 HVVFGKVIQGMDTV 188
H +FG+V QG+ V
Sbjct: 126 HTIFGRVCQGIGMV 139
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 91/156 (58%), Gaps = 17/156 (10%)
Query: 59 LGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVR 118
+G I I ++ + PKT ENF ALC ++ G FHR + GF++Q GD
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPT- 57
Query: 119 GDGKGSDSIYGGTFPDENFK-IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVV 177
G G+G +SI+G F DE + +KH+ GVVSM N+GP++NGSQFFIT K LD ++ V
Sbjct: 58 GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 178 FGKVIQGMDTVYAIEG---GAGTYSGKPRKKVTIAD 210
FGKVI G++T+ +E TY +P V I D
Sbjct: 118 FGKVIDGLETLDELEKLPVNEKTY--RPLNDVHIKD 151
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/146 (42%), Positives = 80/146 (54%), Gaps = 12/146 (8%)
Query: 58 RLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIV 117
LG + LY PKT NF LC E G + FHR++ FVIQGGD
Sbjct: 46 NLGDFEVELYWYHSPKTCLNFYTLC--EMG--------FYDNTIFHRVIPNFVIQGGDPT 95
Query: 118 RGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHV 176
G GKG SIYG F DE N ++KH+ AG++SM N+GP++N SQFFIT LDG+H
Sbjct: 96 -GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHT 154
Query: 177 VFGKVIQGMDTVYAIEGGAGTYSGKP 202
+F +V + M + I T + KP
Sbjct: 155 IFARVSKNMTCIENIASVQTTATNKP 180
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 84/135 (62%), Gaps = 12/135 (8%)
Query: 59 LGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVR 118
+G I I ++ + PKT ENF ALC ++ G FHR + GF++Q GD
Sbjct: 15 VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPT- 63
Query: 119 GDGKGSDSIYGGTFPDENFK-IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVV 177
G G+G +SI+G F DE + +KH+ GVVSM N+GP++NGSQFFIT K LD ++ V
Sbjct: 64 GTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 178 FGKVIQGMDTVYAIE 192
FGKVI G++T+ +E
Sbjct: 124 FGKVIDGLETLDELE 138
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 88/162 (54%), Gaps = 13/162 (8%)
Query: 51 DVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFV 110
D I +G I L+ PKTVENF C + ++ G FHRI+ GF+
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNG-------YYNGHTFHRIIKGFM 71
Query: 111 IQGGDIVRGDGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKAS 169
IQ GD G G G +SI+GG F DE + ++H +SM N+G ++NGSQFFIT V
Sbjct: 72 IQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTP 130
Query: 170 WLDGEHVVFGKVIQGMDTVYAIEG-GAGTYSGKPRKKVTIAD 210
WLD +H VFG+V +GM+ V I + KP + V+I +
Sbjct: 131 WLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 84/153 (54%), Gaps = 12/153 (7%)
Query: 59 LGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVR 118
+G I I L+ + KTV+NF +G ++ FHR++ F++Q GD
Sbjct: 14 MGDIHISLFYKECKKTVQNFSV-------HSING---YYNNCIFHRVIKHFMVQTGD-PS 62
Query: 119 GDGKGSDSIYGGTFPDENF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVV 177
GDG G +SI+G F DE F + HS +VSM N GP++NGSQFFITTV WLD +H V
Sbjct: 63 GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122
Query: 178 FGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 210
FGKV QG V IE KP + + I +
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 16/156 (10%)
Query: 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRG 119
G + L+ PK +NF AL ASG ++K FH+ + GF+IQGGD G
Sbjct: 26 GDLKFELFCSQCPKACKNFLAL-------SASG---YYKNTIFHKNIKGFIIQGGDPT-G 74
Query: 120 DGKGSDSIYGGTFPDENF-KIKHSHAGVVSMVNSG----PDSNGSQFFITTVKASWLDGE 174
GKG +SIYG F DE + ++K+ G++SM + G P++NGSQFFIT L+GE
Sbjct: 75 TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGE 134
Query: 175 HVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 210
+V+FGK+I G +T+ +E S KP ++ I D
Sbjct: 135 YVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 14/133 (10%)
Query: 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRG 119
G I I L+ + PK NF LC ++ FHR+V GF++QGGD G
Sbjct: 34 GDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPT-G 82
Query: 120 DGKGSDSIYGGTFPDE-NFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVF 178
G G +SIYG F DE + +++ + G+V+M N+G NGSQFF T +A L+ +H +F
Sbjct: 83 TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIF 142
Query: 179 GKVIQGMDTVYAI 191
GKV DTVY +
Sbjct: 143 GKVTG--DTVYNM 153
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 87/152 (57%), Gaps = 15/152 (9%)
Query: 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRG 119
G + + L+ + PKT ENF LC K ++ G FHR + FVIQGGD
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPTGT 78
Query: 120 DGKGSDSIYGGTFPDENFKIKHSHAG--VVSMVNSGPDSNGSQFFITTVKASWLDGEHVV 177
G G +S +G F DE F+ SH G ++SM NSGP+SN SQFFIT ++LD +H +
Sbjct: 79 -GTGGESYWGKPFKDE-FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136
Query: 178 FGKVIQGMDTVYAIEG-GAGTYSGKPRKKVTI 208
FG+V+ G D + A+E + + +P++++ I
Sbjct: 137 FGRVVGGFDVLTAMENVESDPKTDRPKEEIRI 168
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 78/157 (49%), Gaps = 12/157 (7%)
Query: 60 GRIVIGLYGQVVPKTVENFRALCTGEKG---TGASGKPL--HFKGKPFHRIVSGFVIQGG 114
G I I L+G PKTV NF L G K ASG P + G FHR++ GF+IQGG
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 115 DIVRGDGKGSDSIYGGTF-PDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDG 173
D G + F P+ F + +++M N+GP +NGSQFFIT K L+
Sbjct: 93 DPTGTGRGGPGYKFADEFHPELQFDKPY----LLAMANAGPGTNGSQFFITVGKTPHLNR 148
Query: 174 EHVVFGKVI--QGMDTVYAIEGGAGTYSGKPRKKVTI 208
H +FG+VI + V AI A + +P V I
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 185
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 22/145 (15%)
Query: 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDI-VR 118
G + I L+ + P+ ++F LC + +F FHR + F+IQGG +R
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAELR 65
Query: 119 GDGKGSD------SIYG----GTFPDE-NFKIKHSHAGVVSMVNSGPDSNGSQFFITTVK 167
K + SI G F DE + ++ H GV+SM N G SN S+FFIT
Sbjct: 66 QPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKS 125
Query: 168 ASWLDGEHVVFGKVIQGMDTVYAIE 192
L+ +H +FG+V+ G+D + E
Sbjct: 126 CEHLNNKHTIFGRVVGGLDVLRQWE 150
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 33/194 (17%)
Query: 47 RVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGE------KGTGASGKPLH---- 96
RVY+D+ + + +GR+ I L+ P VENF L G+ GTG H
Sbjct: 16 RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75
Query: 97 FKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE-------NFKIKHSHAGVVSM 149
++G FH ++ I GDI +G + ++Y DE ++ H G++S+
Sbjct: 76 YEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYC----DEPIPPVFGDYFYPHESKGLLSL 131
Query: 150 VNSGPDSNGSQFFITTVKASW-----------LDGEHVVFGKVIQGMDTVYAIEGGAGTY 198
V D +G++++ +T + LD + VV G+V G+D + I Y
Sbjct: 132 V-PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPY 190
Query: 199 SGKPRKKVTIADSG 212
+G+ +I G
Sbjct: 191 AGRKYPTFSIGKCG 204
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 26/139 (18%)
Query: 59 LGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVR 118
LG + + L+ + P NF LC +G ++ FHR+V F++QGGD
Sbjct: 30 LGDLDVELWARECPLACRNFVQLCL--EG--------YYVNTIFHRVVKDFIVQGGDPTG 79
Query: 119 GDGKGSDSIYGGTFPD--ENFKIKHSHAGVVSMVNSGPDS--------------NGSQFF 162
G+D+ + G D + ++K + G+V + N G S NG+QFF
Sbjct: 80 TGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFF 139
Query: 163 ITTVKASWLDGEHVVFGKV 181
IT +A L+ + +FGKV
Sbjct: 140 ITLARADVLNNAYTLFGKV 158
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 24/161 (14%)
Query: 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRG 119
G IVI + P+TV+NF C + + FHR+++GF+IQGG
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGF--E 56
Query: 120 DGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLD--GE--- 174
G + + N +K++ + P S +QFFI V +L+ GE
Sbjct: 57 PGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQ 116
Query: 175 ---HVVFGKVIQGMDTVYAIEGGA----GTYSGKPRKKVTI 208
+ VF +V+ GMD V I+G A G + P++ V I
Sbjct: 117 GWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 24/161 (14%)
Query: 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRG 119
G IVI + P+TV+NF C + + FHR+++GF+IQGG
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGF--E 56
Query: 120 DGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLD--GE--- 174
G + + N +K++ + P S +QFFI V +L+ GE
Sbjct: 57 PGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQ 116
Query: 175 ---HVVFGKVIQGMDTVYAIEGGA----GTYSGKPRKKVTI 208
+ VF +V+ GMD V I+G A G + P++ V I
Sbjct: 117 GWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 26/162 (16%)
Query: 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRG 119
G I + L PKTVENF L +KG H+ G FHR+++GF+IQGG G
Sbjct: 13 GVIKLELDEAKAPKTVENF--LNYVKKG--------HYDGTIFHRVINGFMIQGGGFEPG 62
Query: 120 -DGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGE---- 174
K +D+ + N +K+ + + P S +QFFI +L+
Sbjct: 63 LKQKPTDAPIAN---EANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTP 119
Query: 175 ----HVVFGKVIQGMDTVYAIE----GGAGTYSGKPRKKVTI 208
+ VFGKV++G D V I+ G G + P V I
Sbjct: 120 QGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 70/166 (42%), Gaps = 23/166 (13%)
Query: 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRG 119
G I + L Q P +V+NF SG + FHR++ GF+IQGG
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 120 DGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSG-PDSNGSQFFITTVKASWLD-GE--- 174
+ + D + + G ++M + DS SQFFI ++LD G+
Sbjct: 64 MQQKKPNPPIKNEADNGLR---NTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 175 -HVVFGKVIQGMDTVYAIEG----GAGTYSGKPRKKVTIADSGEIP 215
+ VFGKV++GMD I G Y P K V I + +P
Sbjct: 121 GYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP 166
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 70/166 (42%), Gaps = 23/166 (13%)
Query: 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRG 119
G I + L Q P +V+NF SG + FHR++ GF+IQGG
Sbjct: 14 GNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 120 DGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSG-PDSNGSQFFITTVKASWLD-GE--- 174
+ + D + + G ++M + DS SQFFI ++LD G+
Sbjct: 64 MQQKKPNPPIKNEADNGLR---NTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 175 -HVVFGKVIQGMDTVYAIEG----GAGTYSGKPRKKVTIADSGEIP 215
+ VFGKV++GMD I G Y P K V I + +P
Sbjct: 121 GYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVLP 166
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 20/144 (13%)
Query: 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRG 119
G I + L+ P+T NF K H+ G FHR++ GF+IQGG
Sbjct: 9 GTITLKLFADKAPETAANFEQYV----------KDGHYDGTIFHRVIDGFMIQGGGF--E 56
Query: 120 DGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGE----- 174
G S + N + + + P S +QFFI ++LD
Sbjct: 57 PGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFINVKDNAFLDHTAPTAH 116
Query: 175 ---HVVFGKVIQGMDTVYAIEGGA 195
+ VFG+V++G D V I+ A
Sbjct: 117 GWGYAVFGEVVEGTDVVDRIKSVA 140
>pdb|2YB5|A Chain A, Structure Of The Fusidic Acid Resistance Protein Fusc
pdb|2YB5|F Chain F, Structure Of The Fusidic Acid Resistance Protein Fusc
Length = 215
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
Query: 65 GLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDG 121
G+YG++ P V+ F +C E T F K H SG + GD + D
Sbjct: 144 GIYGEISPNKVKGFCKICNQESDTSL------FLNKTKHNKSSGTYTKKGDYICYDS 194
>pdb|1H14|A Chain A, Structure Of A Cold-Adapted Family 8 Xylanase
Length = 405
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 137 FKIKHSHAGVVSMVNSGPDSNGSQFF---ITTVKASWLD-GEHVVFGKVIQGMDTV 188
+K+K + G V V+ GP NG ++F + A W + GE + I ++T+
Sbjct: 124 WKLKLNQNGFVYKVDEGPAPNGEEYFAFALLNASARWGNSGEFNYYNDAITMLNTI 179
>pdb|2PRX|A Chain A, Crystal Structure Of Thioesterase Superfamily Protein
(Zp_00837258.1) From Shewanella Loihica Pv-4 At 1.65 A
Resolution
pdb|2PRX|B Chain B, Crystal Structure Of Thioesterase Superfamily Protein
(Zp_00837258.1) From Shewanella Loihica Pv-4 At 1.65 A
Resolution
Length = 160
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 96 HFKGKPFHRIVSGFVIQG--GDIVRGDGKGSDS 126
HF KPFH + GFV G ++ G GS S
Sbjct: 43 HFXPKPFHTAIPGFVYGGLIASLIDCHGTGSAS 75
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 132 FPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGE 174
PD+N + + GV+S+V +G D + V+A+ L GE
Sbjct: 157 LPDKNMFTINRNTGVISVVTTGLDRESFPTYTLVVQAADLQGE 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.140 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,012,654
Number of Sequences: 62578
Number of extensions: 331895
Number of successful extensions: 863
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 84
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)