Query 027477
Match_columns 223
No_of_seqs 167 out of 1442
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 10:30:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0880 Peptidyl-prolyl cis-tr 100.0 4.9E-59 1.1E-63 369.6 18.3 180 34-220 28-208 (217)
2 KOG0546 HSP90 co-chaperone CPR 100.0 9E-58 1.9E-62 392.2 16.2 174 44-217 7-181 (372)
3 KOG0879 U-snRNP-associated cyc 100.0 7.6E-51 1.6E-55 305.1 13.3 170 43-214 8-177 (177)
4 PTZ00221 cyclophilin; Provisio 100.0 4.3E-48 9.3E-53 324.4 21.6 177 41-221 48-226 (249)
5 PTZ00060 cyclophilin; Provisio 100.0 5.8E-48 1.3E-52 313.0 20.5 170 44-215 14-183 (183)
6 cd01926 cyclophilin_ABH_like c 100.0 1.1E-47 2.5E-52 306.6 19.9 164 46-212 1-164 (164)
7 PLN03149 peptidyl-prolyl isome 100.0 4.5E-47 9.8E-52 308.3 18.7 168 45-214 18-186 (186)
8 cd01923 cyclophilin_RING cyclo 100.0 8.8E-46 1.9E-50 294.2 19.2 154 56-220 5-159 (159)
9 KOG0111 Cyclophilin-type pepti 100.0 3.6E-47 7.8E-52 306.7 10.3 165 43-215 134-298 (298)
10 cd01921 cyclophilin_RRM cyclop 100.0 9.3E-46 2E-50 296.1 18.2 155 56-221 3-166 (166)
11 KOG0881 Cyclophilin type pepti 100.0 1.5E-46 3.2E-51 278.8 8.4 147 56-213 15-162 (164)
12 COG0652 PpiB Peptidyl-prolyl c 100.0 4.9E-45 1.1E-49 286.5 15.9 147 55-214 4-157 (158)
13 cd01927 cyclophilin_WD40 cyclo 100.0 2.4E-44 5.3E-49 282.7 16.7 144 56-210 3-147 (148)
14 cd01928 Cyclophilin_PPIL3_like 100.0 3.3E-44 7.1E-49 283.4 16.8 146 56-212 6-152 (153)
15 cd01925 cyclophilin_CeCYP16-li 100.0 3.2E-43 6.9E-48 282.6 18.4 164 42-221 2-167 (171)
16 PRK10903 peptidyl-prolyl cis-t 100.0 7.7E-43 1.7E-47 284.2 20.3 147 56-215 34-190 (190)
17 cd01922 cyclophilin_SpCYP2_lik 100.0 2.1E-43 4.6E-48 276.7 16.3 143 56-210 3-146 (146)
18 KOG0883 Cyclophilin type, U bo 100.0 9.2E-43 2E-47 300.3 11.9 166 43-222 273-439 (518)
19 KOG0882 Cyclophilin-related pe 100.0 7.7E-42 1.7E-46 299.5 11.5 150 53-213 407-557 (558)
20 PRK10791 peptidyl-prolyl cis-t 100.0 2.2E-40 4.8E-45 264.2 16.9 146 56-214 5-163 (164)
21 KOG0884 Similar to cyclophilin 100.0 1.7E-40 3.7E-45 245.2 11.0 152 56-218 6-159 (161)
22 cd01920 cyclophilin_EcCYP_like 100.0 1.1E-39 2.4E-44 258.2 16.5 143 56-211 3-155 (155)
23 KOG0865 Cyclophilin type pepti 100.0 3.4E-40 7.4E-45 261.0 9.9 163 44-214 2-167 (167)
24 PF00160 Pro_isomerase: Cyclop 100.0 2.7E-38 5.9E-43 249.9 16.8 151 49-213 1-155 (155)
25 cd00317 cyclophilin cyclophili 100.0 2.7E-38 5.9E-43 247.6 16.4 143 56-210 3-146 (146)
26 KOG0415 Predicted peptidyl pro 100.0 2E-38 4.3E-43 270.8 12.6 157 56-223 6-171 (479)
27 cd01924 cyclophilin_TLP40_like 100.0 4.1E-37 8.9E-42 247.9 14.9 127 56-192 3-163 (176)
28 KOG0885 Peptidyl-prolyl cis-tr 100.0 1.8E-37 3.8E-42 266.5 11.7 166 40-221 7-174 (439)
29 KOG0882 Cyclophilin-related pe 97.6 9.1E-05 2E-09 66.8 5.1 143 61-214 113-262 (558)
30 TIGR03268 methan_mark_3 putati 96.9 0.006 1.3E-07 56.0 8.7 102 60-192 201-302 (503)
31 PRK00969 hypothetical protein; 96.8 0.0053 1.1E-07 56.5 8.2 102 60-192 204-305 (508)
32 TIGR03268 methan_mark_3 putati 96.6 0.012 2.7E-07 54.0 8.9 109 61-192 376-494 (503)
33 COG4070 Predicted peptidyl-pro 96.4 0.01 2.2E-07 53.0 6.5 103 59-192 202-304 (512)
34 PRK00969 hypothetical protein; 96.1 0.035 7.6E-07 51.2 8.8 108 61-192 379-496 (508)
35 COG4070 Predicted peptidyl-pro 93.5 0.19 4E-06 45.2 5.8 23 61-83 377-399 (512)
36 PF12903 DUF3830: Protein of u 90.9 0.98 2.1E-05 35.3 6.4 106 60-192 8-129 (147)
37 PF07172 GRP: Glycine rich pro 76.5 2.1 4.5E-05 31.0 2.1 7 13-19 6-12 (95)
38 COG5510 Predicted small secret 62.7 12 0.00025 23.0 2.9 23 8-30 2-24 (44)
39 COG5429 Uncharacterized secret 53.2 28 0.0006 29.5 4.6 24 63-86 44-71 (261)
40 KOG1545 Voltage-gated shaker-l 44.4 49 0.0011 30.0 5.1 65 5-75 354-418 (507)
41 COG3017 LolB Outer membrane li 43.8 26 0.00056 28.9 3.1 25 8-32 3-27 (206)
42 PF04126 Cyclophil_like: Cyclo 42.4 30 0.00066 25.8 3.1 46 142-192 60-112 (120)
43 COG4594 FecB ABC-type Fe3+-cit 40.3 44 0.00096 28.8 4.0 23 10-32 4-26 (310)
44 PF15284 PAGK: Phage-encoded v 35.7 44 0.00096 22.0 2.6 6 24-29 16-21 (61)
45 PF05984 Cytomega_UL20A: Cytom 35.7 42 0.00091 23.7 2.6 9 23-31 14-22 (100)
46 PF06138 Chordopox_E11: Chordo 34.1 2.1E+02 0.0046 21.8 7.2 44 56-108 9-61 (130)
47 PRK09973 putative outer membra 32.0 44 0.00096 23.6 2.3 24 9-32 1-24 (85)
48 PF11119 DUF2633: Protein of u 31.4 76 0.0016 20.8 3.2 22 1-22 1-23 (59)
49 PF10731 Anophelin: Thrombin i 28.9 51 0.0011 21.7 2.0 21 12-32 4-24 (65)
50 PF05913 DUF871: Bacterial pro 26.1 42 0.00091 30.2 1.7 49 143-192 299-348 (357)
51 PRK15396 murein lipoprotein; P 25.7 73 0.0016 22.1 2.5 21 11-31 4-24 (78)
52 PRK11548 outer membrane biogen 23.6 53 0.0012 24.2 1.6 13 18-30 10-22 (113)
53 KOG4088 Translocon-associated 23.6 2.1E+02 0.0046 22.3 4.9 17 56-72 41-57 (167)
54 TIGR01098 3A0109s03R phosphate 23.2 1.6E+02 0.0036 23.9 4.8 16 60-75 32-47 (254)
55 PF11314 DUF3117: Protein of u 22.7 27 0.00058 21.9 -0.1 25 47-73 18-42 (51)
56 PRK10894 lipopolysaccharide tr 22.4 1.4E+02 0.003 23.8 4.0 6 59-64 51-56 (180)
57 PRK10081 entericidin B membran 22.2 1.4E+02 0.003 18.7 3.0 20 9-28 2-22 (48)
58 PRK09810 entericidin A; Provis 21.8 1E+02 0.0022 18.7 2.3 8 9-16 2-9 (41)
59 PF09889 DUF2116: Uncharacteri 21.8 1.1E+02 0.0024 20.0 2.6 18 4-21 31-48 (59)
60 TIGR03562 osmo_induc_OsmC pero 21.7 3E+02 0.0066 20.8 5.6 25 70-108 105-129 (135)
61 cd02962 TMX2 TMX2 family; comp 20.1 27 0.00059 27.3 -0.6 24 60-83 48-74 (152)
No 1
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-59 Score=369.59 Aligned_cols=180 Identities=58% Similarity=1.017 Sum_probs=170.4
Q ss_pred hhhcccccccccceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhh-CCCCCCCCCCcccccCCceeEeeeCcEEE
Q 027477 34 EEEKEEDVFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCT-GEKGTGASGKPLHFKGKPFHRIVSGFVIQ 112 (223)
Q Consensus 34 ~~~~~~~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~-~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq 112 (223)
...+..+.|++|++|||||.+.+...|||+|+||+..+|+||+||.+||. +.++++ |.+++||||+||||||
T Consensus 28 ~~~~~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQ 100 (217)
T KOG0880|consen 28 SDKKYEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQ 100 (217)
T ss_pred cccccCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceee
Confidence 34667888999999999999999999999999999999999999999999 666664 9999999999999999
Q ss_pred ecccccCCCCCCCCCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHh
Q 027477 113 GGDIVRGDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE 192 (223)
Q Consensus 113 ~Gd~~~~~~~~~~~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~ 192 (223)
|||.+.+++.++.++||+.|+||++.++|+++|.|||||.||++||||||||+...+|||++|+|||+|++|||+|.+|+
T Consensus 101 GGd~t~g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie 180 (217)
T KOG0880|consen 101 GGDFTKGDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIE 180 (217)
T ss_pred cCccccCCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcceEEeeeeeecCCCCC
Q 027477 193 GGAGTYSGKPRKKVTIADSGEIPKNKWD 220 (223)
Q Consensus 193 ~~~~~~~~~P~~~i~I~~cg~l~~~~~~ 220 (223)
...++.+++|.++++|.+||.|+....+
T Consensus 181 ~~~TD~~dkP~e~v~I~~~g~l~~~~~~ 208 (217)
T KOG0880|consen 181 NVKTDERDKPLEDVVIANCGELPVEYLE 208 (217)
T ss_pred hcccCCCCCccccEEEeecCcccccchh
Confidence 7788899999999999999999876543
No 2
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-58 Score=392.15 Aligned_cols=174 Identities=54% Similarity=0.945 Sum_probs=166.7
Q ss_pred ccceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCC-CCCCcccccCCceeEeeeCcEEEecccccCCCC
Q 027477 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTG-ASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGK 122 (223)
Q Consensus 44 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~-~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~ 122 (223)
..++|||||.|++.+.|||+||||.|.||+||+||..||+|..|.+ .++++++|+|+.||||+++|||||||+..++|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 4689999999999999999999999999999999999999999853 579999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCC
Q 027477 123 GSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 202 (223)
Q Consensus 123 ~~~~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P 202 (223)
|+.||||..|+||+|.++|+++++|||||.|||+||||||||+.++|+|||+|+|||+||+|++||+.|+....+..++|
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP 166 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP 166 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995556677799
Q ss_pred CcceEEeeeeeecCC
Q 027477 203 RKKVTIADSGEIPKN 217 (223)
Q Consensus 203 ~~~i~I~~cg~l~~~ 217 (223)
..+|+|.+||+|...
T Consensus 167 ~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 167 LADVVISDCGELVKK 181 (372)
T ss_pred ccceEeccccccccc
Confidence 999999999999877
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-51 Score=305.05 Aligned_cols=170 Identities=49% Similarity=0.882 Sum_probs=160.5
Q ss_pred cccceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCC
Q 027477 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGK 122 (223)
Q Consensus 43 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~ 122 (223)
+..+.||||+++++.++|||.||||.|.+|+|++||.+.|+++. -..+++.-|+++.||||+++|||||||..+++|+
T Consensus 8 ~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~--r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDGt 85 (177)
T KOG0879|consen 8 PNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEY--RKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDGT 85 (177)
T ss_pred CCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhccccc--ccCCccccccccchHHHhhhheeccCceecCCCc
Confidence 44678999999999999999999999999999999999999873 3567888899999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCC
Q 027477 123 GSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 202 (223)
Q Consensus 123 ~~~~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P 202 (223)
|..++|+.+|+||++.++|+.+|+|||||+++++||.|||||..+..+||++|+|||+|++|+.++.+|+....-.+++|
T Consensus 86 G~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkP 165 (177)
T KOG0879|consen 86 GVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKP 165 (177)
T ss_pred eEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995555589999
Q ss_pred CcceEEeeeeee
Q 027477 203 RKKVTIADSGEI 214 (223)
Q Consensus 203 ~~~i~I~~cg~l 214 (223)
+-+|.|..||++
T Consensus 166 Kl~v~i~qCGem 177 (177)
T KOG0879|consen 166 KLPVVIVQCGEM 177 (177)
T ss_pred CCcEEEeecccC
Confidence 999999999974
No 4
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=4.3e-48 Score=324.39 Aligned_cols=177 Identities=32% Similarity=0.480 Sum_probs=158.6
Q ss_pred cccccceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCC-CCCcccccCCceeEeeeC-cEEEeccccc
Q 027477 41 VFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGA-SGKPLHFKGKPFHRIVSG-FVIQGGDIVR 118 (223)
Q Consensus 41 ~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~-~~~~~~Y~g~~f~ri~~~-~~iq~Gd~~~ 118 (223)
.+..+++||||+.+++.+.|+|+||||.+.||+||+||++||++..+.+. .+++..|+++.||||+++ ++||+||+..
T Consensus 48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~ 127 (249)
T PTZ00221 48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS 127 (249)
T ss_pred cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence 45678899999999999999999999999999999999999998765432 455667999999999986 8999999752
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCC
Q 027477 119 GDGKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTY 198 (223)
Q Consensus 119 ~~~~~~~~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~ 198 (223)
.+.+++|..|++|++.++|+++|+|||++.++++++||||||+.++|+||++|+|||+|++||+||++|++...+.
T Consensus 128 ----~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~ 203 (249)
T PTZ00221 128 ----FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDD 203 (249)
T ss_pred ----CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCC
Confidence 2446678899999999999999999999999999999999999999999999999999999999999999555667
Q ss_pred CCCCCcceEEeeeeeecCCCCCc
Q 027477 199 SGKPRKKVTIADSGEIPKNKWDE 221 (223)
Q Consensus 199 ~~~P~~~i~I~~cg~l~~~~~~~ 221 (223)
+++|.++|+|.+||++.++.+.+
T Consensus 204 ~grP~~~V~I~~Cgvl~~~~p~~ 226 (249)
T PTZ00221 204 VGRPLLPVTVSFCGALTGEKPPG 226 (249)
T ss_pred CCCCCCCeEEEECeEecCCCCCc
Confidence 89999999999999998887654
No 5
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=5.8e-48 Score=313.02 Aligned_cols=170 Identities=56% Similarity=1.001 Sum_probs=155.3
Q ss_pred ccceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCC
Q 027477 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKG 123 (223)
Q Consensus 44 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~ 123 (223)
.+++||||+++++++.|+|+||||.+.||++|+||++||++...+ .+++..+|+++.||||+|+++||+||+..+++.+
T Consensus 14 ~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~-~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~ 92 (183)
T PTZ00060 14 KRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVG-SSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTG 92 (183)
T ss_pred CCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCccc-ccCcccccCCeEEEEEcCCCeEEeCCccCCCCCC
Confidence 367899999999999999999999999999999999999865432 2345568999999999999999999987677888
Q ss_pred CCCCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCC
Q 027477 124 SDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPR 203 (223)
Q Consensus 124 ~~~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~ 203 (223)
+.++|+..+++|...++|+.+|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|+ ..++.+++|.
T Consensus 93 g~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~-~~~~~~~~P~ 171 (183)
T PTZ00060 93 GESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAME-KEGTQSGYPK 171 (183)
T ss_pred CCcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHH-ccCCCCCCCc
Confidence 888899899999888999999999999999999999999999999999999999999999999999999 6677789999
Q ss_pred cceEEeeeeeec
Q 027477 204 KKVTIADSGEIP 215 (223)
Q Consensus 204 ~~i~I~~cg~l~ 215 (223)
++|+|.+||+|.
T Consensus 172 ~~v~I~~cg~~~ 183 (183)
T PTZ00060 172 KPVVVTDCGELQ 183 (183)
T ss_pred CCeEEEEeEEcC
Confidence 999999999974
No 6
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=1.1e-47 Score=306.61 Aligned_cols=164 Identities=61% Similarity=1.107 Sum_probs=149.5
Q ss_pred ceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCC
Q 027477 46 HRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSD 125 (223)
Q Consensus 46 ~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~ 125 (223)
++||||+.+++++.|+|+||||++.||++|+||++||++.++.+. +..+|+++.||||+|+|+||+||+..+++.++.
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~ 78 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK 78 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence 479999999999999999999999999999999999987544321 334799999999999999999998767788888
Q ss_pred CCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCcc
Q 027477 126 SIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKK 205 (223)
Q Consensus 126 ~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~~ 205 (223)
++|+..+++|...+.|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|++...+ +++|.++
T Consensus 79 ~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~~P~~~ 157 (164)
T cd01926 79 SIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NGKPKKK 157 (164)
T ss_pred cccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CCCCcCC
Confidence 899999999988899999999999999999999999999999999999999999999999999999954444 8999999
Q ss_pred eEEeeee
Q 027477 206 VTIADSG 212 (223)
Q Consensus 206 i~I~~cg 212 (223)
|+|.+||
T Consensus 158 i~I~~cG 164 (164)
T cd01926 158 VVIADCG 164 (164)
T ss_pred eEEEECC
Confidence 9999998
No 7
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=4.5e-47 Score=308.29 Aligned_cols=168 Identities=48% Similarity=0.867 Sum_probs=152.1
Q ss_pred cceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCC
Q 027477 45 THRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGS 124 (223)
Q Consensus 45 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~ 124 (223)
.++||||+.+++++.|+|+||||.+.||++|+||++||+++.. ..+....|+++.||||+++|+||+||+..+++.++
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~--~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~ 95 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFR--KAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC 95 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhcc--ccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCc
Confidence 4579999999999999999999999999999999999987531 12222359999999999999999999877788888
Q ss_pred CCCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEE-eCHHHHHHHhcCCCCCCCCCC
Q 027477 125 DSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI-QGMDTVYAIEGGAGTYSGKPR 203 (223)
Q Consensus 125 ~~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi-~G~~vl~~I~~~~~~~~~~P~ 203 (223)
.++|+..+++|.+.+.|+++|+|||+++++++++|||||++++.|+||++|+|||+|+ +||+||++|++...+.+++|.
T Consensus 96 ~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~ 175 (186)
T PLN03149 96 VSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPK 175 (186)
T ss_pred ccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCc
Confidence 8899999999988899999999999999999999999999999999999999999999 799999999966665889999
Q ss_pred cceEEeeeeee
Q 027477 204 KKVTIADSGEI 214 (223)
Q Consensus 204 ~~i~I~~cg~l 214 (223)
++|+|.+||++
T Consensus 176 ~~i~I~~cG~~ 186 (186)
T PLN03149 176 LACVISECGEM 186 (186)
T ss_pred CCeEEEeCEeC
Confidence 99999999985
No 8
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=8.8e-46 Score=294.20 Aligned_cols=154 Identities=39% Similarity=0.691 Sum_probs=143.6
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCC
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE 135 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 135 (223)
.|+.|+|+||||++.||++|+||++||+.+ +|+++.||||+|+++||+||+. +++.++.++|+..+++|
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E 73 (159)
T cd01923 5 HTNKGDLNLELHCDKAPKACENFIKLCKKG----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDE 73 (159)
T ss_pred EEccccEEEEEeCCCChHHHHHHHHHHhcC----------ccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcc
Confidence 478999999999999999999999999987 8999999999999999999985 67788888999999998
Q ss_pred Cc-ccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCcceEEeeeeee
Q 027477 136 NF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGEI 214 (223)
Q Consensus 136 ~~-~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~l 214 (223)
.. .++|+++|+|+|+++++++++|||||++++.|+||++|+|||||++|||+|++|+....+.+++|+++|+|.+|+++
T Consensus 74 ~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~ 153 (159)
T cd01923 74 FKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVF 153 (159)
T ss_pred cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEE
Confidence 54 67898999999999999999999999999999999999999999999999999996666678999999999999999
Q ss_pred cCCCCC
Q 027477 215 PKNKWD 220 (223)
Q Consensus 215 ~~~~~~ 220 (223)
.+||++
T Consensus 154 ~dpf~~ 159 (159)
T cd01923 154 VDPFEE 159 (159)
T ss_pred eCCCCC
Confidence 999975
No 9
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-47 Score=306.71 Aligned_cols=165 Identities=55% Similarity=0.966 Sum_probs=160.2
Q ss_pred cccceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCC
Q 027477 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGK 122 (223)
Q Consensus 43 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~ 122 (223)
..+++||+|+.|.+...|||+++|..+..|+|++||..||++..|+| |+|++||||||.||+||||+++++|+
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ngt 206 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNGT 206 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCCC
Confidence 34568999999999999999999999999999999999999999996 99999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCC
Q 027477 123 GSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKP 202 (223)
Q Consensus 123 ~~~~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P 202 (223)
|+.++||..|.||++.++|..+|+|||||+++|+|||||||++....|||++|+|||.|++||+|+.+++ ..+++.++|
T Consensus 207 ggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e-~qgsksgkp 285 (298)
T KOG0111|consen 207 GGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVE-QQGSKSGKP 285 (298)
T ss_pred CCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHH-hccCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CcceEEeeeeeec
Q 027477 203 RKKVTIADSGEIP 215 (223)
Q Consensus 203 ~~~i~I~~cg~l~ 215 (223)
.+.|.|.+||++.
T Consensus 286 ~qkv~i~~cge~~ 298 (298)
T KOG0111|consen 286 QQKVKIVECGEIE 298 (298)
T ss_pred ceEEEEEeccccC
Confidence 9999999999873
No 10
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=9.3e-46 Score=296.07 Aligned_cols=155 Identities=37% Similarity=0.590 Sum_probs=140.0
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCC------
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYG------ 129 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~------ 129 (223)
+|+.|+|+||||++.||++|+||++||+.+ +|+++.||||+++|+|||||+. +++.++.++++
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~ 71 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLCKLK----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQ 71 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHHhcC----------CcCCCEEEEEeCCceEEECCcC-CCCCCCccccccccccc
Confidence 578999999999999999999999999987 8999999999999999999985 56666666654
Q ss_pred -CCCCCCCc-ccccCCCceEEEeccCCCCCcceEEEEcCC-CCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCcce
Q 027477 130 -GTFPDENF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVK-ASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKV 206 (223)
Q Consensus 130 -~~~~~e~~-~~~h~~~G~lsma~~~~~~~~sqFfItl~~-~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i 206 (223)
..+++|.. .++|+.+|+|+||+.++++++|||||++++ .|+||++|+|||||++|||||++|+....+.+++|.++|
T Consensus 72 ~~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i 151 (166)
T cd01921 72 ARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDI 151 (166)
T ss_pred CcccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCe
Confidence 24666654 678989999999999999999999999975 799999999999999999999999977677889999999
Q ss_pred EEeeeeeecCCCCCc
Q 027477 207 TIADSGEIPKNKWDE 221 (223)
Q Consensus 207 ~I~~cg~l~~~~~~~ 221 (223)
+|.+|+++.+||+||
T Consensus 152 ~I~~~~i~~~pf~~~ 166 (166)
T cd01921 152 RIKHTHILDDPFPDP 166 (166)
T ss_pred EEEEEEEECCCCCCC
Confidence 999999999999986
No 11
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=278.82 Aligned_cols=147 Identities=42% Similarity=0.781 Sum_probs=139.2
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCC
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE 135 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 135 (223)
+|++|.|++|||-+.||+||+||.+|++.+ ||+|+.||||+++|+|||||++ ++|.|+.++||..|+||
T Consensus 15 eTsmG~i~~ElY~kHaP~TC~NF~eLarrg----------YYn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~kF~DE 83 (164)
T KOG0881|consen 15 ETSMGKITLELYWKHAPRTCQNFAELARRG----------YYNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDKFEDE 83 (164)
T ss_pred eecccceehhhhhhcCcHHHHHHHHHHhcc----------cccceeeeehhhhheeecCCCC-CCCCCccccccchhhhh
Confidence 577999999999999999999999999988 8999999999999999999995 89999999999999999
Q ss_pred Cc-ccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCcceEEeeeee
Q 027477 136 NF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 213 (223)
Q Consensus 136 ~~-~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~ 213 (223)
.. .++|..+|.|||||.+|++|||||||||++.+|||++|++||||+.||+|+.++....++.++||..+++|.+.-.
T Consensus 84 i~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~~ 162 (164)
T KOG0881|consen 84 IHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAYP 162 (164)
T ss_pred hhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeeec
Confidence 66 6889999999999999999999999999999999999999999999999999999667778999999999988654
No 12
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-45 Score=286.47 Aligned_cols=147 Identities=44% Similarity=0.750 Sum_probs=131.5
Q ss_pred CceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCC
Q 027477 55 EEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPD 134 (223)
Q Consensus 55 ~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~ 134 (223)
.+|+.|+|+|+||++.||+||+||++||+.+ +|+|+.||||+++|||||||+..+++.+++ +.++++
T Consensus 4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~ 70 (158)
T COG0652 4 LETNKGDITIELYPDKAPKTVANFLQLVKEG----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKD 70 (158)
T ss_pred eeccCCCEEEEECCCcCcHHHHHHHHHHHcC----------CCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcc
Confidence 3688999999999999999999999999977 899999999999999999999877677776 378999
Q ss_pred CCcccccCC--CceEEEeccC-CCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCC----CCCCCcceE
Q 027477 135 ENFKIKHSH--AGVVSMVNSG-PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTY----SGKPRKKVT 207 (223)
Q Consensus 135 e~~~~~h~~--~G~lsma~~~-~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~----~~~P~~~i~ 207 (223)
|++...|++ +|+|||||.+ |++++|||||++.+.|+||++|+|||+|++|||+|++|+...... .+.|..+++
T Consensus 71 E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~ 150 (158)
T COG0652 71 ENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVK 150 (158)
T ss_pred cccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeE
Confidence 998888877 9999999998 999999999999999999999999999999999999999544442 346778888
Q ss_pred Eeeeeee
Q 027477 208 IADSGEI 214 (223)
Q Consensus 208 I~~cg~l 214 (223)
|.+..++
T Consensus 151 i~~~~~~ 157 (158)
T COG0652 151 ILSVKIV 157 (158)
T ss_pred Eeeeeee
Confidence 8887764
No 13
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=2.4e-44 Score=282.75 Aligned_cols=144 Identities=44% Similarity=0.770 Sum_probs=134.4
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCC
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE 135 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 135 (223)
+|+.|+|+||||++.||++|+||++||+++ +|+++.||||+|+|++|+||+. +++.++.++|+..+++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e 71 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHARNG----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDE 71 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHhhcC----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccc
Confidence 578999999999999999999999999988 8999999999999999999984 67788888899899999
Q ss_pred Cc-ccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCcceEEee
Q 027477 136 NF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 210 (223)
Q Consensus 136 ~~-~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 210 (223)
.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|++...+++++|.++|+|.+
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~ 147 (148)
T cd01927 72 FSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN 147 (148)
T ss_pred cccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence 76 7889989999999999999999999999999999999999999999999999999666667899999999986
No 14
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=3.3e-44 Score=283.44 Aligned_cols=146 Identities=45% Similarity=0.739 Sum_probs=135.8
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCC
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE 135 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 135 (223)
+|+.|+|+||||++.||++|+||++||+++ +|+++.||||+++|++|+||+. +++.++.++|+..+++|
T Consensus 6 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e 74 (153)
T cd01928 6 HTNLGDIKIELFCDDCPKACENFLALCASG----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDE 74 (153)
T ss_pred EEccccEEEEEcCCCCcHHHHHHHHHHhcC----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccc
Confidence 478999999999999999999999999988 8999999999999999999984 66777888889999999
Q ss_pred Cc-ccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCcceEEeeee
Q 027477 136 NF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSG 212 (223)
Q Consensus 136 ~~-~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg 212 (223)
.. .++|+.+|+|+|+++++++++|||||++++.|+||++|+|||||++|||+|++|++...+++++|.++|+|.+|.
T Consensus 75 ~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~ 152 (153)
T cd01928 75 FRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT 152 (153)
T ss_pred cccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence 76 578889999999999999999999999999999999999999999999999999966666889999999999984
No 15
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=3.2e-43 Score=282.55 Aligned_cols=164 Identities=36% Similarity=0.574 Sum_probs=147.7
Q ss_pred ccccceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCC
Q 027477 42 FEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDG 121 (223)
Q Consensus 42 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~ 121 (223)
|+.+.+|.+ .|+.|+|+||||++.||++|+||++||+.+ +|+++.||||+++|+|||||+. +++
T Consensus 2 ~~~~~~v~i-----~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g 65 (171)
T cd01925 2 PPTTGKVIL-----KTTAGDIDIELWSKEAPKACRNFIQLCLEG----------YYDNTIFHRVVPGFIIQGGDPT-GTG 65 (171)
T ss_pred CCcccEEEE-----EEccccEEEEEeCCCChHHHHHHHHHHhcC----------CCCCCEEEEEcCCcEEEccccC-CCC
Confidence 344556665 467999999999999999999999999988 8999999999999999999985 677
Q ss_pred CCCCCCCCCCCCCCCc-ccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEE-eCHHHHHHHhcCCCCCC
Q 027477 122 KGSDSIYGGTFPDENF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI-QGMDTVYAIEGGAGTYS 199 (223)
Q Consensus 122 ~~~~~~~~~~~~~e~~-~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi-~G~~vl~~I~~~~~~~~ 199 (223)
.++.++|+..+++|.. .++|+++|+|+|+++++++++|||||++++.|+||++|+|||+|+ ++++++++|+....+.+
T Consensus 66 ~g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~ 145 (171)
T cd01925 66 TGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKD 145 (171)
T ss_pred ccCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCC
Confidence 8888899999999966 577889999999999999999999999999999999999999999 46888999996677788
Q ss_pred CCCCcceEEeeeeeecCCCCCc
Q 027477 200 GKPRKKVTIADSGEIPKNKWDE 221 (223)
Q Consensus 200 ~~P~~~i~I~~cg~l~~~~~~~ 221 (223)
++|.++|+|.+|+++.++++|-
T Consensus 146 ~~P~~~i~I~~~~i~~~pf~~~ 167 (171)
T cd01925 146 ERPVYPPKITSVEVLENPFDDI 167 (171)
T ss_pred CCcCCCeEEEEEEEEcCCchhh
Confidence 9999999999999999999873
No 16
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=100.00 E-value=7.7e-43 Score=284.24 Aligned_cols=147 Identities=29% Similarity=0.462 Sum_probs=126.9
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCC
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE 135 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 135 (223)
+|+.|+|+||||++.||++|+||++||+.+ +|+|+.||||+|+|+||||++....+ ...++.++++|
T Consensus 34 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~~~~e 100 (190)
T PRK10903 34 TTSAGNIELELNSQKAPVSVKNFVDYVNSG----------FYNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNE 100 (190)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCcccCc
Confidence 467999999999999999999999999987 89999999999999999998753321 12345678888
Q ss_pred CcccccCCCceEEEeccC-CCCCcceEEEEcCCCCCCCC-----CCcEEEEEEeCHHHHHHHhcCCCCC----CCCCCcc
Q 027477 136 NFKIKHSHAGVVSMVNSG-PDSNGSQFFITTVKASWLDG-----EHVVFGKVIQGMDTVYAIEGGAGTY----SGKPRKK 205 (223)
Q Consensus 136 ~~~~~h~~~G~lsma~~~-~~~~~sqFfItl~~~~~ld~-----~~~VFG~Vi~G~~vl~~I~~~~~~~----~~~P~~~ 205 (223)
.....|+.+|+|+|++.+ +++++|||||++++.++||+ +|+|||+|++|||||++|+....+. +++|.++
T Consensus 101 ~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~ 180 (190)
T PRK10903 101 ADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKP 180 (190)
T ss_pred ccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCC
Confidence 665567779999999865 89999999999999999984 8999999999999999999554443 4799999
Q ss_pred eEEeeeeeec
Q 027477 206 VTIADSGEIP 215 (223)
Q Consensus 206 i~I~~cg~l~ 215 (223)
|+|.+|++++
T Consensus 181 v~I~~~~v~~ 190 (190)
T PRK10903 181 VVILSAKVLP 190 (190)
T ss_pred eEEEEEEEeC
Confidence 9999999875
No 17
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=2.1e-43 Score=276.74 Aligned_cols=143 Identities=43% Similarity=0.793 Sum_probs=131.4
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCC
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE 135 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 135 (223)
+|+.|+|+||||.+.||++|+||++||+.+ +|+++.||||+|+|++||||+. +++.++.++|+..+++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e 71 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELAKRG----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDE 71 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccc
Confidence 478999999999999999999999999987 8999999999999999999974 66777788889899998
Q ss_pred C-cccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCcceEEee
Q 027477 136 N-FKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 210 (223)
Q Consensus 136 ~-~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 210 (223)
. ..++|+++|+|+|+++++++++|||||++++.|+||++|+|||||++|||||++|+....+ +++|.++|+|.+
T Consensus 72 ~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P~~~I~I~~ 146 (146)
T cd01922 72 IHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRPIDEVKILK 146 (146)
T ss_pred cccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCcCCCeEEeC
Confidence 5 4688999999999999999999999999999999999999999999999999999944444 889999999964
No 18
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-43 Score=300.31 Aligned_cols=166 Identities=35% Similarity=0.645 Sum_probs=154.2
Q ss_pred cccceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCC
Q 027477 43 EITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGK 122 (223)
Q Consensus 43 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~ 122 (223)
.+..+-|+.+. |+.|.|.|||++|.+|++|+||++||+.+ ||+|+.|||.|++|||||||++ +.|.
T Consensus 273 rvKkkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~g----------YYnnt~FHRsIrnFmiQGGDPT-GTG~ 338 (518)
T KOG0883|consen 273 RVKKKGYVRLV---TNHGPLNLELHCDYAPRACENFITLCKNG----------YYNNTIFHRSIRNFMIQGGDPT-GTGR 338 (518)
T ss_pred cccccceEEEe---ccCCceeeEeecCcchHHHHHHHHHHhcc----------cccchHHHHHHHHHeeeCCCCC-CCCC
Confidence 34445677665 88999999999999999999999999988 8999999999999999999995 9999
Q ss_pred CCCCCCCCCCCCCCc-ccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCC
Q 027477 123 GSDSIYGGTFPDENF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGK 201 (223)
Q Consensus 123 ~~~~~~~~~~~~e~~-~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~ 201 (223)
|++++||.+|.||.. .+.|+.||+|||||+|||+|||||||+...+.+||++|+|||+|+.|+++|.+|+....++.++
T Consensus 339 GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~Dr 418 (518)
T KOG0883|consen 339 GGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDR 418 (518)
T ss_pred CCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCC
Confidence 999999999999965 7899999999999999999999999999999999999999999999999999999666778899
Q ss_pred CCcceEEeeeeeecCCCCCcC
Q 027477 202 PRKKVTIADSGEIPKNKWDEE 222 (223)
Q Consensus 202 P~~~i~I~~cg~l~~~~~~~~ 222 (223)
|+.+|+|.+.-+..+|+.+++
T Consensus 419 P~e~I~i~~~~VFVdPfeEa~ 439 (518)
T KOG0883|consen 419 PKEEIKIEDAIVFVDPFEEAD 439 (518)
T ss_pred cccceEEeeeEEeeCcHHHHH
Confidence 999999999999999998764
No 19
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-42 Score=299.51 Aligned_cols=150 Identities=45% Similarity=0.752 Sum_probs=141.8
Q ss_pred EeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCC
Q 027477 53 DIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTF 132 (223)
Q Consensus 53 ~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~ 132 (223)
+|-.|++|+|.|.||+++||+||+||...|+.| ||+|..||||+++||||+||+. ++|.|++++||..|
T Consensus 407 aiihtt~gdi~~kl~p~ecpktvenf~th~rng----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~df 475 (558)
T KOG0882|consen 407 AIIHTTQGDIHIKLYPEECPKTVENFTTHSRNG----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDF 475 (558)
T ss_pred eEEEecccceEEEecccccchhhhhhhccccCc----------cccCcchHHhhhhheeecCCCC-CCCCCCcccccccc
Confidence 344588999999999999999999999999988 8999999999999999999995 99999999999999
Q ss_pred CCCCc-ccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCcceEEeee
Q 027477 133 PDENF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADS 211 (223)
Q Consensus 133 ~~e~~-~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~c 211 (223)
+||.. .|+|+++-+|||||.|||+||||||||+.+.||||++|+|||||+.||||+++|+...+++.+||.+++.|.+.
T Consensus 476 edefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iini 555 (558)
T KOG0882|consen 476 EDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINI 555 (558)
T ss_pred hhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEE
Confidence 99976 68999999999999999999999999999999999999999999999999999997777899999999999987
Q ss_pred ee
Q 027477 212 GE 213 (223)
Q Consensus 212 g~ 213 (223)
.+
T Consensus 556 sv 557 (558)
T KOG0882|consen 556 SV 557 (558)
T ss_pred ec
Confidence 54
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=100.00 E-value=2.2e-40 Score=264.17 Aligned_cols=146 Identities=31% Similarity=0.526 Sum_probs=123.7
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCC
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE 135 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 135 (223)
+|+.|+|+|+||++.||++|+||++||+.+ ||+++.||||+|+|+|||||...+.+. ..++.++++|
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e 71 (164)
T PRK10791 5 HTNHGDIVIKTFDDKAPETVKNFLDYCREG----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNE 71 (164)
T ss_pred EEccccEEEEEeCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCc
Confidence 578999999999999999999999999988 899999999999999999987543321 2235677777
Q ss_pred CcccccCCCceEEEeccC-CCCCcceEEEEcCCCCCCC-------C-CCcEEEEEEeCHHHHHHHhcCCCCC----CCCC
Q 027477 136 NFKIKHSHAGVVSMVNSG-PDSNGSQFFITTVKASWLD-------G-EHVVFGKVIQGMDTVYAIEGGAGTY----SGKP 202 (223)
Q Consensus 136 ~~~~~h~~~G~lsma~~~-~~~~~sqFfItl~~~~~ld-------~-~~~VFG~Vi~G~~vl~~I~~~~~~~----~~~P 202 (223)
.....++.+|+||||+.+ |++++|||||++.+.++|| + +|+|||+|++|||||++|+....+. +++|
T Consensus 72 ~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P 151 (164)
T PRK10791 72 ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVP 151 (164)
T ss_pred ccccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCc
Confidence 554444579999999875 9999999999999988776 3 7999999999999999999555444 3699
Q ss_pred CcceEEeeeeee
Q 027477 203 RKKVTIADSGEI 214 (223)
Q Consensus 203 ~~~i~I~~cg~l 214 (223)
..+|+|.+|.+.
T Consensus 152 ~~~v~I~~~~i~ 163 (164)
T PRK10791 152 KEDVIIESVTVS 163 (164)
T ss_pred CCCeEEEEEEEe
Confidence 999999999764
No 21
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-40 Score=245.19 Aligned_cols=152 Identities=41% Similarity=0.646 Sum_probs=140.4
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCC
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE 135 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 135 (223)
.|..|+|.||||.+.+|++|+||+.+|... +|+++.|||-+|+|++|+||+. ..|.|+.++||..|+||
T Consensus 6 ht~~gdikiev~~e~tpktce~~l~~~~~~----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede 74 (161)
T KOG0884|consen 6 HTDVGDIKIEVFCERTPKTCENFLALCASD----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDE 74 (161)
T ss_pred eeccCcEEEEEEecCChhHHHHHHHHhhhh----------hccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHH
Confidence 367899999999999999999999999887 8999999999999999999985 78999999999999999
Q ss_pred Cc-ccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCC-CCCCCCcceEEeeeee
Q 027477 136 NF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGT-YSGKPRKKVTIADSGE 213 (223)
Q Consensus 136 ~~-~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~-~~~~P~~~i~I~~cg~ 213 (223)
.. .++|+.||.||||++||++++||||||.+++|+||-+|+|||+|++|+|.||.|+....+ +..||..++.|.+..+
T Consensus 75 ~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti 154 (161)
T KOG0884|consen 75 YSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154 (161)
T ss_pred HHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence 77 588999999999999999999999999999999999999999999999999999955555 4589999999999887
Q ss_pred ecCCC
Q 027477 214 IPKNK 218 (223)
Q Consensus 214 l~~~~ 218 (223)
-..|+
T Consensus 155 hanp~ 159 (161)
T KOG0884|consen 155 HANPF 159 (161)
T ss_pred ecCcC
Confidence 65554
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=1.1e-39 Score=258.17 Aligned_cols=143 Identities=35% Similarity=0.495 Sum_probs=122.5
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCC
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE 135 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 135 (223)
+|+.|+|+||||++.||++|+||++||+.+ +|+++.||||+|+|+||+||+....+. ..++..+++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e 69 (155)
T cd01920 3 QTSLGDIVVELYDDKAPITVENFLAYVRKG----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNE 69 (155)
T ss_pred EecceeEEEEEeCCCCcHHHHHHHHHHhcC----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCc
Confidence 478999999999999999999999999987 899999999999999999998643322 2335567777
Q ss_pred CcccccCCCceEEEeccC-CCCCcceEEEEcCCCCCCCC-----CCcEEEEEEeCHHHHHHHhcCCCCC----CCCCCcc
Q 027477 136 NFKIKHSHAGVVSMVNSG-PDSNGSQFFITTVKASWLDG-----EHVVFGKVIQGMDTVYAIEGGAGTY----SGKPRKK 205 (223)
Q Consensus 136 ~~~~~h~~~G~lsma~~~-~~~~~sqFfItl~~~~~ld~-----~~~VFG~Vi~G~~vl~~I~~~~~~~----~~~P~~~ 205 (223)
.....|+.+|+||||+++ +++++|||||++++.++||+ +|+|||+|++|||||++|+....+. +++|..+
T Consensus 70 ~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~ 149 (155)
T cd01920 70 AGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQD 149 (155)
T ss_pred ccccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCC
Confidence 665566789999999965 89999999999999999995 7999999999999999999555544 3689999
Q ss_pred eEEeee
Q 027477 206 VTIADS 211 (223)
Q Consensus 206 i~I~~c 211 (223)
|+|.++
T Consensus 150 v~i~~~ 155 (155)
T cd01920 150 VIIESA 155 (155)
T ss_pred eEEEEC
Confidence 999763
No 23
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-40 Score=260.98 Aligned_cols=163 Identities=56% Similarity=1.011 Sum_probs=155.6
Q ss_pred ccceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEe---eeCcEEEecccccCC
Q 027477 44 ITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRI---VSGFVIQGGDIVRGD 120 (223)
Q Consensus 44 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri---~~~~~iq~Gd~~~~~ 120 (223)
++++||+|++++++++|+++++||.|..|+|++||..||++.++.+ |+++.|||+ +++|++||||.+.++
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hn 74 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHN 74 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccC
Confidence 4678999999999999999999999999999999999999887774 999999993 457999999999999
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCC
Q 027477 121 GKGSDSIYGGTFPDENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSG 200 (223)
Q Consensus 121 ~~~~~~~~~~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~ 200 (223)
++++.++|++.|+||++.++|..+|.|||||.+|++++|||||++....|||++|+|||+|.+||+++++++ ..+++++
T Consensus 75 gtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e-~~gs~~g 153 (167)
T KOG0865|consen 75 GTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAME-RFGSRNG 153 (167)
T ss_pred CccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhh-ccCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 7999999
Q ss_pred CCCcceEEeeeeee
Q 027477 201 KPRKKVTIADSGEI 214 (223)
Q Consensus 201 ~P~~~i~I~~cg~l 214 (223)
++.++|.|.+||+|
T Consensus 154 k~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 154 KTSKKITIADCGQL 167 (167)
T ss_pred cccccEEEecCCcC
Confidence 99999999999975
No 24
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=100.00 E-value=2.7e-38 Score=249.88 Aligned_cols=151 Identities=50% Similarity=0.825 Sum_probs=127.5
Q ss_pred EEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCC-CCC
Q 027477 49 YLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGS-DSI 127 (223)
Q Consensus 49 ~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~-~~~ 127 (223)
|++|+.++ .|+|+||||++.||++|+||++||+.+ +|+++.|||++++++||+|++......+. ...
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~ 68 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST 68 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc----------ccCCceeecccccceeeeeeccCCCCccccccc
Confidence 67887543 999999999999999999999999977 89999999999999999999764433111 122
Q ss_pred CCCCCCCCCc-ccccCCCceEEEeccC--CCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCc
Q 027477 128 YGGTFPDENF-KIKHSHAGVVSMVNSG--PDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRK 204 (223)
Q Consensus 128 ~~~~~~~e~~-~~~h~~~G~lsma~~~--~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~ 204 (223)
.+..+++|.. ...++++|+|+|++.+ +++++|||||+|++.++||++|+|||+|++||++|++|+ ...+.. +|.+
T Consensus 69 ~~~~~~~E~~~~~~~~~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~-~~~~~~-~p~~ 146 (155)
T PF00160_consen 69 GGEPIPDEFNPSLLKHRRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIE-AGPTDE-RPKQ 146 (155)
T ss_dssp TBSCBSSSGBTTSSSSSTTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHH-TSBBTT-EBSS
T ss_pred CccccccccccccccccceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHH-CCCCCC-ccCC
Confidence 3446888874 3333479999999975 888999999999999999999999999999999999999 554444 9999
Q ss_pred ceEEeeeee
Q 027477 205 KVTIADSGE 213 (223)
Q Consensus 205 ~i~I~~cg~ 213 (223)
+|+|.+||+
T Consensus 147 ~v~I~~cgv 155 (155)
T PF00160_consen 147 DVTISSCGV 155 (155)
T ss_dssp TEEEEEEEE
T ss_pred CeEEEEeEC
Confidence 999999997
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=100.00 E-value=2.7e-38 Score=247.65 Aligned_cols=143 Identities=55% Similarity=0.912 Sum_probs=128.1
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCC
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDE 135 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e 135 (223)
.|+.|+|+||||++.||++|+||++||+++ +|+++.|||+++++++|+||+....+.+ +.++..+++|
T Consensus 3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E 70 (146)
T cd00317 3 DTTKGRIVIELYGDEAPKTVENFLSLARGG----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDE 70 (146)
T ss_pred EeccCcEEEEEcCCCChHHHHHHHHHHhcC----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCc
Confidence 467899999999999999999999999988 8999999999999999999986443322 3456788888
Q ss_pred Ccccc-cCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCcceEEee
Q 027477 136 NFKIK-HSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIAD 210 (223)
Q Consensus 136 ~~~~~-h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 210 (223)
..... |+++|+|+|++.++++++|||||++++.++||++|+|||+|++||++|++|+....+++++|.++|+|.+
T Consensus 71 ~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~ 146 (146)
T cd00317 71 NFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146 (146)
T ss_pred cccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence 87665 8889999999999999999999999999999999999999999999999999666667999999999974
No 26
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-38 Score=270.80 Aligned_cols=157 Identities=39% Similarity=0.596 Sum_probs=146.0
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCC----
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGT---- 131 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~---- 131 (223)
+|++|+|+|.||.+.+|.+|.||++||+-. ||+.|.||.|.++|.+|+||++ |+|.|+.++|+..
T Consensus 6 eTtlGDlvIDLf~~erP~~clNFLKLCk~K----------YYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q 74 (479)
T KOG0415|consen 6 ETTLGDLVIDLFVKERPRTCLNFLKLCKIK----------YYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQ 74 (479)
T ss_pred EeecccEEeeeecccCcHHHHHHHHHHhHh----------hcccceeeeccccceeecCCCC-CCCCCcceeeeeccccc
Confidence 588999999999999999999999999988 9999999999999999999996 7999999999632
Q ss_pred ---CCCCCc-ccccCCCceEEEeccCCCCCcceEEEEcCCC-CCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCcce
Q 027477 132 ---FPDENF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVKA-SWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKV 206 (223)
Q Consensus 132 ---~~~e~~-~~~h~~~G~lsma~~~~~~~~sqFfItl~~~-~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i 206 (223)
|.+|.. .++|.+.|+|||++.|.+.+||||||||+++ ..||++|+|||+|.+|+|+|.+|+.+..+.+++|.++|
T Consensus 75 ~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdI 154 (479)
T KOG0415|consen 75 ARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDI 154 (479)
T ss_pred chhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccce
Confidence 445543 6899999999999999999999999999976 89999999999999999999999999999999999999
Q ss_pred EEeeeeeecCCCCCcCC
Q 027477 207 TIADSGEIPKNKWDEER 223 (223)
Q Consensus 207 ~I~~cg~l~~~~~~~~~ 223 (223)
+|.+.-+|.+||+||.+
T Consensus 155 RI~HTiiLdDPFddpp~ 171 (479)
T KOG0415|consen 155 RIKHTIILDDPFDDPPD 171 (479)
T ss_pred eeeeeEEecCCCCCchh
Confidence 99999999999999853
No 27
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=100.00 E-value=4.1e-37 Score=247.87 Aligned_cols=127 Identities=33% Similarity=0.531 Sum_probs=108.7
Q ss_pred ceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCC--------------
Q 027477 56 EQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDG-------------- 121 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~-------------- 121 (223)
.|+.|+|+||||++.||+||+||++||+.+ +|+++.||||+++|+|||||+...+.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p 72 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLVERG----------FYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIP 72 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHHHhC----------CcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccc
Confidence 478999999999999999999999999987 89999999999999999999853310
Q ss_pred ------CCCCCCCCCCC-----CCCCcccccCCCceEEEeccC--CCCCcceEEEEcC-------CCCCCCCCCcEEEEE
Q 027477 122 ------KGSDSIYGGTF-----PDENFKIKHSHAGVVSMVNSG--PDSNGSQFFITTV-------KASWLDGEHVVFGKV 181 (223)
Q Consensus 122 ------~~~~~~~~~~~-----~~e~~~~~h~~~G~lsma~~~--~~~~~sqFfItl~-------~~~~ld~~~~VFG~V 181 (223)
..+.+.|+..+ .++...+.|+.+|+||||+++ +++++|||||+++ +.|+||++|+|||+|
T Consensus 73 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~V 152 (176)
T cd01924 73 LEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYV 152 (176)
T ss_pred ceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEE
Confidence 11223444433 244556778889999999987 6999999999998 789999999999999
Q ss_pred EeCHHHHHHHh
Q 027477 182 IQGMDTVYAIE 192 (223)
Q Consensus 182 i~G~~vl~~I~ 192 (223)
++|||||++|+
T Consensus 153 veG~dvl~~I~ 163 (176)
T cd01924 153 TDGLDILRELK 163 (176)
T ss_pred ecCHHHHHhhc
Confidence 99999999998
No 28
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-37 Score=266.48 Aligned_cols=166 Identities=34% Similarity=0.539 Sum_probs=152.3
Q ss_pred ccccccceEEEEEEeCceeeeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccC
Q 027477 40 DVFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRG 119 (223)
Q Consensus 40 ~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~ 119 (223)
..|+.+.+|.+ .|+.|+|.||||+..||++|.||++||..| ||+|+.|||++|+|++||||+ .+
T Consensus 7 ~EP~ttgkvil-----~TT~G~I~iELW~kE~P~acrnFiqKOGeg----------yy~nt~fhrlvp~f~~Qggdp-~~ 70 (439)
T KOG0885|consen 7 LEPPTTGKVIL-----KTTKGDIDIELWAKECPKACRNFIQLCLEG----------YYDNTEFHRLVPGFLVQGGDP-TG 70 (439)
T ss_pred cCCCccceEEE-----EeccCceeeeehhhhhhHHHHHHHHHHHhc----------cccCceeeeeccchhcccCCC-CC
Confidence 34778888877 567999999999999999999999999988 899999999999999999999 48
Q ss_pred CCCCCCCCCCCCCCCCCc-ccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEE-eCHHHHHHHhcCCCC
Q 027477 120 DGKGSDSIYGGTFPDENF-KIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVI-QGMDTVYAIEGGAGT 197 (223)
Q Consensus 120 ~~~~~~~~~~~~~~~e~~-~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi-~G~~vl~~I~~~~~~ 197 (223)
+|+|+.++||.+|.+|.. .++++++|+|+||+.+.+.||||||+||+++|+|+++|++||+|+ +-+-.+-+|.....+
T Consensus 71 ~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eid 150 (439)
T KOG0885|consen 71 TGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEID 150 (439)
T ss_pred CCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccccc
Confidence 999999999999999976 678999999999999999999999999999999999999999999 355667788766677
Q ss_pred CCCCCCcceEEeeeeeecCCCCCc
Q 027477 198 YSGKPRKKVTIADSGEIPKNKWDE 221 (223)
Q Consensus 198 ~~~~P~~~i~I~~cg~l~~~~~~~ 221 (223)
.+.||..+-+|.+|.++-.+|+|.
T Consensus 151 a~~Rp~~p~kI~s~EV~~npFdDI 174 (439)
T KOG0885|consen 151 ADDRPVDPPKIKSVEVLINPFDDI 174 (439)
T ss_pred cccCCCCccceeeeEeecCchhhc
Confidence 899999999999999999999885
No 29
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=9.1e-05 Score=66.77 Aligned_cols=143 Identities=19% Similarity=0.198 Sum_probs=112.1
Q ss_pred eEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCC--CC---CCCC-
Q 027477 61 RIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIY--GG---TFPD- 134 (223)
Q Consensus 61 ~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~--~~---~~~~- 134 (223)
-|.|+++.+-.|.-++-|...|.-. ++++..|.+|.+.+++|.||.......++.--| ++ .+++
T Consensus 113 ~IAVs~~~sg~i~VvD~~~d~~q~~----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~ 182 (558)
T KOG0882|consen 113 LIAVSLFKSGKIFVVDGFGDFCQDG----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT 182 (558)
T ss_pred eEEeecccCCCcEEECCcCCcCccc----------eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence 8999999999999999999999876 789999999999999999987544333332111 11 1332
Q ss_pred -CCcccccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHhcCCCCCCCCCCcceEEeeeee
Q 027477 135 -ENFKIKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIEGGAGTYSGKPRKKVTIADSGE 213 (223)
Q Consensus 135 -e~~~~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cg~ 213 (223)
.++.++|. .-++..........+-+|.+.-...+.+..+..|||++.+|-++++.|.+...+....|+.++.|.++..
T Consensus 183 ~l~~~~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Vel 261 (558)
T KOG0882|consen 183 NLNFELKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVEL 261 (558)
T ss_pred ccccccccc-chhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeeh
Confidence 34566765 5555555555556678899988888999999999999999999999999777778889999999988765
Q ss_pred e
Q 027477 214 I 214 (223)
Q Consensus 214 l 214 (223)
.
T Consensus 262 g 262 (558)
T KOG0882|consen 262 G 262 (558)
T ss_pred h
Confidence 4
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.85 E-value=0.006 Score=56.00 Aligned_cols=102 Identities=26% Similarity=0.391 Sum_probs=65.8
Q ss_pred eeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCCCccc
Q 027477 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI 139 (223)
Q Consensus 60 G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~ 139 (223)
=.+.+||.++ ||.++++|+.+.+.+. + .+.+....|+ . .....+...+.|+...
T Consensus 201 Ty~evE~~~~-~p~s~EH~la~~~~G~----------~---~Vd~~tsTfi-~-----------d~~L~g~~~p~En~~~ 254 (503)
T TIGR03268 201 TYVEVELDPN-APVSVEHFLALMEDGT----------F---RVDYRTSTFI-S-----------DDSLRGLDKPEENIEK 254 (503)
T ss_pred EEEEEEEcCC-CChhHHHHHHHHhCCe----------E---EEeeeecceE-e-----------cccccCccCCccccCc
Confidence 3677887776 5999999999998761 1 1111111111 1 0111133556666544
Q ss_pred ccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHh
Q 027477 140 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE 192 (223)
Q Consensus 140 ~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~ 192 (223)
+ .+|+|++.+.|.+ ....||...+.+. .-.|+|+|+|+.|||+++--+
T Consensus 255 R--~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a~ 302 (503)
T TIGR03268 255 R--RRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIAQ 302 (503)
T ss_pred c--cceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeeccc
Confidence 4 4999999998744 4468898766543 236899999999999987554
No 31
>PRK00969 hypothetical protein; Provisional
Probab=96.83 E-value=0.0053 Score=56.47 Aligned_cols=102 Identities=25% Similarity=0.402 Sum_probs=66.1
Q ss_pred eeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCCCccc
Q 027477 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKI 139 (223)
Q Consensus 60 G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~ 139 (223)
=.+.+||.++ ||.++++|+.+.+.+. + .+.+....|+ . ....-|...+.|++..
T Consensus 204 Ty~eve~~~~-~p~s~EH~la~~~~G~----------f---~Vd~~tstfI-~-----------d~~L~g~~~p~En~~~ 257 (508)
T PRK00969 204 TYVEVELDPG-APKSVEHFLALLEDGT----------F---EVDFETSTFI-A-----------DDRLQGLKIPEENFEP 257 (508)
T ss_pred EEEEEEEcCC-CCchHHHHHHHHhCCe----------E---EEeeeecceE-e-----------eccccCccCCccccCc
Confidence 3677888877 5999999999998761 1 1111111111 1 0111134556666544
Q ss_pred ccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHh
Q 027477 140 KHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE 192 (223)
Q Consensus 140 ~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~ 192 (223)
+ .+|+|++.+.|.+ ...-||.-.+.+. .-.|+|+|+|+.|||+++--+
T Consensus 258 R--~~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a~ 305 (508)
T PRK00969 258 R--RRGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFAK 305 (508)
T ss_pred c--ccceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeeccc
Confidence 4 4999999998744 4468998766543 236899999999999987554
No 32
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=96.61 E-value=0.012 Score=53.99 Aligned_cols=109 Identities=23% Similarity=0.376 Sum_probs=65.9
Q ss_pred eEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCCCcccc
Q 027477 61 RIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 140 (223)
Q Consensus 61 ~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~ 140 (223)
=|.|+||.+.||+++..|.++.--.. ++ ==-..+|-..++..+--|+.. +...+.+|+.+-.
T Consensus 376 vi~IeLydd~AP~s~~yFRk~tGL~~------~~--VG~L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~ 437 (503)
T TIGR03268 376 VIEIELYDDNAPRSVWYFRKFTGLKT------KP--VGRLPVHFAFKEMIMFKGNKE----------LAKGLIPENTPED 437 (503)
T ss_pred EEEEEEcccCCchHHHHHHHhcCCcc------cc--cceeEEEEEeCCeeEeccCch----------hccccCCCCCCCC
Confidence 58899999999999999999863220 00 001345555566433333221 2223445655544
Q ss_pred cCCCceEEEeccC---CCCC------cceEEEEcCCC-CCCCCCCcEEEEEEeCHHHHHHHh
Q 027477 141 HSHAGVVSMVNSG---PDSN------GSQFFITTVKA-SWLDGEHVVFGKVIQGMDTVYAIE 192 (223)
Q Consensus 141 h~~~G~lsma~~~---~~~~------~sqFfItl~~~-~~ld~~~~VFG~Vi~G~~vl~~I~ 192 (223)
-..+|.+++.|.. .+.. ++.| +++ ..+++.+ ++|+|+++++.|.++.
T Consensus 438 ~V~ag~IgvTN~a~k~~G~IGVRl~d~def----GPTGE~F~gTN-IiG~Vv~~~e~Lk~~K 494 (503)
T TIGR03268 438 KVEAGVIGVTNQACKHVGMIGVRLEDSDEF----GPTGEPFSGTN-IIGRVVEGMERLKGLK 494 (503)
T ss_pred ccccceEeeechhhhcCceEEEEccCCccc----CCCCCCccCcc-eEEEecCChhHhcccc
Confidence 5568888887743 1111 2232 344 3566666 5599999999998887
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.01 Score=53.01 Aligned_cols=103 Identities=24% Similarity=0.415 Sum_probs=66.1
Q ss_pred eeeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCCCcc
Q 027477 59 LGRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFK 138 (223)
Q Consensus 59 ~G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~ 138 (223)
.=.+.+||.++. |+++++|++|...|.= ...|.-.+| +. ..+......+.|++.
T Consensus 202 fTy~eve~s~ns-P~saEH~lalmedG~l------ri~~~tntf--------is-----------~~~lq~~~~~~en~d 255 (512)
T COG4070 202 FTYFEVELSRNS-PKSAEHFLALMEDGTL------RIDVTTNTF--------IS-----------DDTLQEEKVPEENFD 255 (512)
T ss_pred EEEEEEEeCCCC-chhHHHHHHHhhcceE------EEEEeccce--------ee-----------ccccccccCChhhhh
Confidence 347888988874 9999999999876510 001111111 11 011113456677766
Q ss_pred cccCCCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEeCHHHHHHHh
Q 027477 139 IKHSHAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQGMDTVYAIE 192 (223)
Q Consensus 139 ~~h~~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~G~~vl~~I~ 192 (223)
++ .+|.++..|.|-+ ...-||.-.+.+.- -.|.|+|||++||+++|--.
T Consensus 256 ~R--erG~iTvRn~Gvg--eGrvYIyRedR~ss-~sHnvVGrV~eGiELid~a~ 304 (512)
T COG4070 256 LR--ERGAITVRNVGVG--EGRVYIYREDRPSS-LSHNVVGRVIEGIELIDLAE 304 (512)
T ss_pred hh--hcceEEEEeeecc--cceEEEEecCCCCc-cccceeeeeecceEEEEecc
Confidence 65 4999999987643 34678876554332 35889999999999987554
No 34
>PRK00969 hypothetical protein; Provisional
Probab=96.10 E-value=0.035 Score=51.22 Aligned_cols=108 Identities=22% Similarity=0.347 Sum_probs=65.8
Q ss_pred eEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeCcEEEecccccCCCCCCCCCCCCCCCCCCcccc
Q 027477 61 RIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSGFVIQGGDIVRGDGKGSDSIYGGTFPDENFKIK 140 (223)
Q Consensus 61 ~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~ 140 (223)
=|.|+||.+.||+++..|.++.--.. ++ ==-..+|-..++.++--|+.. +...+.+||.+-.
T Consensus 379 vi~IeLydd~AP~s~~yFR~~tGL~~------~~--VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~ 440 (508)
T PRK00969 379 LIEIELYDDKAPRTVWYFRKVTGLKT------KP--VGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPED 440 (508)
T ss_pred EEEEEEcCcCCchHHHHHHHhcCCcc------cc--cceeEEEEEeCCeEEEccChh----------hccccCCCCCCCC
Confidence 58899999999999999999873220 00 001345555666544434332 1223445655555
Q ss_pred cCCCceEEEeccC---CCC------CcceEEEEcCCC-CCCCCCCcEEEEEEeCHHHHHHHh
Q 027477 141 HSHAGVVSMVNSG---PDS------NGSQFFITTVKA-SWLDGEHVVFGKVIQGMDTVYAIE 192 (223)
Q Consensus 141 h~~~G~lsma~~~---~~~------~~sqFfItl~~~-~~ld~~~~VFG~Vi~G~~vl~~I~ 192 (223)
-..+|.+++.|.. .+. .+..| +++ ..+++.+ ++|+|+ +++-|.++.
T Consensus 441 ~V~ag~IgvTN~a~k~~G~iGVR~~d~d~f----GPTGE~F~gTN-IIGrVv-~~e~Lk~lK 496 (508)
T PRK00969 441 KVKAGEIGVTNMAAKYKGMIGVRLSDNDEF----GPTGEPFEGTN-IIGRVV-NLEKLKKLK 496 (508)
T ss_pred ccccceEeeechhhhcCceEEEEccCCccc----CCCCCCccCce-eEEEec-ChHHhcccc
Confidence 5668888887643 111 12222 344 3566655 669999 999998887
No 35
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.19 Score=45.19 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEEEeCCCCchhHHHHHHhhh
Q 027477 61 RIVIGLYGQVVPKTVENFRALCT 83 (223)
Q Consensus 61 ~i~ieL~~~~aP~~~~nF~~l~~ 83 (223)
-|.||||.+.||+++..|.++..
T Consensus 377 iieIELyed~APrSv~yFRr~t~ 399 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRSTG 399 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhcc
Confidence 58999999999999999998864
No 36
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=90.92 E-value=0.98 Score=35.31 Aligned_cols=106 Identities=23% Similarity=0.193 Sum_probs=51.4
Q ss_pred eeEEEEEeCCCCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeC--cEEEecccccCCCCCCCCCCCCCCCCCCc
Q 027477 60 GRIVIGLYGQVVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSG--FVIQGGDIVRGDGKGSDSIYGGTFPDENF 137 (223)
Q Consensus 60 G~i~ieL~~~~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~--~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~ 137 (223)
-.++.+|..|.||+||+.|.+.-= |.+..+|-...+ -++.-++.. . ...+.||.
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~LP-------------~~~~~~HarwSG~ei~~~l~~~~-~----------~~~~~EN~ 63 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEALP-------------LKGKVIHARWSGEEIWIPLPDFD-P----------FEPGRENH 63 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--S-S----------S---S-SE
T ss_pred eEEEEEEcccCChHHHHHHHHhCC-------------CCCcEEEEEEECcEEEEECCCcC-c----------CCCCCCcC
Confidence 367899999999999999998861 444444444333 233334331 0 01223433
Q ss_pred ccccCCCceEEEe--c-cCCC--CC-cceEEEEcCCC--------CCCCCCCcEEEEEEeCHHHHHHHh
Q 027477 138 KIKHSHAGVVSMV--N-SGPD--SN-GSQFFITTVKA--------SWLDGEHVVFGKVIQGMDTVYAIE 192 (223)
Q Consensus 138 ~~~h~~~G~lsma--~-~~~~--~~-~sqFfItl~~~--------~~ld~~~~VFG~Vi~G~~vl~~I~ 192 (223)
. .+..+|-|.+. . ...+ .. -++.=|..+.. .++-+ .+|++|++|+|-+.++.
T Consensus 64 T-~~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~G--N~FatI~egle~la~~~ 129 (147)
T PF12903_consen 64 T-VTPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPG--NHFATITEGLEELAEAC 129 (147)
T ss_dssp E-SS--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--E--EEEEEEEESHHHHHHHH
T ss_pred c-ccCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccce--eEEEEEcCCHHHHHHHH
Confidence 2 23346777666 1 1100 11 13333333322 23333 57999999999887765
No 37
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=76.55 E-value=2.1 Score=30.98 Aligned_cols=7 Identities=57% Similarity=0.842 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 027477 13 YLLLFVL 19 (223)
Q Consensus 13 ~~~~~~~ 19 (223)
++||.++
T Consensus 6 ~llL~l~ 12 (95)
T PF07172_consen 6 FLLLGLL 12 (95)
T ss_pred HHHHHHH
Confidence 3333333
No 38
>COG5510 Predicted small secreted protein [Function unknown]
Probab=62.69 E-value=12 Score=22.99 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 027477 8 FVRTRYLLLFVLIFVFLIAAFSS 30 (223)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~ 30 (223)
|++++.+.+++++++++.++|-.
T Consensus 2 mk~t~l~i~~vll~s~llaaCNT 24 (44)
T COG5510 2 MKKTILLIALVLLASTLLAACNT 24 (44)
T ss_pred chHHHHHHHHHHHHHHHHHHhhh
Confidence 34555666666667677777743
No 39
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=53.16 E-value=28 Score=29.53 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEeCCC----CchhHHHHHHhhhCCC
Q 027477 63 VIGLYGQV----VPKTVENFRALCTGEK 86 (223)
Q Consensus 63 ~ieL~~~~----aP~~~~nF~~l~~~~~ 86 (223)
|+|||..+ ||..=++|.+++....
T Consensus 44 VVELfTSQGCsSCPPAd~~l~k~a~~~~ 71 (261)
T COG5429 44 VVELFTSQGCSSCPPADANLAKLADDPG 71 (261)
T ss_pred EEEEeecCCcCCCChHHHHHHHhccCCC
Confidence 78888654 9999999999998663
No 40
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=44.35 E-value=49 Score=29.96 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccchhhhcccccccccceEEEEEEeCceeeeeEEEEEeCCCCchhH
Q 027477 5 ISGFVRTRYLLLFVLIFVFLIAAFSSRRKEEEKEEDVFEITHRVYLDVDIEEQRLGRIVIGLYGQVVPKTV 75 (223)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~~~ 75 (223)
+++.|+...+|++.++..+..++++---++......-.+.-+..|-+..+.-|+.| |+|.+|.|+
T Consensus 354 l~aSmrElgLLIFFlfIgviLFsSavYFAEade~~S~F~SIPdaFWwavVTMTTVG------YGDm~P~Tv 418 (507)
T KOG1545|consen 354 LRASMRELGLLIFFLFIGVILFSSAVYFAEADEPESHFSSIPDAFWWAVVTMTTVG------YGDMVPVTV 418 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCccCCCcCcccceEEEEEEEeec------cccceeccc
Confidence 45567777777665544433333221112222211222222334444444445555 777777765
No 41
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=43.77 E-value=26 Score=28.93 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccc
Q 027477 8 FVRTRYLLLFVLIFVFLIAAFSSRR 32 (223)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (223)
+|++..++++.+++++|.+|+..+.
T Consensus 3 ~~~~~~~~l~~~As~LL~aC~~~~~ 27 (206)
T COG3017 3 MMKRLLFLLLALASLLLTACTLTAS 27 (206)
T ss_pred hHHHHHHHHHHHHHHHHHhccCcCC
Confidence 3444444555555555555544443
No 42
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=42.43 E-value=30 Score=25.85 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=28.7
Q ss_pred CCCceEEEeccCCCCCcceEEEEcCCCC-------CCCCCCcEEEEEEeCHHHHHHHh
Q 027477 142 SHAGVVSMVNSGPDSNGSQFFITTVKAS-------WLDGEHVVFGKVIQGMDTVYAIE 192 (223)
Q Consensus 142 ~~~G~lsma~~~~~~~~sqFfItl~~~~-------~ld~~~~VFG~Vi~G~~vl~~I~ 192 (223)
...|-|+.-..+.+ |-|-+++.| .+-....++|+|.+|.+.+.++.
T Consensus 60 ~~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~ 112 (120)
T PF04126_consen 60 VEAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVK 112 (120)
T ss_dssp B-TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--
T ss_pred ccCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCC
Confidence 35788877654433 777777774 34456889999999999998886
No 43
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=40.31 E-value=44 Score=28.81 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccc
Q 027477 10 RTRYLLLFVLIFVFLIAAFSSRR 32 (223)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (223)
....+++++++++++.++|++..
T Consensus 4 ~~~~~i~~lll~lllva~C~~s~ 26 (310)
T COG4594 4 KKTAIILTLLLLLLLVAACSSSD 26 (310)
T ss_pred hhhHHHHHHHHHHHHHHHhcCcC
Confidence 33445555555666666666654
No 44
>PF15284 PAGK: Phage-encoded virulence factor
Probab=35.74 E-value=44 Score=22.02 Aligned_cols=6 Identities=50% Similarity=0.512 Sum_probs=2.2
Q ss_pred HHHhcc
Q 027477 24 LIAAFS 29 (223)
Q Consensus 24 ~~~~~~ 29 (223)
++++.|
T Consensus 16 sA~~FS 21 (61)
T PF15284_consen 16 SAAGFS 21 (61)
T ss_pred HHhhhh
Confidence 333333
No 45
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=35.72 E-value=42 Score=23.65 Aligned_cols=9 Identities=22% Similarity=0.261 Sum_probs=4.1
Q ss_pred HHHHhcccc
Q 027477 23 FLIAAFSSR 31 (223)
Q Consensus 23 ~~~~~~~~~ 31 (223)
.|++|.+++
T Consensus 14 tLtVALAAP 22 (100)
T PF05984_consen 14 TLTVALAAP 22 (100)
T ss_pred HHHHHhhcc
Confidence 344444444
No 46
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=34.07 E-value=2.1e+02 Score=21.80 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=30.5
Q ss_pred ceeeeeEEEEEeCCCCc---------hhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeC
Q 027477 56 EQRLGRIVIGLYGQVVP---------KTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSG 108 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP---------~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~ 108 (223)
++..||+.+..-.+.++ ++++.|++..+. -+.-+.+.|+-++++
T Consensus 9 Esd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L~k---------yI~veeStFylvvrd 61 (130)
T PF06138_consen 9 ESDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVLKK---------YIDVEESTFYLVVRD 61 (130)
T ss_pred eccCceeEEEEeCCCcccccccchHHHHHHHHHHHHHh---------hEEecccEEEEEEec
Confidence 45678877777655433 257899988852 224578999999987
No 47
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=32.03 E-value=44 Score=23.63 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccc
Q 027477 9 VRTRYLLLFVLIFVFLIAAFSSRR 32 (223)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~ 32 (223)
|++++++..+++++++.++|++..
T Consensus 1 mk~klll~aviLs~~LLaGCAs~~ 24 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVNEQ 24 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCCch
Confidence 466777777777666666666553
No 48
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=31.37 E-value=76 Score=20.82 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=9.7
Q ss_pred Ccchhhh-HHHHHHHHHHHHHHH
Q 027477 1 MRREISG-FVRTRYLLLFVLIFV 22 (223)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~ 22 (223)
|+|.-.. |.+..+++.+++++.
T Consensus 1 ~r~k~~~~mtriVLLISfiIlfg 23 (59)
T PF11119_consen 1 MRRKKNSRMTRIVLLISFIILFG 23 (59)
T ss_pred CCCcccchHHHHHHHHHHHHHHH
Confidence 4533333 444444444554444
No 49
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=28.94 E-value=51 Score=21.71 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q 027477 12 RYLLLFVLIFVFLIAAFSSRR 32 (223)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ 32 (223)
+.++++++..++.+...+++.
T Consensus 4 Kl~vialLC~aLva~vQ~APQ 24 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQSAPQ 24 (65)
T ss_pred hhhHHHHHHHHHHHHHhcCcc
Confidence 334444444444444444444
No 50
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=26.11 E-value=42 Score=30.15 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=32.7
Q ss_pred CCceEEEeccCCCCCcceEEEEcCCCCCCCCCCcEEEEEEe-CHHHHHHHh
Q 027477 143 HAGVVSMVNSGPDSNGSQFFITTVKASWLDGEHVVFGKVIQ-GMDTVYAIE 192 (223)
Q Consensus 143 ~~G~lsma~~~~~~~~sqFfItl~~~~~ld~~~~VFG~Vi~-G~~vl~~I~ 192 (223)
.+|.|.+-|..-..-..+.=|++.+.|. |.+.-|+|+|.+ -+.+|+-|.
T Consensus 299 ~~G~ItIdN~~ygRY~GElQI~~~dlp~-d~rvNViG~V~~~d~~LLd~I~ 348 (357)
T PF05913_consen 299 KRGDITIDNENYGRYKGELQIVKKDLPA-DERVNVIGRVDEEDLPLLDYIK 348 (357)
T ss_dssp -TTEEEEE-GGGGGGTT-EEEESS-B----TTEEEEEEE-GGGGGGGGG--
T ss_pred cCceEEEeCCCccccccEEEEEcccCCC-CCCeeEEEEECHHHHHHHHhcC
Confidence 4999999987655556689999998876 888889999995 688888887
No 51
>PRK15396 murein lipoprotein; Provisional
Probab=25.71 E-value=73 Score=22.12 Aligned_cols=21 Identities=33% Similarity=0.295 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 027477 11 TRYLLLFVLIFVFLIAAFSSR 31 (223)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ 31 (223)
+++++..++++++++++|++.
T Consensus 4 ~kl~l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 4 TKLVLGAVILGSTLLAGCSSN 24 (78)
T ss_pred hHHHHHHHHHHHHHHHHcCCc
Confidence 355666666666666777655
No 52
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=23.60 E-value=53 Score=24.19 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=6.3
Q ss_pred HHHHHHHHHhccc
Q 027477 18 VLIFVFLIAAFSS 30 (223)
Q Consensus 18 ~~~~~~~~~~~~~ 30 (223)
++++++++++|+.
T Consensus 10 ~~~~~~~LsgCs~ 22 (113)
T PRK11548 10 AAVLLMLTAGCST 22 (113)
T ss_pred HHHHHHHHcccCC
Confidence 3344445566643
No 53
>KOG4088 consensus Translocon-associated complex TRAP, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.57 E-value=2.1e+02 Score=22.29 Aligned_cols=17 Identities=0% Similarity=-0.097 Sum_probs=10.7
Q ss_pred ceeeeeEEEEEeCCCCc
Q 027477 56 EQRLGRIVIGLYGQVVP 72 (223)
Q Consensus 56 ~t~~G~i~ieL~~~~aP 72 (223)
.+.++.+.++--+...|
T Consensus 41 t~fi~EftLqCsn~~~n 57 (167)
T KOG4088|consen 41 TTFITEFTLQCSNNPKN 57 (167)
T ss_pred EEEEEEEEEEeCCCCcc
Confidence 35678877776665444
No 54
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=23.24 E-value=1.6e+02 Score=23.92 Aligned_cols=16 Identities=6% Similarity=0.133 Sum_probs=10.0
Q ss_pred eeEEEEEeCCCCchhH
Q 027477 60 GRIVIGLYGQVVPKTV 75 (223)
Q Consensus 60 G~i~ieL~~~~aP~~~ 75 (223)
+.|+|...+...|...
T Consensus 32 ~~l~vg~~~~~~~~~~ 47 (254)
T TIGR01098 32 KELNFGILPGENASNL 47 (254)
T ss_pred CceEEEECCCCCHHHH
Confidence 4566777776666443
No 55
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.70 E-value=27 Score=21.93 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=16.8
Q ss_pred eEEEEEEeCceeeeeEEEEEeCCCCch
Q 027477 47 RVYLDVDIEEQRLGRIVIGLYGQVVPK 73 (223)
Q Consensus 47 ~v~~di~i~~t~~G~i~ieL~~~~aP~ 73 (223)
.+.+.+-+++ -||++|||.++.|-.
T Consensus 18 ~ivmRvPleG--GGRLVvEl~~~Ea~~ 42 (51)
T PF11314_consen 18 GIVMRVPLEG--GGRLVVELNPDEAKE 42 (51)
T ss_pred eEEEEEecCC--CcEEEEEeCHHHHHH
Confidence 4455555443 389999999887543
No 56
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=22.38 E-value=1.4e+02 Score=23.82 Aligned_cols=6 Identities=33% Similarity=0.844 Sum_probs=3.2
Q ss_pred eeeEEE
Q 027477 59 LGRIVI 64 (223)
Q Consensus 59 ~G~i~i 64 (223)
.|+|+|
T Consensus 51 tGnV~i 56 (180)
T PRK10894 51 TGNVVV 56 (180)
T ss_pred EeeEEE
Confidence 455554
No 57
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=22.22 E-value=1.4e+02 Score=18.74 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=8.3
Q ss_pred HHHHHHHHH-HHHHHHHHHhc
Q 027477 9 VRTRYLLLF-VLIFVFLIAAF 28 (223)
Q Consensus 9 ~~~~~~~~~-~~~~~~~~~~~ 28 (223)
|++.+.+++ ++++++..++|
T Consensus 2 mKk~i~~i~~~l~~~~~l~~C 22 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLTAC 22 (48)
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 444444433 33333334444
No 58
>PRK09810 entericidin A; Provisional
Probab=21.84 E-value=1e+02 Score=18.67 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 027477 9 VRTRYLLL 16 (223)
Q Consensus 9 ~~~~~~~~ 16 (223)
|++.+.++
T Consensus 2 Mkk~~~l~ 9 (41)
T PRK09810 2 MKRLIVLV 9 (41)
T ss_pred hHHHHHHH
Confidence 44444433
No 59
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.78 E-value=1.1e+02 Score=20.05 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=8.6
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 027477 4 EISGFVRTRYLLLFVLIF 21 (223)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (223)
+.+.+++++.+++.++++
T Consensus 31 ~qk~~~~~~~i~~~~~i~ 48 (59)
T PF09889_consen 31 RQKRMRKTQYIFFGIFIL 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555444443
No 60
>TIGR03562 osmo_induc_OsmC peroxiredoxin, OsmC subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress.
Probab=21.66 E-value=3e+02 Score=20.82 Aligned_cols=25 Identities=8% Similarity=0.207 Sum_probs=15.9
Q ss_pred CCchhHHHHHHhhhCCCCCCCCCCcccccCCceeEeeeC
Q 027477 70 VVPKTVENFRALCTGEKGTGASGKPLHFKGKPFHRIVSG 108 (223)
Q Consensus 70 ~aP~~~~nF~~l~~~~~g~~~~~~~~~Y~g~~f~ri~~~ 108 (223)
..+...+..++++ -+.|.++|.+++
T Consensus 105 ~~~e~~~rll~~A--------------~k~CpVs~sl~~ 129 (135)
T TIGR03562 105 IDEAKFQEIAEKA--------------KEGCPVSKALAA 129 (135)
T ss_pred CCHHHHHHHHHHH--------------HhhCcHhHhcCC
Confidence 4566677777776 235677776654
No 61
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=20.14 E-value=27 Score=27.29 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=16.9
Q ss_pred eeEEEEEeCCCCchhH---HHHHHhhh
Q 027477 60 GRIVIGLYGQVVPKTV---ENFRALCT 83 (223)
Q Consensus 60 G~i~ieL~~~~aP~~~---~nF~~l~~ 83 (223)
+-++|..|..+||... .-|.++++
T Consensus 48 ~~vvV~Fya~wC~~Ck~l~p~l~~la~ 74 (152)
T cd02962 48 VTWLVEFFTTWSPECVNFAPVFAELSL 74 (152)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 4689999999999443 23455654
Done!