Query 027478
Match_columns 223
No_of_seqs 186 out of 1539
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:31:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 3.7E-48 7.9E-53 324.7 23.3 215 2-220 1-224 (224)
2 PF12481 DUF3700: Aluminium in 100.0 1.4E-42 3.1E-47 286.6 20.3 219 2-220 1-228 (228)
3 PLN02549 asparagine synthase ( 100.0 6.7E-39 1.4E-43 303.5 21.1 183 1-202 1-196 (578)
4 PRK09431 asnB asparagine synth 100.0 1.9E-38 4.2E-43 299.5 20.9 183 1-202 1-197 (554)
5 PTZ00077 asparagine synthetase 100.0 2.8E-38 6E-43 299.9 19.9 183 1-202 1-206 (586)
6 COG0367 AsnB Asparagine syntha 100.0 2.1E-37 4.6E-42 291.7 18.4 182 1-203 1-203 (542)
7 PRK08525 amidophosphoribosyltr 100.0 1.9E-35 4E-40 272.7 21.6 200 1-217 1-256 (445)
8 PRK07631 amidophosphoribosyltr 100.0 2.5E-35 5.5E-40 272.8 20.5 200 1-218 11-265 (475)
9 TIGR03104 trio_amidotrans aspa 100.0 1E-35 2.2E-40 283.3 18.4 159 1-179 1-169 (589)
10 PRK07272 amidophosphoribosyltr 100.0 1.4E-34 3E-39 268.4 20.4 203 1-220 11-269 (484)
11 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 8E-35 1.7E-39 239.4 16.5 157 1-173 1-165 (181)
12 TIGR03108 eps_aminotran_1 exos 100.0 1.9E-34 4.2E-39 276.4 18.5 161 1-179 1-170 (628)
13 PRK06781 amidophosphoribosyltr 100.0 6.9E-34 1.5E-38 263.3 21.5 200 1-218 11-265 (471)
14 cd00712 AsnB Glutamine amidotr 100.0 7.9E-34 1.7E-38 239.6 18.6 159 2-180 1-168 (220)
15 PRK06388 amidophosphoribosyltr 100.0 7.6E-34 1.6E-38 263.1 20.1 199 1-217 19-272 (474)
16 PRK07349 amidophosphoribosyltr 100.0 2.2E-33 4.9E-38 261.0 21.0 201 1-217 33-293 (500)
17 PRK09123 amidophosphoribosyltr 100.0 3.1E-33 6.7E-38 259.6 20.9 199 1-217 21-276 (479)
18 TIGR01536 asn_synth_AEB aspara 100.0 1.8E-33 4E-38 261.1 19.3 143 27-179 15-167 (467)
19 PRK07847 amidophosphoribosyltr 100.0 2.8E-33 6.1E-38 260.9 20.2 201 1-218 23-284 (510)
20 PRK08341 amidophosphoribosyltr 100.0 8.2E-33 1.8E-37 254.4 21.1 195 1-217 4-252 (442)
21 KOG0571 Asparagine synthase (g 100.0 2.4E-34 5.3E-39 256.6 10.4 185 1-204 1-198 (543)
22 PRK05793 amidophosphoribosyltr 100.0 1.5E-32 3.3E-37 254.8 20.8 201 1-217 14-269 (469)
23 PLN02440 amidophosphoribosyltr 100.0 3.9E-32 8.5E-37 252.6 20.7 200 1-217 1-256 (479)
24 PRK09246 amidophosphoribosyltr 100.0 3.5E-32 7.7E-37 254.2 19.1 203 1-219 1-272 (501)
25 cd00715 GPATase_N Glutamine am 100.0 3.4E-31 7.4E-36 228.1 21.5 195 2-213 1-251 (252)
26 cd00714 GFAT Glutamine amidotr 100.0 1.2E-31 2.6E-36 226.0 17.5 161 2-181 1-203 (215)
27 TIGR01134 purF amidophosphorib 100.0 1.2E-30 2.6E-35 240.8 21.2 199 2-217 1-254 (442)
28 PRK00331 glucosamine--fructose 100.0 6.7E-30 1.5E-34 244.1 19.7 177 1-197 1-225 (604)
29 cd01907 GlxB Glutamine amidotr 100.0 9.1E-29 2E-33 212.9 18.1 161 2-179 1-231 (249)
30 TIGR01135 glmS glucosamine--fr 100.0 1.2E-28 2.7E-33 235.5 17.9 176 2-197 1-224 (607)
31 COG0034 PurF Glutamine phospho 100.0 2.7E-28 6E-33 220.3 18.4 203 1-218 4-265 (470)
32 PTZ00295 glucosamine-fructose- 100.0 3.6E-28 7.9E-33 233.6 18.1 177 1-197 24-255 (640)
33 cd00352 Gn_AT_II Glutamine ami 100.0 2.6E-27 5.7E-32 197.7 18.9 156 31-188 21-216 (220)
34 PF13537 GATase_7: Glutamine a 100.0 2.7E-28 5.9E-33 189.1 10.2 107 62-177 9-125 (125)
35 cd01909 betaLS_CarA_N Glutamin 99.9 3.3E-27 7.2E-32 196.4 14.6 96 74-181 50-151 (199)
36 PF13522 GATase_6: Glutamine a 99.9 3.8E-25 8.3E-30 173.4 13.8 120 42-171 1-133 (133)
37 KOG0572 Glutamine phosphoribos 99.9 5.5E-25 1.2E-29 194.4 15.9 206 1-219 1-274 (474)
38 PLN02981 glucosamine:fructose- 99.9 1.3E-24 2.7E-29 210.1 17.0 184 1-197 1-277 (680)
39 PTZ00394 glucosamine-fructose- 99.9 2.4E-24 5.3E-29 207.7 17.7 184 1-197 1-280 (670)
40 COG0449 GlmS Glucosamine 6-pho 99.9 4.8E-21 1.1E-25 179.8 13.0 161 1-181 1-201 (597)
41 KOG0573 Asparagine synthase [A 99.7 2.3E-16 4.9E-21 142.5 13.6 144 1-164 1-150 (520)
42 cd00713 GltS Glutamine amidotr 99.6 1.9E-14 4.1E-19 131.3 14.2 137 50-197 200-393 (413)
43 TIGR03442 conserved hypothetic 99.5 1.4E-13 3.1E-18 118.7 13.6 122 52-188 83-235 (251)
44 cd01908 YafJ Glutamine amidotr 99.5 3.6E-13 7.7E-18 116.4 11.1 119 51-176 80-240 (257)
45 KOG1268 Glucosamine 6-phosphat 99.5 1.8E-13 3.9E-18 125.8 9.1 105 52-161 80-203 (670)
46 PF00310 GATase_2: Glutamine a 99.5 3.7E-13 7.9E-18 121.6 10.2 114 49-172 193-361 (361)
47 PRK11750 gltB glutamate syntha 98.7 1.8E-07 4E-12 96.0 13.8 59 124-184 332-390 (1485)
48 PF13230 GATase_4: Glutamine a 98.2 1.6E-05 3.4E-10 69.5 9.9 95 52-149 72-187 (271)
49 COG0067 GltB Glutamate synthas 97.7 0.00045 9.9E-09 62.6 10.5 122 50-180 201-349 (371)
50 PF09147 DUF1933: Domain of un 97.6 0.00075 1.6E-08 55.0 10.4 93 74-178 47-145 (201)
51 COG0121 Predicted glutamine am 95.7 0.098 2.1E-06 45.3 9.4 40 51-90 70-116 (252)
52 KOG0399 Glutamate synthase [Am 87.1 2.4 5.3E-05 44.2 7.7 49 125-175 407-455 (2142)
53 COG0067 GltB Glutamate synthas 70.3 3.2 6.8E-05 38.0 2.2 38 1-47 12-51 (371)
54 PF10736 DUF2527: Protein of u 63.5 2.3 5E-05 25.4 -0.0 8 1-8 1-8 (38)
55 PF04566 RNA_pol_Rpb2_4: RNA p 47.7 27 0.00059 23.6 3.2 27 132-159 33-61 (63)
56 TIGR03823 FliZ flagellar regul 36.1 21 0.00045 28.8 1.3 19 74-92 33-51 (168)
57 PRK11582 flagella biosynthesis 35.7 21 0.00046 28.7 1.4 19 74-92 33-51 (169)
58 PF00310 GATase_2: Glutamine a 35.1 23 0.0005 32.3 1.7 22 27-48 18-45 (361)
59 PF08973 TM1506: Domain of unk 31.7 18 0.00039 28.3 0.4 27 129-158 10-36 (134)
60 COG4911 Uncharacterized conser 23.8 96 0.0021 23.5 3.0 25 120-144 73-97 (123)
61 COG1763 MobB Molybdopterin-gua 23.4 80 0.0017 25.4 2.7 20 23-42 12-31 (161)
62 COG4315 Uncharacterized protei 22.9 87 0.0019 24.2 2.6 32 125-161 86-117 (138)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=3.7e-48 Score=324.73 Aligned_cols=215 Identities=62% Similarity=1.051 Sum_probs=189.1
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEecCCCCCCCceEeeCCcEEEEEE
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE 81 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lg~~r~~~~~~~QP~~~~~~~~~lv~n 81 (223)
++||-+.++++|+++++|.+... +..-.++++.+....|++..+.+++...++++..+...-.|.+++.++++++++|
T Consensus 1 laif~~~~~~~p~el~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn 78 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ 78 (224)
T ss_pred CcccccccCCCChHHcCCCcccc--CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence 58999999999999998876543 3344579999999999988888888899998765555567778887888999999
Q ss_pred EEEecchhhHHhcCC--CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEE
Q 027478 82 GALDNLGSLRQQYGL--AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWG 159 (223)
Q Consensus 82 GeI~N~~~L~~~lg~--~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~ 159 (223)
|||||+.+|+++|+. +.+|+|+ ++++|++|++.|+++..+++++|+|+|||+|||.+++++++|||++|++||||+
T Consensus 79 GeIyN~~eLr~~lg~~~t~sD~ev--Il~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg 156 (224)
T cd01910 79 GHLDNLGSLKQQYGLSKTANEAML--VIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWG 156 (224)
T ss_pred eEEcCHHHHHHHhCCCCCCcHHHH--HHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEE
Confidence 999999999999976 4555555 489999997777766678999999999999999999999999999999999999
Q ss_pred EecCCEEEEEechhhHhhhccccccccCC-----CCCCeEEeeCCCCccccccCCccc--ccCceEEe
Q 027478 160 ITADGHVAFADDADLLKGACGKSLASFPQ-----AVGGLRSFENPKNKITAVPAAEEE--IWGATFKV 220 (223)
Q Consensus 160 ~~~dg~~~faSe~~aL~~~~~~~~~~~P~-----~~~~~~~~~~~~~~~~~~~r~~s~--~~g~~~~~ 220 (223)
...+|.++||||+++|...|.+.+.+||| +.+++++|++|.|+.+++||+||+ |||++|||
T Consensus 157 ~~~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~ggl~~~~~p~~~~~~vp~~~s~g~~cg~~f~v 224 (224)
T cd01910 157 IAADGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEGGLRSFEHPMNKLKAVPRVDSEGEMCGATFKV 224 (224)
T ss_pred EeCCCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCCCEEEeeCCCchhhcCCcccCcccEecceeeC
Confidence 87678999999999999999888999999 767899999999999999999999 99999997
No 2
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=1.4e-42 Score=286.62 Aligned_cols=219 Identities=54% Similarity=0.955 Sum_probs=203.8
Q ss_pred eeeeeccccCCchhhhcCCCCCCC--CcchHHHHHHHhHcCCCCCcceEECCcEEEEEEecCCCCCCCceEeeCCcEEEE
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPS--PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL 79 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lg~~r~~~~~~~QP~~~~~~~~~lv 79 (223)
++||.+.++++|++|++|.+..+. +++...++++.+....|++..+.+++...|++++.+...-+|..+..-+++.++
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 689999999999999999966433 688999999999999999999999999999999866555566666666789999
Q ss_pred EEEEEecchhhHHhcCCCCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEE
Q 027478 80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWG 159 (223)
Q Consensus 80 ~nGeI~N~~~L~~~lg~~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~ 159 (223)
|-|.|.|...|+++||++++.+|+++++++|+...|+||++..++++.|+|.||||+||..++++++|||+-|.-|||||
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG 160 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG 160 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred EecCCEEEEEechhhHhhhccccccccCC-----CCCCeEEeeCCCCccccccCCccc--ccCceEEe
Q 027478 160 ITADGHVAFADDADLLKGACGKSLASFPQ-----AVGGLRSFENPKNKITAVPAAEEE--IWGATFKV 220 (223)
Q Consensus 160 ~~~dg~~~faSe~~aL~~~~~~~~~~~P~-----~~~~~~~~~~~~~~~~~~~r~~s~--~~g~~~~~ 220 (223)
.+.||.++||++...|...|.++..+||+ +.+|+++|+||.++++++||+||+ |||++|||
T Consensus 161 i~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~~Gl~sfehP~nk~k~~prvDseG~~cGa~FkV 228 (228)
T PF12481_consen 161 IAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSEGGLRSFEHPKNKVKAMPRVDSEGQMCGATFKV 228 (228)
T ss_pred EeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEecCceEeecCCcccccccccccCcccCcceeeeC
Confidence 99889999999999999999999999999 778999999999999999999999 99999997
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=6.7e-39 Score=303.54 Aligned_cols=183 Identities=25% Similarity=0.382 Sum_probs=157.0
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEe---cCCCCCCCceEeeCCcEE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lg~~r---~~~~~~~QP~~~~~~~~~ 77 (223)
||||+|....... .......+.+|++.|+|||||+.+++..++++|||+| .+...+.||+.+.+++++
T Consensus 1 MCGI~g~~~~~~~---------~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~ 71 (578)
T PLN02549 1 MCGILAVLGCSDD---------SQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIV 71 (578)
T ss_pred CCcEEEEEeCCCC---------cchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEE
Confidence 9999998721111 0112356789999999999999999998889999999 344578999998888999
Q ss_pred EEEEEEEecchhhHHhcC-C---CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCC
Q 027478 78 CLFEGALDNLGSLRQQYG-L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (223)
Q Consensus 78 lv~nGeI~N~~~L~~~lg-~---~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~ 153 (223)
+++||||||+.+|+++|. + +.+|+|++ +++|++|| .+++++|+|+|||++||..+++++++|||+|+
T Consensus 72 lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evi--l~ly~~~G-------~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~Gi 142 (578)
T PLN02549 72 VTANGEIYNHKELREKLKLHKFRTGSDCEVI--AHLYEEHG-------EEFVDMLDGMFSFVLLDTRDNSFIAARDHIGI 142 (578)
T ss_pred EEEEEEEEcHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHH-------HHHHHhCCCceEEEEEECCCCEEEEEECCCCC
Confidence 999999999999999984 2 78899987 79999999 79999999999999999989999999999999
Q ss_pred ccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCeEEeeCCCCc
Q 027478 154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGLRSFENPKNK 202 (223)
Q Consensus 154 ~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~~~~~~~~~~ 202 (223)
|||||+...++.++||||+++|...+. .|..||| ..+++++|.++.|.
T Consensus 143 kPLyyg~~~~g~~~fASE~KaL~~~~~-~I~~lpPGh~l~~~~~~~~~y~~~~~~ 196 (578)
T PLN02549 143 TPLYIGWGLDGSVWFASEMKALCDDCE-RFEEFPPGHYYSSKAGGFRRWYNPPWF 196 (578)
T ss_pred CCeEEEEecCCeEEEEecHHHHHHHhC-CEEEeCCCeEEEEcCCCEEEEEecccC
Confidence 999999875678999999999999875 4889999 45678999888765
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=1.9e-38 Score=299.52 Aligned_cols=183 Identities=21% Similarity=0.369 Sum_probs=155.7
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEe---cCCCCCCCceEeeCCcEE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lg~~r---~~~~~~~QP~~~~~~~~~ 77 (223)
||||+|....... .......+.+|+++|+|||||+.+++..++++|||+| .+...+.||+.+.+++++
T Consensus 1 MCGI~g~~~~~~~---------~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~ 71 (554)
T PRK09431 1 MCGIFGILDIKTD---------ADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHV 71 (554)
T ss_pred CceEEEEEcCCCc---------chhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEE
Confidence 9999998621111 0111367789999999999999999998999999999 344568999998888999
Q ss_pred EEEEEEEecchhhHHhcC--C---CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCC
Q 027478 78 CLFEGALDNLGSLRQQYG--L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (223)
Q Consensus 78 lv~nGeI~N~~~L~~~lg--~---~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G 152 (223)
+++||||||+.+|+++|. + +.+|+|++ +++|++|| .+++++|+|+|||++||.+++++++||||+|
T Consensus 72 lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Evi--l~ly~~~G-------~~~~~~L~G~FAf~i~D~~~~~l~laRD~~G 142 (554)
T PRK09431 72 LAVNGEIYNHQELRAELGDKYAFQTGSDCEVI--LALYQEKG-------PDFLDDLDGMFAFALYDSEKDAYLIARDPIG 142 (554)
T ss_pred EEEEEEEecHHHHHHHHhccCCcCCCCHHHHH--HHHHHHHH-------HHHHHhCCCceEEEEEECCCCEEEEEeCCCC
Confidence 999999999999999883 2 78899987 79999999 7999999999999999999999999999999
Q ss_pred CccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCeEEeeCCCCc
Q 027478 153 KVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGLRSFENPKNK 202 (223)
Q Consensus 153 ~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~~~~~~~~~~ 202 (223)
+|||||+..+++.++||||+++|...|. .|..||| ..+.+.+|..+.|.
T Consensus 143 ikPLyy~~~~~~~~~faSE~kaL~~~~~-~I~~lpPGh~l~~~~g~~~~y~~~~~~ 197 (554)
T PRK09431 143 IIPLYYGYDEHGNLYFASEMKALVPVCK-TIKEFPPGHYYWSKDGEFVRYYQRDWF 197 (554)
T ss_pred CcceEEEEeCCCeEEEecchHHHHHhcC-CEEEECCCeEEEECCCcEEEecCCCcc
Confidence 9999999974478999999999998875 5889999 33458888777663
No 5
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=299.88 Aligned_cols=183 Identities=25% Similarity=0.380 Sum_probs=153.0
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC-----CcEEEEEEe---cCCCCCCCceEee
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG-----DNVTLAYTH---QNESPLRQRSFAV 72 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~-----~~~~lg~~r---~~~~~~~QP~~~~ 72 (223)
||||+|....... .......+.+|+++|+|||||+.+++.. +.+.|||+| .+...+.||+.+.
T Consensus 1 MCGI~gi~~~~~~---------~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~ 71 (586)
T PTZ00077 1 MCGILAIFNSKGE---------RHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDD 71 (586)
T ss_pred CceEEEEEecCCc---------hhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCC
Confidence 9999998621111 0112356778999999999999999974 578999999 3445689999998
Q ss_pred CCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCCCcHH-HHHhcccCceEEEEEECCCCEEE
Q 027478 73 KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPN-HVVGHLSGYFAFIVYDKSTSTLF 145 (223)
Q Consensus 73 ~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~~~~~-~~l~~L~G~fa~vi~d~~~~~l~ 145 (223)
+++++++|||||||+.+|+++| |+ +.+|+|++ +++|++|| . +++++|+|+|||++||..+++++
T Consensus 72 d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evi--l~ly~~~G-------~~~~l~~L~G~FAf~i~D~~~~~l~ 142 (586)
T PTZ00077 72 DETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEII--GHLYKEYG-------PKDFWNHLDGMFATVIYDMKTNTFF 142 (586)
T ss_pred CCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhC-------HHHHHHhcCCCEEEEEEECCCCEEE
Confidence 8899999999999999999988 33 78899987 79999998 6 89999999999999999999999
Q ss_pred EEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CC--CCeEEeeCCCCc
Q 027478 146 VASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AV--GGLRSFENPKNK 202 (223)
Q Consensus 146 laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~--~~~~~~~~~~~~ 202 (223)
+||||+|+|||||+...++.++||||+++|...+. .|..||| .. ..+++|..+.|+
T Consensus 143 ~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~~~-~I~~lpPGh~l~~~~~~~~~~~y~~~~~~ 206 (586)
T PTZ00077 143 AARDHIGIIPLYIGYAKDGSIWFSSELKALHDQCV-EVKQFPPGHYYDQTKEKGEFVRYYNPNWH 206 (586)
T ss_pred EEECCCCCcCeEEEEecCCeEEEEecHHHHHHhcC-CEEEeCCCcEEEecCCcceeEEecCCccc
Confidence 99999999999999854678999999999998875 5888999 21 357888777764
No 6
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-37 Score=291.69 Aligned_cols=182 Identities=25% Similarity=0.391 Sum_probs=155.6
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEe---cCCCCCCCceEeeCCcEE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lg~~r---~~~~~~~QP~~~~~~~~~ 77 (223)
||||+|..... ++ +. ....+.+|++.|.|||||..++|...++++||+| .+...++||+...+++++
T Consensus 1 MCGI~g~~~~~--------~~-~~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~ 70 (542)
T COG0367 1 MCGIAGILNFK--------NL-ID-AKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYA 70 (542)
T ss_pred CCceeeeeccc--------cc-cc-chHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEE
Confidence 99999997422 11 01 1678889999999999999999999999999999 344567999988667799
Q ss_pred EEEEEEEecchhhHHhcC---C---CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCC
Q 027478 78 CLFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQF 151 (223)
Q Consensus 78 lv~nGeI~N~~~L~~~lg---~---~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~ 151 (223)
++|||||||+.+|+++|. + +.+|||++ +++|++|| .+++++|+|+|||++||..+++|+++|||+
T Consensus 71 l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvi--l~~y~~~g-------~~~~~~l~G~fAfai~d~~~~~l~laRD~~ 141 (542)
T COG0367 71 IVYNGEIYNVEELRKELREAGYEFRTYSDTEVI--LTLYEEWG-------EDCVEHLNGMFAFAIYDETRQKLFLARDPF 141 (542)
T ss_pred EEECCEeeeHHHHHHHHHhcCceeccccchHHH--HHHHHHHH-------HHHHHHhccceEEEEEECCCCEEEEEecCC
Confidence 999999999999999984 3 78999998 79999999 789999999999999999999999999999
Q ss_pred CCccEEEEEecCCEEEEEechhhHhhh-----ccccccccCC------CCCC-eEEeeCCCCcc
Q 027478 152 GKVPLYWGITADGHVAFADDADLLKGA-----CGKSLASFPQ------AVGG-LRSFENPKNKI 203 (223)
Q Consensus 152 G~~PLyy~~~~dg~~~faSe~~aL~~~-----~~~~~~~~P~------~~~~-~~~~~~~~~~~ 203 (223)
|+|||||+.. ++.++||||.|+|..+ +. .|..+|| +.++ +.+|..+.+..
T Consensus 142 GikPLyy~~~-~~~l~faSE~Kal~~~~~~~~~~-~i~~l~pg~~l~~~~~~~~~~y~~~~~~~ 203 (542)
T COG0367 142 GVKPLYYTSK-NENLAFASEIKALLAHPVVRFLR-DIKELPPGHLLEFTDGGLIRRYWRLSEKT 203 (542)
T ss_pred CccccEEEec-CCceEEEechhhhhhCCcccccC-CeEEcCCCcEEEEcCCCceeeeecccccc
Confidence 9999999998 4669999999999998 54 4788888 4444 77777766553
No 7
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.9e-35 Score=272.75 Aligned_cols=200 Identities=16% Similarity=0.192 Sum_probs=156.2
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (223)
||||||.....+ ....+..|+.+|+|||+|+.++.. .+++
T Consensus 1 MCGI~G~~~~~~-------------~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~ 67 (445)
T PRK08525 1 MCAVVGVINSKN-------------AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEI 67 (445)
T ss_pred CceEEEEEcCcc-------------HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcE
Confidence 999999873211 245566899999999999999755 2358
Q ss_pred EEEEEec---C--CCCCCCceEe--eCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC-C
Q 027478 54 TLAYTHQ---N--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (223)
Q Consensus 54 ~lg~~r~---~--~~~~~QP~~~--~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~-~ 119 (223)
+|||+|. . ...+.||+.+ .+++++++|||+|||+.+|+++| |+ +.+|+|++ +++|.+++.... +
T Consensus 68 ~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi--~~l~~~~~~~~~~e 145 (445)
T PRK08525 68 AIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENL--IHLIARSKKESLKD 145 (445)
T ss_pred EEeecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 9999992 2 2367999987 46789999999999999999988 44 78888987 789987753211 3
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------C--CC
Q 027478 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------A--VG 191 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~--~~ 191 (223)
++.+++++|+|+|||++++. ++++++||++|+|||||+..+++.++||||.+||.....+.++.++| + .+
T Consensus 146 a~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~ 223 (445)
T PRK08525 146 RIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGND 223 (445)
T ss_pred HHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCC
Confidence 45789999999999999985 78999999999999999986446799999999997766566777777 3 44
Q ss_pred CeEEeeC--CCCcc-----ccccCCcccccCce
Q 027478 192 GLRSFEN--PKNKI-----TAVPAAEEEIWGAT 217 (223)
Q Consensus 192 ~~~~~~~--~~~~~-----~~~~r~~s~~~g~~ 217 (223)
+++.+.. ...+. .|+.||||.|-|.+
T Consensus 224 ~~~~~~~~~~~~~~c~fe~iY~~rpds~~~g~~ 256 (445)
T PRK08525 224 EFESIQLFEPTPRICAFEYIYFARPDSIVFGKN 256 (445)
T ss_pred ceEEEEecCCCCccceeEeeeecCCCceECCEE
Confidence 6666432 22222 28999999999875
No 8
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.5e-35 Score=272.78 Aligned_cols=200 Identities=17% Similarity=0.154 Sum_probs=158.9
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (223)
||||||...... ....+..++.+|+|||+|+.++.. .+++
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~ 77 (475)
T PRK07631 11 ECGVFGIWGHEE-------------AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKA 77 (475)
T ss_pred CCcEEEEECCch-------------hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCE
Confidence 999999984211 134566889999999999998653 2568
Q ss_pred EEEEEec-----CCCCCCCceE--eeCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC-C
Q 027478 54 TLAYTHQ-----NESPLRQRSF--AVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (223)
Q Consensus 54 ~lg~~r~-----~~~~~~QP~~--~~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~-~ 119 (223)
+|||+|. ....+.||+. +.+++++++|||+|+|+++|+++| |+ +.+|+|++ +++|.+++.... +
T Consensus 78 gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi--~~Li~~~~~~~~~e 155 (475)
T PRK07631 78 AIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVL--AHLIKRSGAPTLKE 155 (475)
T ss_pred EEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 9999992 2235799996 345789999999999999999988 44 78888887 799998763221 4
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCe
Q 027478 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGL 193 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~ 193 (223)
++.+++++|+|+|||++++. ++++++|||+|+|||||+.. ++.++||||.+||...+.+.++.++| +.+++
T Consensus 156 ai~~~~~~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~ 232 (475)
T PRK07631 156 QIKNALSMLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGM 232 (475)
T ss_pred HHHHHHHhCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcE
Confidence 56789999999999999995 68999999999999999998 56799999999998887777888888 55677
Q ss_pred EEeeCCC--C-ccc-----cccCCcccccCceE
Q 027478 194 RSFENPK--N-KIT-----AVPAAEEEIWGATF 218 (223)
Q Consensus 194 ~~~~~~~--~-~~~-----~~~r~~s~~~g~~~ 218 (223)
..+...+ . +.+ |+.||||.|-|.+=
T Consensus 233 ~~~~~~~~~~~~~C~fE~iYfarpdS~~~g~~v 265 (475)
T PRK07631 233 RSERFAPNQNRSICSMEYIYFARPDSNVDGINV 265 (475)
T ss_pred EEEecCCCCCcccceEEEEEeecCCcccCCeEH
Confidence 7765421 2 222 89999999999763
No 9
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=1e-35 Score=283.27 Aligned_cols=159 Identities=23% Similarity=0.384 Sum_probs=138.2
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEe---cCC-CCCCCceEeeCCcE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNE-SPLRQRSFAVKDEI 76 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lg~~r---~~~-~~~~QP~~~~~~~~ 76 (223)
||||+|.....+. ......+..|+++|+|||||+.++|..++++|||+| .+. ..+.||+.+.++++
T Consensus 1 McGI~G~~~~~~~----------~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~ 70 (589)
T TIGR03104 1 MCGICGEIRFDGQ----------APDVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGL 70 (589)
T ss_pred CcEEEEEEecCCC----------cchHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCE
Confidence 9999998621111 012467889999999999999999999999999999 232 35799999888889
Q ss_pred EEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcC
Q 027478 77 FCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQ 150 (223)
Q Consensus 77 ~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~ 150 (223)
+++|||||||+.+|+++| |+ +.+|+|++ +++|++|| .+++++|+|+|||++||..+++++++|||
T Consensus 71 ~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evi--l~~y~~~G-------~~~~~~l~G~fa~~i~d~~~~~l~laRD~ 141 (589)
T TIGR03104 71 ALVFNGCIYNYRELRAELEALGYRFFSDGDTEVI--LKAYHAWG-------RDCVSRFNGMFAFAIWERDSGRLLLARDR 141 (589)
T ss_pred EEEECCEecCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHH-------HHHHHHhhcceEEEEEeCCCCEEEEEecC
Confidence 999999999999999987 44 67888887 79999999 89999999999999999999999999999
Q ss_pred CCCccEEEEEecCCEEEEEechhhHhhhc
Q 027478 151 FGKVPLYWGITADGHVAFADDADLLKGAC 179 (223)
Q Consensus 151 ~G~~PLyy~~~~dg~~~faSe~~aL~~~~ 179 (223)
+|+|||||+.. ++.++||||+++|...+
T Consensus 142 ~G~kPLyy~~~-~~~~~faSe~kaLl~~~ 169 (589)
T TIGR03104 142 LGIKPLYYAED-AGRLRFASSLPALLAAG 169 (589)
T ss_pred CCCCCeEEEEe-CCEEEEEeCHHHHHhCC
Confidence 99999999987 57899999999998754
No 10
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.4e-34 Score=268.40 Aligned_cols=203 Identities=14% Similarity=0.145 Sum_probs=159.7
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC----------------------------Cc
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DN 52 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----------------------------~~ 52 (223)
||||||...... ....+..++.+|+|||+|+.++... ++
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~ 77 (484)
T PRK07272 11 ECGVFGIWGHPD-------------AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQ 77 (484)
T ss_pred cCeEEEEECCcc-------------HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCc
Confidence 999999974221 2455678999999999999987541 35
Q ss_pred EEEEEEec---C--CCCCCCceEe--eCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC-
Q 027478 53 VTLAYTHQ---N--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP- 118 (223)
Q Consensus 53 ~~lg~~r~---~--~~~~~QP~~~--~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~- 118 (223)
++|||+|. . ...+.||+.. .+++++++|||+|+|+.+||++| |+ +.+|+|++ ++++.+++....
T Consensus 78 ~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI--~~Li~~~~~~~~~ 155 (484)
T PRK07272 78 AAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEIL--MHLIRRSHNPTFM 155 (484)
T ss_pred EEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHHHcCCCHH
Confidence 89999992 2 2357999986 35789999999999999999998 43 78899987 789887642211
Q ss_pred CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCC
Q 027478 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGG 192 (223)
Q Consensus 119 ~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~ 192 (223)
+++.+++++|+|+|||++++. ++|+++|||+|+|||||+..+++.++||||.+||.....+.++.++| +.++
T Consensus 156 eai~~~~~~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g 233 (484)
T PRK07272 156 GKLKEALNTVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEG 233 (484)
T ss_pred HHHHHHHHHccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCc
Confidence 356789999999999999985 78999999999999999986456799999999998877666777877 5567
Q ss_pred eEEeeC--CCC-ccc-----cccCCcccccCceEEe
Q 027478 193 LRSFEN--PKN-KIT-----AVPAAEEEIWGATFKV 220 (223)
Q Consensus 193 ~~~~~~--~~~-~~~-----~~~r~~s~~~g~~~~~ 220 (223)
+..+.. +.. ..+ |+.||||.|-|.+|+.
T Consensus 234 ~~~~~~~~~~~~~~C~FE~vYfarpds~i~g~~v~~ 269 (484)
T PRK07272 234 IQYDSYTTDTQLAICSMEYIYFARPDSTIHGVNVHT 269 (484)
T ss_pred eEEEEecCCccccccchhhhhhcCCccccCCEEHHH
Confidence 766533 222 122 8999999999988753
No 11
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=8e-35 Score=239.43 Aligned_cols=157 Identities=19% Similarity=0.267 Sum_probs=127.9
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC----CcEEEEEEe---cCCCCCCCceEeeC
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----DNVTLAYTH---QNESPLRQRSFAVK 73 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----~~~~lg~~r---~~~~~~~QP~~~~~ 73 (223)
||||++....... . ......+.+|+++|+|||||+.+.+.. ..+.++|+| .+...+.||+...+
T Consensus 1 MCGI~~~~~~~~~-------~--~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~ 71 (181)
T cd03766 1 MCGILCSVSPSGP-------H--INSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQS 71 (181)
T ss_pred CCcEEEEEeCCCC-------c--ccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCC
Confidence 9999998731111 0 002356789999999999999988775 458999998 23346799999877
Q ss_pred CcEEEEEEEEEecchhhHHhcCCCCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCC
Q 027478 74 DEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (223)
Q Consensus 74 ~~~~lv~nGeI~N~~~L~~~lg~~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~ 153 (223)
++++++|||+|||+.+|++ +.+|+|++ +++|++|+.. ..++.+++++|+|+|||++||..+++++++|||+|+
T Consensus 72 ~~~~lv~NGeIyN~~~l~~----s~sDtEvi--~~l~~~~g~~-~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~ 144 (181)
T cd03766 72 TGNVLQWNGELYNIDGVED----EENDTEVI--FELLANCSSE-SQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGR 144 (181)
T ss_pred CCEEEEECCEEECcccccC----CCCHHHHH--HHHHHHHhhh-HHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCC
Confidence 7899999999999999976 67898987 7999988731 123458999999999999999989999999999999
Q ss_pred ccEEEEEec-CCEEEEEechh
Q 027478 154 VPLYWGITA-DGHVAFADDAD 173 (223)
Q Consensus 154 ~PLyy~~~~-dg~~~faSe~~ 173 (223)
|||||+... ++.++|||+..
T Consensus 145 rPL~y~~~~~~~~l~~aS~~~ 165 (181)
T cd03766 145 RSLLYKLDPNGFELSISSVSG 165 (181)
T ss_pred cCcEEEeeCCCCcEEEEEccC
Confidence 999999974 57899999965
No 12
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=1.9e-34 Score=276.38 Aligned_cols=161 Identities=25% Similarity=0.408 Sum_probs=138.3
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEe---cCCCCCCCceEeeCCcEE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lg~~r---~~~~~~~QP~~~~~~~~~ 77 (223)
||||+|.....+. .+.....+..|+++|.|||||..++|..++++|||+| .+...+.||+++.+++++
T Consensus 1 McGI~G~~~~~~~---------~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~ 71 (628)
T TIGR03108 1 MCGITGIFDLTGQ---------RPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVV 71 (628)
T ss_pred CCEEEEEEECCCC---------ccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEE
Confidence 9999998621111 0112356789999999999999999999999999999 333467999998888999
Q ss_pred EEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCC
Q 027478 78 CLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQF 151 (223)
Q Consensus 78 lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~ 151 (223)
++|||+|||+.+|+++| |+ +.+|+|++ +++|++|| .+++++|+|+|||++||...++++++||++
T Consensus 72 lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi--~~~~~~~g-------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~ 142 (628)
T TIGR03108 72 VVFNGEIYNFQELVAELQALGHVFRTRSDTEVI--VHAWEEWG-------EACVERFRGMFAFALWDRNQETLFLARDRL 142 (628)
T ss_pred EEECCeECCHHHHHHHHHhcCCccCCCChHHHH--HHHHHHHH-------HHHHHHcCCCEEEEEEECCCCEEEEEECCC
Confidence 99999999999999987 43 67888887 79999999 899999999999999999999999999999
Q ss_pred CCccEEEEEecCCEEEEEechhhHhhhc
Q 027478 152 GKVPLYWGITADGHVAFADDADLLKGAC 179 (223)
Q Consensus 152 G~~PLyy~~~~dg~~~faSe~~aL~~~~ 179 (223)
|++||||+...++.++||||+++|...+
T Consensus 143 G~~PLyy~~~~~~~~~faSe~~al~~~~ 170 (628)
T TIGR03108 143 GIKPLYYALLADGWFIFGSELKALTAHP 170 (628)
T ss_pred CCcceEEEEeCCCEEEEEecHHHHHhCC
Confidence 9999999975456799999999998764
No 13
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=6.9e-34 Score=263.30 Aligned_cols=200 Identities=16% Similarity=0.164 Sum_probs=158.1
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (223)
||||||...... ....+..++.+|+|||+|+.++.. .+++
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~ 77 (471)
T PRK06781 11 ECGVFGIWGHEN-------------AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKS 77 (471)
T ss_pred cCeEEEEEcCcc-------------HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCE
Confidence 999999873211 134566899999999999998752 2457
Q ss_pred EEEEEec-----CCCCCCCceEe--eCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC-C
Q 027478 54 TLAYTHQ-----NESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (223)
Q Consensus 54 ~lg~~r~-----~~~~~~QP~~~--~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~-~ 119 (223)
+|||+|. ....+.||+.. .+++++++|||+|+|+++|+++| |+ +.+|+|++ ++++.+++.... +
T Consensus 78 ~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI--~~Li~~~~~~~~~e 155 (471)
T PRK06781 78 AIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVL--LHLIKRSTKDSLIE 155 (471)
T ss_pred EEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 8999992 12367899964 35789999999999999999998 43 78888887 789987753222 4
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCe
Q 027478 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGL 193 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~ 193 (223)
++.+++++|+|+||+++++. ++++++||++|+|||||+.. ++.++||||.+||.....+.++.+|| +.+++
T Consensus 156 ai~~~~~~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~ 232 (471)
T PRK06781 156 SVKEALNKVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGI 232 (471)
T ss_pred HHHHHHHhCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCce
Confidence 56889999999999999995 78999999999999999998 56799999999998876666778888 56677
Q ss_pred EEeeCCC--C-ccc-----cccCCcccccCceE
Q 027478 194 RSFENPK--N-KIT-----AVPAAEEEIWGATF 218 (223)
Q Consensus 194 ~~~~~~~--~-~~~-----~~~r~~s~~~g~~~ 218 (223)
..+..+. . ..+ |+.||||.|-|.+=
T Consensus 233 ~~~~~~~~~~~~~C~fE~vYfarpds~~~g~~v 265 (471)
T PRK06781 233 HVDRFTNEVDHAICSMEYIYFARPDSNIAGINV 265 (471)
T ss_pred EEEecCcCcccccceEEEEEecCCCceeCCEEH
Confidence 7765432 1 222 89999999999763
No 14
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=7.9e-34 Score=239.64 Aligned_cols=159 Identities=25% Similarity=0.421 Sum_probs=137.0
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEec---CCCCCCCceEeeCCcEEE
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIFC 78 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lg~~r~---~~~~~~QP~~~~~~~~~l 78 (223)
|||+|...... .......+..|+.+|+|||||+.+++..++++|||+|. +...+.||+...++++++
T Consensus 1 cGI~g~~~~~~----------~~~~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~ 70 (220)
T cd00712 1 CGIAGIIGLDG----------ASVDRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVL 70 (220)
T ss_pred CeEEEEEeCCC----------CcchHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEE
Confidence 89998863111 01135678899999999999999999999999999992 223689999987789999
Q ss_pred EEEEEEecchhhHHhcC---C---CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCC
Q 027478 79 LFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (223)
Q Consensus 79 v~nGeI~N~~~L~~~lg---~---~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G 152 (223)
++||+|||+.+|+++|+ . +.+|+|++ +++|++|| .+++++|+|+||+++||.++++++++||++|
T Consensus 71 ~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e~l--~~~~~~~g-------~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G 141 (220)
T cd00712 71 VFNGEIYNYRELRAELEALGHRFRTHSDTEVI--LHLYEEWG-------EDCLERLNGMFAFALWDKRKRRLFLARDRFG 141 (220)
T ss_pred EEEEEEeCHHHHHHHHHhcCCcCCCCChHHHH--HHHHHHHh-------HHHHHHhhheEEEEEEECCCCEEEEEECCCC
Confidence 99999999999999883 2 66788876 79999998 8999999999999999998999999999999
Q ss_pred CccEEEEEecCCEEEEEechhhHhhhcc
Q 027478 153 KVPLYWGITADGHVAFADDADLLKGACG 180 (223)
Q Consensus 153 ~~PLyy~~~~dg~~~faSe~~aL~~~~~ 180 (223)
.+||||+.. ++.++||||+++|..++.
T Consensus 142 ~~pLy~~~~-~~~~~~aSe~~~l~~~~~ 168 (220)
T cd00712 142 IKPLYYGRD-GGGLAFASELKALLALPG 168 (220)
T ss_pred CEeeEEEEE-CCEEEEEcchHHHHhcCC
Confidence 999999998 478999999999988765
No 15
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.6e-34 Score=263.06 Aligned_cols=199 Identities=14% Similarity=0.095 Sum_probs=155.8
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE--------------------------CCcEE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--------------------------GDNVT 54 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~--------------------------~~~~~ 54 (223)
||||||...... ....+..++.+|+|||+|+.++.. .++++
T Consensus 19 mCGI~G~~~~~~-------------~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~g 85 (474)
T PRK06388 19 DCAVVGFKGGIN-------------AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVG 85 (474)
T ss_pred CCeEEEEECCcc-------------hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEE
Confidence 999999873211 245677999999999999999764 23579
Q ss_pred EEEEec---C--CCCCCCceEe--eCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhh-ccCC-C
Q 027478 55 LAYTHQ---N--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALR-DRAP-Y 119 (223)
Q Consensus 55 lg~~r~---~--~~~~~QP~~~--~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g-~~g~-~ 119 (223)
|||+|. . ...+.||+.. ..++++++|||+|+|+++|+++| |+ +.+|+|++ +++|.+.- ..+. +
T Consensus 86 IGH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi--~~li~~~~~~~~~~e 163 (474)
T PRK06388 86 VGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVM--LAELSRNISKYGLKE 163 (474)
T ss_pred EeeeeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHH--HHHHHHHHhcCCHHH
Confidence 999992 2 2367999973 35789999999999999999998 44 78899987 67875321 1122 3
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCe
Q 027478 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGL 193 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~ 193 (223)
++.+++++|+|+|||++++. ++|+++||++|+|||||+.. ++.++||||.+||.....+.++.++| +.+++
T Consensus 164 ai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~ 240 (474)
T PRK06388 164 GFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGY 240 (474)
T ss_pred HHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCce
Confidence 56789999999999999974 78999999999999999997 56799999999999987767888877 55666
Q ss_pred EEeeCCC-C--ccc-----cccCCcccccCce
Q 027478 194 RSFENPK-N--KIT-----AVPAAEEEIWGAT 217 (223)
Q Consensus 194 ~~~~~~~-~--~~~-----~~~r~~s~~~g~~ 217 (223)
.++.... . +.+ |+.||||.|-|.+
T Consensus 241 ~~~~~~~~~~~~~C~fE~iYfarpds~~~g~~ 272 (474)
T PRK06388 241 KTIFKLDGDKVAHCMFEYVYFSRPDSIIDGIN 272 (474)
T ss_pred EEEEecCCCccccceEEEEeecCCccccCCcH
Confidence 5554421 1 222 8999999998875
No 16
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.2e-33 Score=261.03 Aligned_cols=201 Identities=17% Similarity=0.191 Sum_probs=155.7
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (223)
||||||...... .....+..++.+|+|||+|+.++.. .+++
T Consensus 33 mCGI~Gi~~~~~------------~~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i 100 (500)
T PRK07349 33 ACGVFGVYAPGE------------EVAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDL 100 (500)
T ss_pred CCeEEEEECCCc------------CHHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCE
Confidence 999999973110 1245556899999999999999743 2357
Q ss_pred EEEEEecC-----CCCCCCceEee--CCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC--
Q 027478 54 TLAYTHQN-----ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-- 118 (223)
Q Consensus 54 ~lg~~r~~-----~~~~~QP~~~~--~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~-- 118 (223)
+|||+|.. ...+.||+... .++++++|||+|+|+.+|+++| |+ +.+|+|++ +++|.+....+.
T Consensus 101 ~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi--~~li~~~~~~~~~~ 178 (500)
T PRK07349 101 AVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMI--AFAIAQAVDAGKDW 178 (500)
T ss_pred EEEEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHHhcCCCH
Confidence 99999921 23579999864 4789999999999999999998 43 78899987 688865322221
Q ss_pred -CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEec---CCEEEEEechhhHhhhccccccccCC------
Q 027478 119 -YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA---DGHVAFADDADLLKGACGKSLASFPQ------ 188 (223)
Q Consensus 119 -~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~---dg~~~faSe~~aL~~~~~~~~~~~P~------ 188 (223)
+++.+++++|+|+|||++++. ++|+++||++|+|||||+... ++.++||||.+||.....+.++.++|
T Consensus 179 ~eai~~~~~~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i 256 (500)
T PRK07349 179 LEAAISAFQRCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWI 256 (500)
T ss_pred HHHHHHHHHHhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEE
Confidence 356789999999999999874 789999999999999999852 24799999999998776666888877
Q ss_pred CCCCeEEeeC-C--CCccc-----cccCCcccccCce
Q 027478 189 AVGGLRSFEN-P--KNKIT-----AVPAAEEEIWGAT 217 (223)
Q Consensus 189 ~~~~~~~~~~-~--~~~~~-----~~~r~~s~~~g~~ 217 (223)
+.+++..+.. + ..+.+ |+.||||.|-|.+
T Consensus 257 ~~~g~~~~~~~~~~~~~~C~fE~vYfarpdS~~~g~~ 293 (500)
T PRK07349 257 TEGGLSSFHWAQEPQRKLCIFEMIYFARPDSRMHGES 293 (500)
T ss_pred ECCceEEEecccCCCcceeEEEeeeccCCCCccCCeE
Confidence 6667777653 1 12222 8999999999976
No 17
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.1e-33 Score=259.59 Aligned_cols=199 Identities=17% Similarity=0.183 Sum_probs=155.3
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE----------------------------CCc
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV----------------------------GDN 52 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~----------------------------~~~ 52 (223)
||||||...... ....+..++.+|+|||+|+.++.. .++
T Consensus 21 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~ 87 (479)
T PRK09123 21 ECGVFGILGHPD-------------AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGN 87 (479)
T ss_pred cCeEEEEEcCcc-------------hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCC
Confidence 999999973111 245667899999999999998654 134
Q ss_pred EEEEEEec---C--CCCCCCceEee--CCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC-
Q 027478 53 VTLAYTHQ---N--ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP- 118 (223)
Q Consensus 53 ~~lg~~r~---~--~~~~~QP~~~~--~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~- 118 (223)
++|||+|. . ...+.||+... +++++++|||+|+|+++|+++| |+ +.+|+|++ ++++.+++....
T Consensus 88 ~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi--~~Li~~~~~~~~~ 165 (479)
T PRK09123 88 RAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVI--LHLIARSRKASFL 165 (479)
T ss_pred EEEEEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHccCCHH
Confidence 79999992 2 23678999863 5789999999999999999998 43 78899987 688877642111
Q ss_pred CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCC
Q 027478 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGG 192 (223)
Q Consensus 119 ~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~ 192 (223)
+++.+++++|+|+||+++++. ++++++||++|+|||||+.. ++.++||||.+||.......++.+|| +.++
T Consensus 166 eai~~~~~~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g 242 (479)
T PRK09123 166 DRFIDALRQVEGAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDG 242 (479)
T ss_pred HHHHHHHHHhhcceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCC
Confidence 345789999999999999986 69999999999999999997 56799999999998765556777877 4445
Q ss_pred -eEEeeC---CCCccc-----cccCCcccccCce
Q 027478 193 -LRSFEN---PKNKIT-----AVPAAEEEIWGAT 217 (223)
Q Consensus 193 -~~~~~~---~~~~~~-----~~~r~~s~~~g~~ 217 (223)
++++.. ++...+ |+.||||.|-|.+
T Consensus 243 ~~~~~~~~~~~~~~~C~FE~VYfarPdS~~~g~~ 276 (479)
T PRK09123 243 SIESIKPFPPQPARFCIFEYVYFARPDSVVGGRS 276 (479)
T ss_pred cEEEEEecCCCCCCCChhheEEecCCCceECCeE
Confidence 766543 222222 8899999999976
No 18
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=1.8e-33 Score=261.15 Aligned_cols=143 Identities=26% Similarity=0.415 Sum_probs=129.6
Q ss_pred cchHHHHHHHhHcCCCCCcceE-ECCcEEEEEEe---cCCCCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---
Q 027478 27 KTTSTALVDRFLQTNSSAVSVQ-VGDNVTLAYTH---QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL--- 96 (223)
Q Consensus 27 ~~~~~~m~~~l~~RGpd~~~~~-~~~~~~lg~~r---~~~~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~--- 96 (223)
+..+..|+++|+|||||+.++| ..++++|||+| .+...+.||+.+.+++++++|||||||+.+|+++| |+
T Consensus 15 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~ 94 (467)
T TIGR01536 15 DEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQ 94 (467)
T ss_pred HHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccC
Confidence 3568899999999999999999 88899999999 34445699999888899999999999999999988 33
Q ss_pred CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHh
Q 027478 97 AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLK 176 (223)
Q Consensus 97 ~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~ 176 (223)
+.+|+|++ +++|++|| .+++++|+|+|||++||..+++++++||++|.|||||+.. ++.++||||+++|.
T Consensus 95 ~~~D~e~i--l~~y~~~g-------~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~ 164 (467)
T TIGR01536 95 TDSDTEVI--LHLYEEWG-------EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALL 164 (467)
T ss_pred CCCHHHHH--HHHHHHHH-------HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHH
Confidence 67888887 79999999 8999999999999999999999999999999999999998 57899999999998
Q ss_pred hhc
Q 027478 177 GAC 179 (223)
Q Consensus 177 ~~~ 179 (223)
..+
T Consensus 165 ~~~ 167 (467)
T TIGR01536 165 AHP 167 (467)
T ss_pred hcc
Confidence 766
No 19
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.8e-33 Score=260.89 Aligned_cols=201 Identities=17% Similarity=0.176 Sum_probs=156.6
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (223)
||||||...... .....+..++.+|+|||+|+.++.. .+++
T Consensus 23 mCGI~Gi~~~~~------------~~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i 90 (510)
T PRK07847 23 ECGVFGVWAPGE------------EVAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHV 90 (510)
T ss_pred cCeEEEEECCCc------------CHHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcE
Confidence 999999873110 1244556899999999999998643 2347
Q ss_pred EEEEEecC-----CCCCCCceEee---CCcEEEEEEEEEecchhhHHhc---C-------C-CCCccHHHHHHHHHHHhh
Q 027478 54 TLAYTHQN-----ESPLRQRSFAV---KDEIFCLFEGALDNLGSLRQQY---G-------L-AKSANEVILVIEAYKALR 114 (223)
Q Consensus 54 ~lg~~r~~-----~~~~~QP~~~~---~~~~~lv~nGeI~N~~~L~~~l---g-------~-~~sd~e~~~~l~l~~~~g 114 (223)
+|||+|.. ...+.||+... .++++++|||+|+|+++|+++| | + +.+|+|++ ++++..++
T Consensus 91 ~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI--~~Li~~~~ 168 (510)
T PRK07847 91 AIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLV--TALLAHGA 168 (510)
T ss_pred EEEeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHH--HHHHHHhc
Confidence 99999921 12579999753 5789999999999999999988 4 2 67888887 68888775
Q ss_pred ccCC--CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC----
Q 027478 115 DRAP--YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ---- 188 (223)
Q Consensus 115 ~~g~--~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~---- 188 (223)
..+. +++.+++++|+|+|||+++|. ++|+++||++|+|||||+.. ++.++||||.++|.....+.++.+||
T Consensus 169 ~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv 245 (510)
T PRK07847 169 ADSTLEQAALELLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELI 245 (510)
T ss_pred cCCCHHHHHHHHHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEE
Confidence 3222 355689999999999999995 78999999999999999998 46799999999998875556888888
Q ss_pred --CCCCeEEeeCCC--Cccc-----cccCCcccccCceE
Q 027478 189 --AVGGLRSFENPK--NKIT-----AVPAAEEEIWGATF 218 (223)
Q Consensus 189 --~~~~~~~~~~~~--~~~~-----~~~r~~s~~~g~~~ 218 (223)
+.++++.+.... .+.+ |+.||||.|-|.+=
T Consensus 246 ~I~~~gv~~~~~~~~~~~~C~fE~vYfarpdS~~~g~~v 284 (510)
T PRK07847 246 AIDADGLRSTRFAEPTPKGCVFEYVYLARPDTTIAGRSV 284 (510)
T ss_pred EEECCceEEEeccCCCCCCCeEEEEEecCCcceeCCeEH
Confidence 566776654322 2223 89999999999763
No 20
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.2e-33 Score=254.42 Aligned_cols=195 Identities=18% Similarity=0.223 Sum_probs=153.1
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE--------------------------CCcEE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--------------------------GDNVT 54 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~--------------------------~~~~~ 54 (223)
||||||... .. ....+..++.+|+|||+|+.++.. .++++
T Consensus 4 ~CGI~G~~~-~~-------------~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~ 69 (442)
T PRK08341 4 KCGIFAAYS-EN-------------APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLA 69 (442)
T ss_pred ccEEEEEEC-CC-------------cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEE
Confidence 899999973 11 245677999999999999999743 35689
Q ss_pred EEEEe---cCCCCCCCceEee--CCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHH----HHhhccCCC
Q 027478 55 LAYTH---QNESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAY----KALRDRAPY 119 (223)
Q Consensus 55 lg~~r---~~~~~~~QP~~~~--~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~----~~~g~~g~~ 119 (223)
|||+| .....+.||+... +++++++|||+|+|+++|+++| |+ +.+|+|++ ++++ .++++ -.+
T Consensus 70 IGH~R~sT~G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI--~~li~~~~~~~~~-~~~ 146 (442)
T PRK08341 70 IGHVRYSTSGSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELI--GISFLWHYSETGD-EFE 146 (442)
T ss_pred EEEeeccccCCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHH--HHHHHHHHHhcCC-HHH
Confidence 99999 3344679999764 4689999999999999999998 43 78999987 4444 23221 013
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCe
Q 027478 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGL 193 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~ 193 (223)
++.+++++|+|+|||++++. ++++++||++|+|||||+.. ++ ++||||.+||...+. .++.+|| +.+++
T Consensus 147 ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~-~~-~~~ASE~~Al~~~~~-~v~~l~PGeiv~i~~~g~ 221 (442)
T PRK08341 147 AMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG-DG-HYFASEDSALRMFVN-EIRDVFPGEVFVVSEGEV 221 (442)
T ss_pred HHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC-CE-EEEEeCcHHHHhhCC-eEEEeCCCEEEEEECCce
Confidence 56788999999999999985 78999999999999999984 44 999999999998875 5888887 66777
Q ss_pred EEeeCCCCc--c-----ccccCCcccccCce
Q 027478 194 RSFENPKNK--I-----TAVPAAEEEIWGAT 217 (223)
Q Consensus 194 ~~~~~~~~~--~-----~~~~r~~s~~~g~~ 217 (223)
+++.....+ . .|++||||.|-|.+
T Consensus 222 ~~~~~~~~~~~~C~fe~iYfarpds~~~g~~ 252 (442)
T PRK08341 222 ESKVLAREKHHHCVFEYIYFARPDSVIDGVS 252 (442)
T ss_pred EEEeeccCCCccceEEEEEecCCccccCCcC
Confidence 765432222 2 28999999999974
No 21
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-34 Score=256.62 Aligned_cols=185 Identities=25% Similarity=0.382 Sum_probs=162.3
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEe---cCCCCCCCceEeeCCcEE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lg~~r---~~~~~~~QP~~~~~~~~~ 77 (223)
|||||+-..+.-|+. .+....++-..++|||||+++..+....-|+|.| .+...+.||+...++.++
T Consensus 1 MCGI~Av~~~~~~~~----------~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~ 70 (543)
T KOG0571|consen 1 MCGILAVLGHEDSEA----------KKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYV 70 (543)
T ss_pred CCceeeeecccchhh----------cChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEE
Confidence 999999986433422 2445567888999999999998887777999999 455678999999888888
Q ss_pred EEEEEEEecchhhHHhcC-C---CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCC
Q 027478 78 CLFEGALDNLGSLRQQYG-L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (223)
Q Consensus 78 lv~nGeI~N~~~L~~~lg-~---~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~ 153 (223)
+..||||||+.+||+.+. + +.+|+|+| +++|.+.|. .++...|+|+|||+++|.+.++++++||++|+
T Consensus 71 ~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvI--i~lY~khg~------~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv 142 (543)
T KOG0571|consen 71 VTVNGEIYNHKKLREHCKDFEFQTGSDCEVI--IHLYEKHGG------EQAICMLDGVFAFVLLDTKDDKVVAARDPIGV 142 (543)
T ss_pred EEECceeccHHHHHHHhhhcccccCCCceee--eehHhhcCc------hhHHHHhhhheEEEEecCCCCeEEeccCCcCc
Confidence 889999999999998874 3 88999998 799999852 79999999999999999999999999999999
Q ss_pred ccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCeEEeeCCCCccc
Q 027478 154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGLRSFENPKNKIT 204 (223)
Q Consensus 154 ~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~~~~~~~~~~~~ 204 (223)
+||||++..++.++||||.++|...|++ +..||| .++++++|.+|.|.+.
T Consensus 143 ~~lY~g~~~~gs~~~aSe~k~l~d~C~~-i~~fpPgh~y~~~~~~~~r~f~p~w~~~ 198 (543)
T KOG0571|consen 143 TPLYYGWDSDGSVYFASEMKCLEDDCEK-IESFPPGHYYTSKTGKLTRYFNPEWFDE 198 (543)
T ss_pred eeeEEEecCCCcEEEeeehhhhhhhhhc-eeecCCcceeecccccccCCCCchhhhc
Confidence 9999999878899999999999999976 889999 7888999999999854
No 22
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.5e-32 Score=254.78 Aligned_cols=201 Identities=14% Similarity=0.166 Sum_probs=158.1
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (223)
||||||-....+. .....+..++.+|+|||+|+.++.. .+++
T Consensus 14 mCGI~Gi~~~~~~-----------~~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~ 82 (469)
T PRK05793 14 ECGVFGVFSKNNI-----------DVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNS 82 (469)
T ss_pred CCeEEEEEcCCCc-----------cHHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcE
Confidence 9999999742110 0134556799999999999998753 3458
Q ss_pred EEEEEec-----CCCCCCCceEee--CCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC-C
Q 027478 54 TLAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (223)
Q Consensus 54 ~lg~~r~-----~~~~~~QP~~~~--~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~-~ 119 (223)
+|||+|. ....+.||+... +++++++|||+|+|+++|+++| |+ +.+|+|++ ++++.+++..+. +
T Consensus 83 ~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi--~~li~~~~~~~~~~ 160 (469)
T PRK05793 83 AIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVI--LNLIARSAKKGLEK 160 (469)
T ss_pred EEEEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHccCCHHH
Confidence 9999992 123579999864 5789999999999999999988 43 78899987 688887753222 4
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCe
Q 027478 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGL 193 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~ 193 (223)
++.+++++|+|+||+++++. ++++++||++|+|||||+.. ++.++||||.++|.....+.++.+|| +.+++
T Consensus 161 ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~ 237 (469)
T PRK05793 161 ALVDAIQAIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGI 237 (469)
T ss_pred HHHHHHHHhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCce
Confidence 56789999999999999985 78999999999999999998 56799999999998876666778887 55677
Q ss_pred EEeeCCC--C-ccc-----cccCCcccccCce
Q 027478 194 RSFENPK--N-KIT-----AVPAAEEEIWGAT 217 (223)
Q Consensus 194 ~~~~~~~--~-~~~-----~~~r~~s~~~g~~ 217 (223)
..+.... . ..+ |+.||||.|-|.+
T Consensus 238 ~~~~~~~~~~~~~C~fe~vYfarpds~~~g~~ 269 (469)
T PRK05793 238 KSIKFAEKTKCQTCAFEYIYFARPDSVIDGIS 269 (469)
T ss_pred EEEecCcCccccccEEEEEEeccCCcccCCeE
Confidence 7665422 1 223 8999999999976
No 23
>PLN02440 amidophosphoribosyltransferase
Probab=100.00 E-value=3.9e-32 Score=252.59 Aligned_cols=200 Identities=16% Similarity=0.126 Sum_probs=153.8
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (223)
||||||...... ....+..|+.+|+|||+|+.++.. .+++
T Consensus 1 MCGI~Gi~~~~~-------------~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~ 67 (479)
T PLN02440 1 ECGVVGIFGDPE-------------ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDI 67 (479)
T ss_pred CceEEEEECCcc-------------HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcE
Confidence 999999973111 145677899999999999998754 4568
Q ss_pred EEEEEec-----CCCCCCCceEee--CCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC-C
Q 027478 54 TLAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (223)
Q Consensus 54 ~lg~~r~-----~~~~~~QP~~~~--~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~-~ 119 (223)
+|||+|. ....+.||+... +++++++|||+|+|+++|+++| |. +.+|+|++ +++|.++..... +
T Consensus 68 ~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi--~~li~~~~~~~~~~ 145 (479)
T PLN02440 68 AIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVL--LHLIAISKARPFFS 145 (479)
T ss_pred EEEEEeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhhhhhHHH
Confidence 9999992 124679999863 4679999999999999999988 33 77888887 688876532111 2
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCe
Q 027478 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGL 193 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~ 193 (223)
++.+++++|+|+||+++||. ++|+++||++|+|||||+..+++.++||||.++|.......++.++| +.+++
T Consensus 146 a~~~~~~~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g~ 223 (479)
T PLN02440 146 RIVDACEKLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDKG 223 (479)
T ss_pred HHHHHHHHhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCCc
Confidence 34789999999999999995 57999999999999999976456799999999999876667888877 55554
Q ss_pred EEee-C--CCC-cc-----ccccCCcccccCce
Q 027478 194 RSFE-N--PKN-KI-----TAVPAAEEEIWGAT 217 (223)
Q Consensus 194 ~~~~-~--~~~-~~-----~~~~r~~s~~~g~~ 217 (223)
.+.. . +.. .. .|+.|+||.|-|.+
T Consensus 224 ~~~~~~~~~~~~~~C~fe~vYf~~p~s~~~g~~ 256 (479)
T PLN02440 224 VSSQCLMPHPEPKPCIFEHIYFARPNSIVFGRS 256 (479)
T ss_pred EEEeeccCCCCcccceEEEEeecCCCccccCeE
Confidence 4332 2 122 22 28899999987754
No 24
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.5e-32 Score=254.22 Aligned_cols=203 Identities=17% Similarity=0.182 Sum_probs=155.9
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (223)
||||||...... ....+..|+.+|+|||||+.+++. .+++
T Consensus 1 MCGI~Gi~~~~~-------------~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~ 67 (501)
T PRK09246 1 MCGIVGIVGHSP-------------VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNM 67 (501)
T ss_pred CceEEEEEcCcC-------------HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCE
Confidence 999999974211 134567899999999999999876 4678
Q ss_pred EEEEEec-----CCCCCCCceEe-eCCcEEEEEEEEEecchhhHHhc----CC---CCCccHHHHHHHHHHHhhcc--C-
Q 027478 54 TLAYTHQ-----NESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY----GL---AKSANEVILVIEAYKALRDR--A- 117 (223)
Q Consensus 54 ~lg~~r~-----~~~~~~QP~~~-~~~~~~lv~nGeI~N~~~L~~~l----g~---~~sd~e~~~~l~l~~~~g~~--g- 117 (223)
+|||+|. ....+.||+.. ...+++++|||+|+|+++|+++| +. +.+|+|++ ++++.++... +
T Consensus 68 ~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi--~~li~~~l~~~~g~ 145 (501)
T PRK09246 68 GIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVL--LNVFAHELQKFRGL 145 (501)
T ss_pred EEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHH--HHHHHHHHHhcccc
Confidence 9999992 22368999974 34569999999999999999987 22 78999987 6888776321 1
Q ss_pred -------CCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEec---CCEEEEEechhhHhhhccccccccC
Q 027478 118 -------PYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA---DGHVAFADDADLLKGACGKSLASFP 187 (223)
Q Consensus 118 -------~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~---dg~~~faSe~~aL~~~~~~~~~~~P 187 (223)
.+++.+++++|+|+||++++.. .++++++||++|+|||||+..+ ++.++||||.+||.....+.++.+|
T Consensus 146 ~~~~~~l~eai~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~ 224 (501)
T PRK09246 146 PLTPEDIFAAVAAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVA 224 (501)
T ss_pred ccCccCHHHHHHHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeC
Confidence 1345688999999999998853 4679999999999999999863 3479999999999988777788898
Q ss_pred C------CCCC-eEEee--C-CCCccc-----cccCCcccccCce-EE
Q 027478 188 Q------AVGG-LRSFE--N-PKNKIT-----AVPAAEEEIWGAT-FK 219 (223)
Q Consensus 188 ~------~~~~-~~~~~--~-~~~~~~-----~~~r~~s~~~g~~-~~ 219 (223)
| +.++ +.+.. . +++..+ |+.|+||.|-|.+ |.
T Consensus 225 PGeiv~i~~~g~~~~~~~~~~~~~~~c~fe~vY~~r~ds~i~g~~vy~ 272 (501)
T PRK09246 225 PGEAIYITEDGQLHTRQCAENPKLNPCIFEYVYFARPDSIIDGISVYK 272 (501)
T ss_pred CCeEEEEECCCcEehhhhcCCCCCcceEEEEEEcCCchhhccCeeHHh
Confidence 8 3344 43222 2 333333 8899999999987 54
No 25
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=3.4e-31 Score=228.11 Aligned_cols=195 Identities=15% Similarity=0.148 Sum_probs=151.6
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC---------------------------CcEE
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNVT 54 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~ 54 (223)
|||||..... ...+.+..|++.|+|||||+.++... +.++
T Consensus 1 Cgi~g~~~~~-------------~~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (252)
T cd00715 1 CGVFGIYGAE-------------DAARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIA 67 (252)
T ss_pred CEEEEEECCc-------------chHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEE
Confidence 9999988411 12456779999999999999997542 3468
Q ss_pred EEEEec---C--CCCCCCceEee--CCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccC-C-C
Q 027478 55 LAYTHQ---N--ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRA-P-Y 119 (223)
Q Consensus 55 lg~~r~---~--~~~~~QP~~~~--~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g-~-~ 119 (223)
|||+|. . ...+.||+... +++++++|||+|+|+++|+++| +. +.+|+|++ ++++.+|++++ . .
T Consensus 68 lgH~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi--~~l~~~~~~~~~~~~ 145 (252)
T cd00715 68 IGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVI--LHLIARSLAKDDLFE 145 (252)
T ss_pred EEEEEcccCCCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHH--HHHHHHhhccCCHHH
Confidence 999992 1 23579999863 4789999999999999999887 22 67888887 68998887431 1 3
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCe
Q 027478 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGL 193 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~ 193 (223)
++.+++++|+|.||++++|. ++++++||++|.+||||+...++.++||||.++|...+.+.+..+|| +.+++
T Consensus 146 al~~~~~~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~ 223 (252)
T cd00715 146 AIIDALERVKGAYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGL 223 (252)
T ss_pred HHHHHHHhccCceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCce
Confidence 45689999999999999997 89999999999999999997437899999999998865455788888 55565
Q ss_pred EEeeCC---CCccc-----cccCCcccc
Q 027478 194 RSFENP---KNKIT-----AVPAAEEEI 213 (223)
Q Consensus 194 ~~~~~~---~~~~~-----~~~r~~s~~ 213 (223)
..+... ..+.+ |+.||||+|
T Consensus 224 ~~~~~~~~~~~~~c~~e~~y~~~~~~~~ 251 (252)
T cd00715 224 ESSQRAPKPKPAPCIFEYVYFARPDSVI 251 (252)
T ss_pred EEEEecCCCCCCcceEEEEeecCCcccc
Confidence 555332 12233 889999986
No 26
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.98 E-value=1.2e-31 Score=226.02 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=132.1
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC---------------------------CcEE
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNVT 54 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~ 54 (223)
|||||...... ....+..|+.+++|||||+.+++.. +.++
T Consensus 1 CGI~G~~~~~~-------------~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (215)
T cd00714 1 CGIVGYIGKRE-------------AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVG 67 (215)
T ss_pred CEEEEEEcCcc-------------HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEE
Confidence 99999873110 1356778999999999999998763 4589
Q ss_pred EEEEec---CC--CCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC---Cc
Q 027478 55 LAYTHQ---NE--SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---YP 120 (223)
Q Consensus 55 lg~~r~---~~--~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~---~~ 120 (223)
|||+|. +. ..+.||+...+++++++|||+|||+++|+++| |+ +.+|+|++ +++|.+++..+. ++
T Consensus 68 igH~R~at~g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi--~~l~~~~~~~~~~~~~a 145 (215)
T cd00714 68 IGHTRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVI--AHLIEYYYDGGLDLLEA 145 (215)
T ss_pred EEEEEccCCCCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHHhcCCCHHHH
Confidence 999992 21 35789998766789999999999999999988 43 78899987 689988874332 35
Q ss_pred HHHHHhcccCceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccc
Q 027478 121 PNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGK 181 (223)
Q Consensus 121 ~~~~l~~L~G~fa~vi~d~~~-~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~ 181 (223)
+.++++.|+|+|||++||... ++++++|| .|||||+.. ++.++||||.++|..++.+
T Consensus 146 i~~~~~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~ 203 (215)
T cd00714 146 VKKALKRLEGAYALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRR 203 (215)
T ss_pred HHHHHHHhccceEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCE
Confidence 568999999999999999875 49999999 499999997 5679999999999998864
No 27
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.97 E-value=1.2e-30 Score=240.77 Aligned_cols=199 Identities=18% Similarity=0.153 Sum_probs=154.8
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcEE
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNVT 54 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~ 54 (223)
|||||...... .....+..|+.+|+|||+|+.++.. .++++
T Consensus 1 CGI~Gi~~~~~------------~~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~ 68 (442)
T TIGR01134 1 CGVVGIYSQEE------------DAASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVG 68 (442)
T ss_pred CEEEEEEcCCc------------cHHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEE
Confidence 99999863110 1245566899999999999999753 35689
Q ss_pred EEEEec---C--CCCCCCceEe-eCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccC-C--C
Q 027478 55 LAYTHQ---N--ESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRA-P--Y 119 (223)
Q Consensus 55 lg~~r~---~--~~~~~QP~~~-~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g-~--~ 119 (223)
|||+|. . ...+.||+.. ..++++++|||+|+|+++|+++| |. +.+|+|++ +++|.+++..+ . +
T Consensus 69 IgHvR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi--~~li~~~~~~~~~~~~ 146 (442)
T TIGR01134 69 IGHVRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVL--LHLLARERLEEDDLFE 146 (442)
T ss_pred EEEEEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhhcccCCHHH
Confidence 999992 1 2357999984 33569999999999999999888 33 67888887 78888765211 1 3
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCe
Q 027478 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGL 193 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~ 193 (223)
++.+++++|+|.||++++| .++++++||++|.|||||+.. ++.++||||.++|.....+.++.+|| +.+++
T Consensus 147 ai~~~~~~l~G~falvi~~--~~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~ 223 (442)
T TIGR01134 147 AIARVLKRVRGAYALVIMI--GDGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGL 223 (442)
T ss_pred HHHHHHHHhCccceEEEEE--CCEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcE
Confidence 5678999999999999997 479999999999999999997 56799999999998765566888888 66777
Q ss_pred EEeeCCCC--ccc-----cccCCcccccCce
Q 027478 194 RSFENPKN--KIT-----AVPAAEEEIWGAT 217 (223)
Q Consensus 194 ~~~~~~~~--~~~-----~~~r~~s~~~g~~ 217 (223)
+++..... +.+ |+.||||.|-|.+
T Consensus 224 ~~~~~~~~~~~~c~fe~vYfarpds~~~g~~ 254 (442)
T TIGR01134 224 ESRLFANTPRAPCIFEYVYFARPDSVIDGIS 254 (442)
T ss_pred EEEeccCCCCcceEEEEEEecCCcceECCeE
Confidence 77543221 222 8999999999875
No 28
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.97 E-value=6.7e-30 Score=244.06 Aligned_cols=177 Identities=18% Similarity=0.238 Sum_probs=142.9
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (223)
||||||...... ....+..|+.+|+|||||+.+++. .+++
T Consensus 1 MCGI~g~~~~~~-------------~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~ 67 (604)
T PRK00331 1 MCGIVGYVGQRN-------------AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTT 67 (604)
T ss_pred CcEEEEEEcCcc-------------HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcE
Confidence 999999973110 135677899999999999999875 3568
Q ss_pred EEEEEec---CC--CCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC---C
Q 027478 54 TLAYTHQ---NE--SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (223)
Q Consensus 54 ~lg~~r~---~~--~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~---~ 119 (223)
+|||+|. +. ..+.||+.+.+++++++|||+|||+++|+++| |+ +.+|+|++ +++|.++.+.|. +
T Consensus 68 ~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi--~~l~~~~~~~g~~~~~ 145 (604)
T PRK00331 68 GIGHTRWATHGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVI--AHLIEEELKEGGDLLE 145 (604)
T ss_pred EEEEEecCCCCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHH--HHHHHHHHhhCCCHHH
Confidence 9999992 21 35789998777889999999999999999988 44 78888887 689988754332 4
Q ss_pred cHHHHHhcccCceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCC
Q 027478 120 PPNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGG 192 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~-~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~ 192 (223)
++.+++++|+|+|||++||... ++++++||+ |||||+.. ++.++||||.++|..++.. +..+|| +.++
T Consensus 146 a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pg~~~~i~~~~ 220 (604)
T PRK00331 146 AVRKALKRLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRR-VIYLEDGEIAVLTRDG 220 (604)
T ss_pred HHHHHHHhccCeeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCE-EEEECCCeEEEEECCe
Confidence 5678999999999999999875 899999995 99999997 5679999999999998765 677777 4455
Q ss_pred eEEee
Q 027478 193 LRSFE 197 (223)
Q Consensus 193 ~~~~~ 197 (223)
++.+.
T Consensus 221 ~~~~~ 225 (604)
T PRK00331 221 VEIFD 225 (604)
T ss_pred EEEEe
Confidence 55554
No 29
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.96 E-value=9.1e-29 Score=212.85 Aligned_cols=161 Identities=19% Similarity=0.165 Sum_probs=126.3
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCC-CCcceEEC------------------------------
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNS-SAVSVQVG------------------------------ 50 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGp-d~~~~~~~------------------------------ 50 (223)
|||||......+ ......+..|+.+|+|||+ |+.++...
T Consensus 1 CGI~G~~~~~~~----------~~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~ 70 (249)
T cd01907 1 CGIFGIMSKDGE----------PFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRY 70 (249)
T ss_pred CcEEEEEecCCc----------cccHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhc
Confidence 999998742211 1135677899999999999 99997652
Q ss_pred ------CcEEEEEEecC-----CCCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHh
Q 027478 51 ------DNVTLAYTHQN-----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKAL 113 (223)
Q Consensus 51 ------~~~~lg~~r~~-----~~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~ 113 (223)
+.++|||+|.. ...+.||+.. ++++++|||+|+|+++|+++| |+ +.+|+|++ ++++...
T Consensus 71 ~~~~~~~~~~igH~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi--~~ll~~~ 146 (249)
T cd01907 71 DLEEYKGYHWIAHTRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVI--AYYLDLL 146 (249)
T ss_pred CchheEEEEEEEEEeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHH--HHHHHHH
Confidence 45899999932 1257999976 489999999999999999887 43 78899987 5777543
Q ss_pred hcc-CC--C-------------------cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEec
Q 027478 114 RDR-AP--Y-------------------PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADD 171 (223)
Q Consensus 114 g~~-g~--~-------------------~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe 171 (223)
... +. + ++..++++|+|+|||++++. ++++++|||+|.|||||+.. ++.++||||
T Consensus 147 ~~~~g~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE 223 (249)
T cd01907 147 LRKGGLPLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASE 223 (249)
T ss_pred HHhCCChHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEc
Confidence 211 11 1 22367899999999999985 67999999999999999998 567999999
Q ss_pred hhhHhhhc
Q 027478 172 ADLLKGAC 179 (223)
Q Consensus 172 ~~aL~~~~ 179 (223)
.++|...+
T Consensus 224 ~~al~~~~ 231 (249)
T cd01907 224 ECAIREIP 231 (249)
T ss_pred HHHHhccC
Confidence 99998875
No 30
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.96 E-value=1.2e-28 Score=235.48 Aligned_cols=176 Identities=18% Similarity=0.226 Sum_probs=141.6
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcEE
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNVT 54 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~ 54 (223)
|||+|...... ....+..|+.+|+|||||+.+++. .+.++
T Consensus 1 CGI~g~~~~~~-------------~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (607)
T TIGR01135 1 CGIVGYIGQRD-------------AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVG 67 (607)
T ss_pred CeEEEEECCcc-------------HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEE
Confidence 99999873111 135677999999999999999876 34579
Q ss_pred EEEEec---C--CCCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC---Cc
Q 027478 55 LAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---YP 120 (223)
Q Consensus 55 lg~~r~---~--~~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~---~~ 120 (223)
|||+|. + ...+.||+...+++++++|||+|||+++|+++| |+ +.+|+|++ +++|.++++.+. ++
T Consensus 68 igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi--~~l~~~~~~~~~~~~~a 145 (607)
T TIGR01135 68 IGHTRWATHGKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVI--AHLIEEYLREGGDLLEA 145 (607)
T ss_pred EEEeeccCCCCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHH--HHHHHHHHhcCCCHHHH
Confidence 999992 2 135789998777889999999999999999998 44 67888987 789998875332 45
Q ss_pred HHHHHhcccCceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCe
Q 027478 121 PNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGL 193 (223)
Q Consensus 121 ~~~~l~~L~G~fa~vi~d~~~-~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~ 193 (223)
+.+++++|+|+|||++||+.. ++++++||+ |||||+.. ++.++||||.++|...+.+ +..+|| +.+++
T Consensus 146 i~~~~~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~l~pg~~~~~~~~~~ 220 (607)
T TIGR01135 146 VQKALKQLRGAYALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRR-VIYLEDGDIAILTRDGV 220 (607)
T ss_pred HHHHHHHhcCceEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCE-EEEeCCCeEEEEECCee
Confidence 678999999999999999765 579999995 99999997 5679999999999998755 557777 55566
Q ss_pred EEee
Q 027478 194 RSFE 197 (223)
Q Consensus 194 ~~~~ 197 (223)
..+.
T Consensus 221 ~~~~ 224 (607)
T TIGR01135 221 RIYN 224 (607)
T ss_pred EEEe
Confidence 6554
No 31
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.96 E-value=2.7e-28 Score=220.28 Aligned_cols=203 Identities=19% Similarity=0.183 Sum_probs=157.2
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE-CC---------------------------c
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV-GD---------------------------N 52 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~-~~---------------------------~ 52 (223)
||||||-+.++. +. ..+..-..+-+|+|||.++.++.. ++ +
T Consensus 4 ~CGV~Gi~~~~~-~~----------a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~ 72 (470)
T COG0034 4 MCGVFGIWGHKD-NN----------AAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGN 72 (470)
T ss_pred cceEEEEecCCc-cc----------hHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCc
Confidence 999999985322 00 145666899999999999988743 22 3
Q ss_pred EEEEEEec-----CCCCCCCceEeeC--CcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhc-cCC
Q 027478 53 VTLAYTHQ-----NESPLRQRSFAVK--DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRD-RAP 118 (223)
Q Consensus 53 ~~lg~~r~-----~~~~~~QP~~~~~--~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~-~g~ 118 (223)
.+|||+|. ....+.||++... +.+.++|||+|.|..+||++| |. +.+|||++ ++++.+-.. .+.
T Consensus 73 ~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvl--l~l~a~~~~~~~~ 150 (470)
T COG0034 73 VGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVL--LHLLARELDEDDI 150 (470)
T ss_pred ceeeEeeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHH--HHHHHhhcccccH
Confidence 58999992 2236789998643 469999999999999999998 43 78899997 688876432 122
Q ss_pred -CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC--------C
Q 027478 119 -YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ--------A 189 (223)
Q Consensus 119 -~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~--------~ 189 (223)
+++.++++.+.|.||+++... ++|+++|||.|+|||.+|...||.++||||.+||..+..+.++.+.| +
T Consensus 151 ~~a~~~~~~~v~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~ 228 (470)
T COG0034 151 FEAVKEVLRRVKGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITID 228 (470)
T ss_pred HHHHHHHHhhcCCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEec
Confidence 456788999999999999986 59999999999999999997566799999999999998888898877 3
Q ss_pred CCCeEEeeCCCC---ccc-----cccCCcccccCceE
Q 027478 190 VGGLRSFENPKN---KIT-----AVPAAEEEIWGATF 218 (223)
Q Consensus 190 ~~~~~~~~~~~~---~~~-----~~~r~~s~~~g~~~ 218 (223)
..++.+..-... +.+ |++||||.|-|.+-
T Consensus 229 ~~g~~s~~~~~~~~~~~C~fEyVYFARPDS~Idg~sV 265 (470)
T COG0034 229 GDGLESKQVAEPPRRAPCSFEYVYFARPDSVIDGISV 265 (470)
T ss_pred CceeEEEeccCCCCCccceEEEEEeecCccccCCeeH
Confidence 333555533222 222 89999999999864
No 32
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.96 E-value=3.6e-28 Score=233.57 Aligned_cols=177 Identities=14% Similarity=0.230 Sum_probs=140.0
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE--C----------------------------
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--G---------------------------- 50 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~--~---------------------------- 50 (223)
||||||...... ....+..++.+|+|||+|+.|+.. +
T Consensus 24 MCGI~G~~~~~~-------------~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~ 90 (640)
T PTZ00295 24 CCGIVGYLGNED-------------ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLD 90 (640)
T ss_pred CCeEEEEEcCcc-------------hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhc
Confidence 999999873221 245667899999999999998755 1
Q ss_pred ----CcEEEEEEec---C--CCCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhc
Q 027478 51 ----DNVTLAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRD 115 (223)
Q Consensus 51 ----~~~~lg~~r~---~--~~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~ 115 (223)
++++|||+|. . ...+.||+...+++++++|||+|+|+++||++| |+ +.+|+|++ ++++...-.
T Consensus 91 ~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi--~~li~~~~~ 168 (640)
T PTZ00295 91 SHKNSTIGIAHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVI--ANLIGLELD 168 (640)
T ss_pred CCCCCcEEEEEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHH--HHHHHHHHh
Confidence 2359999992 2 235799998766889999999999999999988 44 78899987 677764322
Q ss_pred cCC---CcHHHHHhcccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC---
Q 027478 116 RAP---YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ--- 188 (223)
Q Consensus 116 ~g~---~~~~~~l~~L~G~fa~vi~d~~-~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~--- 188 (223)
.|. +++.+++++|+|+|||++||.. .++++++||+ |||||+.. ++.++||||.++|...+.+.+. ++|
T Consensus 169 ~g~~~~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~~~~-l~pGei 243 (640)
T PTZ00295 169 QGEDFQEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNEYIS-LKDGEI 243 (640)
T ss_pred cCCCHHHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcEEEE-eCCCeE
Confidence 221 4567899999999999999976 5899999996 99999997 4679999999999998876444 666
Q ss_pred ---CCCCeEEee
Q 027478 189 ---AVGGLRSFE 197 (223)
Q Consensus 189 ---~~~~~~~~~ 197 (223)
+.++++.|.
T Consensus 244 ~~i~~~~~~~~~ 255 (640)
T PTZ00295 244 AELSLENVNDLY 255 (640)
T ss_pred EEEECCeEEEEe
Confidence 566777776
No 33
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.96 E-value=2.6e-27 Score=197.72 Aligned_cols=156 Identities=26% Similarity=0.376 Sum_probs=129.0
Q ss_pred HHHHHHhHcCCCCCcceEECC---------------------------cEEEEEEec---C--CCCCCCceEeeCCcEEE
Q 027478 31 TALVDRFLQTNSSAVSVQVGD---------------------------NVTLAYTHQ---N--ESPLRQRSFAVKDEIFC 78 (223)
Q Consensus 31 ~~m~~~l~~RGpd~~~~~~~~---------------------------~~~lg~~r~---~--~~~~~QP~~~~~~~~~l 78 (223)
..|+..+.+||||+.+++..+ .++|||+|. . ...+.||+....+++++
T Consensus 21 ~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~~~~~~~~~ 100 (220)
T cd00352 21 LRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIAL 100 (220)
T ss_pred HHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeecCCCCCCCCCCcCcCCCCEEE
Confidence 479999999999999976543 689999992 1 24679999876568999
Q ss_pred EEEEEEecchhhHHhcC---C---CCCccHHHHHHHHHHHhhccCC--CcHHHHHhcccCceEEEEEECCCCEEEEEEcC
Q 027478 79 LFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAP--YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQ 150 (223)
Q Consensus 79 v~nGeI~N~~~L~~~lg---~---~~sd~e~~~~l~l~~~~g~~g~--~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~ 150 (223)
+|||+|+|+.+|++++. . ..+|+|++ +++|.+|+..+. .++.+++++++|.|+|+++|..+++++++||+
T Consensus 101 ~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd~ 178 (220)
T cd00352 101 VHNGEIYNYRELREELEARGYRFEGESDSEVI--LHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARDR 178 (220)
T ss_pred EECcEEEcHHHHHHHHHHCCCeecCCCHHHHH--HHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEECCCCEEEEEECC
Confidence 99999999999998873 2 67888887 789998874332 34578999999999999999888999999999
Q ss_pred CCCccEEEEEecCCEEEEEechhhHhhhccccccccCC
Q 027478 151 FGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ 188 (223)
Q Consensus 151 ~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~ 188 (223)
+|.+||||+...++.++||||..++...+...+..+||
T Consensus 179 ~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~ 216 (220)
T cd00352 179 FGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPP 216 (220)
T ss_pred CCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCC
Confidence 99999999997346799999999998876444555655
No 34
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.95 E-value=2.7e-28 Score=189.07 Aligned_cols=107 Identities=31% Similarity=0.536 Sum_probs=71.6
Q ss_pred CCCCCCceE-eeCCcEEEEEEEEEecchhhHHhcC---C---CCCccHHHHHHHHHHH---hhccCCCcHHHHHhcccCc
Q 027478 62 ESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKA---LRDRAPYPPNHVVGHLSGY 131 (223)
Q Consensus 62 ~~~~~QP~~-~~~~~~~lv~nGeI~N~~~L~~~lg---~---~~sd~e~~~~l~l~~~---~g~~g~~~~~~~l~~L~G~ 131 (223)
...+.||+. +.++++++++||+|||+++|+++|. . +.+|+|++ +++|++ || .+++++|+|.
T Consensus 9 ~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i--~~~~~~~~~~~-------~~~~~~l~G~ 79 (125)
T PF13537_consen 9 SDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELI--LHLYEEYREWG-------EDFLKRLDGP 79 (125)
T ss_dssp ----------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHH--HHHHHH---HG-------GGGGGT--EE
T ss_pred ccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHH--HHHHHHHHHHH-------HHHHHhCCce
Confidence 346799999 5778899999999999999999983 2 56788875 789887 77 8999999999
Q ss_pred eEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhh
Q 027478 132 FAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKG 177 (223)
Q Consensus 132 fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~ 177 (223)
|||++||+++++++++|||+|+|||||+..+++.++||||+++|++
T Consensus 80 fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 80 FAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp EEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred EEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 9999999998999999999999999999984358999999999974
No 35
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.95 E-value=3.3e-27 Score=196.45 Aligned_cols=96 Identities=25% Similarity=0.311 Sum_probs=87.4
Q ss_pred CcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEE
Q 027478 74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147 (223)
Q Consensus 74 ~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~la 147 (223)
+++++++||||||+.+|+++| +. +.+|+|++ +++|++|| .+++++|+|+|||+|||++ ++|+++
T Consensus 50 ~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvl--l~~y~~~G-------~~~l~~L~G~FAfai~D~~-~~L~la 119 (199)
T cd01909 50 ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELL--LLLLTRLG-------LHAFRLAEGDFCFFIEDGN-GRLTLA 119 (199)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHH--HHHHHHHh-------HHHHHHcCEEEEEEEEcCC-CEEEEE
Confidence 579999999999999999988 32 67888887 79999999 8999999999999999998 999999
Q ss_pred EcCCCCccEEEEEecCCEEEEEechhhHhhhccc
Q 027478 148 SDQFGKVPLYWGITADGHVAFADDADLLKGACGK 181 (223)
Q Consensus 148 RD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~ 181 (223)
|||+|+|||||... +.++||||+++|.+++..
T Consensus 120 RDr~GikPLYy~~~--~~l~FASEikaLla~~~~ 151 (199)
T cd01909 120 TDHAGSVPVYLVQA--GEVWATTELKLLAAHEGP 151 (199)
T ss_pred ECCCCCcCeEEEEC--CeEEEEeCHHHHhhCcCC
Confidence 99999999999876 579999999999887653
No 36
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.93 E-value=3.8e-25 Score=173.37 Aligned_cols=120 Identities=26% Similarity=0.415 Sum_probs=103.1
Q ss_pred CCCcce--EECCcEEEEEEec----CC-CCCCCceEeeCCcEEEEEEEEEecchhhHHhcC---C---CCCccHHHHHHH
Q 027478 42 SSAVSV--QVGDNVTLAYTHQ----NE-SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L---AKSANEVILVIE 108 (223)
Q Consensus 42 pd~~~~--~~~~~~~lg~~r~----~~-~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~lg---~---~~sd~e~~~~l~ 108 (223)
||..++ +..+.++|||+|. .. ..+.||+...+++++++|||+|+|+.+|+++|+ + +.+|+|++ ++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii--~~ 78 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEII--AA 78 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHH--HH
Confidence 566665 7788899999991 11 234599966678899999999999999999883 3 68888987 67
Q ss_pred HHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEec
Q 027478 109 AYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADD 171 (223)
Q Consensus 109 l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe 171 (223)
+++++| .++++.|+|.|++++++...++++++||+.|.+||||+.. ++.++||||
T Consensus 79 li~~~g-------~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 79 LIHRWG-------EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HHHHHH-------HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 888888 7899999999999999988899999999999999999998 578999998
No 37
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.93 E-value=5.5e-25 Score=194.38 Aligned_cols=206 Identities=18% Similarity=0.252 Sum_probs=148.0
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE----------------------------CCc
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV----------------------------GDN 52 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~----------------------------~~~ 52 (223)
||||||...+..-+.+ . .+..-.-+|+|||.++.++-. .++
T Consensus 1 eCGv~Gi~~a~~~~~l----------~-~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~ 69 (474)
T KOG0572|consen 1 ECGVFGIVAAGEASRL----------P-ELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGS 69 (474)
T ss_pred CCcEEEEEecCccccC----------c-HHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccc
Confidence 9999999864443222 1 112223689999999887632 235
Q ss_pred EEEEEEec-----CCCCCCCceEee--CCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHH--H-hhcc
Q 027478 53 VTLAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYK--A-LRDR 116 (223)
Q Consensus 53 ~~lg~~r~-----~~~~~~QP~~~~--~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~--~-~g~~ 116 (223)
.+|||+|. ....+.|||+.. .+.+.+.|||++.|+++||+++ |+ |.||+|+++.+-++. + ++..
T Consensus 70 ~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~ 149 (474)
T KOG0572|consen 70 IGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVD 149 (474)
T ss_pred eeeeeeecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhccc
Confidence 89999992 223679999864 3569999999999999999998 33 889999984333332 1 1112
Q ss_pred CC---CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecC--C--EEEEEechhhHhhhccccccccCC-
Q 027478 117 AP---YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITAD--G--HVAFADDADLLKGACGKSLASFPQ- 188 (223)
Q Consensus 117 g~---~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~d--g--~~~faSe~~aL~~~~~~~~~~~P~- 188 (223)
++ ..+..+++.++|.|++++.-. ++||++|||+|.|||+.|+... + .+++|||.+++..+.++..+++-|
T Consensus 150 ~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PG 227 (474)
T KOG0572|consen 150 APDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPG 227 (474)
T ss_pred CccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCc
Confidence 22 357899999999999999975 6799999999999999998532 2 799999999999987776666644
Q ss_pred -----CCCCeEEe---eCCC--------CccccccCCcccccCceEE
Q 027478 189 -----AVGGLRSF---ENPK--------NKITAVPAAEEEIWGATFK 219 (223)
Q Consensus 189 -----~~~~~~~~---~~~~--------~~~~~~~r~~s~~~g~~~~ 219 (223)
+.++.++. +.|. -+..|++|+||.+.|.+-+
T Consensus 228 EiV~i~r~g~~s~~~~~~~~~~~~~~cIFEyvYFArpdSi~eG~sVY 274 (474)
T KOG0572|consen 228 EIVEISRNGVKSVDIMKRPDENRMAFCIFEYVYFARPDSIFEGQSVY 274 (474)
T ss_pred eEEEEecCCceeeeeecCCccccccceeeeEEEeccCCceecccchH
Confidence 33333332 3332 1223999999999997644
No 38
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.92 E-value=1.3e-24 Score=210.12 Aligned_cols=184 Identities=17% Similarity=0.260 Sum_probs=138.0
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE--C----------------------------
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--G---------------------------- 50 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~--~---------------------------- 50 (223)
||||||.....-+ +. .......+..-+.+|+|||.|+.|+.+ +
T Consensus 1 mCGI~g~~~~~~~-----~~--~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~ 73 (680)
T PLN02981 1 MCGIFAYLNYNVP-----RE--RRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEV 73 (680)
T ss_pred CceEEEEEccCCc-----cc--cccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhc
Confidence 9999998731100 00 001356677889999999999988765 1
Q ss_pred ------------CcEEEEEEec---C--CCCCCCceEee-CCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHH
Q 027478 51 ------------DNVTLAYTHQ---N--ESPLRQRSFAV-KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILV 106 (223)
Q Consensus 51 ------------~~~~lg~~r~---~--~~~~~QP~~~~-~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~ 106 (223)
++++|||+|. . ...+.||+... ++.+++||||+|+|+.+|+++| |+ +.+|+|++
T Consensus 74 ~~~~l~~~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi-- 151 (680)
T PLN02981 74 AETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVI-- 151 (680)
T ss_pred cccccccccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHH--
Confidence 2479999992 2 23578999863 3679999999999999999998 44 78899987
Q ss_pred HHH----HHHhhcc-C--C--CcHHHHHhcccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEec--C-----------
Q 027478 107 IEA----YKALRDR-A--P--YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITA--D----------- 163 (223)
Q Consensus 107 l~l----~~~~g~~-g--~--~~~~~~l~~L~G~fa~vi~d~~-~~~l~laRD~~G~~PLyy~~~~--d----------- 163 (223)
+++ |+.||.. + . +++.+++++|+|+|||++++.. .++++++||+ +||++|..+ +
T Consensus 152 ~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~ 228 (680)
T PLN02981 152 PKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSE 228 (680)
T ss_pred HHHHHHHHHhcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccc
Confidence 566 5555421 1 1 3567899999999999999966 4899999995 999999862 1
Q ss_pred ----------CEEEEEechhhHhhhccccccccCC------CCCCeEEee
Q 027478 164 ----------GHVAFADDADLLKGACGKSLASFPQ------AVGGLRSFE 197 (223)
Q Consensus 164 ----------g~~~faSe~~aL~~~~~~~~~~~P~------~~~~~~~~~ 197 (223)
+.+++|||.+||..++ +.+..++| +.+++..|.
T Consensus 229 ~~~~~~~~~~~~~~~aSe~~al~~~~-~~~~~l~~gei~~i~~~~~~~~~ 277 (680)
T PLN02981 229 GFLTKNRDKPKEFFLASDASAVVEHT-KRVLVIEDNEVVHLKDGGVGIYK 277 (680)
T ss_pred cccccccccCCcEEEEeCHHHHHHhc-CEEEEECCCeEEEEECCeEEEEe
Confidence 3699999999999985 45777766 566677665
No 39
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.92 E-value=2.4e-24 Score=207.68 Aligned_cols=184 Identities=17% Similarity=0.199 Sum_probs=135.1
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC------------------------------
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG------------------------------ 50 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~------------------------------ 50 (223)
||||||-.....+. . +......+..-+.+|.|||-|+.|+...
T Consensus 1 mCGI~g~~~~~~~~-~------~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~ 73 (670)
T PTZ00394 1 MCGIFGYANHNVPR-T------VEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNIS 73 (670)
T ss_pred CceEEEEECCCCcc-c------cccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHH
Confidence 99999987422110 0 0012455667788999999887664332
Q ss_pred -----------------------CcEEEEEEe---cCC--CCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---
Q 027478 51 -----------------------DNVTLAYTH---QNE--SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL--- 96 (223)
Q Consensus 51 -----------------------~~~~lg~~r---~~~--~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~--- 96 (223)
++++|||+| .+. ..+.||+.+.++++++||||+|||+.+||++| |+
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~ 153 (670)
T PTZ00394 74 QLREKVFSEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFS 153 (670)
T ss_pred HHHHHHhcchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEec
Confidence 247999999 222 35789998877889999999999999999998 44
Q ss_pred CCCccHHHHHHHH----HHHhhccCC-CcHHHHHhcccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEecC-------
Q 027478 97 AKSANEVILVIEA----YKALRDRAP-YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITAD------- 163 (223)
Q Consensus 97 ~~sd~e~~~~l~l----~~~~g~~g~-~~~~~~l~~L~G~fa~vi~d~~-~~~l~laRD~~G~~PLyy~~~~d------- 163 (223)
+.+|+|++ +++ |++||.... +++.+++++|+|+|||++.... .++++++||+ +||++|..++
T Consensus 154 s~tDtEvi--~~li~~~~~~~g~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~ 228 (670)
T PTZ00394 154 SDTDTEVI--SVLSEYLYTRKGIHNFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVM 228 (670)
T ss_pred CCChHHHH--HHHHHHHHHhcCCCCHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEecccccccccc
Confidence 78899987 555 444432111 4567899999999999999643 5899999997 9999999731
Q ss_pred -------------CEEEEEechhhHhhhccccccccCC------CCCCeEEee
Q 027478 164 -------------GHVAFADDADLLKGACGKSLASFPQ------AVGGLRSFE 197 (223)
Q Consensus 164 -------------g~~~faSe~~aL~~~~~~~~~~~P~------~~~~~~~~~ 197 (223)
+.++|||+..||..++.+ +..++. ..+++.-|.
T Consensus 229 ~~~~~~~~~~~~~~~~~~aSd~~a~~~~t~~-~~~l~dg~~~~~~~~~~~~~~ 280 (670)
T PTZ00394 229 KLQTYDLTDLSGPLEVFFSSDVNSFAEYTRE-VVFLEDGDIAHYCDGALRFYN 280 (670)
T ss_pred ccccccccccCCCCcEEEEeChHHHHHhhce-EEEecCCeEEEEECCEEEEEe
Confidence 479999999999999865 555555 444555554
No 40
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=4.8e-21 Score=179.80 Aligned_cols=161 Identities=19% Similarity=0.255 Sum_probs=130.6
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (223)
||||||-...... ....+.+-+++|.-||=|+.|+.. .+.+
T Consensus 1 MCGIvG~i~~~~~------------~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~ 68 (597)
T COG0449 1 MCGIVGYIGFLRE------------AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGV 68 (597)
T ss_pred CCcEEEEEcCCcc------------HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCce
Confidence 9999997632221 245666788899999999988632 2468
Q ss_pred EEEEEe-----cCCCCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC-CcH
Q 027478 54 TLAYTH-----QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-YPP 121 (223)
Q Consensus 54 ~lg~~r-----~~~~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~-~~~ 121 (223)
+||||| .+...+.+|+.+ +++++||||.|.||.+||++| |+ +++|||++ +|+++++-+.+. +++
T Consensus 69 gIgHTRWATHG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi--~hLi~~~~~~~~~~a~ 144 (597)
T COG0449 69 GIAHTRWATHGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVI--AHLLEEIYDTSLLEAV 144 (597)
T ss_pred eeeeccccCCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHH--HHHHHHHHHhHHHHHH
Confidence 999999 244578899966 889999999999999999999 55 78888887 788876543322 566
Q ss_pred HHHHhcccCceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccc
Q 027478 122 NHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGK 181 (223)
Q Consensus 122 ~~~l~~L~G~fa~vi~d~~~-~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~ 181 (223)
..++++|+|.||+++.|.+. +++++||. | .||+.|.. ++..++||+..|++.++.+
T Consensus 145 ~~~l~~l~Gsyal~~~~~~~p~~i~~ar~--~-sPL~iG~g-~~e~f~aSD~~a~l~~t~~ 201 (597)
T COG0449 145 KKVLKRLEGSYALLCTHSDFPDELVAARK--G-SPLVIGVG-EGENFLASDVSALLNFTRR 201 (597)
T ss_pred HHHHHHhcceeEEEEEecCCCCeEEEEcC--C-CCeEEEec-CCcceEecChhhhhhhhce
Confidence 78999999999999999875 79999998 3 99999997 6789999999999998765
No 41
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.70 E-value=2.3e-16 Score=142.49 Aligned_cols=144 Identities=19% Similarity=0.224 Sum_probs=101.3
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE-CCc---EE-EEEEe-cCCCCCCCceEeeCC
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV-GDN---VT-LAYTH-QNESPLRQRSFAVKD 74 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~-~~~---~~-lg~~r-~~~~~~~QP~~~~~~ 74 (223)
|||||.+.....+ . ++ .....+|...+..||||.++... +.. +. .+++- .......||+.. +.
T Consensus 1 MCGI~~s~~~~~~-l-------~~--~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG~~t~Qpvv~-d~ 69 (520)
T KOG0573|consen 1 MCGIFLSVDKDLA-L-------NS--ELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRGYLTKQPVVE-DD 69 (520)
T ss_pred CceEEEeecCCcc-c-------cc--cchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEeeeeccCceec-cc
Confidence 9999999854433 1 12 33456899999999999876332 221 11 11111 111256899876 45
Q ss_pred cEEEEEEEEEecchhhHHhcCCCCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCc
Q 027478 75 EIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKV 154 (223)
Q Consensus 75 ~~~lv~nGeI~N~~~L~~~lg~~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~ 154 (223)
++++.|||||||-..-. +..|+..+ ++.+...++. ..|.+.++.++|.|+|++||.+.++||++||++|+|
T Consensus 70 ~~vfl~NGeIyn~~~s~-----~~~d~~~l--~~~l~~~~e~--~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRr 140 (520)
T KOG0573|consen 70 RYVFLFNGEIYNGEKSD-----TLFDTDIL--AEELSNLKES--GDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRR 140 (520)
T ss_pred ceEEEecceeccCCCcc-----ccchHHHH--HHHHhcCCcc--ccHHHHHHhccCCceEEEEEccCcEEEEecccccce
Confidence 68999999999965311 23455554 5666655422 356889999999999999999999999999999999
Q ss_pred cEEEEEecCC
Q 027478 155 PLYWGITADG 164 (223)
Q Consensus 155 PLyy~~~~dg 164 (223)
+|.|+....+
T Consensus 141 SLly~~~~~~ 150 (520)
T KOG0573|consen 141 SLLYSLDPFN 150 (520)
T ss_pred eeeEEeccCc
Confidence 9999998655
No 42
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.59 E-value=1.9e-14 Score=131.25 Aligned_cols=137 Identities=14% Similarity=0.142 Sum_probs=95.9
Q ss_pred CCcEEEEEEecCCC-----CCCCceEeeCCcEEEEEEEEEecchhhHHhcC--------------------C---CCCcc
Q 027478 50 GDNVTLAYTHQNES-----PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--------------------L---AKSAN 101 (223)
Q Consensus 50 ~~~~~lg~~r~~~~-----~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~lg--------------------~---~~sd~ 101 (223)
.+..+|+|+|.... ...||+. +++|||||.|+..+++.+. . +.|||
T Consensus 200 ~s~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS 273 (413)
T cd00713 200 ESAFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDS 273 (413)
T ss_pred eEEEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChH
Confidence 34689999993222 3679984 4899999999988876541 0 37888
Q ss_pred HHHHHHHHHHHhhccCC---CcHH-------------------------HHHhcccCceEEEEEECCCCEEEEEEcCCCC
Q 027478 102 EVILVIEAYKALRDRAP---YPPN-------------------------HVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (223)
Q Consensus 102 e~~~~l~l~~~~g~~g~---~~~~-------------------------~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~ 153 (223)
+++ .++++..-..|. +++. .+++.++|.|++++.|. +.++++|||+|.
T Consensus 274 ~~l--d~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGl 349 (413)
T cd00713 274 ASL--DNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGL 349 (413)
T ss_pred HHH--HHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCC
Confidence 886 455543321121 2222 56688999999999985 789999999999
Q ss_pred ccEEEEEecCCEEEEEechhhHhhhcccccc-ccCCCCCCeEEee
Q 027478 154 VPLYWGITADGHVAFADDADLLKGACGKSLA-SFPQAVGGLRSFE 197 (223)
Q Consensus 154 ~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~-~~P~~~~~~~~~~ 197 (223)
|||+|+.++++.+++|||.++|.. ....+. .-+..+|++....
T Consensus 350 RPl~~~~t~d~~~v~ASE~gal~~-~~~~V~~kg~l~PGe~v~id 393 (413)
T cd00713 350 RPARYVITKDGLLIMSSEVGVVDV-PPEKVVEKGRLGPGEMLLVD 393 (413)
T ss_pred cceEEEEECCCEEEEEeCCcccCC-CcceeeecCCCCCCeEEEEE
Confidence 999999986668999999999955 333232 1122445555443
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.53 E-value=1.4e-13 Score=118.67 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=88.4
Q ss_pred cEEEEEEe---cC--C-CCCCCceEeeCCcEEEEEEEEEecch-----hhHHhc---C---C-CCCccHHHHHHHHHHHh
Q 027478 52 NVTLAYTH---QN--E-SPLRQRSFAVKDEIFCLFEGALDNLG-----SLRQQY---G---L-AKSANEVILVIEAYKAL 113 (223)
Q Consensus 52 ~~~lg~~r---~~--~-~~~~QP~~~~~~~~~lv~nGeI~N~~-----~L~~~l---g---~-~~sd~e~~~~l~l~~~~ 113 (223)
.++|||+| .. . ..+.|||.. ++++++|||.|.|++ +|+++| + . +.+|+|+++ +++.+.
T Consensus 83 ~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~--~li~~~ 158 (251)
T TIGR03442 83 GCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLF--ALLLNR 158 (251)
T ss_pred ceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHH--HHHHHH
Confidence 47899999 11 2 268999984 789999999999997 566655 2 1 678899874 455433
Q ss_pred h-ccCC----CcHHHHHhcccCc-------eEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccc
Q 027478 114 R-DRAP----YPPNHVVGHLSGY-------FAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGK 181 (223)
Q Consensus 114 g-~~g~----~~~~~~l~~L~G~-------fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~ 181 (223)
. +..+ +++.++++.|.|. |++++.|. ++|++.||+. ||||+.. ++.++||||. | .+.
T Consensus 159 ~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~-~~~~vvASEp--l---~~~ 227 (251)
T TIGR03442 159 LLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKD-PEGVIVASEP--Y---DDD 227 (251)
T ss_pred HhhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEc-CCEEEEEeCC--c---CCC
Confidence 2 2111 2456777888888 99999984 7999999975 9999987 4579999998 2 222
Q ss_pred -cccccCC
Q 027478 182 -SLASFPQ 188 (223)
Q Consensus 182 -~~~~~P~ 188 (223)
..+.+||
T Consensus 228 ~~W~~v~p 235 (251)
T TIGR03442 228 PGWQDVPD 235 (251)
T ss_pred CCceEeCC
Confidence 4555665
No 44
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.47 E-value=3.6e-13 Score=116.40 Aligned_cols=119 Identities=16% Similarity=0.126 Sum_probs=91.3
Q ss_pred CcEEEEEEec-----CCCCCCCceEeeCCcEEEEEEEEEecchhhHHhc---C---C-CCCccHHHHHHHHHHHhhc-cC
Q 027478 51 DNVTLAYTHQ-----NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---G---L-AKSANEVILVIEAYKALRD-RA 117 (223)
Q Consensus 51 ~~~~lg~~r~-----~~~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g---~-~~sd~e~~~~l~l~~~~g~-~g 117 (223)
++++|||+|. ....+.||+.. ++++++|||.|.|+++|+..+ + . +.+|+|++ ++++.+... .+
T Consensus 80 ~~~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~--~~li~~~l~~~~ 155 (257)
T cd01908 80 SPLVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELA--FALLLSRLLERD 155 (257)
T ss_pred ccEEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHH--HHHHHHHHHhcC
Confidence 4689999992 12367899976 489999999999999998876 3 2 68888987 455544321 11
Q ss_pred C-------CcHHHHHhccc-----CceEEEEEECCCCEEEEEEcCCCCccEEEEEec-----------------CCEEEE
Q 027478 118 P-------YPPNHVVGHLS-----GYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA-----------------DGHVAF 168 (223)
Q Consensus 118 ~-------~~~~~~l~~L~-----G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~-----------------dg~~~f 168 (223)
. .++.++++.|+ |.|++++.|. ++++++||+. .+||||...+ ++.++|
T Consensus 156 ~~~~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 232 (257)
T cd01908 156 PLDPAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVV 232 (257)
T ss_pred CcchHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEE
Confidence 1 35678889999 6888888875 7899999987 7999999863 357999
Q ss_pred EechhhHh
Q 027478 169 ADDADLLK 176 (223)
Q Consensus 169 aSe~~aL~ 176 (223)
|||..+..
T Consensus 233 aSE~l~~~ 240 (257)
T cd01908 233 ASEPLTDD 240 (257)
T ss_pred EeCCCCCC
Confidence 99988764
No 45
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.46 E-value=1.8e-13 Score=125.76 Aligned_cols=105 Identities=21% Similarity=0.355 Sum_probs=78.7
Q ss_pred cEEEEEEe-----cCCCCCCCceEe-eCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC-
Q 027478 52 NVTLAYTH-----QNESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP- 118 (223)
Q Consensus 52 ~~~lg~~r-----~~~~~~~QP~~~-~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~- 118 (223)
+++|+|+| .+...+.+|+.+ +.+.+++||||.|.||++|+..| |+ +.+|||.+ +.++...-+.-+
T Consensus 80 H~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEci--aKL~~~~~D~~~~ 157 (670)
T KOG1268|consen 80 HCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECI--AKLYKHIYDTSPE 157 (670)
T ss_pred eeeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHH--HHHHHHHHhhCCC
Confidence 58999999 344577899875 34679999999999999999888 55 67778876 444443222221
Q ss_pred -C----cHHHHHhcccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEe
Q 027478 119 -Y----PPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGIT 161 (223)
Q Consensus 119 -~----~~~~~l~~L~G~fa~vi~d~~-~~~l~laRD~~G~~PLyy~~~ 161 (223)
. -++.++++|+|+|++++.... .+++++.|+ | .||..+..
T Consensus 158 ~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rr--g-SPlliGvK 203 (670)
T KOG1268|consen 158 DLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARK--G-SPLLIGVK 203 (670)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeecc--C-Ccceeeec
Confidence 1 146789999999999988755 689999998 4 78887753
No 46
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.45 E-value=3.7e-13 Score=121.56 Aligned_cols=114 Identities=22% Similarity=0.211 Sum_probs=79.3
Q ss_pred ECCcEEEEEEec-----CCCCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---C----------------CCcc
Q 027478 49 VGDNVTLAYTHQ-----NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---A----------------KSAN 101 (223)
Q Consensus 49 ~~~~~~lg~~r~-----~~~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~---~----------------~sd~ 101 (223)
+.+..+|+|+|. +.-...||+. +++|||||.|...+++.+ +. + .||+
T Consensus 193 ~~s~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS 266 (361)
T PF00310_consen 193 FKSHFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDS 266 (361)
T ss_dssp EEBSEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HH
T ss_pred ccceEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChH
Confidence 445799999992 2225689996 799999999999998876 22 3 7888
Q ss_pred HHHHHHHHHHHhhccCC----------------------------CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCC
Q 027478 102 EVILVIEAYKALRDRAP----------------------------YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (223)
Q Consensus 102 e~~~~l~l~~~~g~~g~----------------------------~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~ 153 (223)
+++ ..+++..-..+. +....+++.++|.|++++.|. +.++++|||.|.
T Consensus 267 ~~l--~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GL 342 (361)
T PF00310_consen 267 EVL--DNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGL 342 (361)
T ss_dssp HHH--HHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--
T ss_pred HHH--HHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCC
Confidence 886 444443322230 012456788999999999975 679999999999
Q ss_pred ccEEEEEecCCEEEEEech
Q 027478 154 VPLYWGITADGHVAFADDA 172 (223)
Q Consensus 154 ~PLyy~~~~dg~~~faSe~ 172 (223)
||+.|+.++|+.+++|||.
T Consensus 343 RP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 343 RPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp S--EEEEETTCEEEEESST
T ss_pred cceEEEEECCCEEEEEeCC
Confidence 9999999977889999984
No 47
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.72 E-value=1.8e-07 Score=95.97 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=50.4
Q ss_pred HHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhcccccc
Q 027478 124 VVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLA 184 (223)
Q Consensus 124 ~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~ 184 (223)
+++-++|+|++++.|. +.+++.|||.|.|||.|+.++|+.+++|||..++....++.++
T Consensus 332 lmEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvr 390 (1485)
T PRK11750 332 HMEPWDGPAGIVMTDG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVE 390 (1485)
T ss_pred hcccCCCCEEEEEEeC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccceeEE
Confidence 3445799999999984 7999999999999999998877789999999998776666555
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.15 E-value=1.6e-05 Score=69.48 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=52.4
Q ss_pred cEEEEEEec-----CCCCCCCceEee--CCcEEEEEEEEEecchhhHHh-cCC-CCCccHHHHHHHHHHHhhccC---C-
Q 027478 52 NVTLAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQ-YGL-AKSANEVILVIEAYKALRDRA---P- 118 (223)
Q Consensus 52 ~~~lg~~r~-----~~~~~~QP~~~~--~~~~~lv~nGeI~N~~~L~~~-lg~-~~sd~e~~~~l~l~~~~g~~g---~- 118 (223)
...|+|+|. ....+.|||... .++.+++|||.|.+++.++.. +.. ..+|+|.+++ .++....+.+ .
T Consensus 72 ~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~~~G~TDSE~~F~-lll~~l~~~~~~~~~ 150 (271)
T PF13230_consen 72 RLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQPVGTTDSEHAFC-LLLDQLRDRGPDAPP 150 (271)
T ss_dssp EEEEEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHHHT--S--HHHHHHH-HHHHTTTTT-HH--H
T ss_pred CEEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccccccCCCcHHHHHHH-HHHHHHHHhCCcccc
Confidence 468899991 223678999853 257899999999998766522 222 6789999753 3343322222 1
Q ss_pred ------CcHHHHHhccc--CceEEEEEECCCCEEEEEEc
Q 027478 119 ------YPPNHVVGHLS--GYFAFIVYDKSTSTLFVASD 149 (223)
Q Consensus 119 ------~~~~~~l~~L~--G~fa~vi~d~~~~~l~laRD 149 (223)
..+.+..+.+. |.++|++.|. +.|++.|+
T Consensus 151 ~~~~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~ 187 (271)
T PF13230_consen 151 ALEELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRY 187 (271)
T ss_dssp HHHHHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEE
T ss_pred cHHHHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEc
Confidence 12344555555 6788888885 79999998
No 49
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=97.65 E-value=0.00045 Score=62.60 Aligned_cols=122 Identities=16% Similarity=0.124 Sum_probs=78.0
Q ss_pred CCcEEEEEEecCC-----CCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC
Q 027478 50 GDNVTLAYTHQNE-----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP 118 (223)
Q Consensus 50 ~~~~~lg~~r~~~-----~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~ 118 (223)
.+..+|+|+|.+. -..+||+. .++|||||.++...++.+ +. +..|+|.+ ..++......+-
T Consensus 201 ~s~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~--a~l~p~~~~~~s 272 (371)
T COG0067 201 KSAIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVL--AKLLPILMRGGS 272 (371)
T ss_pred ceeEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHH--HHHHHHhcccCC
Confidence 4568999999322 14577874 369999999998876665 32 66777765 334421111110
Q ss_pred -----CcH----------HHHHhcccCceEEEEEE-CCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhcc
Q 027478 119 -----YPP----------NHVVGHLSGYFAFIVYD-KSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACG 180 (223)
Q Consensus 119 -----~~~----------~~~l~~L~G~fa~vi~d-~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~ 180 (223)
+.. ..-...|.|+||++.-. ...+...+.+|+.+.+|.+-|-. +..|.++|+..|++..+.
T Consensus 273 Ds~~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrng 349 (371)
T COG0067 273 DSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRNG 349 (371)
T ss_pred cchhhhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccCC
Confidence 000 23446678888877653 22467777888888888888876 567888888888766543
No 50
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=97.64 E-value=0.00075 Score=55.01 Aligned_cols=93 Identities=20% Similarity=0.314 Sum_probs=65.5
Q ss_pred CcEEEEEEEEEecchhhHHhcCC------CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEE
Q 027478 74 DEIFCLFEGALDNLGSLRQQYGL------AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147 (223)
Q Consensus 74 ~~~~lv~nGeI~N~~~L~~~lg~------~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~la 147 (223)
.+-..-.-|.|||+.-|+.-.|. .-+|.|++ +.++.+.| ..++.--+|+|+|.+=|+ +++|.+.
T Consensus 47 ~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL--~~~~~~lG-------~~aLsLAEGdfcffiE~k-ng~L~l~ 116 (201)
T PF09147_consen 47 ERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELL--YTIFTRLG-------NSALSLAEGDFCFFIEDK-NGELTLI 116 (201)
T ss_dssp TTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHH--HHHHHHH--------GGGGGG--SSEEEEEEET-TSEEEEE
T ss_pred cCccEEEEEEeccHHHHHHhhheeeccceeeccHHHH--HHHHHHhh-------hhhhhhhcCceEEEEecC-CCcEEEE
Confidence 44567778999999888766654 46787876 57888888 789999999999999876 6899999
Q ss_pred EcCCCCccEEEEEecCCEEEEEechhhHhhh
Q 027478 148 SDQFGKVPLYWGITADGHVAFADDADLLKGA 178 (223)
Q Consensus 148 RD~~G~~PLyy~~~~dg~~~faSe~~aL~~~ 178 (223)
.|+-|..|.|.-.+ +..++.-.+|-.-..
T Consensus 117 Tds~G~~pv~lV~~--~~~WiTn~LK~V~~~ 145 (201)
T PF09147_consen 117 TDSRGFNPVYLVQS--KFIWITNSLKLVSAV 145 (201)
T ss_dssp E-SSSSS-EEEEES--SSEEEES-HHHHHHH
T ss_pred ecCCCCceEEEEec--CceEEecceEEEEEe
Confidence 99999999998876 357887777776543
No 51
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=95.66 E-value=0.098 Score=45.34 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=30.2
Q ss_pred CcEEEEEEec-----CCCCCCCceEeeC--CcEEEEEEEEEecchhh
Q 027478 51 DNVTLAYTHQ-----NESPLRQRSFAVK--DEIFCLFEGALDNLGSL 90 (223)
Q Consensus 51 ~~~~lg~~r~-----~~~~~~QP~~~~~--~~~~lv~nGeI~N~~~L 90 (223)
+...|+|+|. ....+.||++.+. ...+++|||.|.+++.+
T Consensus 70 S~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~ 116 (252)
T COG0121 70 SELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116 (252)
T ss_pred ccEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccc
Confidence 3588999991 2236789998642 35799999999999873
No 52
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=87.06 E-value=2.4 Score=44.20 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=37.3
Q ss_pred HhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhH
Q 027478 125 VGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLL 175 (223)
Q Consensus 125 l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL 175 (223)
++--+|.--+.+-| .+.+-+.=||.|.||-=|+.+.|+.++.|||.-.+
T Consensus 407 MEpWDGPALl~FsD--Gry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv 455 (2142)
T KOG0399|consen 407 MEPWDGPALLTFSD--GRYCGAILDRNGLRPARYYITSDDRVICASEVGVV 455 (2142)
T ss_pred CCCCCCceEEEecC--CceeeeeeccCCCcceeeEEecCCEEEEeeccccc
Confidence 34556765555555 36788888999999997777778899999997654
No 53
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=70.32 E-value=3.2 Score=38.02 Aligned_cols=38 Identities=8% Similarity=-0.060 Sum_probs=26.0
Q ss_pred CeeeeeccccCCchhhhcCCCCCCC-CcchHHHHHHHhHcCC-CCCcce
Q 027478 1 MLGVFSSAIVSPPEELVAAGSRTPS-PKTTSTALVDRFLQTN-SSAVSV 47 (223)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~m~~~l~~RG-pd~~~~ 47 (223)
||||.+-....+- -++ .-+...+|+..|.||| +++.+.
T Consensus 12 aCGig~i~~~~g~---------~sh~iv~~~~~~L~~m~hRG~~~adg~ 51 (371)
T COG0067 12 ACGIGGIAHKDGR---------PSHKIVEDALEALVNLTHRGAPGADGY 51 (371)
T ss_pred cCcEEEEEecCCC---------cchhHHHHHHHHHHhhhccCCCCCCcc
Confidence 8999998632222 112 3677889999999999 666543
No 54
>PF10736 DUF2527: Protein of unknown function (DUF2627) ; InterPro: IPR019672 This entry represents small proteins with unknown function and appear to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence. Some proteins are annotated as YobF and may be involved in stress responses in E. coli.
Probab=63.46 E-value=2.3 Score=25.38 Aligned_cols=8 Identities=50% Similarity=0.845 Sum_probs=6.9
Q ss_pred Ceeeeecc
Q 027478 1 MLGVFSSA 8 (223)
Q Consensus 1 m~gi~~~~ 8 (223)
|||||++.
T Consensus 1 M~GIFSKE 8 (38)
T PF10736_consen 1 MNGIFSKE 8 (38)
T ss_pred CcccccHh
Confidence 89999886
No 55
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=47.68 E-value=27 Score=23.56 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=19.9
Q ss_pred eEEEEEECCCCEEEEEEcCCCC--ccEEEE
Q 027478 132 FAFIVYDKSTSTLFVASDQFGK--VPLYWG 159 (223)
Q Consensus 132 fa~vi~d~~~~~l~laRD~~G~--~PLyy~ 159 (223)
+.-+.+|...+++++..|. |+ |||+.-
T Consensus 33 ~vsi~~~~~~~ei~I~tD~-GR~~RPL~vV 61 (63)
T PF04566_consen 33 EVSIVYDIREKEIRINTDA-GRLCRPLFVV 61 (63)
T ss_dssp TSEEEEETTTTEEEEE-SS-CEEEEEEEEE
T ss_pred eeEEEEeccCCEEEEEccC-CcccceeEEe
Confidence 3345688889999999996 74 888763
No 56
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=36.13 E-value=21 Score=28.79 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.3
Q ss_pred CcEEEEEEEEEecchhhHH
Q 027478 74 DEIFCLFEGALDNLGSLRQ 92 (223)
Q Consensus 74 ~~~~lv~nGeI~N~~~L~~ 92 (223)
+++.+|+||+|-|.+.+..
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999987753
No 57
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=35.72 E-value=21 Score=28.72 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.3
Q ss_pred CcEEEEEEEEEecchhhHH
Q 027478 74 DEIFCLFEGALDNLGSLRQ 92 (223)
Q Consensus 74 ~~~~lv~nGeI~N~~~L~~ 92 (223)
+++.+|+||+|-|.+.+..
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999987753
No 58
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=35.06 E-value=23 Score=32.32 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=17.0
Q ss_pred cchHHHHHHHhHcCCC------CCcceE
Q 027478 27 KTTSTALVDRFLQTNS------SAVSVQ 48 (223)
Q Consensus 27 ~~~~~~m~~~l~~RGp------d~~~~~ 48 (223)
-....+++..|.|||. |+.|+.
T Consensus 18 v~~~l~~L~~m~HRG~~d~~tGDGAGi~ 45 (361)
T PF00310_consen 18 VDDALEALKRMEHRGGVDGNTGDGAGIL 45 (361)
T ss_dssp HHHHHHHHHHHGGGSTBTSSCESEEEEE
T ss_pred HHHHHHHHhcccccCCCCCCCCcceEEE
Confidence 4566789999999999 666554
No 59
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=31.72 E-value=18 Score=28.35 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=18.4
Q ss_pred cCceEEEEEECCCCEEEEEEcCCCCccEEE
Q 027478 129 SGYFAFIVYDKSTSTLFVASDQFGKVPLYW 158 (223)
Q Consensus 129 ~G~fa~vi~d~~~~~l~laRD~~G~~PLyy 158 (223)
+|.|++++++. ++++-..++ |++|||=
T Consensus 10 e~~~S~Vv~~~--~~i~t~~~r-Gv~pL~~ 36 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTSDGR-GVKPLYD 36 (134)
T ss_dssp HTT-SEEEESS--SEEEEE--S-TTHHHHH
T ss_pred hCCceEEEEeC--CEEEEeCCC-ChHHHHH
Confidence 36799999975 567766665 9999983
No 60
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=23.85 E-value=96 Score=23.47 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.5
Q ss_pred cHHHHHhcccCceEEEEEECCCCEE
Q 027478 120 PPNHVVGHLSGYFAFIVYDKSTSTL 144 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l 144 (223)
.+.++++..+|.|++..|--+.+.+
T Consensus 73 glVDFpa~~Ng~~~~lCWK~DE~~i 97 (123)
T COG4911 73 GLVDFPAIINGKPAFLCWKIDENDI 97 (123)
T ss_pred ccccchhhhCCceEEEEEecCCcce
Confidence 4678999999999999997665554
No 61
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=23.36 E-value=80 Score=25.43 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=18.3
Q ss_pred CCCCcchHHHHHHHhHcCCC
Q 027478 23 TPSPKTTSTALVDRFLQTNS 42 (223)
Q Consensus 23 ~~~~~~~~~~m~~~l~~RGp 42 (223)
+++|.+.+.+++..|+.||-
T Consensus 12 ~SGKTTLie~lv~~L~~~G~ 31 (161)
T COG1763 12 NSGKTTLIEKLVRKLKARGY 31 (161)
T ss_pred CCChhhHHHHHHHHHHhCCc
Confidence 68899999999999999985
No 62
>COG4315 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.90 E-value=87 Score=24.23 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=22.4
Q ss_pred HhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEe
Q 027478 125 VGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGIT 161 (223)
Q Consensus 125 l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~ 161 (223)
-.+-+|.|+++.-+. ++.--+.| | +|||+...
T Consensus 86 ~dka~Gdysii~RkD--Gt~QWa~d--G-kPLY~w~k 117 (138)
T COG4315 86 ADKASGDYSIIARKD--GTKQWAYD--G-KPLYLWVK 117 (138)
T ss_pred ccccCCCeeeEEecC--chhhhhcC--C-ceeEEEee
Confidence 356789999888753 44444555 5 99998875
Done!