Query 027478
Match_columns 223
No_of_seqs 186 out of 1539
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 17:41:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 1E-34 3.6E-39 273.3 18.5 181 2-202 1-196 (553)
2 1ao0_A Glutamine phosphoribosy 100.0 4.3E-33 1.5E-37 257.0 16.5 197 2-216 1-253 (459)
3 1xff_A D-fructose-6-, glucosam 100.0 3.9E-32 1.4E-36 230.9 18.8 175 2-198 1-224 (240)
4 1ecf_A Glutamine phosphoribosy 100.0 1.2E-29 4E-34 236.6 22.0 199 2-216 1-269 (504)
5 2bpl_A Glucosamine--fructose-6 100.0 9.2E-29 3.1E-33 235.1 15.9 175 2-198 1-224 (608)
6 1jgt_A Beta-lactam synthetase; 99.9 1.2E-25 4.2E-30 209.9 12.2 128 38-188 40-189 (513)
7 1q15_A CARA; CMPR, (2S,5S)-5-c 99.9 5.8E-24 2E-28 198.1 5.0 125 51-188 26-182 (503)
8 3mdn_A Glutamine aminotransfer 99.8 9.8E-21 3.3E-25 163.9 11.7 137 52-197 82-256 (274)
9 1te5_A Conserved hypothetical 99.7 1.5E-19 5.1E-24 155.0 0.8 135 52-197 72-247 (257)
10 1ea0_A Glutamate synthase [NAD 99.5 1E-13 3.5E-18 140.5 9.8 138 51-196 202-393 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.4 1.4E-12 4.8E-17 132.5 11.7 162 27-196 145-392 (1520)
12 1vk9_A Conserved hypothetical 34.3 8.4 0.00029 29.7 -0.0 27 129-158 27-53 (151)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=1e-34 Score=273.29 Aligned_cols=181 Identities=23% Similarity=0.386 Sum_probs=151.2
Q ss_pred eeeeeccccCCc-hhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEec---CCCCCCCceEeeCCcEE
Q 027478 2 LGVFSSAIVSPP-EELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (223)
Q Consensus 2 ~gi~~~~~~~~~-~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~lg~~r~---~~~~~~QP~~~~~~~~~ 77 (223)
|||+|.....+. .. ....+.+|++.|+|||||+.+++..++++|||+|. +...+.||+.+.+++++
T Consensus 1 CGI~G~~~~~~~~~~----------~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~ 70 (553)
T 1ct9_A 1 ASIFGVFDIKTDAVE----------LRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHV 70 (553)
T ss_dssp CEEEEEESCCSCHHH----------HHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEE
T ss_pred CEEEEEEcCCCcchh----------HHHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEE
Confidence 999997621110 01 14567799999999999999999998999999992 33368999998778899
Q ss_pred EEEEEEEecchhhHHhcC----C-CCCccHHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCC
Q 027478 78 CLFEGALDNLGSLRQQYG----L-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (223)
Q Consensus 78 lv~nGeI~N~~~L~~~lg----~-~~sd~e~~~~l~l~~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G 152 (223)
++|||+|||+.+|+++|. + +.+|+|++ +++|++|| .+++++|+|+|||++||.++++++++||++|
T Consensus 71 lv~NGeIyN~~eLr~~L~~~~~f~s~sDtEvi--l~l~~~~g-------~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G 141 (553)
T 1ct9_A 71 LAVNGEIYNHQALRAEYGDRYQFQTGSDCEVI--LALYQEKG-------PEFLDDLQGMFAFALYDSEKDAYLIGRDHLG 141 (553)
T ss_dssp EEEEEEETTHHHHHHHHTTTSCCCSCCTTHHH--HHHHHHHT-------TTTGGGCCEEEEEEEEETTTTEEEEEECTTC
T ss_pred EEEEEEEECHHHHHHHHhccCccCCCCcHHHH--HHHHHHHH-------HHHHHhCCccEEEEEEECCCCEEEEEECCCC
Confidence 999999999999999984 2 78999997 79999998 7899999999999999998899999999999
Q ss_pred CccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCeEEeeCCCCc
Q 027478 153 KVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGLRSFENPKNK 202 (223)
Q Consensus 153 ~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~~~~~~~~~~ 202 (223)
+|||||+...++.++||||+++|...+. .+..+|| ..+++++|..+.|.
T Consensus 142 ~~PLy~~~~~~~~~~faSe~~al~~~~~-~i~~l~pG~~~~~~~g~~~~yw~~~~~ 196 (553)
T 1ct9_A 142 IIPLYMGYDEHGQLYVASEMKALVPVCR-TIKEFPAGSYLWSQDGEIRSYYHRDWF 196 (553)
T ss_dssp CSCCEEEECTTCCEEEESSGGGTTTTCS-EEEECCTTEEEETTTCSEEECCCCGGG
T ss_pred CCCeEEEEecCCEEEEeechHHHHhhcC-CEEEECCCeEEEEcCCcEEEeecCCcc
Confidence 9999999953567999999999987654 5888888 34567787766543
No 2
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=100.00 E-value=4.3e-33 Score=256.99 Aligned_cols=197 Identities=17% Similarity=0.141 Sum_probs=154.3
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC---------------------------CcEE
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNVT 54 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~ 54 (223)
|||||...... ....+..|+.+|+|||||+.+++.. ++++
T Consensus 1 CGI~G~~~~~~-------------~~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~ 67 (459)
T 1ao0_A 1 CGVFGIWGHEE-------------APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGA 67 (459)
T ss_dssp CEEEEEESCTB-------------HHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEE
T ss_pred CEEEEEECCcc-------------hHHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEE
Confidence 99999863211 1345668999999999999998763 4689
Q ss_pred EEEEecC-----CCCCCCceEe---eCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC-C
Q 027478 55 LAYTHQN-----ESPLRQRSFA---VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (223)
Q Consensus 55 lg~~r~~-----~~~~~QP~~~---~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~-~ 119 (223)
|||+|.. ...+.||+.. .+++++++|||+|+|+.+|+++| |+ +.+|+|++ +++|.+|++... +
T Consensus 68 igH~R~at~g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi--~~l~~~~~~~~~~~ 145 (459)
T 1ao0_A 68 IGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVL--AHLIKRSGHFTLKD 145 (459)
T ss_dssp EEEEECCC----CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHH--HHHHHTCCCSSHHH
T ss_pred EEEEecCCCCCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhccCCHHH
Confidence 9999932 1257899986 45789999999999999999988 43 78888887 789998763211 3
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCCe
Q 027478 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGGL 193 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~~ 193 (223)
++.+++++|+|+|||++|| .++|+++||++|+|||||+.. ++.++||||.++|.....+.+..+|| +.+++
T Consensus 146 a~~~~~~~l~G~fa~~i~d--~~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~ 222 (459)
T 1ao0_A 146 QIKNSLSMLKGAYAFLIMT--ETEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGM 222 (459)
T ss_dssp HHHHHHTTCCEEEEEEEEC--SSEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEE
T ss_pred HHHHHHHhhccceEEEEEe--CCEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCce
Confidence 4578999999999999999 479999999999999999998 57899999999998876667888888 55666
Q ss_pred EEeeCCCCc--------cccccCCcccccCc
Q 027478 194 RSFENPKNK--------ITAVPAAEEEIWGA 216 (223)
Q Consensus 194 ~~~~~~~~~--------~~~~~r~~s~~~g~ 216 (223)
++.....+. ..|++|+||.+-|.
T Consensus 223 ~~~~~~~~~~~~~c~feyiyfarp~s~~~~~ 253 (459)
T 1ao0_A 223 KSERFSMNINRSICSMEYIYFSRPDSNIDGI 253 (459)
T ss_dssp EEEESCSSCCCCEEHHHHHTTSCTTCEETTE
T ss_pred EEEecCCCccccccceeeeeccCCcchhccH
Confidence 655443221 23779999875543
No 3
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=100.00 E-value=3.9e-32 Score=230.93 Aligned_cols=175 Identities=16% Similarity=0.209 Sum_probs=141.6
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceE-E---------------------------CCcE
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQ-V---------------------------GDNV 53 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~-~---------------------------~~~~ 53 (223)
|||||.....+ ....+..|++.|+|||||+.+++ . .+++
T Consensus 1 CGI~G~~~~~~-------------~~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~ 67 (240)
T 1xff_A 1 CGIVGAIAQRD-------------VAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGT 67 (240)
T ss_dssp CEEEEEECSSC-------------CHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSE
T ss_pred CcEEEEEcCcc-------------hHHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccE
Confidence 99999863211 13567799999999999999988 6 3579
Q ss_pred EEEEEec---C--CCCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC---C
Q 027478 54 TLAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (223)
Q Consensus 54 ~lg~~r~---~--~~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~---~ 119 (223)
+|||+|. . ...+.||+.+ ++++++|||+|||+.+|+++| |+ +.+|+|++ +++|+.|+..|. +
T Consensus 68 ~igH~R~at~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi--~~l~~~~~~~g~~~~~ 143 (240)
T 1xff_A 68 GIAHTRWATHGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVI--AHLVNWELKQGGTLRE 143 (240)
T ss_dssp EEEEEECCSSSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHH--HHHHHHHHHTSSCHHH
T ss_pred EEEEEeccCCCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHHHHhcCCCHHH
Confidence 9999992 2 2367899987 789999999999999999988 44 78899987 689998864332 3
Q ss_pred cHHHHHhcccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCC
Q 027478 120 PPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGG 192 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~-~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~ 192 (223)
++.+++++|+|+|||++||.. .++|+++||+ |||||+.. ++.++||||.++|...+.+ +..+|| +.++
T Consensus 144 ai~~~~~~l~G~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~l~pG~~~~i~~~~ 218 (240)
T 1xff_A 144 AVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRR-FIFLEEGDIAEITRRS 218 (240)
T ss_dssp HHHHHGGGCCEEEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSE-EEECCTTCEEEECSSC
T ss_pred HHHHHHHhcccceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCCe-EEEECCCEEEEEECCe
Confidence 455899999999999999975 6899999997 99999997 5679999999999888765 677877 5556
Q ss_pred eEEeeC
Q 027478 193 LRSFEN 198 (223)
Q Consensus 193 ~~~~~~ 198 (223)
++.+..
T Consensus 219 ~~~~~~ 224 (240)
T 1xff_A 219 VNIFDK 224 (240)
T ss_dssp EEEECT
T ss_pred EEEEeC
Confidence 666654
No 4
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.97 E-value=1.2e-29 Score=236.57 Aligned_cols=199 Identities=16% Similarity=0.131 Sum_probs=151.9
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC----------------------------CcE
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DNV 53 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----------------------------~~~ 53 (223)
|||||.....+ ....+..|+..|+|||||+.+++.. +++
T Consensus 1 CGI~G~~~~~~-------------~~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~ 67 (504)
T 1ecf_A 1 CGIVGIAGVMP-------------VNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNM 67 (504)
T ss_dssp CEEEEEECSSC-------------CHHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSE
T ss_pred CEEEEEEcChh-------------HHHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCE
Confidence 99999873211 1346779999999999999998753 358
Q ss_pred EEEEEec-----CCCCCCCceEeeC-CcEEEEEEEEEecchhhHHhc---C-C---CCCccHHHHHHHHHHHhhcc-CC-
Q 027478 54 TLAYTHQ-----NESPLRQRSFAVK-DEIFCLFEGALDNLGSLRQQY---G-L---AKSANEVILVIEAYKALRDR-AP- 118 (223)
Q Consensus 54 ~lg~~r~-----~~~~~~QP~~~~~-~~~~lv~nGeI~N~~~L~~~l---g-~---~~sd~e~~~~l~l~~~~g~~-g~- 118 (223)
+|||+|. ....+.||+.... .+++++|||+|+|+.+|+++| + . +.+|||++ +++|.++... |.
T Consensus 68 ~igH~R~sT~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi--~~l~~~~~~~~g~~ 145 (504)
T 1ecf_A 68 GIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEIL--LNIFASELDNFRHY 145 (504)
T ss_dssp EEEEEECCBTTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHH--HHHHHHHHTTCCSS
T ss_pred EEEEEccCcCCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHH--HHHHHHHHHhcccc
Confidence 9999992 2236899998643 469999999999999999887 2 2 78899987 6888876321 11
Q ss_pred --------CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEec--C--CEEEEEechhhHhhhcccccccc
Q 027478 119 --------YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA--D--GHVAFADDADLLKGACGKSLASF 186 (223)
Q Consensus 119 --------~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~--d--g~~~faSe~~aL~~~~~~~~~~~ 186 (223)
+++.+++++|+|+|||++|+. .++|+++||++|+|||||+..+ + +.++||||.++|.....+.++.+
T Consensus 146 ~~~~~~~~~a~~~~~~~l~G~fa~v~~~~-~~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l 224 (504)
T 1ecf_A 146 PLEADNIFAAIAATNRLIRGAYACVAMII-GHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDV 224 (504)
T ss_dssp SCCHHHHHHHHHHHHHHCCEEEEEEEEET-TTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEEC
T ss_pred ccccccHHHHHHHhhhhcCccceEEEEEc-CCeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEEC
Confidence 234578999999999999985 4589999999999999999972 3 37999999999998876668888
Q ss_pred CC------CCCC-eEEee---CCCCccc-----cccCCcccccCc
Q 027478 187 PQ------AVGG-LRSFE---NPKNKIT-----AVPAAEEEIWGA 216 (223)
Q Consensus 187 P~------~~~~-~~~~~---~~~~~~~-----~~~r~~s~~~g~ 216 (223)
|| +.++ +.+.. .+.|..+ |++|+|+.|-+.
T Consensus 225 ~PGe~v~i~~~g~~~~~~~~~~~~~~~c~fe~iYfarP~s~i~~~ 269 (504)
T 1ecf_A 225 APGEAIYITEEGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKI 269 (504)
T ss_dssp CTTEEEEEETTCCEEEEECSSSCCCCCBHHHHHTTSCTTCEETTE
T ss_pred CCCeEEEEeCCCceecceecCCCCCCccEEEEehhcChHHHhhhc
Confidence 88 3344 44332 2233332 779999998877
No 5
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.96 E-value=9.2e-29 Score=235.06 Aligned_cols=175 Identities=16% Similarity=0.205 Sum_probs=141.6
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC----------------------------CcE
Q 027478 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DNV 53 (223)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----------------------------~~~ 53 (223)
|||||....++ ....+..|++.|.|||||+.+++.. +++
T Consensus 1 CGI~G~~~~~~-------------~~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~ 67 (608)
T 2bpl_A 1 CGIVGAIAQRD-------------VAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGT 67 (608)
T ss_dssp CEEEEEECSSC-------------CHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSE
T ss_pred CeEEEEEcCCc-------------hHHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCE
Confidence 99999863211 1456789999999999999998753 468
Q ss_pred EEEEEec---C--CCCCCCceEeeCCcEEEEEEEEEecchhhHHhc---CC---CCCccHHHHHHHHHHHhhccCC---C
Q 027478 54 TLAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (223)
Q Consensus 54 ~lg~~r~---~--~~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g~---~~sd~e~~~~l~l~~~~g~~g~---~ 119 (223)
+|||+|. + ...+.||+.+ ++++++|||+|+|+.+|+++| |+ +.+|||++ +++|++|-..|. +
T Consensus 68 ~igH~R~at~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi--~~l~~~~~~~g~~~~~ 143 (608)
T 2bpl_A 68 GIAHTRWATHGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVI--AHLVNWELKQGGTLRE 143 (608)
T ss_dssp EEEEEECCCSSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHH--HHHHHHHHTTCCCHHH
T ss_pred EEEEEccCCCCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHH--HHHHHHHHhcCCCHHH
Confidence 9999993 2 2357899987 789999999999999999988 54 78888887 789988732232 3
Q ss_pred cHHHHHhcccCceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccccccCC------CCCC
Q 027478 120 PPNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------AVGG 192 (223)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~-~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~------~~~~ 192 (223)
++.+++++|+|+|||++||... ++++++||+ |||||+.. ++.++||||.++|...+.. +..+|| +.++
T Consensus 144 av~~~~~~l~G~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~~-~~~l~~G~i~~i~~~~ 218 (608)
T 2bpl_A 144 AVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRR-FIFLEEGDIAEITRRS 218 (608)
T ss_dssp HHHHHGGGCCSSEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCCE-EEECCTTCEEEECSSC
T ss_pred HHHHHHHhhcCceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCCe-EEEECCCeEEEEECCe
Confidence 4568999999999999999877 899999997 99999997 5679999999999888654 677777 5667
Q ss_pred eEEeeC
Q 027478 193 LRSFEN 198 (223)
Q Consensus 193 ~~~~~~ 198 (223)
++.+..
T Consensus 219 ~~~~~~ 224 (608)
T 2bpl_A 219 VNIFDK 224 (608)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 777654
No 6
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.93 E-value=1.2e-25 Score=209.86 Aligned_cols=128 Identities=19% Similarity=0.273 Sum_probs=106.3
Q ss_pred HcCCCCCcceEECCcEEEEEEecCCCCCCCceEeeC----CcEEEEEEEEEecchhhHHhcCC---CCCccHHHHHHHHH
Q 027478 38 LQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVK----DEIFCLFEGALDNLGSLRQQYGL---AKSANEVILVIEAY 110 (223)
Q Consensus 38 ~~RGpd~~~~~~~~~~~lg~~r~~~~~~~QP~~~~~----~~~~lv~nGeI~N~~~L~~~lg~---~~sd~e~~~~l~l~ 110 (223)
.+|+|+..+.++.+ ....||++..+ ++++++|||+|||+.+|+++|++ +.+|+|++ +++|
T Consensus 40 ~~r~p~~~~~~~~~-----------~~~~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvi--l~l~ 106 (513)
T 1jgt_A 40 PQGERSLAATLVHA-----------PSVAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELV--LRLL 106 (513)
T ss_dssp TTGGGSCEEEEEEC-----------TTSCGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHH--HHHH
T ss_pred ccCCCccccceeeC-----------CccCCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHH--HHHH
Confidence 45777776654422 13479987654 68999999999999999999854 78899987 7999
Q ss_pred HHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhcc----------
Q 027478 111 KALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACG---------- 180 (223)
Q Consensus 111 ~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~---------- 180 (223)
++|| .+++++|+|+|||++||.. +++++||++|+|||||+.. ++.++||||+++|..++.
T Consensus 107 ~~~g-------~~~~~~l~G~fA~~i~d~~--~l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~ 176 (513)
T 1jgt_A 107 ERYD-------LHAFRLVNGRFATVVRTGD--RVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADAR 176 (513)
T ss_dssp HHHG-------GGGGGTCCEEEEEEEEETT--EEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSE
T ss_pred HHHh-------HHhHhhcCeeEEEEEEECC--EEEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCC
Confidence 9998 7899999999999999974 4999999999999999987 578999999999988762
Q ss_pred -----ccccccCC
Q 027478 181 -----KSLASFPQ 188 (223)
Q Consensus 181 -----~~~~~~P~ 188 (223)
+.+..+||
T Consensus 177 ~~t~~~~i~~l~p 189 (513)
T 1jgt_A 177 RVAGLTGVYQVPA 189 (513)
T ss_dssp ECSSCSSCEECCT
T ss_pred ccccccceEEcCC
Confidence 45777777
No 7
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.88 E-value=5.8e-24 Score=198.07 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=106.8
Q ss_pred CcEEEEEEe--cCCCCCCCceEeeCCcEEEEEEEEEecch---hhHHhcC--C-CCCccHHHHHHHHHHHhhccCCCcHH
Q 027478 51 DNVTLAYTH--QNESPLRQRSFAVKDEIFCLFEGALDNLG---SLRQQYG--L-AKSANEVILVIEAYKALRDRAPYPPN 122 (223)
Q Consensus 51 ~~~~lg~~r--~~~~~~~QP~~~~~~~~~lv~nGeI~N~~---~L~~~lg--~-~~sd~e~~~~l~l~~~~g~~g~~~~~ 122 (223)
+.++|||+| .....+.||+.+.+++++++ |+|||+. +|+++|. . +.+|+|++ +++|++|| .
T Consensus 26 ~~~~igh~R~~t~~~~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvi--l~l~~~~g-------~ 94 (503)
T 1q15_A 26 KGEALSNGYLFIEQNGHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELL--ALLFTRLG-------A 94 (503)
T ss_dssp EEEEETTEEEEEETTCCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHH--HHHHHHHC-------G
T ss_pred CceeEeeeeEEEcCCCCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHH--HHHHHHHH-------H
Confidence 478999999 33457899999876777777 9999999 9999883 2 78999997 79999998 7
Q ss_pred HHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCE-----------------EEEEechhhHhhh--c----
Q 027478 123 HVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGH-----------------VAFADDADLLKGA--C---- 179 (223)
Q Consensus 123 ~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~-----------------~~faSe~~aL~~~--~---- 179 (223)
+++++|+|+|||++||..++ ++++|||+|+|||||+.. ++. ++||||+++|... +
T Consensus 95 ~~l~~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T 172 (503)
T 1q15_A 95 NALALAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYT 172 (503)
T ss_dssp GGGGGCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCC
T ss_pred HHHHHcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCc
Confidence 89999999999999998878 999999999999999987 567 9999999999875 1
Q ss_pred -cccccccCC
Q 027478 180 -GKSLASFPQ 188 (223)
Q Consensus 180 -~~~~~~~P~ 188 (223)
-+.+..+||
T Consensus 173 ~~~~v~~l~p 182 (503)
T 1q15_A 173 PVKNAQRLKP 182 (503)
T ss_dssp SBTTEEECCS
T ss_pred ccCCeEEECC
Confidence 235777777
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.84 E-value=9.8e-21 Score=163.87 Aligned_cols=137 Identities=13% Similarity=0.085 Sum_probs=99.7
Q ss_pred cEEEEEEec-----CCCCCCCceEeeCCcEEEEEEEEEecchhhHHhc---C--------CCCCccHHHHHHHHHHHhhc
Q 027478 52 NVTLAYTHQ-----NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---G--------LAKSANEVILVIEAYKALRD 115 (223)
Q Consensus 52 ~~~lg~~r~-----~~~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l---g--------~~~sd~e~~~~l~l~~~~g~ 115 (223)
.++|||+|. ....+.||+.. ++++++|||+|+|+++|+++| | .+.+|||++ +++|..++.
T Consensus 82 ~~~igHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi--~~l~~~~~~ 157 (274)
T 3mdn_A 82 GLFLSHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVL--FLLALSEGL 157 (274)
T ss_dssp EEEEEEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHH--HHHHHHTTT
T ss_pred CEEEEEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHH--HHHHHHhhh
Confidence 468999992 22467999986 689999999999999999877 3 157888887 678866653
Q ss_pred cC-C-CcHHHHHhcccCc-----------eEEEEEECCCCEEEEEEcC-CCCccEEEEEecC--CEEEEEechhhHhhhc
Q 027478 116 RA-P-YPPNHVVGHLSGY-----------FAFIVYDKSTSTLFVASDQ-FGKVPLYWGITAD--GHVAFADDADLLKGAC 179 (223)
Q Consensus 116 ~g-~-~~~~~~l~~L~G~-----------fa~vi~d~~~~~l~laRD~-~G~~PLyy~~~~d--g~~~faSe~~aL~~~~ 179 (223)
.. + +++.+++++|+|. |+|+++|. ++|+++||+ +|.+||+|+...+ +.++||||. |...+
T Consensus 158 ~~~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~ 233 (274)
T 3mdn_A 158 EHDPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDE 233 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CC
T ss_pred cCCHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCC
Confidence 22 1 3567899999998 99999974 789999998 9999977777533 689999999 43333
Q ss_pred cccccccCC------CCCCeEEee
Q 027478 180 GKSLASFPQ------AVGGLRSFE 197 (223)
Q Consensus 180 ~~~~~~~P~------~~~~~~~~~ 197 (223)
..+..+|| +.++++.+.
T Consensus 234 -~~~~~v~pGeiv~i~~~~v~~~~ 256 (274)
T 3mdn_A 234 -GDWTELRPGRMLTIGAEGAAERD 256 (274)
T ss_dssp -SCCEECCSSEEEEEETTEEEEEE
T ss_pred -ceEEEECcCEEEEEeCCeEEEEE
Confidence 34777877 445555543
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.74 E-value=1.5e-19 Score=155.05 Aligned_cols=135 Identities=13% Similarity=0.064 Sum_probs=94.1
Q ss_pred cEEEEEEec-----CCCCCCCceEee--CCcEEEEEEEEEecchhhHHhcCC--CCCccHHHHHHHHHHHhhcc----CC
Q 027478 52 NVTLAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQYGL--AKSANEVILVIEAYKALRDR----AP 118 (223)
Q Consensus 52 ~~~lg~~r~-----~~~~~~QP~~~~--~~~~~lv~nGeI~N~~~L~~~lg~--~~sd~e~~~~l~l~~~~g~~----g~ 118 (223)
+++|||+|. ....+.||+... .++++++|||.|.|+++ +.+++. +.+|||++ ++++.+.... .+
T Consensus 72 ~~~IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi--~~li~~~~~~~~~~~~ 148 (257)
T 1te5_A 72 ETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPGFYRPVGETDSEAA--FCDLLNRVRRAFPEPV 148 (257)
T ss_dssp EEEEEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHH--HHHHHHHHHHHCSSCC
T ss_pred cEEEEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhccCCcccCCHHHHH--HHHHHHHHHHhcCCCc
Confidence 478999992 223679999864 45799999999999999 766543 78999987 4566443211 12
Q ss_pred --CcHHHHHhccc------CceEEEEEECCCCEEEEEEc----------CCCCccEEE-------EE---ecCCEEEEEe
Q 027478 119 --YPPNHVVGHLS------GYFAFIVYDKSTSTLFVASD----------QFGKVPLYW-------GI---TADGHVAFAD 170 (223)
Q Consensus 119 --~~~~~~l~~L~------G~fa~vi~d~~~~~l~laRD----------~~G~~PLyy-------~~---~~dg~~~faS 170 (223)
.++.+++++|. |.|++++.|. ++|+++|| |+|.+||+. +. ..+..++|||
T Consensus 149 ~~~a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvAS 226 (257)
T 1te5_A 149 PVEVLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIAT 226 (257)
T ss_dssp CHHHHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEES
T ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEe
Confidence 34556666665 9999999884 78999999 999999975 31 1123699999
Q ss_pred chhhHhhhccccccccCCCCCCeEEee
Q 027478 171 DADLLKGACGKSLASFPQAVGGLRSFE 197 (223)
Q Consensus 171 e~~aL~~~~~~~~~~~P~~~~~~~~~~ 197 (223)
|. |.. ....+.+|| |++..+.
T Consensus 227 E~--l~~--~~~wr~v~p--Ge~v~i~ 247 (257)
T 1te5_A 227 EP--LTD--NENWTLQQS--GEWVLWW 247 (257)
T ss_dssp SC--SSS--SSSCEEECT--TCEEEEE
T ss_pred Cc--cCC--CCCeeEeCC--CEEEEEE
Confidence 95 432 345666766 3344443
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.46 E-value=1e-13 Score=140.45 Aligned_cols=138 Identities=17% Similarity=0.149 Sum_probs=95.8
Q ss_pred CcEEEEEEec-----CCCCCCCceEeeCCcEEEEEEEEEecchhhHHhc------------C----------C-CCCccH
Q 027478 51 DNVTLAYTHQ-----NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY------------G----------L-AKSANE 102 (223)
Q Consensus 51 ~~~~lg~~r~-----~~~~~~QP~~~~~~~~~lv~nGeI~N~~~L~~~l------------g----------~-~~sd~e 102 (223)
+..+|||+|. +.-.+.||+. +++|||||.|+..+++.+ | . +.||||
T Consensus 202 g~~aigH~RySTnt~p~w~~AQPf~------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSe 275 (1479)
T 1ea0_A 202 SDFAIYHQRYSTNTFPTWPLAQPFR------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSG 275 (1479)
T ss_dssp BSEEEEEECCCSCSCCCSTTSSCCS------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHH
T ss_pred eeEEEeeecccCCCCCCcccCCccE------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHH
Confidence 4689999992 2225689994 389999999999988542 1 2 678999
Q ss_pred HHHH-HHHHHHhhccCCCcH-------------------------HHHHhcccCceEEEEEECCCCEEEEEEcCCCCccE
Q 027478 103 VILV-IEAYKALRDRAPYPP-------------------------NHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPL 156 (223)
Q Consensus 103 ~~~~-l~l~~~~g~~g~~~~-------------------------~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PL 156 (223)
++.. ++++.+.|..-++++ ..+++.++|.|++++.|. +.++++|||.|.|||
T Consensus 276 vld~~lelL~~~g~~l~~A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~dg--~~l~a~~DrnGlRPl 353 (1479)
T 1ea0_A 276 SLDTVFEVMVRAGRTAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRNGLRPM 353 (1479)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTTCCSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEeC--CEEEEEecCCCCcce
Confidence 8611 233322221000111 134689999999999874 899999999999999
Q ss_pred EEEEecCCEEEEEechhhHhhhccccccccCCCCCCeEEe
Q 027478 157 YWGITADGHVAFADDADLLKGACGKSLASFPQAVGGLRSF 196 (223)
Q Consensus 157 yy~~~~dg~~~faSe~~aL~~~~~~~~~~~P~~~~~~~~~ 196 (223)
.|+.++|+.+++|||.++|...+++.++.=...+|++...
T Consensus 354 ~~g~t~d~~~v~ASE~galdi~~a~~vrkg~l~PGemv~i 393 (1479)
T 1ea0_A 354 RYTITTDGLIIGGSETGMVKIDETQVIEKGRLGPGEMIAV 393 (1479)
T ss_dssp EEEEETTSEEEECSSSTTSCCCGGGEEEEEECCTTCEEEE
T ss_pred EEEEECCCEEEEEcccccccCcchheeeccCCCCCeEEEE
Confidence 9999877789999999999766665554112233444444
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.38 E-value=1.4e-12 Score=132.53 Aligned_cols=162 Identities=13% Similarity=0.043 Sum_probs=108.9
Q ss_pred cchHHHHHHHhHcCCCCCcceE-----------------------------ECCcEEEEEEecCC-----CCCCCceEee
Q 027478 27 KTTSTALVDRFLQTNSSAVSVQ-----------------------------VGDNVTLAYTHQNE-----SPLRQRSFAV 72 (223)
Q Consensus 27 ~~~~~~m~~~l~~RGpd~~~~~-----------------------------~~~~~~lg~~r~~~-----~~~~QP~~~~ 72 (223)
.+.+-.....+.||+.++..+. +.+..+|||+|.+. -.+.||+.
T Consensus 145 ~r~ly~~r~~le~~~~~~~yI~S~s~~~~vyKgmgl~~~v~~~y~dL~~~~~~g~~aigH~RySTnt~p~w~~AQPf~-- 222 (1520)
T 1ofd_A 145 DRRLYIARSIIGKKLAEDFYVCSFSCRTIVYKGMVRSIILGEFYLDLKNPGYTSNFAVYHRRFSTNTMPKWPLAQPMR-- 222 (1520)
T ss_dssp HHHHHHHHHHHGGGCBTTBEEEEEESSEEEEEESSCHHHHHHHBHHHHCTTCCBSEEEEEECCCSSSCCCGGGSSCCS--
T ss_pred HHHHHHHHHHHHhhccCCEEEEEecCcEEEEeCCccHHHHhhhhhhccccccceeEEEEEccccCCCCCCcccCCchh--
Confidence 4566678888899984322221 13468999999322 24589984
Q ss_pred CCcEEEEEEEEEecchhhH------Hh-----------c---C-C---CCCccHHHH-HHHHHHHhhccCCCcH------
Q 027478 73 KDEIFCLFEGALDNLGSLR------QQ-----------Y---G-L---AKSANEVIL-VIEAYKALRDRAPYPP------ 121 (223)
Q Consensus 73 ~~~~~lv~nGeI~N~~~L~------~~-----------l---g-~---~~sd~e~~~-~l~l~~~~g~~g~~~~------ 121 (223)
+|+|||||.|...++ +. | + . +.||||++. +++++.+.|..-++++
T Consensus 223 ----~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SDSe~ld~~lelL~~~g~~l~~A~~~liPe 298 (1520)
T 1ofd_A 223 ----LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSDSYNLDSALELLVRTGRSPLEAAMILVPE 298 (1520)
T ss_dssp ----SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHSCC
T ss_pred ----eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCcHHHHHHHHHHHHhcCCCHHHHHHHhCcc
Confidence 389999998887776 21 1 3 2 778999862 1233333221000111
Q ss_pred ---------------------HHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhcc
Q 027478 122 ---------------------NHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACG 180 (223)
Q Consensus 122 ---------------------~~~l~~L~G~fa~vi~d~~~~~l~laRD~~G~~PLyy~~~~dg~~~faSe~~aL~~~~~ 180 (223)
..+++.++|+|++++.|. +.++++|||.|.|||.|+.++|+.+++|||.++|...++
T Consensus 299 aw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~DrnGlRPl~~~~t~d~~~v~ASE~galdi~~a 376 (1520)
T 1ofd_A 299 AYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRNGLRPARYCITKDDYIVLGSEAGVVDLPEV 376 (1520)
T ss_dssp CCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTTCCSCCEEEEETTCCEEEESSTTCSCCCGG
T ss_pred hhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCCCCCceEEEEeCCCEEEEEcccccccCcch
Confidence 123588999999999985 899999999999999999997678999999999976666
Q ss_pred ccccccCCCCCCeEEe
Q 027478 181 KSLASFPQAVGGLRSF 196 (223)
Q Consensus 181 ~~~~~~P~~~~~~~~~ 196 (223)
+.++.=...+|++...
T Consensus 377 ~~vrkg~l~PGemv~i 392 (1520)
T 1ofd_A 377 DIVEKGRLAPGQMIAV 392 (1520)
T ss_dssp GEEEEEECCTTCEEEE
T ss_pred heeeccCCCCCeEEEE
Confidence 6555222234444444
No 12
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=34.33 E-value=8.4 Score=29.70 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=21.1
Q ss_pred cCceEEEEEECCCCEEEEEEcCCCCccEEE
Q 027478 129 SGYFAFIVYDKSTSTLFVASDQFGKVPLYW 158 (223)
Q Consensus 129 ~G~fa~vi~d~~~~~l~laRD~~G~~PLyy 158 (223)
+|.|++++.+ .+.++-..++ |++|||=
T Consensus 27 e~~~ScVv~~--~~~i~ts~~r-Gv~pL~~ 53 (151)
T 1vk9_A 27 KKDLSLLAYS--GRSIFESKDS-GLKPVVE 53 (151)
T ss_dssp HTTCSEEEES--SSEEEEECCS-TTHHHHH
T ss_pred hCCeeEEEec--CCEEEEeCCc-ChHHHHH
Confidence 4789999954 4678887775 9999983
Done!