Query 027479
Match_columns 223
No_of_seqs 249 out of 1971
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 10:31:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0234 GroS Co-chaperonin Gro 100.0 7.1E-36 1.5E-40 231.1 9.6 94 59-152 1-95 (96)
2 PTZ00414 10 kDa heat shock pro 100.0 2E-34 4.4E-39 225.2 9.9 95 55-153 6-100 (100)
3 PRK00364 groES co-chaperonin G 100.0 1.1E-33 2.4E-38 218.5 10.7 94 59-152 1-95 (95)
4 PRK14533 groES co-chaperonin G 100.0 5E-33 1.1E-37 213.9 10.0 91 59-153 1-91 (91)
5 cd00320 cpn10 Chaperonin 10 Kd 100.0 1.4E-32 3E-37 211.6 10.3 92 60-151 1-93 (93)
6 PF00166 Cpn10: Chaperonin 10 100.0 1.3E-30 2.8E-35 199.9 10.3 92 60-151 1-93 (93)
7 KOG1641 Mitochondrial chaperon 100.0 6.2E-29 1.3E-33 194.1 6.7 98 54-151 4-103 (104)
8 COG0234 GroS Co-chaperonin Gro 99.9 4.2E-23 9.1E-28 160.0 6.9 65 157-221 1-78 (96)
9 PTZ00414 10 kDa heat shock pro 99.9 7.4E-23 1.6E-27 160.1 7.4 71 151-221 4-82 (100)
10 PRK14533 groES co-chaperonin G 99.8 2E-21 4.3E-26 149.6 7.4 65 157-221 1-73 (91)
11 KOG1641 Mitochondrial chaperon 99.8 1E-21 2.2E-26 153.6 5.6 72 150-221 2-86 (104)
12 PRK00364 groES co-chaperonin G 99.8 4.3E-21 9.2E-26 148.4 7.2 65 157-221 1-78 (95)
13 cd00320 cpn10 Chaperonin 10 Kd 99.8 3E-20 6.5E-25 143.1 7.1 64 158-221 1-77 (93)
14 PF00166 Cpn10: Chaperonin 10 99.8 1.1E-18 2.3E-23 133.9 6.2 64 158-221 1-77 (93)
15 COG1329 Transcriptional regula 81.4 1.2 2.7E-05 38.2 2.5 52 114-165 3-66 (166)
16 KOG1197 Predicted quinone oxid 78.5 1.6 3.5E-05 40.6 2.5 42 77-126 52-96 (336)
17 PF08240 ADH_N: Alcohol dehydr 78.1 2 4.3E-05 32.5 2.5 26 94-127 39-64 (109)
18 COG1062 AdhC Zn-dependent alco 70.3 3.3 7.2E-05 39.5 2.4 110 63-181 25-165 (366)
19 COG1064 AdhP Zn-dependent alco 66.2 13 0.00027 35.3 5.4 23 94-124 65-87 (339)
20 TIGR03366 HpnZ_proposed putati 65.5 6 0.00013 34.5 3.0 31 94-126 6-36 (280)
21 KOG0022 Alcohol dehydrogenase, 62.6 20 0.00044 34.3 6.0 102 62-172 29-163 (375)
22 PF02559 CarD_CdnL_TRCF: CarD- 62.2 10 0.00022 28.6 3.4 14 116-129 2-15 (98)
23 COG0604 Qor NADPH:quinone redu 59.7 12 0.00027 34.3 4.0 94 63-171 25-151 (326)
24 TIGR01202 bchC 2-desacetyl-2-h 59.4 10 0.00023 33.6 3.4 46 94-148 66-115 (308)
25 COG4384 Mu-like prophage prote 57.2 28 0.0006 30.8 5.5 44 94-142 79-129 (203)
26 KOG0025 Zn2+-binding dehydroge 53.2 23 0.00049 33.7 4.6 72 62-142 45-129 (354)
27 PF06890 Phage_Mu_Gp45: Bacter 52.9 56 0.0012 27.8 6.6 40 82-128 48-87 (162)
28 TIGR02819 fdhA_non_GSH formald 49.1 16 0.00034 34.2 3.0 24 94-125 69-92 (393)
29 cd08237 ribitol-5-phosphate_DH 47.7 34 0.00073 30.9 4.8 23 94-126 66-88 (341)
30 TIGR02822 adh_fam_2 zinc-bindi 44.9 32 0.00069 30.9 4.2 24 94-125 64-87 (329)
31 cd08230 glucose_DH Glucose deh 44.9 19 0.00041 32.4 2.7 23 94-125 65-87 (355)
32 KOG3409 Exosomal 3'-5' exoribo 44.3 67 0.0014 28.2 5.8 70 116-202 89-160 (193)
33 COG3450 Predicted enzyme of th 42.2 54 0.0012 26.6 4.6 66 77-143 43-115 (116)
34 cd05279 Zn_ADH1 Liver alcohol 41.1 56 0.0012 29.6 5.2 24 94-125 61-84 (365)
35 PLN02586 probable cinnamyl alc 38.5 28 0.0006 31.8 2.8 23 94-124 74-96 (360)
36 cd08281 liver_ADH_like1 Zinc-d 37.9 29 0.00062 31.6 2.8 23 94-124 69-91 (371)
37 TIGR00739 yajC preprotein tran 37.5 62 0.0013 24.4 4.1 28 114-142 36-64 (84)
38 cd08269 Zn_ADH9 Alcohol dehydr 36.3 63 0.0014 27.7 4.5 27 94-128 59-85 (312)
39 PRK10309 galactitol-1-phosphat 35.8 31 0.00067 30.8 2.6 25 93-125 60-84 (347)
40 PF00235 Profilin: Profilin; 35.1 1.5E+02 0.0032 22.8 6.0 46 130-203 59-104 (121)
41 PF08140 Cuticle_1: Crustacean 34.4 44 0.00096 22.4 2.5 25 80-104 2-28 (40)
42 PLN02178 cinnamyl-alcohol dehy 34.2 35 0.00077 31.5 2.8 23 94-124 68-90 (375)
43 smart00696 DM9 Repeats found i 33.8 1E+02 0.0022 22.4 4.7 55 85-142 12-68 (71)
44 cd08293 PTGR2 Prostaglandin re 33.7 37 0.0008 30.0 2.7 24 94-125 76-99 (345)
45 cd08238 sorbose_phosphate_red 33.6 36 0.00078 31.6 2.8 25 94-125 70-94 (410)
46 PF10844 DUF2577: Protein of u 33.0 38 0.00083 26.1 2.4 24 113-142 74-97 (100)
47 cd08301 alcohol_DH_plants Plan 32.8 36 0.00077 30.8 2.5 24 94-125 64-87 (369)
48 cd08292 ETR_like_2 2-enoyl thi 32.7 70 0.0015 27.6 4.2 26 93-126 65-90 (324)
49 PLN02827 Alcohol dehydrogenase 32.0 38 0.00082 31.2 2.6 24 94-125 71-94 (378)
50 cd08300 alcohol_DH_class_III c 31.5 42 0.00092 30.4 2.8 24 94-125 64-87 (368)
51 cd08239 THR_DH_like L-threonin 31.0 45 0.00097 29.5 2.8 24 94-125 62-85 (339)
52 TIGR00523 eIF-1A eukaryotic/ar 30.2 16 0.00036 28.6 -0.1 35 114-159 56-91 (99)
53 TIGR02818 adh_III_F_hyde S-(hy 29.9 47 0.001 30.3 2.8 24 94-125 63-86 (368)
54 PRK10083 putative oxidoreducta 29.8 52 0.0011 28.9 3.0 24 94-125 61-84 (339)
55 PLN02740 Alcohol dehydrogenase 29.8 43 0.00093 30.7 2.6 24 94-125 73-96 (381)
56 TIGR02817 adh_fam_1 zinc-bindi 29.1 50 0.0011 28.8 2.8 24 94-125 66-89 (336)
57 TIGR03451 mycoS_dep_FDH mycoth 29.0 49 0.0011 29.8 2.8 23 94-124 62-84 (358)
58 PLN02514 cinnamyl-alcohol dehy 28.6 51 0.0011 29.9 2.8 23 94-124 71-93 (357)
59 cd08260 Zn_ADH6 Alcohol dehydr 28.0 64 0.0014 28.5 3.2 23 94-124 62-84 (345)
60 PRK06531 yajC preprotein trans 27.8 1.2E+02 0.0026 24.5 4.4 44 114-157 35-80 (113)
61 KOG0024 Sorbitol dehydrogenase 27.4 26 0.00057 33.5 0.7 55 64-126 28-93 (354)
62 PF01957 NfeD: NfeD-like C-ter 27.4 2.4E+02 0.0051 21.7 6.1 16 131-146 106-121 (144)
63 cd08277 liver_alcohol_DH_like 27.0 52 0.0011 29.8 2.6 24 94-125 63-86 (365)
64 cd08266 Zn_ADH_like1 Alcohol d 26.6 80 0.0017 27.1 3.5 24 94-125 65-88 (342)
65 cd08233 butanediol_DH_like (2R 26.2 59 0.0013 28.9 2.7 23 94-124 72-94 (351)
66 cd08264 Zn_ADH_like2 Alcohol d 26.1 62 0.0014 28.2 2.8 24 94-125 62-85 (325)
67 cd08255 2-desacetyl-2-hydroxye 25.0 98 0.0021 26.3 3.8 25 93-125 27-51 (277)
68 cd08287 FDH_like_ADH3 formalde 24.7 62 0.0013 28.5 2.5 23 94-124 61-83 (345)
69 TIGR00692 tdh L-threonine 3-de 24.6 63 0.0014 28.6 2.6 24 94-125 63-86 (340)
70 cd08261 Zn_ADH7 Alcohol dehydr 24.0 69 0.0015 28.2 2.7 24 93-124 60-83 (337)
71 cd07376 PLPDE_III_DSD_D-TA_lik 23.8 1E+02 0.0023 27.9 3.9 38 114-152 304-342 (345)
72 TIGR02227 sigpep_I_bact signal 23.5 3.5E+02 0.0075 22.2 6.6 59 64-138 36-95 (163)
73 cd05278 FDH_like Formaldehyde 23.5 70 0.0015 28.1 2.6 23 94-124 62-84 (347)
74 cd08285 NADP_ADH NADP(H)-depen 23.4 73 0.0016 28.4 2.8 24 94-125 61-84 (351)
75 cd08278 benzyl_alcohol_DH Benz 22.9 71 0.0015 28.9 2.6 23 94-124 63-85 (365)
76 smart00829 PKS_ER Enoylreducta 22.8 1.3E+02 0.0028 24.8 4.0 26 94-127 31-56 (288)
77 cd08291 ETR_like_1 2-enoyl thi 22.6 79 0.0017 27.8 2.8 25 94-125 68-92 (324)
78 cd05188 MDR Medium chain reduc 22.5 83 0.0018 25.9 2.8 25 94-126 37-61 (271)
79 TIGR00498 lexA SOS regulatory 22.5 3.1E+02 0.0067 22.9 6.3 70 114-200 124-195 (199)
80 PF09871 DUF2098: Uncharacteri 22.3 1.6E+02 0.0034 22.9 4.0 34 115-148 2-40 (91)
81 cd08262 Zn_ADH8 Alcohol dehydr 22.3 75 0.0016 27.9 2.6 24 94-125 71-95 (341)
82 cd08283 FDH_like_1 Glutathione 22.2 78 0.0017 29.0 2.8 24 94-125 62-85 (386)
83 cd08235 iditol_2_DH_like L-idi 22.0 75 0.0016 27.9 2.6 25 93-125 60-84 (343)
84 cd08284 FDH_like_2 Glutathione 21.9 77 0.0017 27.9 2.6 23 94-124 61-83 (344)
85 cd08286 FDH_like_ADH2 formalde 21.7 82 0.0018 27.8 2.7 24 94-125 62-85 (345)
86 cd05283 CAD1 Cinnamyl alcohol 21.3 85 0.0018 27.8 2.8 23 94-124 61-83 (337)
87 cd05284 arabinose_DH_like D-ar 21.3 86 0.0019 27.5 2.8 24 94-125 65-88 (340)
88 cd08236 sugar_DH NAD(P)-depend 20.8 85 0.0018 27.6 2.6 25 93-125 59-83 (343)
89 cd08273 MDR8 Medium chain dehy 20.7 1.6E+02 0.0035 25.4 4.3 25 94-126 65-89 (331)
90 PF08206 OB_RNB: Ribonuclease 20.5 86 0.0019 21.6 2.1 12 63-74 33-44 (58)
91 cd08282 PFDH_like Pseudomonas 20.5 89 0.0019 28.4 2.8 23 94-124 61-83 (375)
92 PRK05396 tdh L-threonine 3-deh 20.2 93 0.002 27.5 2.8 24 94-125 65-88 (341)
93 PF15057 DUF4537: Domain of un 20.2 2.9E+02 0.0062 22.1 5.4 39 132-172 30-68 (124)
No 1
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-36 Score=231.08 Aligned_cols=94 Identities=53% Similarity=0.844 Sum_probs=90.5
Q ss_pred ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCC-eeeecccCCcEEEecCCCceEEEEcCe
Q 027479 59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGA 137 (223)
Q Consensus 59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~-~vp~~VkvGD~Vlf~ky~G~eV~~dg~ 137 (223)
++|+||+|||||++.++|++|+|||+||+++++||+.|+|||||+|..++++ .+|++||+||+|+|++|+|+++++||+
T Consensus 1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge 80 (96)
T COG0234 1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGE 80 (96)
T ss_pred CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCE
Confidence 5799999999999999999999999999999999999999999999988876 589999999999999999999999999
Q ss_pred eeEEEeccceeeeee
Q 027479 138 NHLILREDDVVGILE 152 (223)
Q Consensus 138 ~y~ilre~DIlaii~ 152 (223)
+|+||+++||||+++
T Consensus 81 eylil~e~DILAiv~ 95 (96)
T COG0234 81 EYLILSESDILAIVE 95 (96)
T ss_pred EEEEechHHeeEEec
Confidence 999999999999986
No 2
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=100.00 E-value=2e-34 Score=225.18 Aligned_cols=95 Identities=29% Similarity=0.587 Sum_probs=89.1
Q ss_pred ccccccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCCeeeecccCCcEEEecCCCceEEEE
Q 027479 55 APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEF 134 (223)
Q Consensus 55 ~~~~~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky~G~eV~~ 134 (223)
++++++|+||+||||||+.++|++|+|||+||+++++||++|+|+|||+|+.. .|++||+||+|+|++|+|++|++
T Consensus 6 ~~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~----~~~~Vk~GD~Vl~~~y~Gtevk~ 81 (100)
T PTZ00414 6 VPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD----WTPTVKVGDTVLLPEFGGSSVKV 81 (100)
T ss_pred ccccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCcc----ccceecCCCEEEEcCCCCcEEEE
Confidence 35678899999999999999999999999999999999999999999999743 47899999999999999999999
Q ss_pred cCeeeEEEeccceeeeeec
Q 027479 135 NGANHLILREDDVVGILET 153 (223)
Q Consensus 135 dg~~y~ilre~DIlaii~~ 153 (223)
||++|++++|+||||+++.
T Consensus 82 dg~ey~i~~e~DILavi~~ 100 (100)
T PTZ00414 82 EGEEFFLYNEDSLLGVLQG 100 (100)
T ss_pred CCEEEEEEEhHHEEEEecC
Confidence 9999999999999999863
No 3
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=100.00 E-value=1.1e-33 Score=218.48 Aligned_cols=94 Identities=53% Similarity=0.895 Sum_probs=89.7
Q ss_pred ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCC-eeeecccCCcEEEecCCCceEEEEcCe
Q 027479 59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGA 137 (223)
Q Consensus 59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~-~vp~~VkvGD~Vlf~ky~G~eV~~dg~ 137 (223)
++|+||+|||||++.+++++|+|||+||+++++|++.|+|+|||+|+.+++| .+|++||+||+|+|++|+|++|++||+
T Consensus 1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~ 80 (95)
T PRK00364 1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGE 80 (95)
T ss_pred CcceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCE
Confidence 3699999999999999999999999999999999999999999999988776 489999999999999999999999999
Q ss_pred eeEEEeccceeeeee
Q 027479 138 NHLILREDDVVGILE 152 (223)
Q Consensus 138 ~y~ilre~DIlaii~ 152 (223)
+|+|++++||||+++
T Consensus 81 ~y~iv~~~DIlavi~ 95 (95)
T PRK00364 81 EYLILRESDILAIVE 95 (95)
T ss_pred EEEEEEHHHEEEEeC
Confidence 999999999999985
No 4
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=100.00 E-value=5e-33 Score=213.95 Aligned_cols=91 Identities=42% Similarity=0.727 Sum_probs=85.9
Q ss_pred ccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCCeeeecccCCcEEEecCCCceEEEEcCee
Q 027479 59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGAN 138 (223)
Q Consensus 59 ~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky~G~eV~~dg~~ 138 (223)
++|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||+|.. ..|++||+||+|+|++|+|++|+++|++
T Consensus 1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~----~~~~~Vk~GD~Vl~~~y~g~ev~~~~~~ 76 (91)
T PRK14533 1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDD----EEDFDIKVGDKVIFSKYAGTEIKIDDED 76 (91)
T ss_pred CCceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCCc----cccccccCCCEEEEccCCCeEEEECCEE
Confidence 479999999999999999999999999999999999999999999852 4589999999999999999999999999
Q ss_pred eEEEeccceeeeeec
Q 027479 139 HLILREDDVVGILET 153 (223)
Q Consensus 139 y~ilre~DIlaii~~ 153 (223)
|+|++++||||++++
T Consensus 77 y~iv~e~DILa~i~~ 91 (91)
T PRK14533 77 YIIIDVNDILAKIEE 91 (91)
T ss_pred EEEEEhHhEEEEeeC
Confidence 999999999999863
No 5
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=99.98 E-value=1.4e-32 Score=211.57 Aligned_cols=92 Identities=53% Similarity=0.897 Sum_probs=88.2
Q ss_pred cccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCCe-eeecccCCcEEEecCCCceEEEEcCee
Q 027479 60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAN 138 (223)
Q Consensus 60 ~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vlf~ky~G~eV~~dg~~ 138 (223)
+|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||+|+.++++. +|++||+||+|+|++|+|++|++||++
T Consensus 1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T cd00320 1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEE 80 (93)
T ss_pred CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEE
Confidence 4899999999999999999999999999999999999999999999888764 899999999999999999999999999
Q ss_pred eEEEeccceeeee
Q 027479 139 HLILREDDVVGIL 151 (223)
Q Consensus 139 y~ilre~DIlaii 151 (223)
|+|++++||||++
T Consensus 81 y~i~~~~DIla~i 93 (93)
T cd00320 81 YLILRESDILAVI 93 (93)
T ss_pred EEEEEHHHEEEEC
Confidence 9999999999985
No 6
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=99.97 E-value=1.3e-30 Score=199.88 Aligned_cols=92 Identities=51% Similarity=0.875 Sum_probs=85.0
Q ss_pred cccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCCe-eeecccCCcEEEecCCCceEEEEcCee
Q 027479 60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAN 138 (223)
Q Consensus 60 ~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vlf~ky~G~eV~~dg~~ 138 (223)
+|+||+|||||++.+++++|+|||+||++++++++.|+|||||+|+...++. +|++|++||+|+|++|+|+++++||++
T Consensus 1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T PF00166_consen 1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFDGEK 80 (93)
T ss_dssp EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEETTEE
T ss_pred CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEECCEE
Confidence 5899999999999999999999999999999999999999999999987764 899999999999999999999999999
Q ss_pred eEEEeccceeeee
Q 027479 139 HLILREDDVVGIL 151 (223)
Q Consensus 139 y~ilre~DIlaii 151 (223)
|++++++||+|++
T Consensus 81 ~~~~~~~dIlavi 93 (93)
T PF00166_consen 81 YLIVREDDILAVI 93 (93)
T ss_dssp EEEEEGGGEEEEE
T ss_pred EEEEEHHHeEEEC
Confidence 9999999999986
No 7
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.2e-29 Score=194.07 Aligned_cols=98 Identities=33% Similarity=0.503 Sum_probs=90.7
Q ss_pred cccccccccccCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCCe-eeecccCCcEEEecCCCceEE
Q 027479 54 VAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTEL 132 (223)
Q Consensus 54 ~~~~~~~lkPLgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vlf~ky~G~eV 132 (223)
..+.++++.|+.|||||++.++++||+|||+||+++++|.++|+|+|||||.++..+. +|.+||+||+|+|++|+|++|
T Consensus 4 ~~~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt~V 83 (104)
T KOG1641|consen 4 TSWEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGTKV 83 (104)
T ss_pred hhhhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCcEE
Confidence 3457889999999999999999999999999999999999999999999999987765 899999999999999999999
Q ss_pred EEcC-eeeEEEeccceeeee
Q 027479 133 EFNG-ANHLILREDDVVGIL 151 (223)
Q Consensus 133 ~~dg-~~y~ilre~DIlaii 151 (223)
++++ ++|++++++|+|+++
T Consensus 84 ~l~~~~~~~~fr~e~~l~~~ 103 (104)
T KOG1641|consen 84 KLGDEDEYHLFRDEDDLLAI 103 (104)
T ss_pred eccCCceeEEecchhhhhhh
Confidence 9974 699999999998875
No 8
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.2e-23 Score=160.03 Aligned_cols=65 Identities=38% Similarity=0.606 Sum_probs=61.2
Q ss_pred CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccCC-------------ceeecCCCCcEEEec
Q 027479 157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGG-------------PILFAAFPNTCITNN 221 (223)
Q Consensus 157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~~-------------~V~~~~~~Gt~i~~~ 221 (223)
|+|+||+|||||++.++|++|+|||+||++|+|||+.|+|||||+|..++ .|+|++|+||+++++
T Consensus 1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~d 78 (96)
T COG0234 1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKID 78 (96)
T ss_pred CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEEC
Confidence 57999999999999999999999999999999999999999999987654 489999999999986
No 9
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=99.88 E-value=7.4e-23 Score=160.14 Aligned_cols=71 Identities=25% Similarity=0.401 Sum_probs=65.1
Q ss_pred eecCccCceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccC--------CceeecCCCCcEEEec
Q 027479 151 LETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFG--------GPILFAAFPNTCITNN 221 (223)
Q Consensus 151 i~~d~~~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~--------~~V~~~~~~Gt~i~~~ 221 (223)
+....+++|+||+||||||+.++|++|+|||+||+++++||++|+|+|||+|..+ ++|+|++|+||+|+++
T Consensus 4 ~~~~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~y~Gtevk~d 82 (100)
T PTZ00414 4 FTVPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKDWTPTVKVGDTVLLPEFGGSSVKVE 82 (100)
T ss_pred ccccccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCccccceecCCCEEEEcCCCCcEEEEC
Confidence 4456788999999999999999999999999999999999999999999999653 4799999999999986
No 10
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=99.85 E-value=2e-21 Score=149.65 Aligned_cols=65 Identities=31% Similarity=0.512 Sum_probs=60.3
Q ss_pred CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCcc--------CCceeecCCCCcEEEec
Q 027479 157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKF--------GGPILFAAFPNTCITNN 221 (223)
Q Consensus 157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~--------~~~V~~~~~~Gt~i~~~ 221 (223)
++|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||||.. ++.|+|++|+|++|+++
T Consensus 1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~~~~~~Vk~GD~Vl~~~y~g~ev~~~ 73 (91)
T PRK14533 1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDDEEDFDIKVGDKVIFSKYAGTEIKID 73 (91)
T ss_pred CCceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCCccccccccCCCEEEEccCCCeEEEEC
Confidence 479999999999999999999999999999999999999999999863 24699999999999986
No 11
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1e-21 Score=153.61 Aligned_cols=72 Identities=35% Similarity=0.386 Sum_probs=66.9
Q ss_pred eeecCccCceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccCC-------------ceeecCCCCc
Q 027479 150 ILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGG-------------PILFAAFPNT 216 (223)
Q Consensus 150 ii~~d~~~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~~-------------~V~~~~~~Gt 216 (223)
+...+++++++|++|||||++++++++|+|||+||+.+++|+++|+|+|||||.+++ +||||+|+||
T Consensus 2 ~~~~~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt 81 (104)
T KOG1641|consen 2 ISTSWEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGT 81 (104)
T ss_pred cchhhhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCc
Confidence 445678999999999999999999999999999999999999999999999999875 5999999999
Q ss_pred EEEec
Q 027479 217 CITNN 221 (223)
Q Consensus 217 ~i~~~ 221 (223)
+|++.
T Consensus 82 ~V~l~ 86 (104)
T KOG1641|consen 82 KVKLG 86 (104)
T ss_pred EEecc
Confidence 99874
No 12
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=99.84 E-value=4.3e-21 Score=148.39 Aligned_cols=65 Identities=40% Similarity=0.597 Sum_probs=60.5
Q ss_pred CceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccC-------------CceeecCCCCcEEEec
Q 027479 157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFG-------------GPILFAAFPNTCITNN 221 (223)
Q Consensus 157 ~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~-------------~~V~~~~~~Gt~i~~~ 221 (223)
++|+||+|||||++.++|++|+|||+||+++++|+++|+|+|||||.++ +.|+|++|+|++|+++
T Consensus 1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~ 78 (95)
T PRK00364 1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKID 78 (95)
T ss_pred CcceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEEC
Confidence 4699999999999999999999999999999999999999999999763 3599999999999986
No 13
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=99.81 E-value=3e-20 Score=143.08 Aligned_cols=64 Identities=39% Similarity=0.630 Sum_probs=59.5
Q ss_pred ceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccC-------------CceeecCCCCcEEEec
Q 027479 158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFG-------------GPILFAAFPNTCITNN 221 (223)
Q Consensus 158 ~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~-------------~~V~~~~~~Gt~i~~~ 221 (223)
+|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||||..+ +.|+|++|+|++|+++
T Consensus 1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~ 77 (93)
T cd00320 1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLD 77 (93)
T ss_pred CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEEC
Confidence 489999999999999999999999999999999999999999999642 3699999999999986
No 14
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=99.76 E-value=1.1e-18 Score=133.90 Aligned_cols=64 Identities=41% Similarity=0.664 Sum_probs=57.3
Q ss_pred ceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCccCC-------------ceeecCCCCcEEEec
Q 027479 158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCKFGG-------------PILFAAFPNTCITNN 221 (223)
Q Consensus 158 ~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~~~~-------------~V~~~~~~Gt~i~~~ 221 (223)
+|+||+|||||++.+++++|+|||+||+++++++++|+|||||+|.+++ .|+|++|+|++|++|
T Consensus 1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~ 77 (93)
T PF00166_consen 1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFD 77 (93)
T ss_dssp EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEET
T ss_pred CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEEC
Confidence 5899999999999999999999999999999999999999999987542 599999999999985
No 15
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=81.42 E-value=1.2 Score=38.18 Aligned_cols=52 Identities=21% Similarity=0.478 Sum_probs=36.7
Q ss_pred ecccCCcEEEecCCC-ce--EE---EEcC--eeeEEE--eccceeeeeecCcc--CceeecCCe
Q 027479 114 ISVKPGTQVIYSKYA-GT--EL---EFNG--ANHLIL--REDDVVGILETDEI--KDLKPLNDR 165 (223)
Q Consensus 114 ~~VkvGD~Vlf~ky~-G~--eV---~~dg--~~y~il--re~DIlaii~~d~~--~~l~PL~DR 165 (223)
+..|+||+|+|+-++ |+ .+ +++| .+|+++ .++|....+..+.+ -.|+|+-|+
T Consensus 3 ~~Fk~Gd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v~VP~~ka~~~GiR~v~~~ 66 (166)
T COG1329 3 MAFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTVMVPVAKADSVGLRPVVDQ 66 (166)
T ss_pred ccccCCCEEEecCCCceeeehhhhHhhcCceeEEEEEEEcCCCcEEEeeccchhhcCChhhhhh
Confidence 567999999999998 42 12 2444 577776 57888888876544 368888776
No 16
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=78.49 E-value=1.6 Score=40.60 Aligned_cols=42 Identities=36% Similarity=0.434 Sum_probs=29.3
Q ss_pred ccccceEE-ecCCC--CCCCcceEEEEecCceecCCCeeeecccCCcEEEecC
Q 027479 77 EKTDGGIF-LPSAA--QTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK 126 (223)
Q Consensus 77 ~kT~gGIi-LP~sa--~~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k 126 (223)
..-.-||| +|+-- -.+.-.|+|+|||+|.. +-|+||+|.|-.
T Consensus 52 ~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvt--------drkvGDrVayl~ 96 (336)
T KOG1197|consen 52 LYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT--------DRKVGDRVAYLN 96 (336)
T ss_pred HHHhccccCCCCCCcCCCcccceEEEEecCCcc--------ccccccEEEEec
Confidence 34456888 33211 12446899999999974 469999999965
No 17
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=78.14 E-value=2 Score=32.53 Aligned_cols=26 Identities=46% Similarity=0.585 Sum_probs=20.4
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEecCC
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKY 127 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky 127 (223)
..|+|+++|++.. .+++||+|....+
T Consensus 39 ~~G~V~~vG~~v~--------~~~~Gd~V~~~~~ 64 (109)
T PF08240_consen 39 GVGVVVAVGPGVT--------DFKVGDRVVVSPN 64 (109)
T ss_dssp EEEEEEEESTTTT--------SSGTT-EEEEESE
T ss_pred eeeeeeeeccccc--------cccccceeeeecc
Confidence 4799999999863 4899999998553
No 18
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.27 E-value=3.3 Score=39.55 Aligned_cols=110 Identities=28% Similarity=0.327 Sum_probs=64.3
Q ss_pred ccCCeEEEEeccc-----cccccceEEecCCCC---CCCcceEEEEecCceecCCCeeeecccCCcEEEecCC--Cc---
Q 027479 63 PLGDRVLVKIKTV-----EEKTDGGIFLPSAAQ---TKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKY--AG--- 129 (223)
Q Consensus 63 PLgDRVLVk~~e~-----e~kT~gGIiLP~sa~---~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky--~G--- 129 (223)
|=-|-||||.... ..-+.+|.+ |+.-- .-.-.|.|.+||+|. .+||+||+|+..=- =|
T Consensus 25 P~~gEVlVri~AtGVCHTD~~~~~G~~-p~~~P~vLGHEgAGiVe~VG~gV--------t~vkpGDhVI~~f~p~CG~C~ 95 (366)
T COG1062 25 PRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVLGHEGAGIVEAVGEGV--------TSVKPGDHVILLFTPECGQCK 95 (366)
T ss_pred CCCCeEEEEEEEeeccccchhhhcCCC-CCCCceecccccccEEEEecCCc--------cccCCCCEEEEcccCCCCCCc
Confidence 7789999998642 223333331 22210 012479999999998 48999999985321 01
Q ss_pred ---------------eE---EEEcCeeeEEEeccceeeeeecCccCceeecCCeEEEEEeccccccccee
Q 027479 130 ---------------TE---LEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGL 181 (223)
Q Consensus 130 ---------------~e---V~~dg~~y~ilre~DIlaii~~d~~~~l~PL~DRVLVk~~~~e~~T~gGi 181 (223)
+. .-.||..-+.....++...+-...+...--++++-++|......-...++
T Consensus 96 ~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~l 165 (366)
T COG1062 96 FCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACL 165 (366)
T ss_pred hhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCCccceEE
Confidence 11 22356555557777777777654555555666666776665444334443
No 19
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=66.19 E-value=13 Score=35.28 Aligned_cols=23 Identities=48% Similarity=0.609 Sum_probs=20.2
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|++||++.. .+|+||+|-.
T Consensus 65 ivG~V~~vG~~V~--------~~k~GDrVgV 87 (339)
T COG1064 65 IVGTVVEVGEGVT--------GLKVGDRVGV 87 (339)
T ss_pred eEEEEEEecCCCc--------cCCCCCEEEe
Confidence 5899999999973 5899999988
No 20
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=65.47 E-value=6 Score=34.52 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=21.0
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEecC
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK 126 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k 126 (223)
..|+|+++|++....+ ....+|+||+|....
T Consensus 6 ~~G~V~~vG~~v~~~~--~~~~~~~GdrV~~~~ 36 (280)
T TIGR03366 6 IVGEVVALRGGFTPAD--DGVPLRLGQRVVWSV 36 (280)
T ss_pred cceEEEEeCCCccccc--cCCCCCCCCEEEEcC
Confidence 4799999999863110 001489999998743
No 21
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=62.57 E-value=20 Score=34.32 Aligned_cols=102 Identities=24% Similarity=0.370 Sum_probs=58.9
Q ss_pred cccCCeEEEEeccc-----cccccceEEecCCCCC----CCcceEEEEecCceecCCCeeeecccCCcEEE---------
Q 027479 62 KPLGDRVLVKIKTV-----EEKTDGGIFLPSAAQT----KPQAGEVVAVGEGKTVGKAKLDISVKPGTQVI--------- 123 (223)
Q Consensus 62 kPLgDRVLVk~~e~-----e~kT~gGIiLP~sa~~----K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl--------- 123 (223)
.|-...|.||..-. +..+-+|-. |+..-. -.-.|.|.+||+|. ..+|+||+|+
T Consensus 29 pPka~EVRIKI~~t~vCHTD~~~~~g~~-~~~~fP~IlGHEaaGIVESvGegV--------~~vk~GD~Viplf~p~Cge 99 (375)
T KOG0022|consen 29 PPKAHEVRIKILATGVCHTDAYVWSGKD-PEGLFPVILGHEAAGIVESVGEGV--------TTVKPGDHVIPLFTPQCGE 99 (375)
T ss_pred CCCCceEEEEEEEEeeccccceeecCCC-ccccCceEecccceeEEEEecCCc--------cccCCCCEEeeccccCCCC
Confidence 36677777776532 223333332 332211 12479999999997 3799999998
Q ss_pred --------------ecCCCceEE-EEcCeeeEEEeccceeeeeecCccCceeecCCeEEEEEec
Q 027479 124 --------------YSKYAGTEL-EFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAE 172 (223)
Q Consensus 124 --------------f~ky~G~eV-~~dg~~y~ilre~DIlaii~~d~~~~l~PL~DRVLVk~~~ 172 (223)
|..+.+... -+||+.-+..+.++|+--+-+.-+...--+.|--|+|...
T Consensus 100 Ck~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~ 163 (375)
T KOG0022|consen 100 CKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDP 163 (375)
T ss_pred cccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCC
Confidence 222223233 3477777778888888776544443344444444444433
No 22
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=62.24 E-value=10 Score=28.56 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=11.0
Q ss_pred ccCCcEEEecCCCc
Q 027479 116 VKPGTQVIYSKYAG 129 (223)
Q Consensus 116 VkvGD~Vlf~ky~G 129 (223)
.++||.|+|+.++-
T Consensus 2 f~~GD~VVh~~~Gv 15 (98)
T PF02559_consen 2 FKIGDYVVHPNHGV 15 (98)
T ss_dssp --TTSEEEETTTEE
T ss_pred CCCCCEEEECCCce
Confidence 58999999999983
No 23
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=59.67 E-value=12 Score=34.29 Aligned_cols=94 Identities=32% Similarity=0.403 Sum_probs=55.4
Q ss_pred ccCCeEEEEeccc-----cccccceEEecCCC----CCCCcceEEEEecCceecCCCeeeecccCCcEEEecC-C--Cce
Q 027479 63 PLGDRVLVKIKTV-----EEKTDGGIFLPSAA----QTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK-Y--AGT 130 (223)
Q Consensus 63 PLgDRVLVk~~e~-----e~kT~gGIiLP~sa----~~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k-y--~G~ 130 (223)
|-.+.||||.... +.....|-.-|... -..-..|+|++||++.. ..++||+|.+.. . .|.
T Consensus 25 p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~--------~~~~GdrV~~~~~~~~~G~ 96 (326)
T COG0604 25 PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVT--------GFKVGDRVAALGGVGRDGG 96 (326)
T ss_pred CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCC--------CcCCCCEEEEccCCCCCCc
Confidence 6678899988653 23333443111111 11235899999999863 239999999984 2 231
Q ss_pred EEEEcCeeeEEEeccceeeeeec----Cc-----------------cCceeecCCeEEEEEe
Q 027479 131 ELEFNGANHLILREDDVVGILET----DE-----------------IKDLKPLNDRVFIKVA 171 (223)
Q Consensus 131 eV~~dg~~y~ilre~DIlaii~~----d~-----------------~~~l~PL~DRVLVk~~ 171 (223)
-.+|..+.++.++- +-. ++ ...++| +|+|||--.
T Consensus 97 -----~AEy~~v~a~~~~~-~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~-g~~VLV~ga 151 (326)
T COG0604 97 -----YAEYVVVPADWLVP-LPDGLSFEEAAALPLAGLTAWLALFDRAGLKP-GETVLVHGA 151 (326)
T ss_pred -----ceeEEEecHHHcee-CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCC-CCEEEEecC
Confidence 25677776644433 211 11 234777 899998653
No 24
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=59.39 E-value=10 Score=33.63 Aligned_cols=46 Identities=22% Similarity=0.421 Sum_probs=27.9
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEecCCCc-eEE-EEcC--eeeEEEecccee
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAG-TEL-EFNG--ANHLILREDDVV 148 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky~G-~eV-~~dg--~~y~ilre~DIl 148 (223)
..|+|+++|++. .+++||+|+...... ... -.+| .+|+++.++.++
T Consensus 66 ~~G~V~~vG~~v---------~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~ 115 (308)
T TIGR01202 66 SVGRVVEAGPDT---------GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVC 115 (308)
T ss_pred eEEEEEEecCCC---------CCCCCCEEEEeCccccccccccCCcccceEEcCHHHce
Confidence 489999999873 269999999642100 000 0012 477777766543
No 25
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=57.24 E-value=28 Score=30.82 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=26.9
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEecCCC-------ceEEEEcCeeeEEE
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYA-------GTELEFNGANHLIL 142 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky~-------G~eV~~dg~~y~il 142 (223)
..|.||.+=.+.+ -++.++.||+|+|..++ |-.++.|-+.|-+.
T Consensus 79 Shgviv~~~~~sy-----R~~GL~aGeT~iY~~eG~~i~Lteg~~Ie~~ck~~~v~ 129 (203)
T COG4384 79 SHGVIVVSQHGSY-----RITGLKAGETVIYNHEGAKIVLTEGGIIEADCKTLTVN 129 (203)
T ss_pred ceeEEEEecCCcc-----ccccccCCceEEEeccCcEEEEccCcEEEEeccEEEEe
Confidence 3455554444432 46789999999999876 33344455555533
No 26
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=53.15 E-value=23 Score=33.66 Aligned_cols=72 Identities=33% Similarity=0.411 Sum_probs=41.3
Q ss_pred cccCCeEEEEecccccc-----ccceEEe--cC--CCCCCCcceEEEEecCceecCCCeeeecccCCcEEEecCCC-ceE
Q 027479 62 KPLGDRVLVKIKTVEEK-----TDGGIFL--PS--AAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYA-GTE 131 (223)
Q Consensus 62 kPLgDRVLVk~~e~e~k-----T~gGIiL--P~--sa~~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky~-G~e 131 (223)
.|..| ||||-..+.-- .--|.|= |+ ..-.....|+||+||.+. ..+|+||+|+-..-+ |+.
T Consensus 45 ~~~s~-v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~v--------kgfk~Gd~VIp~~a~lGtW 115 (354)
T KOG0025|consen 45 VPGSD-VLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNV--------KGFKPGDWVIPLSANLGTW 115 (354)
T ss_pred CCCCc-eeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCc--------CccCCCCeEeecCCCCccc
Confidence 36677 99988765421 1234431 11 111223579999999965 248999999976533 643
Q ss_pred ---EEEcCeeeEEE
Q 027479 132 ---LEFNGANHLIL 142 (223)
Q Consensus 132 ---V~~dg~~y~il 142 (223)
..+++.+.+-+
T Consensus 116 ~t~~v~~e~~Li~v 129 (354)
T KOG0025|consen 116 RTEAVFSESDLIKV 129 (354)
T ss_pred eeeEeecccceEEc
Confidence 33444444333
No 27
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=52.93 E-value=56 Score=27.81 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=27.7
Q ss_pred eEEecCCCCCCCcceEEEEecCceecCCCeeeecccCCcEEEecCCC
Q 027479 82 GIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYA 128 (223)
Q Consensus 82 GIiLP~sa~~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky~ 128 (223)
+|+||-. .+...|.||++..+++- +..++.|+.++|..++
T Consensus 48 ~vvl~lG--G~rs~~Vvia~~d~~yR-----~~~L~~GEvalY~~~G 87 (162)
T PF06890_consen 48 AVVLFLG--GDRSHGVVIAVEDRRYR-----PKGLKPGEVALYDDEG 87 (162)
T ss_pred EEEEEec--cCCcceEEEEeCCcccc-----ccCCCCCcEEEEcCCC
Confidence 4555543 34568888888876642 3458999999999764
No 28
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=49.13 E-value=16 Score=34.16 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=20.2
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|...
T Consensus 69 ~~G~V~~vG~~V~--------~~~vGdrV~~~ 92 (393)
T TIGR02819 69 ITGEVIEKGRDVE--------FIKIGDIVSVP 92 (393)
T ss_pred eEEEEEEEcCccc--------cccCCCEEEEe
Confidence 5899999999862 58999999874
No 29
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=47.67 E-value=34 Score=30.86 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=18.1
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEecC
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK 126 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k 126 (223)
..|+|+++|.+ .+++||+|.+..
T Consensus 66 ~~G~V~~~g~~----------~~~vGdrV~~~~ 88 (341)
T cd08237 66 GIGVVVSDPTG----------TYKVGTKVVMVP 88 (341)
T ss_pred eEEEEEeeCCC----------ccCCCCEEEECC
Confidence 57999998764 369999998753
No 30
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=44.95 E-value=32 Score=30.92 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.7
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|+..
T Consensus 64 ~~G~V~~vG~~v~--------~~~~Gd~V~~~ 87 (329)
T TIGR02822 64 VVGEVAGRGADAG--------GFAVGDRVGIA 87 (329)
T ss_pred eEEEEEEECCCCc--------ccCCCCEEEEc
Confidence 5899999999852 47999999853
No 31
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=44.86 E-value=19 Score=32.41 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=19.0
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++ . .+++||+|+..
T Consensus 65 ~~G~V~~vG~~-~--------~~~vGdrV~~~ 87 (355)
T cd08230 65 ALGVVEEVGDG-S--------GLSPGDLVVPT 87 (355)
T ss_pred cceEEEEecCC-C--------CCCCCCEEEec
Confidence 47999999987 3 37999999864
No 32
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]
Probab=44.32 E-value=67 Score=28.24 Aligned_cols=70 Identities=26% Similarity=0.398 Sum_probs=45.9
Q ss_pred ccCCcEEEecCCCceEEEEcCeeeEEEeccceeeeeec--CccCceeecCCeEEEEEecccccccceeEeecCccCCCce
Q 027479 116 VKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILET--DEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSI 193 (223)
Q Consensus 116 VkvGD~Vlf~ky~G~eV~~dg~~y~ilre~DIlaii~~--d~~~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~ 193 (223)
+.+||+.+=+.|.| +++-+|+=+.-.+ +-++.++| +|-||-++++.+.+ +-.+|+..-.| -
T Consensus 89 ~~V~d~~lk~~Frg-----------lirkqdvR~tEkdrv~v~ksFrP-gDiVlAkVis~~~~--~~y~LTtAene---L 151 (193)
T KOG3409|consen 89 LSVGDKPLKKSFRG-----------LIRKQDVRATEKDRVKVYKSFRP-GDIVLAKVISLGDG--SNYLLTTAENE---L 151 (193)
T ss_pred EEEcCEEhhhhhcc-----------eeehhhccccccchhhhhhccCC-CcEEEEEEeecCCC--CcEEEEEeccc---c
Confidence 45566665555655 5677777554332 23578885 99999999996554 34566554333 7
Q ss_pred eEEEEeeCC
Q 027479 194 GMVRVVNFC 202 (223)
Q Consensus 194 G~VVAVG~G 202 (223)
|.|+|-+.+
T Consensus 152 GVV~a~as~ 160 (193)
T KOG3409|consen 152 GVVFARASE 160 (193)
T ss_pred eEEEEeccc
Confidence 999999863
No 33
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=42.20 E-value=54 Score=26.57 Aligned_cols=66 Identities=14% Similarity=0.332 Sum_probs=38.4
Q ss_pred ccccceEEecCCCC-----CCCcceEEEEecCceecCCCeeeecccCCcEEEecC-CCceEEEEcC-eeeEEEe
Q 027479 77 EKTDGGIFLPSAAQ-----TKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK-YAGTELEFNG-ANHLILR 143 (223)
Q Consensus 77 ~kT~gGIiLP~sa~-----~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k-y~G~eV~~dg-~~y~ilr 143 (223)
.+...||.--+--+ .....+.+++ |......++..+..+++||.++|+. |.|+--..+. .|+++++
T Consensus 43 g~~~~GiWe~TpG~~r~~y~~~E~chil~-G~v~~T~d~Ge~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~~ 115 (116)
T COG3450 43 GQVETGIWECTPGKFRVTYDEDEFCHILE-GRVEVTPDGGEPVEVRAGDSFVFPAGFKGTWEVLETVRKHYVIR 115 (116)
T ss_pred CCeeEeEEEecCccceEEcccceEEEEEe-eEEEEECCCCeEEEEcCCCEEEECCCCeEEEEEeeeeEEEEEEe
Confidence 45556776533211 1122344443 4444455556788999999999997 8886544443 4455443
No 34
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=41.10 E-value=56 Score=29.60 Aligned_cols=24 Identities=46% Similarity=0.679 Sum_probs=19.1
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|+..
T Consensus 61 ~~G~V~~vG~~v~--------~~~~Gd~Vv~~ 84 (365)
T cd05279 61 GAGIVESIGPGVT--------TLKPGDKVIPL 84 (365)
T ss_pred eeEEEEEeCCCcc--------cCCCCCEEEEc
Confidence 5799999998642 47899999864
No 35
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=38.55 E-value=28 Score=31.78 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.0
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++.. .+++||+|+.
T Consensus 74 ~~G~V~~vG~~v~--------~~~vGdrV~~ 96 (360)
T PLN02586 74 IVGIVTKLGKNVK--------KFKEGDRVGV 96 (360)
T ss_pred eeEEEEEECCCCC--------ccCCCCEEEE
Confidence 5799999999752 4799999984
No 36
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=37.87 E-value=29 Score=31.58 Aligned_cols=23 Identities=48% Similarity=0.735 Sum_probs=19.1
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++.. .+++||+|+.
T Consensus 69 ~~G~V~~vG~~v~--------~~~~GdrV~~ 91 (371)
T cd08281 69 AAGVVVEVGEGVT--------DLEVGDHVVL 91 (371)
T ss_pred ceeEEEEeCCCCC--------cCCCCCEEEE
Confidence 4799999998752 4799999986
No 37
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=37.53 E-value=62 Score=24.43 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=19.4
Q ss_pred ecccCCcEEEecC-CCceEEEEcCeeeEEE
Q 027479 114 ISVKPGTQVIYSK-YAGTELEFNGANHLIL 142 (223)
Q Consensus 114 ~~VkvGD~Vlf~k-y~G~eV~~dg~~y~il 142 (223)
-++++||+|+... .-|+=+++|++ ++.+
T Consensus 36 ~~L~~Gd~VvT~gGi~G~V~~i~d~-~v~v 64 (84)
T TIGR00739 36 ESLKKGDKVLTIGGIIGTVTKIAEN-TIVI 64 (84)
T ss_pred HhCCCCCEEEECCCeEEEEEEEeCC-EEEE
Confidence 4789999999865 55776777654 3344
No 38
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=36.28 E-value=63 Score=27.67 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=20.6
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEecCCC
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYA 128 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky~ 128 (223)
..|.|+++|++.. ..++||+|+.-.++
T Consensus 59 ~~G~V~~vG~~v~--------~~~~Gd~V~~~~~g 85 (312)
T cd08269 59 GWGRVVALGPGVR--------GLAVGDRVAGLSGG 85 (312)
T ss_pred eEEEEEEECCCCc--------CCCCCCEEEEecCC
Confidence 4799999998752 46899999975433
No 39
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=35.79 E-value=31 Score=30.78 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=19.9
Q ss_pred CcceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~--------~~~vGd~V~~~ 84 (347)
T PRK10309 60 EFSGYVEAVGSGVD--------DLHPGDAVACV 84 (347)
T ss_pred ceEEEEEEeCCCCC--------CCCCCCEEEEC
Confidence 35799999998752 47999999864
No 40
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=35.07 E-value=1.5e+02 Score=22.80 Aligned_cols=46 Identities=17% Similarity=0.321 Sum_probs=32.8
Q ss_pred eEEEEcCeeeEEEeccceeeeeecCccCceeecCCeEEEEEecccccccceeEeecCccCCCceeEEEEeeCCc
Q 027479 130 TELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVRVVNFCK 203 (223)
Q Consensus 130 ~eV~~dg~~y~ilre~DIlaii~~d~~~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~~~G~VVAVG~G~ 203 (223)
.-|.++|++|+++|.+ |+.+.-+ +..+|+++-.+ ...-||++....
T Consensus 59 ~gi~l~G~kY~~~~~d------------------~~~i~~k-----~~~~G~~i~kt-----~~~ivIg~y~~~ 104 (121)
T PF00235_consen 59 NGITLGGKKYIVLRAD------------------DNSIYGK-----KGKGGIIIVKT-----KQAIVIGMYDES 104 (121)
T ss_dssp H-EEETTEEEEEEEEE------------------TTEEEEE-----ETTEEEEEEEC-----SSEEEEEEEETT
T ss_pred CCeEEcCcEeEEEecC------------------CceEEee-----CCCCcEEEEEC-----CCEEEEEEeCCC
Confidence 4599999999999955 4444422 45788888655 368888888764
No 41
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=34.43 E-value=44 Score=22.45 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=17.3
Q ss_pred cceEEecCCCCCC--CcceEEEEecCc
Q 027479 80 DGGIFLPSAAQTK--PQAGEVVAVGEG 104 (223)
Q Consensus 80 ~gGIiLP~sa~~K--~~~G~VVAVG~G 104 (223)
.|||+.|+...-. +-...|+.+||-
T Consensus 2 ~SGii~~dG~~~q~~~~~a~ivl~GpS 28 (40)
T PF08140_consen 2 PSGIITPDGTNVQFPHGVANIVLIGPS 28 (40)
T ss_pred CCceECCCCCEEECCcccceEEEECCc
Confidence 4899999976432 222379999984
No 42
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=34.16 E-value=35 Score=31.51 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=19.0
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++.. .+++||+|..
T Consensus 68 ~aG~Vv~vG~~v~--------~~~vGdrV~~ 90 (375)
T PLN02178 68 IVGIATKVGKNVT--------KFKEGDRVGV 90 (375)
T ss_pred eeEEEEEECCCCC--------ccCCCCEEEE
Confidence 4799999998752 4799999985
No 43
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=33.78 E-value=1e+02 Score=22.45 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=40.2
Q ss_pred ecCCCC--CCCcceEEEEecCceecCCCeeeecccCCcEEEecCCCceEEEEcCeeeEEE
Q 027479 85 LPSAAQ--TKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIL 142 (223)
Q Consensus 85 LP~sa~--~K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky~G~eV~~dg~~y~il 142 (223)
+|..|- .....|+.+-||-+... +..+|-.|.+.....|=.|.|.|+.++ +|-+|
T Consensus 12 vP~~AV~~G~~~~G~~lYvgR~~~~-g~~~pGKv~p~~~~~yi~~~g~E~~~~--~YEVL 68 (71)
T smart00696 12 IPPNAVVGGTDSDGEPLYVGRAYYE-GSLLPGKVVPSHGCAYIPYGGQEVRLD--SYEVL 68 (71)
T ss_pred CCCCcEEcccCCCCCEEEEEEEEEC-CcEEEEEEEccCCEEEEEECCEEEEcC--eEEEE
Confidence 477663 24457899999987753 335777788899999999999999874 44443
No 44
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=33.69 E-value=37 Score=29.97 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=19.4
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++. ..+++||+|++-
T Consensus 76 ~~G~V~~vG~~v--------~~~~~Gd~V~~~ 99 (345)
T cd08293 76 GGGVGVVEESKH--------QKFAVGDIVTSF 99 (345)
T ss_pred eeEEEEEeccCC--------CCCCCCCEEEec
Confidence 569999999875 247999999863
No 45
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=33.65 E-value=36 Score=31.63 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=19.7
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. ..+++||+|+..
T Consensus 70 ~~G~V~~vG~~v~-------~~~~vGdrV~~~ 94 (410)
T cd08238 70 FAGTILKVGKKWQ-------GKYKPGQRFVIQ 94 (410)
T ss_pred cEEEEEEeCCCcc-------CCCCCCCEEEEc
Confidence 4799999998752 137999999875
No 46
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=32.97 E-value=38 Score=26.11 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=17.6
Q ss_pred eecccCCcEEEecCCCceEEEEcCeeeEEE
Q 027479 113 DISVKPGTQVIYSKYAGTELEFNGANHLIL 142 (223)
Q Consensus 113 p~~VkvGD~Vlf~ky~G~eV~~dg~~y~il 142 (223)
...+|+||+|+.-... +|+.|+++
T Consensus 74 ~~~Lk~GD~V~ll~~~------~gQ~yiVl 97 (100)
T PF10844_consen 74 TDGLKVGDKVLLLRVQ------GGQKYIVL 97 (100)
T ss_pred ecCCcCCCEEEEEEec------CCCEEEEE
Confidence 4578999999986622 46777776
No 47
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=32.75 E-value=36 Score=30.79 Aligned_cols=24 Identities=50% Similarity=0.732 Sum_probs=19.6
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|+..
T Consensus 64 ~~G~V~~vG~~v~--------~~~~GdrV~~~ 87 (369)
T cd08301 64 AAGIVESVGEGVT--------DLKPGDHVLPV 87 (369)
T ss_pred cceEEEEeCCCCC--------ccccCCEEEEc
Confidence 4799999998752 47999999863
No 48
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=32.66 E-value=70 Score=27.64 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=20.5
Q ss_pred CcceEEEEecCceecCCCeeeecccCCcEEEecC
Q 027479 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK 126 (223)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k 126 (223)
...|+|+++|++.. ..++||+|+...
T Consensus 65 e~~G~V~~~G~~v~--------~~~~Gd~V~~~~ 90 (324)
T cd08292 65 EAVGVVDAVGEGVK--------GLQVGQRVAVAP 90 (324)
T ss_pred ceEEEEEEeCCCCC--------CCCCCCEEEecc
Confidence 35799999998752 478999999754
No 49
>PLN02827 Alcohol dehydrogenase-like
Probab=31.96 E-value=38 Score=31.19 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=19.9
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|+..
T Consensus 71 ~~G~V~~vG~~v~--------~~~~GdrV~~~ 94 (378)
T PLN02827 71 ASGIVESIGEGVT--------EFEKGDHVLTV 94 (378)
T ss_pred ceEEEEEcCCCCc--------ccCCCCEEEEe
Confidence 5799999999862 47999999874
No 50
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=31.46 E-value=42 Score=30.44 Aligned_cols=24 Identities=63% Similarity=0.768 Sum_probs=19.6
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|+..
T Consensus 64 ~~G~V~~vG~~v~--------~~~vGdrV~~~ 87 (368)
T cd08300 64 GAGIVESVGEGVT--------SVKPGDHVIPL 87 (368)
T ss_pred eeEEEEEeCCCCc--------cCCCCCEEEEc
Confidence 5799999998752 47999999864
No 51
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=30.97 E-value=45 Score=29.51 Aligned_cols=24 Identities=46% Similarity=0.623 Sum_probs=19.6
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|+..
T Consensus 62 ~~G~V~~vG~~v~--------~~~~Gd~V~~~ 85 (339)
T cd08239 62 PAGVVVAVGPGVT--------HFRVGDRVMVY 85 (339)
T ss_pred ceEEEEEECCCCc--------cCCCCCEEEEC
Confidence 5799999998752 47999999864
No 52
>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A. Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C
Probab=30.23 E-value=16 Score=28.60 Aligned_cols=35 Identities=20% Similarity=0.212 Sum_probs=23.1
Q ss_pred ecccCCcEEEecCCCce-EEEEcCeeeEEEeccceeeeeecCccCce
Q 027479 114 ISVKPGTQVIYSKYAGT-ELEFNGANHLILREDDVVGILETDEIKDL 159 (223)
Q Consensus 114 ~~VkvGD~Vlf~ky~G~-eV~~dg~~y~ilre~DIlaii~~d~~~~l 159 (223)
+-++.||.|+.+.|.-+ +.+ .||+=++..|+++.|
T Consensus 56 iwI~~GD~VlVsp~d~~~~~k-----------g~Iv~r~~~~qv~~L 91 (99)
T TIGR00523 56 IWIREGDVVIVKPWEFQGDDK-----------CDIVWRYTKTQVEWL 91 (99)
T ss_pred EEecCCCEEEEEEccCCCCcc-----------EEEEEEcCHHHHHHH
Confidence 56899999999877644 322 555556666655544
No 53
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=29.89 E-value=47 Score=30.25 Aligned_cols=24 Identities=63% Similarity=0.656 Sum_probs=19.7
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|...
T Consensus 63 ~~G~V~~vG~~v~--------~~~~GdrV~~~ 86 (368)
T TIGR02818 63 GAGIVEAVGEGVT--------SVKVGDHVIPL 86 (368)
T ss_pred cEEEEEEECCCCc--------cCCCCCEEEEc
Confidence 5799999998752 47999999864
No 54
>PRK10083 putative oxidoreductase; Provisional
Probab=29.84 E-value=52 Score=28.93 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=19.2
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++. ..+++||+|+..
T Consensus 61 ~~G~V~~vG~~v--------~~~~~Gd~V~~~ 84 (339)
T PRK10083 61 FFGVIDAVGEGV--------DAARIGERVAVD 84 (339)
T ss_pred eEEEEEEECCCC--------ccCCCCCEEEEc
Confidence 479999999875 247999999853
No 55
>PLN02740 Alcohol dehydrogenase-like
Probab=29.78 E-value=43 Score=30.67 Aligned_cols=24 Identities=46% Similarity=0.601 Sum_probs=19.5
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|+..
T Consensus 73 ~~G~V~~vG~~v~--------~~~vGdrV~~~ 96 (381)
T PLN02740 73 AAGIVESVGEGVE--------DLKAGDHVIPI 96 (381)
T ss_pred ceEEEEEeCCCCC--------cCCCCCEEEec
Confidence 4799999998752 47999999864
No 56
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=29.12 E-value=50 Score=28.84 Aligned_cols=24 Identities=50% Similarity=0.740 Sum_probs=19.5
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++. ...++||+|+..
T Consensus 66 ~~G~V~~vG~~v--------~~~~~Gd~V~~~ 89 (336)
T TIGR02817 66 AAGVVVAVGDEV--------TLFKPGDEVWYA 89 (336)
T ss_pred eEEEEEEeCCCC--------CCCCCCCEEEEc
Confidence 579999999874 247899999964
No 57
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=28.95 E-value=49 Score=29.81 Aligned_cols=23 Identities=57% Similarity=0.787 Sum_probs=19.1
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++.. .+++||+|..
T Consensus 62 ~~G~V~~vG~~v~--------~~~~GdrV~~ 84 (358)
T TIGR03451 62 AAGVVEAVGEGVT--------DVAPGDYVVL 84 (358)
T ss_pred eEEEEEEeCCCCc--------ccCCCCEEEE
Confidence 5799999998752 4799999986
No 58
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=28.62 E-value=51 Score=29.90 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=19.0
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++.. ..++||+|++
T Consensus 71 ~~G~Vv~vG~~v~--------~~~~Gd~V~~ 93 (357)
T PLN02514 71 VVGEVVEVGSDVS--------KFTVGDIVGV 93 (357)
T ss_pred eeEEEEEECCCcc--------cccCCCEEEE
Confidence 5799999999752 4799999985
No 59
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=27.99 E-value=64 Score=28.53 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=19.1
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++. ...++||+|+.
T Consensus 62 ~~G~V~~~G~~~--------~~~~~Gd~V~~ 84 (345)
T cd08260 62 FAGVVVEVGEDV--------SRWRVGDRVTV 84 (345)
T ss_pred eeEEEEEECCCC--------ccCCCCCEEEE
Confidence 579999999875 24799999986
No 60
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=27.78 E-value=1.2e+02 Score=24.45 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=26.9
Q ss_pred ecccCCcEEEecC-CCceEEEEcCe-eeEEEeccceeeeeecCccC
Q 027479 114 ISVKPGTQVIYSK-YAGTELEFNGA-NHLILREDDVVGILETDEIK 157 (223)
Q Consensus 114 ~~VkvGD~Vlf~k-y~G~eV~~dg~-~y~ilre~DIlaii~~d~~~ 157 (223)
-++|+||+|+-.. .-|+=++++++ +++.+.-+++.-.+....|.
T Consensus 35 ~sLk~GD~VvT~GGi~G~V~~I~~~~~~v~le~~gv~i~v~r~AI~ 80 (113)
T PRK06531 35 NAIQKGDEVVTIGGLYGTVDEVDTEAKTIVLDVDGVYLTFELAAIK 80 (113)
T ss_pred HhcCCCCEEEECCCcEEEEEEEecCCCEEEEEECCEEEEEEhhHhh
Confidence 3789999999643 55665666553 56666544555555444443
No 61
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.44 E-value=26 Score=33.46 Aligned_cols=55 Identities=31% Similarity=0.268 Sum_probs=36.7
Q ss_pred cCCeEEEEecc-------ccccccceEEecCCCCC----CCcceEEEEecCceecCCCeeeecccCCcEEEecC
Q 027479 64 LGDRVLVKIKT-------VEEKTDGGIFLPSAAQT----KPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK 126 (223)
Q Consensus 64 LgDRVLVk~~e-------~e~kT~gGIiLP~sa~~----K~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k 126 (223)
--|-|||+... ...-+.|+|..+.-.+. --..|.|..||++. ..+|+||+|....
T Consensus 28 ~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~V--------k~LkVGDrVaiEp 93 (354)
T KOG0024|consen 28 DPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEV--------KHLKVGDRVAIEP 93 (354)
T ss_pred CCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcccc--------cccccCCeEEecC
Confidence 34677877643 24556677766542111 12579999999987 3689999998753
No 62
>PF01957 NfeD: NfeD-like C-terminal, partner-binding; InterPro: IPR002810 The nfe genes (nfeA, nfeB, and nfeD) are involved in the nodulation efficiency and competitiveness of Rhizobium meliloti (Sinorhizobium meliloti) (Rhizobium meliloti) on alfalfa roots []. The specific function of this family is unknown although it is unlikely that NfeD is specifically involved in nodulation as the family contains several different archaeal and bacterial species most of which are not symbionts. This entry describes archaeal and bacterial proteins which are variously described, examples are: nodulation protein, nodulation efficiency protein D (nfeD), hypothetical protein and membrane-bound serine protease (ClpP class). A number of these proteins are classified in MEROPS peptidase family S49 as non-peptidase homologues or as unassigned peptidases. ; PDB: 2K5H_A 3CP0_A 2EXD_A.
Probab=27.39 E-value=2.4e+02 Score=21.74 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=11.2
Q ss_pred EEEEcCeeeEEEeccc
Q 027479 131 ELEFNGANHLILREDD 146 (223)
Q Consensus 131 eV~~dg~~y~ilre~D 146 (223)
+|+++|+.|-...+++
T Consensus 106 ~V~~~G~~w~A~s~~~ 121 (144)
T PF01957_consen 106 RVKVDGERWRARSEDE 121 (144)
T ss_dssp EEEETTEEEEEEESST
T ss_pred EEEECCeEEEEEeCCC
Confidence 4677777777666666
No 63
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=27.05 E-value=52 Score=29.82 Aligned_cols=24 Identities=54% Similarity=0.732 Sum_probs=19.4
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|+..
T Consensus 63 ~~G~V~~vG~~v~--------~~~~GdrV~~~ 86 (365)
T cd08277 63 GAGIVESVGEGVT--------NLKPGDKVIPL 86 (365)
T ss_pred eeEEEEeeCCCCc--------cCCCCCEEEEC
Confidence 5799999998752 47899999863
No 64
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=26.59 E-value=80 Score=27.06 Aligned_cols=24 Identities=54% Similarity=0.750 Sum_probs=19.0
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+.+|++.. .+++||+|+..
T Consensus 65 ~~G~v~~~G~~~~--------~~~~Gd~V~~~ 88 (342)
T cd08266 65 GAGVVEAVGPGVT--------NVKPGQRVVIY 88 (342)
T ss_pred eEEEEEEeCCCCC--------CCCCCCEEEEc
Confidence 4699999997642 46899999865
No 65
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=26.25 E-value=59 Score=28.94 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=18.9
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++.. .+++||+|+.
T Consensus 72 ~~G~V~~vG~~v~--------~~~~Gd~V~~ 94 (351)
T cd08233 72 FSGVVVEVGSGVT--------GFKVGDRVVV 94 (351)
T ss_pred ceEEEEEeCCCCC--------CCCCCCEEEE
Confidence 5799999998752 4799999986
No 66
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=26.13 E-value=62 Score=28.18 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=19.4
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|+..
T Consensus 62 ~~G~v~~vG~~v~--------~~~~Gd~V~~~ 85 (325)
T cd08264 62 FAGVVEEVGDHVK--------GVKKGDRVVVY 85 (325)
T ss_pred eeEEEEEECCCCC--------CCCCCCEEEEC
Confidence 5799999998752 47999999864
No 67
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=25.00 E-value=98 Score=26.25 Aligned_cols=25 Identities=44% Similarity=0.702 Sum_probs=19.6
Q ss_pred CcceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
...|+|+++|++.. ..++||+|+..
T Consensus 27 e~~G~V~~vG~~v~--------~~~~Gd~V~~~ 51 (277)
T cd08255 27 SSVGRVVEVGSGVT--------GFKPGDRVFCF 51 (277)
T ss_pred ceeEEEEEeCCCCC--------CCCCCCEEEec
Confidence 45799999998642 36899999975
No 68
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=24.70 E-value=62 Score=28.55 Aligned_cols=23 Identities=52% Similarity=0.573 Sum_probs=18.7
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++.. ..++||+|+.
T Consensus 61 ~~G~V~~vG~~v~--------~~~~Gd~V~~ 83 (345)
T cd08287 61 FVGVVEEVGSEVT--------SVKPGDFVIA 83 (345)
T ss_pred eEEEEEEeCCCCC--------ccCCCCEEEe
Confidence 5799999998752 4789999985
No 69
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=24.58 E-value=63 Score=28.62 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=19.5
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++. ...++||+|+..
T Consensus 63 ~~G~V~~vG~~v--------~~~~~Gd~V~~~ 86 (340)
T TIGR00692 63 VAGEVVGIGPGV--------EGIKVGDYVSVE 86 (340)
T ss_pred eEEEEEEECCCC--------CcCCCCCEEEEC
Confidence 579999999875 247999999873
No 70
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=23.98 E-value=69 Score=28.19 Aligned_cols=24 Identities=46% Similarity=0.725 Sum_probs=19.3
Q ss_pred CcceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
...|+|+++|++.. ..++||+|+.
T Consensus 60 e~~G~V~~~G~~v~--------~~~~Gd~V~~ 83 (337)
T cd08261 60 ELSGEVVEVGEGVA--------GLKVGDRVVV 83 (337)
T ss_pred ccEEEEEEeCCCCC--------CCCCCCEEEE
Confidence 35799999998742 4789999997
No 71
>cd07376 PLPDE_III_DSD_D-TA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase. This family includes eukaryotic D-serine dehydratases (DSD), cryptic DSDs from bacteria, D-threonine aldolases (D-TA), low specificity D-TAs, and similar uncharacterized proteins. DSD catalyzes the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia. D-TA reversibly catalyzes the aldol cleavage of D-threonine into glycine and acetaldehyde, and the synthesis of D-threonine from glycine and acetaldehyde. Members of this family are fold type III PLP-dependent enzymes, similar to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity to AR, it is poss
Probab=23.81 E-value=1e+02 Score=27.89 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=28.7
Q ss_pred ecccCCcEEEe-cCCCceEEEEcCeeeEEEeccceeeeee
Q 027479 114 ISVKPGTQVIY-SKYAGTELEFNGANHLILREDDVVGILE 152 (223)
Q Consensus 114 ~~VkvGD~Vlf-~ky~G~eV~~dg~~y~ilre~DIlaii~ 152 (223)
..+++||+|.+ +......+.+-+. |++++.+.|...+.
T Consensus 304 ~~~~vGd~v~~ip~H~c~t~~~~~~-~~vv~~~~v~~~w~ 342 (345)
T cd07376 304 DDLPIGDRVFLVPNHACETVALHDE-LYVVEGGRVAATWP 342 (345)
T ss_pred CCCCCCCEEEEeCCccccchhcCCE-EEEEECCEEEEEEe
Confidence 34799999999 6666666666555 88899888887764
No 72
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=23.48 E-value=3.5e+02 Score=22.20 Aligned_cols=59 Identities=24% Similarity=0.407 Sum_probs=30.9
Q ss_pred cCCeEEEEeccccccccceEEecCCCCCCCcceEEEEecCceecCCCee-eecccCCcEEEecCCCceEEEEcCee
Q 027479 64 LGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGAN 138 (223)
Q Consensus 64 LgDRVLVk~~e~e~kT~gGIiLP~sa~~K~~~G~VVAVG~G~~~~~~~v-p~~VkvGD~Vlf~ky~G~eV~~dg~~ 138 (223)
-||+||+.+..-. ...+..|.||..-.....++..+ -..-.+||+|.+.+ .++-+||+.
T Consensus 36 ~Gd~vlv~k~~~~-------------~~~~~rGDiVvf~~~~~~~~~~iKRVig~pGd~v~i~~---~~l~vNg~~ 95 (163)
T TIGR02227 36 EGDRILVNKFAYG-------------TSDPKRGDIVVFKDPDDNKNIYVKRVIGLPGDKVEFRD---GKLYINGKK 95 (163)
T ss_pred CCCEEEEEEeEcC-------------CCCCCCCcEEEEecCCCCCceeEEEEEecCCCEEEEEC---CEEEECCEE
Confidence 4999999875321 12345566666543211111111 12334688888765 236666654
No 73
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=23.45 E-value=70 Score=28.09 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=18.9
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++. ...++||+|+.
T Consensus 62 ~~G~V~~vG~~v--------~~~~~Gd~V~~ 84 (347)
T cd05278 62 FVGEVVEVGSDV--------KRLKPGDRVSV 84 (347)
T ss_pred eEEEEEEECCCc--------cccCCCCEEEe
Confidence 579999999875 24799999996
No 74
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=23.39 E-value=73 Score=28.36 Aligned_cols=24 Identities=38% Similarity=0.558 Sum_probs=19.6
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. .+++||+|+..
T Consensus 61 ~~G~V~~vG~~v~--------~~~~Gd~V~~~ 84 (351)
T cd08285 61 AVGVVEEVGSEVK--------DFKPGDRVIVP 84 (351)
T ss_pred eEEEEEEecCCcC--------ccCCCCEEEEc
Confidence 5799999998752 47999999973
No 75
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=22.92 E-value=71 Score=28.95 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=18.8
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++. ..+++||+|+.
T Consensus 63 ~~G~V~~vG~~v--------~~~~~Gd~V~~ 85 (365)
T cd08278 63 GAGVVEAVGSAV--------TGLKPGDHVVL 85 (365)
T ss_pred eeEEEEEeCCCc--------ccCCCCCEEEE
Confidence 579999999874 24799999994
No 76
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=22.77 E-value=1.3e+02 Score=24.79 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=20.2
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEecCC
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKY 127 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ky 127 (223)
..|+|+++|++.. ..++||+|+..-+
T Consensus 31 ~~G~v~~~G~~~~--------~~~~Gd~V~~~~~ 56 (288)
T smart00829 31 CAGVVTRVGPGVT--------GLAVGDRVMGLAP 56 (288)
T ss_pred eEEEEEeeCCCCc--------CCCCCCEEEEEcC
Confidence 5799999998752 4689999997543
No 77
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=22.62 E-value=79 Score=27.78 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=19.2
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++... .+++||+|+..
T Consensus 68 ~~G~V~~vG~~v~~-------~~~vGd~V~~~ 92 (324)
T cd08291 68 GSGTVVAAGGGPLA-------QSLIGKRVAFL 92 (324)
T ss_pred eEEEEEEECCCccc-------cCCCCCEEEec
Confidence 57999999987521 26899999863
No 78
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=22.51 E-value=83 Score=25.92 Aligned_cols=25 Identities=44% Similarity=0.570 Sum_probs=19.9
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEecC
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK 126 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k 126 (223)
..|.|+++|++. ...++||+|+...
T Consensus 37 ~~G~v~~~G~~v--------~~~~~Gd~V~~~~ 61 (271)
T cd05188 37 GAGVVVEVGPGV--------TGVKVGDRVVVLP 61 (271)
T ss_pred cEEEEEEECCCC--------CcCCCCCEEEEcC
Confidence 569999999864 2479999999754
No 79
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=22.51 E-value=3.1e+02 Score=22.88 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=32.2
Q ss_pred ecccCCcEEEecCCCceEEEEcCeeeEEEeccceeeeeecCc--cCceeecCCeEEEEEecccccccceeEeecCccCCC
Q 027479 114 ISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDE--IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKP 191 (223)
Q Consensus 114 ~~VkvGD~Vlf~ky~G~eV~~dg~~y~ilre~DIlaii~~d~--~~~l~PL~DRVLVk~~~~e~~T~gGi~Lp~~a~ek~ 191 (223)
..+..||.|++.... . ++..||+.+..+++ +|.+..-++++.+....+.-. -+.+++. +-.
T Consensus 124 ~~i~~Gd~v~v~~~~----~--------~~~G~ivvv~~~~~~~vKrl~~~~~~i~L~s~N~~y~---~i~~~~~--~~~ 186 (199)
T TIGR00498 124 AGICDGDLLIVRSQK----D--------ARNGEIVAAMIDGEVTVKRFYKDGTKVELKPENPEFD---PIVLNAE--DVT 186 (199)
T ss_pred CCCCCCCEEEEecCC----C--------CCCCCEEEEEECCEEEEEEEEEECCEEEEEcCCCCCc---CCcCCCC--cEE
Confidence 456777777765421 1 22233333222222 355555555655555443211 1233321 223
Q ss_pred ceeEEEEee
Q 027479 192 SIGMVRVVN 200 (223)
Q Consensus 192 ~~G~VVAVG 200 (223)
..|+|+.+-
T Consensus 187 IiG~Vv~~~ 195 (199)
T TIGR00498 187 ILGKVVGVI 195 (199)
T ss_pred EEEEEEEEE
Confidence 478888764
No 80
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=22.31 E-value=1.6e+02 Score=22.94 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=24.0
Q ss_pred cccCCcEEEecCCC--c--eEEEE-cCeeeEEEecccee
Q 027479 115 SVKPGTQVIYSKYA--G--TELEF-NGANHLILREDDVV 148 (223)
Q Consensus 115 ~VkvGD~Vlf~ky~--G--~eV~~-dg~~y~ilre~DIl 148 (223)
.+++|+.|.|..-+ | .+++. ||..|.+|...|++
T Consensus 2 ~I~vGs~VRY~~TGT~G~V~diK~ed~~~wv~LD~t~L~ 40 (91)
T PF09871_consen 2 PIKVGSYVRYINTGTVGKVVDIKEEDGETWVLLDSTDLY 40 (91)
T ss_pred cceeCCEEEECCCCeEEEEEEEEEeCCCeEEEEccCCce
Confidence 47899999998865 5 44544 57778777666654
No 81
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=22.26 E-value=75 Score=27.95 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=19.3
Q ss_pred cceEEEEecCceecCCCeeeec-ccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDIS-VKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~-VkvGD~Vlf~ 125 (223)
..|+|+++|++.. . +++||+|+.-
T Consensus 71 ~~G~V~~vG~~v~--------~~~~~Gd~V~~~ 95 (341)
T cd08262 71 FCGEVVDYGPGTE--------RKLKVGTRVTSL 95 (341)
T ss_pred eeEEEEEeCCCCc--------CCCCCCCEEEec
Confidence 5799999998741 3 7899999975
No 82
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=22.18 E-value=78 Score=29.04 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=19.5
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++. ..+++||+|+..
T Consensus 62 ~~G~V~~vG~~v--------~~~~~Gd~V~~~ 85 (386)
T cd08283 62 FMGVVEEVGPEV--------RNLKVGDRVVVP 85 (386)
T ss_pred ceEEEEEeCCCC--------CCCCCCCEEEEc
Confidence 579999999874 247999999874
No 83
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=22.01 E-value=75 Score=27.89 Aligned_cols=25 Identities=44% Similarity=0.683 Sum_probs=19.7
Q ss_pred CcceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
...|+|+++|++.. ..++||+|+..
T Consensus 60 ~~~G~V~~~G~~v~--------~~~~Gd~V~~~ 84 (343)
T cd08235 60 EIAGEIVEVGDGVT--------GFKVGDRVFVA 84 (343)
T ss_pred ceEEEEEeeCCCCC--------CCCCCCEEEEc
Confidence 35799999998752 47899999963
No 84
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=21.87 E-value=77 Score=27.85 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=18.9
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|.|+++|++. ...++||+|+.
T Consensus 61 ~~G~V~~vG~~v--------~~~~~Gd~V~~ 83 (344)
T cd08284 61 FVGEVVEVGPEV--------RTLKVGDRVVS 83 (344)
T ss_pred eEEEEEeeCCCc--------cccCCCCEEEE
Confidence 579999999875 24799999986
No 85
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=21.73 E-value=82 Score=27.83 Aligned_cols=24 Identities=38% Similarity=0.487 Sum_probs=19.3
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++.. ..++||+|+..
T Consensus 62 ~~G~V~~~G~~v~--------~~~~Gd~V~~~ 85 (345)
T cd08286 62 GVGVVEEVGSAVT--------NFKVGDRVLIS 85 (345)
T ss_pred ceEEEEEeccCcc--------ccCCCCEEEEC
Confidence 5799999998752 47999999863
No 86
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=21.34 E-value=85 Score=27.84 Aligned_cols=23 Identities=39% Similarity=0.372 Sum_probs=18.8
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++. ..+++||+|++
T Consensus 61 ~~G~V~~vG~~v--------~~~~~Gd~V~~ 83 (337)
T cd05283 61 IVGIVVAVGSKV--------TKFKVGDRVGV 83 (337)
T ss_pred eeeEEEEECCCC--------cccCCCCEEEE
Confidence 579999999875 25799999974
No 87
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=21.32 E-value=86 Score=27.50 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=19.0
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++. ..+++||+|+.-
T Consensus 65 ~~G~V~~vG~~v--------~~~~~Gd~V~~~ 88 (340)
T cd05284 65 NAGWVEEVGSGV--------DGLKEGDPVVVH 88 (340)
T ss_pred eeEEEEEeCCCC--------CcCcCCCEEEEc
Confidence 479999999864 247999999853
No 88
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=20.79 E-value=85 Score=27.64 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=20.0
Q ss_pred CcceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
...|+|+++|++. ..+++||+|+..
T Consensus 59 ~~~G~V~~~g~~v--------~~~~~Gd~V~~~ 83 (343)
T cd08236 59 EFSGTVEEVGSGV--------DDLAVGDRVAVN 83 (343)
T ss_pred ceEEEEEEECCCC--------CcCCCCCEEEEc
Confidence 4679999999864 247999999864
No 89
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=20.72 E-value=1.6e+02 Score=25.43 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=19.6
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEecC
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK 126 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~k 126 (223)
..|.|+++|++. ...++||+|..-.
T Consensus 65 ~~G~v~~vG~~v--------~~~~~Gd~V~~~~ 89 (331)
T cd08273 65 LVGRVDALGSGV--------TGFEVGDRVAALT 89 (331)
T ss_pred eEEEEEEeCCCC--------ccCCCCCEEEEeC
Confidence 469999999865 2479999999753
No 90
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=20.55 E-value=86 Score=21.63 Aligned_cols=12 Identities=50% Similarity=0.703 Sum_probs=8.2
Q ss_pred ccCCeEEEEecc
Q 027479 63 PLGDRVLVKIKT 74 (223)
Q Consensus 63 PLgDRVLVk~~e 74 (223)
--+|+|+|+...
T Consensus 33 ~~gD~V~v~i~~ 44 (58)
T PF08206_consen 33 MDGDKVLVRITP 44 (58)
T ss_dssp -TT-EEEEEEEE
T ss_pred CCCCEEEEEEec
Confidence 468999998865
No 91
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=20.45 E-value=89 Score=28.41 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=18.8
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEe
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf 124 (223)
..|+|+++|++. ..+++||+|+.
T Consensus 61 ~~G~V~~vG~~v--------~~~~~Gd~V~~ 83 (375)
T cd08282 61 AMGEVEEVGSAV--------ESLKVGDRVVV 83 (375)
T ss_pred cEEEEEEeCCCC--------CcCCCCCEEEE
Confidence 579999999874 24789999986
No 92
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=20.19 E-value=93 Score=27.48 Aligned_cols=24 Identities=38% Similarity=0.410 Sum_probs=19.3
Q ss_pred cceEEEEecCceecCCCeeeecccCCcEEEec
Q 027479 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (223)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vlf~ 125 (223)
..|+|+++|++. ...++||+|+..
T Consensus 65 ~~G~V~~vG~~v--------~~~~~Gd~V~~~ 88 (341)
T PRK05396 65 FVGEVVEVGSEV--------TGFKVGDRVSGE 88 (341)
T ss_pred eEEEEEEeCCCC--------CcCCCCCEEEEC
Confidence 479999999875 247999999864
No 93
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=20.16 E-value=2.9e+02 Score=22.13 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=27.3
Q ss_pred EEEcCeeeEEEeccceeeeeecCccCceeecCCeEEEEEec
Q 027479 132 LEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAE 172 (223)
Q Consensus 132 V~~dg~~y~ilre~DIlaii~~d~~~~l~PL~DRVLVk~~~ 172 (223)
|+|++.+...+...||+..- +....-.-.+|.||..-..
T Consensus 30 V~f~~~~~~~v~~~~iI~~~--~~~~~~L~~GD~VLA~~~~ 68 (124)
T PF15057_consen 30 VEFDDGDTQEVPISDIIALS--DAMRHSLQVGDKVLAPWEP 68 (124)
T ss_pred EEECCCCEEEeChHHeEEcc--CcccCcCCCCCEEEEecCc
Confidence 56677777788888887655 3334455679999999443
Done!