BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027481
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AXJ|A Chain A, High Resolution Crystal Structure Of C3po
Length = 249
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 82 FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGL 140
F +++ +D +RE IR VV EIE +++ L +H +S + QV+
Sbjct: 24 FSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELC 83
Query: 141 KELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM- 199
+ Y +LAE++ G+YYR+ + W TQ ++ ++A + +LE G L+ E LG+
Sbjct: 84 AQKYQKLAELVP--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEXLGLK 141
Query: 200 -NQAE-FALDIEDYLIG 214
+Q+E F LD+EDYL+G
Sbjct: 142 ISQSEGFHLDVEDYLLG 158
>pdb|3RIU|A Chain A, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
pdb|3RIU|B Chain B, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 218
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 82 FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGL 140
F +++ +D +RE IR VV EIE +++ L +H +S + QV+
Sbjct: 11 FSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELC 70
Query: 141 KELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM- 199
+ Y +LAE++ G+YYR+ + W TQ ++ ++A + +LE G L+ E LG+
Sbjct: 71 AQKYQKLAELVP--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEXLGLK 128
Query: 200 -NQAE-FALDIEDYLIG 214
+Q+E F LD+EDYL+G
Sbjct: 129 ISQSEGFHLDVEDYLLG 145
>pdb|4DG7|A Chain A, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|B Chain B, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|C Chain C, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|D Chain D, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|E Chain E, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|F Chain F, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|G Chain G, Low Resolution Structure Of Drosophila Translin
pdb|4DG7|H Chain H, Low Resolution Structure Of Drosophila Translin
Length = 255
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 82 FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGL 140
F +++ +D +RE IR VV EIE +++ L +H +S + QV+
Sbjct: 30 FSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELC 89
Query: 141 KELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM- 199
+ Y +LAE++ G+YYR+ + W TQ ++ ++A + +LE G L+ E LG+
Sbjct: 90 AQKYQKLAELVP--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLK 147
Query: 200 -NQAE-FALDIEDYLIG 214
+Q+E F LD+EDYL+G
Sbjct: 148 ISQSEGFHLDVEDYLLG 164
>pdb|2QRX|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 235
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 82 FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGL 140
F +++ +D +RE IR VV EIE +++ L +H +S + QV+
Sbjct: 10 FSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELC 69
Query: 141 KELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM- 199
+ Y +LAE++ G+YYR+ + W TQ ++ ++A + +LE G L+ E LG+
Sbjct: 70 AQKYQKLAELVP--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLK 127
Query: 200 -NQAE-FALDIEDYLIG 214
+Q+E F LD+EDYL+G
Sbjct: 128 ISQSEGFHLDVEDYLLG 144
>pdb|2QVA|A Chain A, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|B Chain B, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|C Chain C, Crystal Structure Of Drosophila Melanogaster Translin
Protein
pdb|2QVA|D Chain D, Crystal Structure Of Drosophila Melanogaster Translin
Protein
Length = 247
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 82 FEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGL 140
F +++ +D +RE IR VV EIE +++ L +H +S + QV+
Sbjct: 22 FSNYQKYIDNEQEVRENIRIVVREIEHLSKEAQIKLQIIHSDLSQISAACGLARKQVELC 81
Query: 141 KELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM- 199
+ Y +LAE++ G+YYR+ + W TQ ++ ++A + +LE G L+ E LG+
Sbjct: 82 AQKYQKLAELVP--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLK 139
Query: 200 -NQAE-FALDIEDYLIG 214
+Q+E F LD+EDYL+G
Sbjct: 140 ISQSEGFHLDVEDYLLG 156
>pdb|1KEY|A Chain A, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|B Chain B, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|C Chain C, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
pdb|1KEY|D Chain D, Crystal Structure Of Mouse TestisBRAIN RNA-Binding Protein
(Tb-Rbp)
Length = 235
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 4/145 (2%)
Query: 74 APASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKP 133
A S+ + F + + L +RE IR VV +E R + L VHQ ++ ++
Sbjct: 6 ATMSVSEIFVELQGFLAAEQDIREEIRKVVQSLEQTAREILTLLQGVHQGTGFQDIPKRC 65
Query: 134 KAQVDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTE 192
+ + L + + P E YYRFH WR Q +V L AF+ +LET L+
Sbjct: 66 LKAREHFSTVKTHLTSLKTKFPAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREA 125
Query: 193 AEEKLGM---NQAEFALDIEDYLIG 214
E LG+ + F LD+EDYL G
Sbjct: 126 VTEILGIEPDREKGFHLDVEDYLSG 150
>pdb|1J1J|A Chain A, Crystal Structure Of Human Translin
pdb|1J1J|B Chain B, Crystal Structure Of Human Translin
pdb|1J1J|C Chain C, Crystal Structure Of Human Translin
pdb|1J1J|D Chain D, Crystal Structure Of Human Translin
Length = 240
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 95 LRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCEC 154
+RE IR VV +E R + L VHQ ++ ++ + + L + +
Sbjct: 32 IREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKF 91
Query: 155 PGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM---NQAEFALDIED 210
P E YYRFH WR Q +V L AF+ +LET L+ E LG+ + F LD+ED
Sbjct: 92 PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVED 151
Query: 211 YLIG 214
YL G
Sbjct: 152 YLSG 155
>pdb|3PJA|A Chain A, Crystal Structure Of Human C3po Complex
pdb|3PJA|B Chain B, Crystal Structure Of Human C3po Complex
pdb|3PJA|C Chain C, Crystal Structure Of Human C3po Complex
pdb|3PJA|D Chain D, Crystal Structure Of Human C3po Complex
pdb|3PJA|E Chain E, Crystal Structure Of Human C3po Complex
pdb|3PJA|F Chain F, Crystal Structure Of Human C3po Complex
pdb|3PJA|G Chain G, Crystal Structure Of Human C3po Complex
pdb|3PJA|H Chain H, Crystal Structure Of Human C3po Complex
pdb|3PJA|I Chain I, Crystal Structure Of Human C3po Complex
pdb|3QB5|A Chain A, Human C3po Complex In The Presence Of Mnso4
pdb|3QB5|B Chain B, Human C3po Complex In The Presence Of Mnso4
pdb|3QB5|C Chain C, Human C3po Complex In The Presence Of Mnso4
Length = 228
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 95 LRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCEC 154
+RE IR VV +E R + L VHQ ++ ++ + + L + +
Sbjct: 20 IREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSLKTKF 79
Query: 155 PGE-YYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGM---NQAEFALDIED 210
P E YYRFH WR Q +V L AF+ +LET L+ E LG+ + F LD+ED
Sbjct: 80 PAEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVED 139
Query: 211 YLIG 214
YL G
Sbjct: 140 YLSG 143
>pdb|3PJA|J Chain J, Crystal Structure Of Human C3po Complex
pdb|3PJA|K Chain K, Crystal Structure Of Human C3po Complex
pdb|3PJA|L Chain L, Crystal Structure Of Human C3po Complex
pdb|3QB5|K Chain K, Human C3po Complex In The Presence Of Mnso4
Length = 290
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 69 GGETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRP-LS 127
G + ++ + + F+ F+ +LD ER+ + +I ++ LLH S P +
Sbjct: 26 GKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDI-TVESKRTIFLLHRITSAPDME 84
Query: 128 EVLEKPKAQVDGLKELYGRLAEVLCECPGE-YYRFHNDWRSETQTVVSLLAFMHWLETGK 186
++L + + ++DG+++ ++ +V E GE ++FH + Q V ++F H+++T
Sbjct: 85 DILTESEIKLDGVRQ---KIFQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKTRS 141
Query: 187 LLMHTEAEEKL 197
L+ E ++L
Sbjct: 142 LISMDEINKQL 152
>pdb|1HCI|A Chain A, Crystal Structure Of The Rod Domain Of Alpha-Actinin
pdb|1HCI|B Chain B, Crystal Structure Of The Rod Domain Of Alpha-Actinin
Length = 476
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 83 EDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEV-LEKPKAQVDGLK 141
E F+ L EA R+ I A+ NE+E + + + + + S P S V +++ + + D +K
Sbjct: 289 EQFKATLPEADGERQSIMAIQNEVEKV---IQSYNIRISSSNPYSTVTMDELRTKWDKVK 345
Query: 142 ELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLET 184
+L + L E E R H + R Q A W++
Sbjct: 346 QLVPIRDQSLQE---ELARQHANERLRRQFAAQANAIGPWIQN 385
>pdb|2XUE|A Chain A, Crystal Structure Of Jmjd3
pdb|2XUE|B Chain B, Crystal Structure Of Jmjd3
Length = 509
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 165 WRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDI 208
W+ + Q ++ L AFM TG +L H LGMN + + +
Sbjct: 200 WKPQLQELLKLPAFMRVTSTGNMLSHV-GHTILGMNTVQLYMKV 242
>pdb|4ASK|A Chain A, Crystal Structure Of Jmjd3 With Gsk-J1
pdb|4ASK|B Chain B, Crystal Structure Of Jmjd3 With Gsk-J1
Length = 510
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 165 WRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDI 208
W+ + Q ++ L AFM TG +L H LGMN + + +
Sbjct: 201 WKPQLQELLKLPAFMRVTSTGNMLSHV-GHTILGMNTVQLYMKV 243
>pdb|1LKC|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From Salmonella Enterica
pdb|1LC5|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica In Its Apo State
pdb|1LC7|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With A
Substrate
pdb|1LC8|A Chain A, Crystal Structure Of L-Threonine-O-3-Phosphate
Decarboxylase From S. Enterica Complexed With Its
Reaction Intermediate
Length = 364
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 69 GGETDAPASM----EKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS 123
GG PA++ Q DF ++ G RA+++ ++ I R A H+HQ+
Sbjct: 9 GGNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDADYFHLHQA 67
>pdb|4EYU|A Chain A, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EYU|B Chain B, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EZ4|A Chain A, Free Kdm6b Structure
pdb|4EZ4|B Chain B, Free Kdm6b Structure
pdb|4EZH|A Chain A, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
pdb|4EZH|B Chain B, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
Length = 486
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 165 WRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDI 208
W+ + Q ++ L AFM TG +L H LGMN + + +
Sbjct: 183 WKPQLQELLKLPAFMRVTSTGNMLSHV-GHTILGMNTVQLYMKV 225
>pdb|2XXZ|A Chain A, Crystal Structure Of The Human Jmjd3 Jumonji Domain
pdb|2XXZ|B Chain B, Crystal Structure Of The Human Jmjd3 Jumonji Domain
Length = 332
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 165 WRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDI 208
W+ + Q ++ L AFM TG +L H LGMN + + +
Sbjct: 167 WKPQLQELLKLPAFMRVTSTGNMLSHV-GHTILGMNTVQLYMKV 209
>pdb|3UC9|A Chain A, Crystal Structure Of Yeast Irc6p - A Novel Type Of
Conserved Clathrin Accessory Protein
Length = 233
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 169 TQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYL 212
+ +++ F++W + + H + EKLG+++ + +D D+L
Sbjct: 156 SNAFTNVIEFVNWKRSKPTVNHNDYGEKLGLDRIQEIIDTHDWL 199
>pdb|1QUU|A Chain A, Crystal Structure Of Two Central Spectrin-Like Repeats
From Alpha-Actinin
Length = 250
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 83 EDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEV-LEKPKAQVDGLK 141
E F+ L EA R+ I A+ NE+E +++ + + + S P S V +++ + + D +K
Sbjct: 172 EQFKATLPEADGERQSIMAIQNEVE---KVIQSYNIRISSSNPYSTVTMDELRTKWDKVK 228
Query: 142 EL 143
+L
Sbjct: 229 QL 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,793,216
Number of Sequences: 62578
Number of extensions: 191130
Number of successful extensions: 504
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 26
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)