Query 027481
Match_columns 223
No_of_seqs 121 out of 311
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 17:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qb5_K Translin-associated pro 100.0 1.3E-39 4.3E-44 292.3 15.4 147 71-222 28-198 (290)
2 3axj_A GM27569P, translin; tra 100.0 5.6E-39 1.9E-43 282.7 13.8 142 76-222 18-166 (249)
3 1j1j_A Translin; testis/brain 100.0 9.2E-39 3.1E-43 279.9 14.6 144 74-222 11-163 (240)
4 3axj_B TRAX, translin associat 100.0 8E-38 2.7E-42 281.6 14.3 148 70-222 22-209 (298)
5 3uul_A Utrophin; spectrin repe 49.5 66 0.0023 22.7 9.8 65 85-152 38-102 (118)
6 3ltl_A Brefeldin A-inhibited g 49.5 15 0.0005 31.1 3.9 44 176-220 51-94 (211)
7 3uun_A Dystrophin; triple heli 45.3 77 0.0026 22.2 9.9 64 86-152 39-102 (119)
8 1m1j_C Fibrinogen gamma chain; 44.5 1.1E+02 0.0038 28.1 9.3 20 203-222 203-226 (409)
9 3oja_B Anopheles plasmodium-re 42.1 1.3E+02 0.0045 27.6 9.5 18 138-155 568-585 (597)
10 3ghg_A Fibrinogen alpha chain; 40.1 58 0.002 31.3 6.7 40 78-117 55-94 (562)
11 3gwk_C SAG1039, putative uncha 39.2 67 0.0023 22.3 5.6 25 128-152 55-79 (98)
12 1zke_A Hypothetical protein HP 39.2 1.1E+02 0.0037 22.1 7.6 53 97-149 5-73 (83)
13 3zbh_A ESXA; unknown function, 37.4 97 0.0033 21.2 6.5 25 128-152 56-80 (99)
14 1r8s_E ARNO; protein transport 37.2 29 0.00099 29.0 3.8 45 176-221 45-89 (203)
15 2b5u_A Colicin E3; high resolu 35.2 97 0.0033 29.7 7.3 77 83-163 294-380 (551)
16 3f6n_A Virion-associated prote 29.2 2E+02 0.0069 22.3 8.2 42 99-143 14-56 (129)
17 1ku3_A Sigma factor SIGA; heli 28.3 45 0.0015 22.1 2.9 28 174-201 17-44 (73)
18 2r09_A Cytohesin-3; autoinhibi 27.8 33 0.0011 30.3 2.7 45 176-221 47-91 (347)
19 3gbg_A TCP pilus virulence reg 27.5 1.1E+02 0.0038 24.9 5.9 34 182-216 229-271 (276)
20 1deq_A Fibrinogen (alpha chain 26.6 3.3E+02 0.011 25.0 9.1 31 76-106 63-93 (390)
21 4i0x_A ESAT-6-like protein MAB 26.4 1.7E+02 0.0057 20.4 7.0 57 97-153 10-72 (94)
22 1gak_A SP18, fertilization pro 26.3 44 0.0015 26.4 2.9 26 95-123 52-77 (141)
23 1vh6_A Flagellar protein FLIS; 25.4 1.3E+02 0.0045 23.5 5.6 27 126-152 99-125 (145)
24 1tty_A Sigma-A, RNA polymerase 24.9 54 0.0018 22.6 2.9 28 174-201 25-52 (87)
25 3mn2_A Probable ARAC family tr 24.7 54 0.0019 23.1 3.0 34 180-213 61-104 (108)
26 3qf7_D MRE11; ABC-ATPase, ATPa 24.2 1.4E+02 0.0047 19.3 4.5 27 80-106 8-34 (50)
27 2cob_A LCOR protein; MLR2, KIA 23.4 92 0.0031 21.9 3.8 46 163-219 12-58 (70)
28 1s94_A S-syntaxin; three helix 23.3 2.2E+02 0.0075 22.3 6.7 64 88-152 41-109 (180)
29 3fyq_A CG6831-PA (talin); 5-he 22.7 2.5E+02 0.0086 23.4 7.0 25 93-120 43-67 (199)
30 3qwg_A ESX-1 secretion-associa 22.6 1.2E+02 0.0041 22.7 4.7 39 168-214 26-78 (123)
31 3g67_A Methyl-accepting chemot 22.5 1.4E+02 0.005 24.7 5.6 26 96-121 118-143 (213)
32 3fav_A ESAT-6-like protein ESX 22.2 2E+02 0.0069 19.9 6.9 60 93-152 13-78 (101)
33 3hd7_B Syntaxin-1A; membrane p 21.6 1.9E+02 0.0066 21.2 5.6 38 84-121 8-45 (109)
34 2fb5_A Hypothetical membrane s 21.5 3.1E+02 0.01 23.0 7.4 86 93-192 12-100 (205)
35 3ktb_A Arsenical resistance op 21.4 2.1E+02 0.0072 21.4 5.8 61 134-200 26-104 (106)
36 3h6p_C ESAT-6-like protein ESX 21.4 1.6E+02 0.0053 20.4 4.9 62 91-152 10-77 (96)
37 3zx6_A HAMP, methyl-accepting 20.8 1.5E+02 0.0051 25.8 5.6 55 97-151 188-243 (341)
38 3fav_B ESAT-6, 6 kDa early sec 20.7 2.1E+02 0.0071 19.4 6.9 61 92-152 10-76 (94)
39 2w6b_A RHO guanine nucleotide 20.5 1.9E+02 0.0065 19.4 4.7 27 80-106 24-50 (56)
40 1deq_A Fibrinogen (alpha chain 20.0 3.9E+02 0.013 24.6 8.2 43 77-119 57-99 (390)
No 1
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=100.00 E-value=1.3e-39 Score=292.29 Aligned_cols=147 Identities=19% Similarity=0.353 Sum_probs=135.6
Q ss_pred CCCCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCchhHHhcHHHHHHHHHHHHHHH
Q 027481 71 ETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS---RPLSEVLEKPKAQVDGLKELYGRL 147 (223)
Q Consensus 71 ~~~~~~~v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~---~~~~~~l~~A~~~l~~i~~~~~~L 147 (223)
..++++++..+|++|+++||++||+||+|+|+|||| |+.||++||.+||. .+.+++|++|++.+++|++++++|
T Consensus 28 ~~~~~~~v~~~F~~~~~eLd~~~d~REriik~sRdI---t~~SK~~If~LhR~~~~~~~~~il~ea~~~L~~i~~~~~~L 104 (290)
T 3qb5_K 28 DVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDI---TVESKRTIFLLHRITSAPDMEDILTESEIKLDGVRQKIFQV 104 (290)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 346778999999999999999999999999999999 99999999999998 246789999999999999999999
Q ss_pred HHHhccCCCccchhccccchhHHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCC----C-----------------ccCc
Q 027481 148 AEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQ----A-----------------EFAL 206 (223)
Q Consensus 148 a~~l~~~p~~yYRY~~~ws~~lQE~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~----~-----------------~f~L 206 (223)
+++++ +.+||||+++|++++||||||++|++||++|+|+|++||++.|+++. + .|||
T Consensus 105 a~~l~--~~~~yry~~~~s~~lQEyVEA~sf~~yL~~~~Lit~eev~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 182 (290)
T 3qb5_K 105 AQELS--GEDMHQFHRAITTGLQEYVEAVSFQHFIKTRSLISMDEINKQLIFTTEDNGKENKTPSSDAQDKQFGTWRLRV 182 (290)
T ss_dssp HHHHS--SSCSTTTGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHTTEECC--------------------CEECCC
T ss_pred HHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhcccccccccccccccccccccccccceecC
Confidence 99999 55699999999999999999999999999999999999999999874 1 3999
Q ss_pred ChhHHhhhhhhccccC
Q 027481 207 DIEDYLIGEHSDECHI 222 (223)
Q Consensus 207 ~~eDYLlGL~DLtGEi 222 (223)
|++|||+||+|||||+
T Consensus 183 ~~eDYLlGL~DLtGEL 198 (290)
T 3qb5_K 183 TPVDYLLGVADLTGEL 198 (290)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999999996
No 2
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=100.00 E-value=5.6e-39 Score=282.65 Aligned_cols=142 Identities=29% Similarity=0.500 Sum_probs=132.6
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCchhHHhcHHHHHHHHHHHHHHHHHHh
Q 027481 76 ASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS----RPLSEVLEKPKAQVDGLKELYGRLAEVL 151 (223)
Q Consensus 76 ~~v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~----~~~~~~l~~A~~~l~~i~~~~~~La~~l 151 (223)
+.+.++|+.|+++||+++|+||+|+|+|||| ++.|+++|+.+|+. .+.++++++|++.++++++++++|++++
T Consensus 18 ~~i~~iF~~~~~~Ld~~~d~REriik~sRdI---t~~sk~~I~~Lhr~~~~~~~~~~~~~eA~~~l~~i~~~~~~L~~~l 94 (249)
T 3axj_A 18 FVNLDIFSNYQKYIDNEQEVRENIRIVVREI---EHLSKEAQIKLQIIHSDLSQISAACGLARKQVELCAQKYQKLAELV 94 (249)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHGGGGTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999 78888888888876 3477889999999999999999999999
Q ss_pred ccCCCccchhccccchhHHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCC---CccCcChhHHhhhhhhccccC
Q 027481 152 CECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQ---AEFALDIEDYLIGEHSDECHI 222 (223)
Q Consensus 152 ~~~p~~yYRY~~~ws~~lQE~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~---~~f~L~~eDYLlGL~DLtGEi 222 (223)
+ +.+||||+++|++++||||||++|++||++|+|+|++|+++.||++. ++|||+++|||+||+|||||+
T Consensus 95 ~--~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~~~~~~~~~f~v~~edYLlGL~DLtGEL 166 (249)
T 3axj_A 95 P--AGQYYRYSDHWTFITQRLIFIIALVIYLEAGFLVTRETVAEMLGLKISQSEGFHLDVEDYLLGILQLASEL 166 (249)
T ss_dssp C--TTCHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTCBSSTTTSSBCCHHHHHHHHHHHHHHH
T ss_pred c--cCchHHHhhhccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccCCCcccccCHHHHHHHHHHHHhHH
Confidence 9 55599999999999999999999999999999999999999999875 689999999999999999996
No 3
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=100.00 E-value=9.2e-39 Score=279.91 Aligned_cols=144 Identities=28% Similarity=0.429 Sum_probs=132.1
Q ss_pred CcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCchhHHhcHHHHHHHHHHHHHHH
Q 027481 74 APASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS------RPLSEVLEKPKAQVDGLKELYGRL 147 (223)
Q Consensus 74 ~~~~v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~------~~~~~~l~~A~~~l~~i~~~~~~L 147 (223)
.+.++.++|+.|+++||+++|+||+|+++|||| ++.|+++|+.+|+. .+.++++++|++.++++++++++|
T Consensus 11 ~~~~~~~~f~~~~~~Ld~~~d~REriik~sRdI---~~~Sk~~I~~Lhr~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~L 87 (240)
T 1j1j_A 11 GSMSVSEIFVELQGFLAAEQDIREEIRKVVQSL---EQTAREILTLLQGVHQGAGFQDIPKRCLKAREHFGTVKTHLTSL 87 (240)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHGGGGSSSSSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999 78888888888776 246788999999999999999999
Q ss_pred HHHhccCCCccchhccccchhHHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCC---CccCcChhHHhhhhhhccccC
Q 027481 148 AEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQ---AEFALDIEDYLIGEHSDECHI 222 (223)
Q Consensus 148 a~~l~~~p~~yYRY~~~ws~~lQE~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~---~~f~L~~eDYLlGL~DLtGEi 222 (223)
+++++ +.+||||+++|++++||||||++|++||++|+|+|++|+++.||++. ++||||++|||+||+|||||+
T Consensus 88 ~~~l~--~~~~yrY~~~~s~~lQE~VEA~~f~~yL~~~~L~t~eev~~~L~~~~~~~~~f~v~~edYLlGL~DltGEL 163 (240)
T 1j1j_A 88 KTKFP--AEQYYRFHEHWRFVLQRLVFLAAFVVYLETETLVTREAVTEILGIEPDREKGFHLDVEDYLSGVLILASEL 163 (240)
T ss_dssp HHTSC--GGGHHHHGGGTHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTCCCSSSSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcc--cchHHHHhccccHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCCCccccccCcCCHHHHHHHHHHHHHHH
Confidence 99999 55599999999999999999999999999999999999999999865 689999999999999999996
No 4
>3axj_B TRAX, translin associated factor X, isoform B; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 3riu_C
Probab=100.00 E-value=8e-38 Score=281.57 Aligned_cols=148 Identities=17% Similarity=0.287 Sum_probs=135.5
Q ss_pred CCCCCcchHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCchhHHhcHHHHHHHHHHH-H
Q 027481 70 GETDAPASMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS----RPLSEVLEKPKAQVDGLKEL-Y 144 (223)
Q Consensus 70 ~~~~~~~~v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~----~~~~~~l~~A~~~l~~i~~~-~ 144 (223)
.+++++++|.++|++|+++||++||+||+|+++|||| ++.||++|+.+||. .+.+++|++|++.++++++. |
T Consensus 22 ~~~~~~~~v~~~F~~~~~~Ld~~~d~RErIikisRdI---t~~Sk~~If~Lhr~~~~~~~~~~~l~eA~~~l~~i~~~~~ 98 (298)
T 3axj_B 22 AQLDEDSPIVQQFRIYSNELIMKHDRHERIVKLSRDI---TIESKRIIFLLHSIDSRKQNKEKVLEEARQRLNKLIAVNF 98 (298)
T ss_dssp -CCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHHHTHH
T ss_pred cccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999 89999999999987 23567899999999999875 6
Q ss_pred HHHHHHhccCCCccchhccccchhHHHHHHHHHHHHHHh---c------CCccCHHHHHHHhCCCCC-------------
Q 027481 145 GRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLE---T------GKLLMHTEAEEKLGMNQA------------- 202 (223)
Q Consensus 145 ~~La~~l~~~p~~yYRY~~~ws~~lQE~VEalsf~~yLe---~------g~Llt~eEv~~~Lgv~~~------------- 202 (223)
++|+.+++ +.+||||+++|++++||||||++|++||+ + |+|+|++||++.|+++.+
T Consensus 99 ~~la~~l~--~~~~y~y~~~~s~~lQE~VEA~~f~~yL~~~~~~~~~~~~~L~t~eev~~~L~~~~~~~~~~~~~~~~~~ 176 (298)
T 3axj_B 99 RAVALELR--DQDVYQFRSSYSPGLQEFIQAYTYMEYLCHEDAEGENETKSVSDWQAIQAVMQYVEESSQPKEEPTEGED 176 (298)
T ss_dssp HHHHHHTT--TSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGCCCCCHHHHHHHCEEECCCC-----------
T ss_pred HHHHHHcC--ccCHHHHHhccCHHHHHHHHHHHHHHHHhccccccccccCCCCCHHHHHHHhcccccccccccccccccc
Confidence 99999999 66699999999999999999999999999 8 999999999999987431
Q ss_pred -------------ccCcChhHHhhhhhhccccC
Q 027481 203 -------------EFALDIEDYLIGEHSDECHI 222 (223)
Q Consensus 203 -------------~f~L~~eDYLlGL~DLtGEi 222 (223)
+|||+++|||+||+|||||+
T Consensus 177 ~~~d~~~~~~~~~~f~v~~edYLlGL~DLtGEL 209 (298)
T 3axj_B 177 VQAIAQVESPKKFQFFVDPTEYILGLSDLTGEL 209 (298)
T ss_dssp ---------CCEEECCCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCHHHHHHHHHHHHhHH
Confidence 79999999999999999996
No 5
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=49.50 E-value=66 Score=22.68 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=33.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHhcHHHHHHHHHHHHHHHHHHhc
Q 027481 85 FRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLC 152 (223)
Q Consensus 85 fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~~~~~~~l~~A~~~l~~i~~~~~~La~~l~ 152 (223)
++..++++....+.|..--..|+........++..-|.. ++.....+..+..+...|..|.....
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~---~~~~~~i~~~l~~l~~rw~~L~~~~~ 102 (118)
T 3uul_A 38 VKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLS---DEEEFEIQEQMTLLNARWEALRVESM 102 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444455555554432 22334456666777777777666554
No 6
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=49.47 E-value=15 Score=31.08 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCccCHHHHHHHhCCCCCccCcChhHHhhhhhhccc
Q 027481 176 LAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDEC 220 (223)
Q Consensus 176 lsf~~yLe~g~Llt~eEv~~~Lgv~~~~f~L~~eDYLlGL~DLtG 220 (223)
.....||.+..=+.+.+|++.||-+ +.|...+-+..+.++|++|
T Consensus 51 ~~iA~FL~~~~~L~k~~igeyLg~~-~~fn~~vL~~yv~~fdF~~ 94 (211)
T 3ltl_A 51 EDIAQFLHQEERLDSTQVGEFLGDN-DKFNKEVMYAYVDQHDFSG 94 (211)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTCC-SHHHHHHHHHHHHTSCCCS
T ss_pred HHHHHHHHhCcCccHHHHHHHHhcc-chhHHHHHHHHHHhcCCCC
Confidence 4577788777889999999999965 4565666666666777776
No 7
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=45.28 E-value=77 Score=22.22 Aligned_cols=64 Identities=11% Similarity=0.031 Sum_probs=29.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHhcHHHHHHHHHHHHHHHHHHhc
Q 027481 86 RVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLC 152 (223)
Q Consensus 86 r~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~~~~~~~l~~A~~~l~~i~~~~~~La~~l~ 152 (223)
+..++++....+.|..--..|+........+|..-|.. ++.....+..+..+...|..|.....
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~---~~~~~~i~~~l~~l~~rw~~L~~~~~ 102 (119)
T 3uun_A 39 KDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLS---EDEETEVQEQMNLLNSRWECLRVASM 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSC---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333433344444445544432 22233455566666666666665544
No 8
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=44.47 E-value=1.1e+02 Score=28.14 Aligned_cols=20 Identities=15% Similarity=0.122 Sum_probs=17.2
Q ss_pred ccCcChhHHhhhhhhc----cccC
Q 027481 203 EFALDIEDYLIGEHSD----ECHI 222 (223)
Q Consensus 203 ~f~L~~eDYLlGL~DL----tGEi 222 (223)
.|.-+-.||-.|..++ .||-
T Consensus 203 ~F~R~W~~Yk~GFG~~~~~~~gEf 226 (409)
T 1m1j_C 203 DFRRNWVQYKEGFGHLSPDDTTEF 226 (409)
T ss_dssp CCCCCHHHHHHCEEEECTTSCCCE
T ss_pred cccCCHHHHHhhhCCcccCCCccE
Confidence 4888899999999999 8883
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.14 E-value=1.3e+02 Score=27.57 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhccCC
Q 027481 138 DGLKELYGRLAEVLCECP 155 (223)
Q Consensus 138 ~~i~~~~~~La~~l~~~p 155 (223)
...++.+++|-+++++.|
T Consensus 568 ~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 568 SLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 334444555555555443
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.15 E-value=58 Score=31.33 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 027481 78 MEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASL 117 (223)
Q Consensus 78 v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI 117 (223)
|.++=..+...+++..+.-|.+-+..+++++.++..+..|
T Consensus 55 LdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~L 94 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEIL 94 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH
Confidence 4555555555666666666666666666655555444444
No 11
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=39.21 E-value=67 Score=22.28 Aligned_cols=25 Identities=8% Similarity=0.214 Sum_probs=12.9
Q ss_pred hHHhcHHHHHHHHHHHHHHHHHHhc
Q 027481 128 EVLEKPKAQVDGLKELYGRLAEVLC 152 (223)
Q Consensus 128 ~~l~~A~~~l~~i~~~~~~La~~l~ 152 (223)
...++....+..+.+.+.+++..|.
T Consensus 55 ~~~~~~~~~~~~~~~~L~~i~~~L~ 79 (98)
T 3gwk_C 55 AQFNELSPKITEFAQLLEDINQQLL 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544
No 12
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=39.15 E-value=1.1e+02 Score=22.13 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----------cC-CCchh-----HHhcHHHHHHHHHHHHHHHHH
Q 027481 97 ERIRAVVNEIESITRLMHASLLHVH----------QS-RPLSE-----VLEKPKAQVDGLKELYGRLAE 149 (223)
Q Consensus 97 ErI~kisRdIe~~tr~sk~vI~~lH----------r~-~~~~~-----~l~~A~~~l~~i~~~~~~La~ 149 (223)
|||-.+-++||.+-.++.-+|...+ |+ .+.|+ .+++..+.+.++++++..|.+
T Consensus 5 Erid~ilk~IE~~q~eI~~lL~~AkiSl~DyImiKRGS~DmPe~L~~~~~~QideeV~~LKe~IdaLNK 73 (83)
T 1zke_A 5 EKIRKILADIEDSQNEIEMLLKLANLSLGDFIEIKRGSMDMPKGVNEAFFTQLSEEVERLKELINALNK 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTTSSCCCTTCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhheeccCccCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777776666666665544 34 33443 466677777777776655544
No 13
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=37.38 E-value=97 Score=21.16 Aligned_cols=25 Identities=8% Similarity=0.218 Sum_probs=13.2
Q ss_pred hHHhcHHHHHHHHHHHHHHHHHHhc
Q 027481 128 EVLEKPKAQVDGLKELYGRLAEVLC 152 (223)
Q Consensus 128 ~~l~~A~~~l~~i~~~~~~La~~l~ 152 (223)
....+....+..+.+.+..++..|.
T Consensus 56 ~~~~~~~~~~~~~~~~L~~i~~~L~ 80 (99)
T 3zbh_A 56 QQYQELRPSFEKMAVLLNEVGQQLH 80 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555554
No 14
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=37.20 E-value=29 Score=28.99 Aligned_cols=45 Identities=20% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCccCHHHHHHHhCCCCCccCcChhHHhhhhhhcccc
Q 027481 176 LAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDECH 221 (223)
Q Consensus 176 lsf~~yLe~g~Llt~eEv~~~Lgv~~~~f~L~~eDYLlGL~DLtGE 221 (223)
-....||....=+.+..|++.||-+ +.|...+-+..+.++|++|-
T Consensus 45 ~~iA~fL~~~~~l~k~~igeyLg~~-~~~n~~vl~~y~~~fdF~~~ 89 (203)
T 1r8s_E 45 EEIARFLYKGEGLNKTAIGDYLGER-EELNLAVLHAFVDLHEFTDL 89 (203)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTCC-SHHHHHHHHHHHHTCCCTTC
T ss_pred HHHHHHHHHCcCcCHHHHHHHHhcc-chHHHHHHHHHHHhcCCCCC
Confidence 4467777766679999999999954 44555555555666777663
No 15
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=35.16 E-value=97 Score=29.66 Aligned_cols=77 Identities=13% Similarity=0.236 Sum_probs=38.7
Q ss_pred HHHHHHHhhhhhHHHH------HHHHHHHHHHHHHHHHHHHHhhccCC----CchhHHhcHHHHHHHHHHHHHHHHHHhc
Q 027481 83 EDFRVKLDEAGSLRER------IRAVVNEIESITRLMHASLLHVHQSR----PLSEVLEKPKAQVDGLKELYGRLAEVLC 152 (223)
Q Consensus 83 ~~fr~eLDe~~d~REr------I~kisRdIe~~tr~sk~vI~~lHr~~----~~~~~l~~A~~~l~~i~~~~~~La~~l~ 152 (223)
..++++.||+..++++ +..+=|+.|++-.+.-..-..+-+.. ...++++..+..++.+..+++.....++
T Consensus 294 ~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~ 373 (551)
T 2b5u_A 294 DQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIK 373 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhh
Confidence 3445555555544433 35555555544333332222211111 1224566666667777777766666655
Q ss_pred cCCCccchhcc
Q 027481 153 ECPGEYYRFHN 163 (223)
Q Consensus 153 ~~p~~yYRY~~ 163 (223)
+||+|+.
T Consensus 374 ----~f~~~n~ 380 (551)
T 2b5u_A 374 ----QFNRFAH 380 (551)
T ss_dssp ----HHGGGTT
T ss_pred ----hhhhhcc
Confidence 3777765
No 16
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=29.18 E-value=2e+02 Score=22.35 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCchhHHhc-HHHHHHHHHHH
Q 027481 99 IRAVVNEIESITRLMHASLLHVHQSRPLSEVLEK-PKAQVDGLKEL 143 (223)
Q Consensus 99 I~kisRdIe~~tr~sk~vI~~lHr~~~~~~~l~~-A~~~l~~i~~~ 143 (223)
+++.++++ ...++.+|-.+-.+.+....++. |.+.+++|.++
T Consensus 14 ~~~~i~~l---~~~Ik~il~~~~st~~~~~~lEsiAAKIIkDisdk 56 (129)
T 3f6n_A 14 ILSDQKSM---KADIKAILELLGSQNPIKESLETVAAKIVNDLTKL 56 (129)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHhcCCCcchhhhHHHHHHHHHHHHHHH
Confidence 44444444 44555566655444333333433 33334444444
No 17
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=28.33 E-value=45 Score=22.08 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHhCCCC
Q 027481 174 SLLAFMHWLETGKLLMHTEAEEKLGMNQ 201 (223)
Q Consensus 174 Ealsf~~yLe~g~Llt~eEv~~~Lgv~~ 201 (223)
+.+.+.+++..+.=.|.+||++.+|++.
T Consensus 17 ~il~l~~~l~~~~~~s~~eIA~~l~is~ 44 (73)
T 1ku3_A 17 MVLKMRKGLIDGREHTLEEVGAYFGVTR 44 (73)
T ss_dssp HHHHHHHTTTTSSCCCHHHHHHHHTCCH
T ss_pred HHHHHHHhcccCCCCCHHHHHHHHCCCH
Confidence 3344555566556689999999999864
No 18
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=27.78 E-value=33 Score=30.28 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCccCHHHHHHHhCCCCCccCcChhHHhhhhhhcccc
Q 027481 176 LAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDECH 221 (223)
Q Consensus 176 lsf~~yLe~g~Llt~eEv~~~Lgv~~~~f~L~~eDYLlGL~DLtGE 221 (223)
-....||....=+++..|++.||-+ +.|.+.+-++.+.++|++|.
T Consensus 47 ~~ia~fl~~~~~l~k~~ig~~l~~~-~~~~~~vl~~~~~~~~f~~~ 91 (347)
T 2r09_A 47 EDVAQFLYKGEGLNKTVIGDYLGER-DDFNIKVLQAFVELHEFADL 91 (347)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHCC-SHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHhCcCcCHHHHHHHhcCC-CchHHHHHHHHHHhcCcCCC
Confidence 3456677666679999999999954 45666666666667777663
No 19
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=27.45 E-value=1.1e+02 Score=24.86 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=25.9
Q ss_pred HhcCCccCHHHHHHHhCCCC---------CccCcChhHHhhhhh
Q 027481 182 LETGKLLMHTEAEEKLGMNQ---------AEFALDIEDYLIGEH 216 (223)
Q Consensus 182 Le~g~Llt~eEv~~~Lgv~~---------~~f~L~~eDYLlGL~ 216 (223)
|.++. .+..||+..+|+.. ..+.++|.+|--..-
T Consensus 229 L~~~~-~si~eIA~~~Gf~~~s~F~r~Fkk~~G~tP~~yR~~~~ 271 (276)
T 3gbg_A 229 MKTGE-FKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLT 271 (276)
T ss_dssp HHHTC-CCHHHHHHHTTCSCHHHHHHHHHHHHSSCHHHHHHHTS
T ss_pred HhCCC-CCHHHHHHHhCCCCHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 34443 58999999999986 457999999976543
No 20
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.58 E-value=3.3e+02 Score=25.03 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 027481 76 ASMEKQFEDFRVKLDEAGSLRERIRAVVNEI 106 (223)
Q Consensus 76 ~~v~~~F~~fr~eLDe~~d~RErI~kisRdI 106 (223)
..+....+.+++.|+.....-..+-..++.|
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~ 93 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNI 93 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444455566666655554444444444444
No 21
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=26.41 E-value=1.7e+02 Score=20.43 Aligned_cols=57 Identities=4% Similarity=0.040 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC------CCchhHHhcHHHHHHHHHHHHHHHHHHhcc
Q 027481 97 ERIRAVVNEIESITRLMHASLLHVHQS------RPLSEVLEKPKAQVDGLKELYGRLAEVLCE 153 (223)
Q Consensus 97 ErI~kisRdIe~~tr~sk~vI~~lHr~------~~~~~~l~~A~~~l~~i~~~~~~La~~l~~ 153 (223)
.++...+.+|+.....++..+..++.. ........+-.....++...+..|+..+..
T Consensus 10 ~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~~~l~~ 72 (94)
T 4i0x_A 10 KFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALTDIASTLGS 72 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666677777777755 123344445555556677777877777763
No 22
>1gak_A SP18, fertilization protein; helical bundle, cell adhesion; 1.85A {Haliotis fulgens} SCOP: a.19.1.1
Probab=26.29 E-value=44 Score=26.36 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 027481 95 LRERIRAVVNEIESITRLMHASLLHVHQS 123 (223)
Q Consensus 95 ~RErI~kisRdIe~~tr~sk~vI~~lHr~ 123 (223)
-|||+++.+++- ++.||++|+.=|..
T Consensus 52 nreRlm~~C~~y---~~~Skkii~L~~~~ 77 (141)
T 1gak_A 52 NRERMMRYCMDY---ARYSKKILQLKHLP 77 (141)
T ss_dssp HHHHHHHBHHHH---HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhcCCc
Confidence 389999999999 99999999999875
No 23
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=25.42 E-value=1.3e+02 Score=23.48 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=18.4
Q ss_pred chhHHhcHHHHHHHHHHHHHHHHHHhc
Q 027481 126 LSEVLEKPKAQVDGLKELYGRLAEVLC 152 (223)
Q Consensus 126 ~~~~l~~A~~~l~~i~~~~~~La~~l~ 152 (223)
-.+.++++...+.++++.|.++.....
T Consensus 99 D~~~ldev~~ll~~LreaW~~i~~~~~ 125 (145)
T 1vh6_A 99 DTGMLAEVEGYVTDFRDAWKQAIQSER 125 (145)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356678888888888888888766554
No 24
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=24.91 E-value=54 Score=22.62 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCccCHHHHHHHhCCCC
Q 027481 174 SLLAFMHWLETGKLLMHTEAEEKLGMNQ 201 (223)
Q Consensus 174 Ealsf~~yLe~g~Llt~eEv~~~Lgv~~ 201 (223)
+.+.+.++|.++.=.|.+||++.+|++.
T Consensus 25 ~vl~l~~~l~~~~~~s~~EIA~~lgis~ 52 (87)
T 1tty_A 25 MVLRMRYGLLDGKPKTLEEVGQYFNVTR 52 (87)
T ss_dssp HHHHHHHTTTTSSCCCHHHHHHHHTCCH
T ss_pred HHHHHHHccCCCCCCCHHHHHHHHCCCH
Confidence 3444555576667789999999999874
No 25
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=24.66 E-value=54 Score=23.11 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=26.8
Q ss_pred HHHhcCCc-cCHHHHHHHhCCCC---------CccCcChhHHhh
Q 027481 180 HWLETGKL-LMHTEAEEKLGMNQ---------AEFALDIEDYLI 213 (223)
Q Consensus 180 ~yLe~g~L-lt~eEv~~~Lgv~~---------~~f~L~~eDYLl 213 (223)
..|.++.- ++..||+..+|+.. ..+.++|.+|.-
T Consensus 61 ~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~tP~~yr~ 104 (108)
T 3mn2_A 61 NLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMFGEKPSETLQ 104 (108)
T ss_dssp HHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHHHHHCcChHHHHH
Confidence 45666665 89999999999986 357889988864
No 26
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=24.19 E-value=1.4e+02 Score=19.27 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 027481 80 KQFEDFRVKLDEAGSLRERIRAVVNEI 106 (223)
Q Consensus 80 ~~F~~fr~eLDe~~d~RErI~kisRdI 106 (223)
+-|+-|++++.....-.|.++|+-.++
T Consensus 8 d~felfkey~k~r~~~he~l~k~~~el 34 (50)
T 3qf7_D 8 DYFELFKEYLKKREENHEKLLKILDEL 34 (50)
T ss_dssp CHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 358999999999988899999999888
No 27
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=23.43 E-value=92 Score=21.92 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=35.6
Q ss_pred cccc-hhHHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCccCcChhHHhhhhhhcc
Q 027481 163 NDWR-SETQTVVSLLAFMHWLETGKLLMHTEAEEKLGMNQAEFALDIEDYLIGEHSDE 219 (223)
Q Consensus 163 ~~ws-~~lQE~VEalsf~~yLe~g~Llt~eEv~~~Lgv~~~~f~L~~eDYLlGL~DLt 219 (223)
+.|. ..+|+.|+++ .+|. ++.-.++...||| +=|++|.+.|...-+
T Consensus 12 r~Yte~~L~~Ai~aV------r~g~-mS~~~Aak~yGVP----~sTL~~RVk~~~~~~ 58 (70)
T 2cob_A 12 RQYNSEILEEAISVV------MSGK-MSVSKAQSIYGIP----HSTLEYKVKERLGTL 58 (70)
T ss_dssp CCCCHHHHHHHHHHH------HTTS-SCHHHHHHHHTCC----HHHHHHHHHHHTTTT
T ss_pred cccCHHHHHHHHHHH------HcCC-ccHHHHHHHhCCC----hHHHHHHHHhhcccc
Confidence 3344 6788888887 5677 9999999999998 567888888775443
No 28
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=23.33 E-value=2.2e+02 Score=22.26 Aligned_cols=64 Identities=11% Similarity=0.210 Sum_probs=33.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----CCchhHHhcHHHHHHHHHHHHHHHHHHhc
Q 027481 88 KLDEAGSLRERIRAVVNEIESITRLMHASLLHVHQS-----RPLSEVLEKPKAQVDGLKELYGRLAEVLC 152 (223)
Q Consensus 88 eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~-----~~~~~~l~~A~~~l~~i~~~~~~La~~l~ 152 (223)
.+++-+++++.|.++...|++.-..=+.+|.. ... .++..+..++....+.|+..+..|.....
T Consensus 41 F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~-~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~ 109 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNVDAVKKKHSDILSA-PQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIE 109 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666776666666664333332222221 111 12334555666666777777777776553
No 29
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=22.68 E-value=2.5e+02 Score=23.43 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027481 93 GSLRERIRAVVNEIESITRLMHASLLHV 120 (223)
Q Consensus 93 ~d~RErI~kisRdIe~~tr~sk~vI~~l 120 (223)
.+.||.|.+.++.| .-..+.++..-
T Consensus 43 ~~~qe~Ilk~Ak~L---vedtk~LV~~a 67 (199)
T 3fyq_A 43 ADHREHILQTAKAL---VEDTKVLVTGA 67 (199)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHcc
Confidence 58899999999998 55666665554
No 30
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=22.63 E-value=1.2e+02 Score=22.72 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=25.5
Q ss_pred hHHHHHHHH---------HHHHHHhcCC--ccCHH---HHHHHhCCCCCccCcChhHHhhh
Q 027481 168 ETQTVVSLL---------AFMHWLETGK--LLMHT---EAEEKLGMNQAEFALDIEDYLIG 214 (223)
Q Consensus 168 ~lQE~VEal---------sf~~yLe~g~--Llt~e---Ev~~~Lgv~~~~f~L~~eDYLlG 214 (223)
..+++.+.+ +++..+|+|. -++.+ .+++.|||+ -|||+|
T Consensus 26 T~~elA~~~~~~G~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f~V~--------~~yl~~ 78 (123)
T 3qwg_A 26 TSAEVIAALKAEGITMSAPYLSQLRSGNRTNPSGATMAALANFFRIK--------AAYFTD 78 (123)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHTSSCCCCHHHHHHHHHHTTSC--------THHHHC
T ss_pred CHHHHHHHHcccCCCcCHHHHHHHHcCCCCCCCHHHHHHHHHHhCCC--------HHHHcC
Confidence 366666666 6777888774 46654 557777765 456665
No 31
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=22.52 E-value=1.4e+02 Score=24.68 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027481 96 RERIRAVVNEIESITRLMHASLLHVH 121 (223)
Q Consensus 96 RErI~kisRdIe~~tr~sk~vI~~lH 121 (223)
-++|++++.+-...++.+...|..++
T Consensus 118 A~Evr~La~~t~~~~~~I~~~i~~i~ 143 (213)
T 3g67_A 118 ANEVQNLSNETNEVTKQIVEKAREIL 143 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444455544444443
No 32
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=22.23 E-value=2e+02 Score=19.95 Aligned_cols=60 Identities=2% Similarity=0.050 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCchhHHhcHHHHHHHHHHHHHHHHHHhc
Q 027481 93 GSLRERIRAVVNEIESITRLMHASLLHVHQS------RPLSEVLEKPKAQVDGLKELYGRLAEVLC 152 (223)
Q Consensus 93 ~d~RErI~kisRdIe~~tr~sk~vI~~lHr~------~~~~~~l~~A~~~l~~i~~~~~~La~~l~ 152 (223)
...=.+|.....+|+......+..+..++.. ........+-.....++.+.|..|+..+.
T Consensus 13 ~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~ 78 (101)
T 3fav_A 13 AQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIR 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445555666665566667777777765 11222333333334455555666655554
No 33
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=21.57 E-value=1.9e+02 Score=21.24 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=22.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027481 84 DFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLHVH 121 (223)
Q Consensus 84 ~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~lH 121 (223)
..++.|.+-+++.++|.++-++|.......+.+=..+|
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~ 45 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVE 45 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777778888888887777443333333333343
No 34
>2fb5_A Hypothetical membrane spanning protein; structural genomics, membrane protein, PSI, protein structur initiative; 1.99A {Bacillus cereus} SCOP: d.320.1.1
Probab=21.49 E-value=3.1e+02 Score=23.00 Aligned_cols=86 Identities=7% Similarity=0.217 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCchhHHhcHHHHHHHHHHHHHHHHHHhccCCCccchhccc---cchhH
Q 027481 93 GSLRERIRAVVNEIESITRLMHASLLHVHQSRPLSEVLEKPKAQVDGLKELYGRLAEVLCECPGEYYRFHND---WRSET 169 (223)
Q Consensus 93 ~d~RErI~kisRdIe~~tr~sk~vI~~lHr~~~~~~~l~~A~~~l~~i~~~~~~La~~l~~~p~~yYRY~~~---ws~~l 169 (223)
...|+.+++--++| +.....+++.++.-+ .-....++++++.+.++..... . || .+-. .+..+
T Consensus 12 ~~~k~~~~~~l~~i---~~~~~~~~~~~~~~~------~c~l~~~~~~~~~~~~~~~~~~--~--y~-~~~~~aPgt~~i 77 (205)
T 2fb5_A 12 EELKIQTKQMIEIA---EKELSIMRNAIDKED------ECILCKMEDIHHMLANVQTLAA--T--YY-IQAYLSPYTESS 77 (205)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHTTCTT------CCGGGGHHHHHHHHHHHHHHHH--H--HH-HHHHHTTTCSCH
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHhccCC------ceehHhhhhHHHHHHHHHHHHH--H--HH-HHHHhCCCChHH
Confidence 56777777777777 566677777775421 1223445666666666655554 2 32 2222 33456
Q ss_pred HHHHHHHHHHHHHhcCCccCHHH
Q 027481 170 QTVVSLLAFMHWLETGKLLMHTE 192 (223)
Q Consensus 170 QE~VEalsf~~yLe~g~Llt~eE 192 (223)
+++++++.-+.==++|.|+-.+.
T Consensus 78 ~~l~~a~~~ls~~k~GALIVie~ 100 (205)
T 2fb5_A 78 SFITTAIQHLSARKHGALIVVER 100 (205)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHhccCeeEEEEEEC
Confidence 67888887777778888886665
No 35
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=21.40 E-value=2.1e+02 Score=21.42 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccchhccccchhHHHHHHHHHHHHHHh------------------cCCccCHHHHHH
Q 027481 134 KAQVDGLKELYGRLAEVLCECPGEYYRFHNDWRSETQTVVSLLAFMHWLE------------------TGKLLMHTEAEE 195 (223)
Q Consensus 134 ~~~l~~i~~~~~~La~~l~~~p~~yYRY~~~ws~~lQE~VEalsf~~yLe------------------~g~Llt~eEv~~ 195 (223)
...+-.+...+..|+. . +....||+ ....-|.|++--....+|+ .|+.+|.+|+++
T Consensus 26 d~eL~~~~~~~~~lk~--~--Gi~V~RyN--L~~~P~~F~~N~~V~~~L~~~G~~~LP~~~VDGevv~~G~yPt~eEl~~ 99 (106)
T 3ktb_A 26 NPELMRIAVVIESLKK--Q--GIIVTRHN--LRDEPQVYVSNKTVNDFLQKHGADALPITLVDGEIAVSQTYPTTKQMSE 99 (106)
T ss_dssp CHHHHHHHHHHHHHHH--T--TCCCEEEE--TTTCTTHHHHSHHHHHHHHTTCGGGCSEEEETTEEEECSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--C--CCEEEEEc--cccChHHHhcCHHHHHHHHHcCcccCCEEEECCEEEEeccCCCHHHHHH
Confidence 4445556666666665 2 44455553 4456688888888888986 589999999999
Q ss_pred HhCCC
Q 027481 196 KLGMN 200 (223)
Q Consensus 196 ~Lgv~ 200 (223)
++|++
T Consensus 100 ~lgi~ 104 (106)
T 3ktb_A 100 WTGVN 104 (106)
T ss_dssp HHCCC
T ss_pred HhCCC
Confidence 99975
No 36
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=21.40 E-value=1.6e+02 Score=20.43 Aligned_cols=62 Identities=5% Similarity=0.005 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCchhHHhcHHHHHHHHHHHHHHHHHHhc
Q 027481 91 EAGSLRERIRAVVNEIESITRLMHASLLHVHQS------RPLSEVLEKPKAQVDGLKELYGRLAEVLC 152 (223)
Q Consensus 91 e~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~------~~~~~~l~~A~~~l~~i~~~~~~La~~l~ 152 (223)
+-++.-.+|......|+.....++..|..++.. ........+=.....++++.+..|+..+.
T Consensus 10 ~~~~~a~~i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A~~ay~~~~~~W~~~~~~l~~~L~~i~~~l~ 77 (96)
T 3h6p_C 10 AMMAHAGDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSMSGTHE 77 (96)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHTGGGCCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666666666666677777777765 12333333444445566666777766665
No 37
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=20.82 E-value=1.5e+02 Score=25.79 Aligned_cols=55 Identities=9% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC-CCchhHHhcHHHHHHHHHHHHHHHHHHh
Q 027481 97 ERIRAVVNEIESITRLMHASLLHVHQS-RPLSEVLEKPKAQVDGLKELYGRLAEVL 151 (223)
Q Consensus 97 ErI~kisRdIe~~tr~sk~vI~~lHr~-~~~~~~l~~A~~~l~~i~~~~~~La~~l 151 (223)
++|++++.+-...+..+..+|..+... ........++.+.+.++...+.++...+
T Consensus 188 dEVRkLAe~t~~at~~I~~~i~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 243 (341)
T 3zx6_A 188 GEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIM 243 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 38
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=20.65 E-value=2.1e+02 Score=19.45 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CC----chhHHhcHHHHHHHHHHHHHHHHHHhc
Q 027481 92 AGSLRERIRAVVNEIESITRLMHASLLHVHQS--RP----LSEVLEKPKAQVDGLKELYGRLAEVLC 152 (223)
Q Consensus 92 ~~d~RErI~kisRdIe~~tr~sk~vI~~lHr~--~~----~~~~l~~A~~~l~~i~~~~~~La~~l~ 152 (223)
-.+.=.+|...+.+|+......+..+..++.. .+ ......+=.....++.+.+..|+..+.
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~ 76 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTIS 76 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666667777777777765 12 223334444455666667777777665
No 39
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=20.50 E-value=1.9e+02 Score=19.44 Aligned_cols=27 Identities=15% Similarity=0.369 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 027481 80 KQFEDFRVKLDEAGSLRERIRAVVNEI 106 (223)
Q Consensus 80 ~~F~~fr~eLDe~~d~RErI~kisRdI 106 (223)
.-+...+..||+++.-|.++-+++|.+
T Consensus 24 qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 24 QDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336666667777777777776666665
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.04 E-value=3.9e+02 Score=24.55 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027481 77 SMEKQFEDFRVKLDEAGSLRERIRAVVNEIESITRLMHASLLH 119 (223)
Q Consensus 77 ~v~~~F~~fr~eLDe~~d~RErI~kisRdIe~~tr~sk~vI~~ 119 (223)
.|.++=..|+..+++..+.-+.+.+...++.+.++.++.++..
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~ 99 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRG 99 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666677775555555555443
Done!