BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027482
MSTSAYISHICPLASFACTLRSKALSFQLRVSTHSPLHSSLRCRRPPPMSSDYAGTNFPA
NKLEPIQLNDESDFYQITSPDGFISISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVF
AHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFEIKKSEIPAFIKREHEFRFLAV
LPETLDGKPFTNRAVLCARSSDEEFFQIRCKGNYLRRSCCRRV

High Scoring Gene Products

Symbol, full name Information P value
AT4G16060 protein from Arabidopsis thaliana 2.2e-59

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027482
        (223 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2129985 - symbol:AT4G16060 "AT4G16060" species...   609  2.2e-59   1


>TAIR|locus:2129985 [details] [associations]
            symbol:AT4G16060 "AT4G16060" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] GO:GO:0005829 GO:GO:0009570
            EMBL:CP002687 IPI:IPI00530248 RefSeq:NP_193341.3 UniGene:At.33115
            ProteinModelPortal:F4JKZ9 PRIDE:F4JKZ9 EnsemblPlants:AT4G16060.1
            GeneID:827291 KEGG:ath:AT4G16060 OMA:RHCVLAA Uniprot:F4JKZ9
        Length = 289

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 119/148 (80%), Positives = 132/148 (89%)

Query:    66 IQLNDESDFYQITSPDGFISISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVFAHVAP 125
             ++L DESDF ++ S D  ISI+GFGSLLSE SARSTFP+L NFR+AKL+GFRRVFAH AP
Sbjct:    57 MELEDESDFEKLLSSDNRISITGFGSLLSERSARSTFPDLENFRIAKLQGFRRVFAHSAP 116

Query:   126 IFFERGIAKPETKEISSLSVEPCEGETLIVTVFEIKKSEIPAFIKREHEFRFLAVLPETL 185
             IFFERGIA PETKEISSLSVEPCEGE+L+VTVFEIK SEIPAFI RE EFRFLAV+PETL
Sbjct:   117 IFFERGIANPETKEISSLSVEPCEGESLVVTVFEIKSSEIPAFIGRELEFRFLAVVPETL 176

Query:   186 DGKPFTNRAVLCARSSDEEFFQIRCKGN 213
             +GKP+TN AVLC R SDEEFFQIRCKGN
Sbjct:   177 EGKPYTNSAVLCGRYSDEEFFQIRCKGN 204


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      223       223   0.00098  112 3  11 22  0.47    32
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.55u 0.17s 21.72t   Elapsed:  00:00:00
  Total cpu time:  21.55u 0.17s 21.72t   Elapsed:  00:00:00
  Start:  Fri May 10 18:17:28 2013   End:  Fri May 10 18:17:28 2013

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