Query 027482
Match_columns 223
No_of_seqs 63 out of 65
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 10:34:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06661 GGCT_like GGCT-like do 99.2 1.4E-11 3E-16 88.3 5.3 88 86-189 1-91 (99)
2 PF04752 ChaC: ChaC-like prote 99.0 1.6E-09 3.4E-14 91.3 8.1 107 84-200 1-116 (178)
3 COG3703 ChaC Uncharacterized p 98.4 3.5E-07 7.7E-12 79.4 6.0 82 80-173 8-93 (190)
4 PHA03014 hypothetical protein; 98.2 3.4E-06 7.4E-11 70.8 5.8 91 84-186 3-100 (163)
5 KOG3182 Predicted cation trans 98.0 1E-05 2.2E-10 71.4 6.6 121 77-207 3-130 (212)
6 PF06094 AIG2: AIG2-like famil 97.5 0.00023 5E-09 52.0 5.8 86 86-189 1-93 (102)
7 KOG4059 Uncharacterized conser 97.5 0.00011 2.3E-09 63.9 4.1 119 84-214 24-153 (193)
8 PF13772 AIG2_2: AIG2-like fam 94.3 0.056 1.2E-06 39.7 3.6 37 153-189 2-42 (83)
9 COG2105 Uncharacterized conser 59.4 12 0.00025 30.9 3.3 44 144-188 46-91 (120)
10 PRK06027 purU formyltetrahydro 24.9 91 0.002 28.2 3.6 82 81-171 166-254 (286)
11 COG0059 IlvC Ketol-acid reduct 22.8 48 0.001 31.9 1.5 41 68-112 7-52 (338)
12 PRK13403 ketol-acid reductoiso 22.7 50 0.0011 31.4 1.6 22 69-92 6-27 (335)
13 PRK07579 hypothetical protein; 21.6 93 0.002 28.2 3.0 84 74-165 59-144 (245)
14 PF02780 Transketolase_C: Tran 21.0 38 0.00083 25.8 0.4 18 78-95 6-23 (124)
15 TIGR00655 PurU formyltetrahydr 20.8 1.4E+02 0.0029 27.2 3.9 89 81-173 161-251 (280)
16 PRK13010 purU formyltetrahydro 20.2 1E+02 0.0022 28.2 3.0 87 81-171 170-258 (289)
17 PRK13011 formyltetrahydrofolat 20.0 1.1E+02 0.0023 27.9 3.1 89 81-173 166-256 (286)
No 1
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=99.23 E-value=1.4e-11 Score=88.31 Aligned_cols=88 Identities=19% Similarity=0.298 Sum_probs=73.7
Q ss_pred EEeecccccccccCcCCCCcccceeeeecCceEeeccccchhhhccCCCCCCcceeeeeeeeCCCceEEEEEEeeeCCCh
Q 027482 86 ISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFEIKKSEI 165 (223)
Q Consensus 86 ifGYGSLVSe~SAR~tFPdL~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsLSVeP~~g~~Ivg~VfEVP~~dw 165 (223)
||+||||++.......-+.....++|+|.||++.|.... ...+++|++|..+.|.|++++.++|
T Consensus 1 ~F~YGsl~~~~~~~~~~~~~~~~~~a~l~g~~l~~~~~~----------------~~p~~~~~~~~~v~G~v~~i~~~~l 64 (99)
T cd06661 1 LFVYGTLMDGEVLHARLGRALFLGPATLKGYRLVFGGGS----------------GYPGLVPGPGARVWGELYEVDPEDL 64 (99)
T ss_pred CEEeccCCChhHhHhhCCCCceEEEEEecCcEEEecCCC----------------ccCEEEeCCCCEEEEEEEEECHHHH
Confidence 699999999977554444455788999999999998432 4457888999999999999999999
Q ss_pred hhhhhccc---ceEeeeccccccCCCc
Q 027482 166 PAFIKREH---EFRFLAVLPETLDGKP 189 (223)
Q Consensus 166 pALdeRE~---eY~rlaV~~~~ldG~~ 189 (223)
+.||++|. .|++..|.....+|..
T Consensus 65 ~~LD~~E~~~~~Y~r~~v~v~~~~~~~ 91 (99)
T cd06661 65 ARLDAFEGVPGGYRREEVEVELEDGEG 91 (99)
T ss_pred HhhhhhcCCCCCeEEEEEEEEeCCCCE
Confidence 99999999 7999999887777654
No 2
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=98.99 E-value=1.6e-09 Score=91.34 Aligned_cols=107 Identities=21% Similarity=0.344 Sum_probs=78.5
Q ss_pred EEEEeecccccccccCcCCCCcccceeeeecCceEeeccccchhhhccCCCCCCcceeeeeeeeCCCceEEEEEEeeeCC
Q 027482 84 ISISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFEIKKS 163 (223)
Q Consensus 84 IsifGYGSLVSe~SAR~tFPdL~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsLSVeP~~g~~Ivg~VfEVP~~ 163 (223)
|-+||||||+-. ..|+ ...-++|.|+||+|.|...... -||-+.-+.+ -|+.++.++....|++|.||++
T Consensus 1 ~WVFGYGSLiW~----p~f~-~~e~~~a~i~Gy~R~F~~~s~~--hRGTpe~PGr---vltL~~~~~~~c~Gvayrv~~~ 70 (178)
T PF04752_consen 1 LWVFGYGSLIWN----PGFP-YAERRPAYIKGYHRRFCQGSTD--HRGTPEQPGR---VLTLDPGEEGSCWGVAYRVPEE 70 (178)
T ss_pred CEEEEeccceeC----CCCC-ccceEEEEecCcccceEeeccc--cCCCcCCCcc---eeeeeeCCCCEEEEEEEEecCc
Confidence 358999999987 5565 4568899999999999977754 4776544443 4788888889999999999985
Q ss_pred C----hhhhhhccc--ceEeeeccc---cccCCCcCCCceEEEecc
Q 027482 164 E----IPAFIKREH--EFRFLAVLP---ETLDGKPFTNRAVLCARS 200 (223)
Q Consensus 164 d----wpALdeRE~--eY~rlaV~~---~~ldG~~~~~~AVlCar~ 200 (223)
+ +..|+.||. .|.+..+.. .+.++.+...+|++..-.
T Consensus 71 ~~~~~l~~L~~RE~~~Gy~~~~v~~~~~~~~~~~~~~~~al~yv~~ 116 (178)
T PF04752_consen 71 DAEEVLEYLDEREMIGGYTRHWVPFYPEVDTDSGPVIVEALVYVAD 116 (178)
T ss_pred CHHHHHHHHhhcccccccceEEEEEEEeccCCCCceEEEEEEEEec
Confidence 5 679999999 587766555 233344433455554433
No 3
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=98.44 E-value=3.5e-07 Score=79.38 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=62.2
Q ss_pred CCCcEEEEeecccccccccCcCCCCcccceeeeecCceEeeccccchhhhccCCCCCCcceeeeeeeeCCCceEEEEEEe
Q 027482 80 PDGFISISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFE 159 (223)
Q Consensus 80 ~~g~IsifGYGSLVSe~SAR~tFPdL~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsLSVeP~~g~~Ivg~VfE 159 (223)
+...+-+||||||+=.-- .. ...-++|.++||+|.|...... -||-++-+..-+... .|.+..|++|.
T Consensus 8 ~~~~~WVFgYGSLmW~P~--f~---~~e~~~a~~~G~~Rsfc~~s~~--~RGT~~~PGlvl~L~-----~GGsc~GvafR 75 (190)
T COG3703 8 DPDELWVFGYGSLMWNPG--FE---FTEVRRATLHGYHRSFCLRSTD--HRGTAEQPGLVLGLD-----RGGSCEGVAYR 75 (190)
T ss_pred CCCCeEEEEecceeecCC--cc---ccceeEEEEecceeEEEEEEee--ecCCcCCCceEEEee-----CCCcEEEEEEE
Confidence 333399999999998722 33 3468899999999999877643 478766665544433 89999999999
Q ss_pred eeCCCh----hhhhhccc
Q 027482 160 IKKSEI----PAFIKREH 173 (223)
Q Consensus 160 VP~~dw----pALdeRE~ 173 (223)
||++.+ .-|.+||-
T Consensus 76 ip~~~~~~v~~yL~~RE~ 93 (190)
T COG3703 76 IPEAHAEEVLEYLREREM 93 (190)
T ss_pred cCchhhHHHHHHHHHhhc
Confidence 996665 57899998
No 4
>PHA03014 hypothetical protein; Provisional
Probab=98.17 E-value=3.4e-06 Score=70.82 Aligned_cols=91 Identities=13% Similarity=0.182 Sum_probs=72.1
Q ss_pred EEEEeecccccccccCcCCC---CcccceeeeecCceEeeccccchhhhccCCCCCCcceeeeeeeeCCCceEEEEEEee
Q 027482 84 ISISGFGSLLSENSARSTFP---NLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFEI 160 (223)
Q Consensus 84 IsifGYGSLVSe~SAR~tFP---dL~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsLSVeP~~g~~Ivg~VfEV 160 (223)
.-+|+|||=||....+..=| +-.....|+|.||+=.+...+ ...=+..|++|++|..+-|+|.||
T Consensus 3 ~~YfAYGSNl~~~qm~~Rcp~~~~a~~vg~a~L~~~~~~L~f~~------------~~~Ga~ATIvp~~g~~V~Gvlw~i 70 (163)
T PHA03014 3 KYYFGYGANQNINYLIHMHKLKIDFLNIKIGIILGHSFKLCYSK------------EIDSVIASIKKDDNGIVFGILYEF 70 (163)
T ss_pred eEEEEEccCcCHHHHHHhCCCCCCCceEEEEEeeccceEEeccC------------CcCCceEEEEECCCCEEEEEEEEe
Confidence 35899999998888888878 766677999996643333111 123345799999999999999999
Q ss_pred eCCChhhhhhccc----ceEeeeccccccC
Q 027482 161 KKSEIPAFIKREH----EFRFLAVLPETLD 186 (223)
Q Consensus 161 P~~dwpALdeRE~----eY~rlaV~~~~ld 186 (223)
+.+|+++||.-|- -|+++.|....++
T Consensus 71 ~~~dl~~LD~~EGvp~~~Y~~~~v~V~~~~ 100 (163)
T PHA03014 71 NESIMKKFDKQEFIDKNIYKLAKMNVLDLE 100 (163)
T ss_pred CHHHHHHHhhhcCCCcCceEEEEEEEEeCC
Confidence 9999999999997 5999988887665
No 5
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=98.05 E-value=1e-05 Score=71.37 Aligned_cols=121 Identities=17% Similarity=0.229 Sum_probs=86.3
Q ss_pred ccCCCCcEEEEeecccccccccCcCCCCcccceeeeecCceEeeccccchhhhccCCCCCCcceeeeeeeeCCCceEEEE
Q 027482 77 ITSPDGFISISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVT 156 (223)
Q Consensus 77 ~~~~~g~IsifGYGSLVSe~SAR~tFPdL~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsLSVeP~~g~~Ivg~ 156 (223)
-.+++..+=|||||||+=. ..|+ ...-++|-++||+|+|=.-.. +-||..+-..|- +|.+|.++.---|+
T Consensus 3 ~~s~~~~lWVFGYGSLiW~----Pgf~-y~~~~~gfI~Gy~RrF~q~s~--dHRGtp~~PGRv---~TLi~~~e~~~wGv 72 (212)
T KOG3182|consen 3 TTSDPMALWVFGYGSLIWK----PGFH-YDESIPGFIKGYKRRFWQGST--DHRGTPEHPGRV---ATLIPYEEAITWGV 72 (212)
T ss_pred CCCCCceEEEEeecceeec----CCCC-ccccchhhheehhhheecccc--ccCCCCCCCcee---EEeecCCcceEeeE
Confidence 3567788999999999977 3333 345889999999877654332 589998877775 46677666655899
Q ss_pred EEeeeCCC----hhhhhhccc-ceEeeeccccccCCC--cCCCceEEEeccChHHHHH
Q 027482 157 VFEIKKSE----IPAFIKREH-EFRFLAVLPETLDGK--PFTNRAVLCARSSDEEFFQ 207 (223)
Q Consensus 157 VfEVP~~d----wpALdeRE~-eY~rlaV~~~~ldG~--~~~~~AVlCar~SDeeY~~ 207 (223)
+|.|++.. +.-|+.||. .|.+..|.+-..|+. +--..+++|+.-.|.+|+.
T Consensus 73 ay~V~g~~~~~~l~yl~~RE~nGY~~~~v~f~~e~~~~~p~v~~vlvyvaTp~N~~yl 130 (212)
T KOG3182|consen 73 AYRVRGKQASEVLEYLNVRELNGYTTHEVEFYPEDAAELPEVLGVLVYVATPDNEYYL 130 (212)
T ss_pred EEEecchhHHHHHHHHHHHhhcCcceeeeeeeccCCCCCCceEEEEEEEecCCCcccc
Confidence 99998743 345778887 678877776443333 5556677888888877653
No 6
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=97.54 E-value=0.00023 Score=52.03 Aligned_cols=86 Identities=20% Similarity=0.212 Sum_probs=58.1
Q ss_pred EEeecccccccccCcCCCC---cccceeeeecCceEeeccccchhhhccCCCCCCcceeeeeeeeCCCc-eEEEEEEeee
Q 027482 86 ISGFGSLLSENSARSTFPN---LINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGE-TLIVTVFEIK 161 (223)
Q Consensus 86 ifGYGSLVSe~SAR~tFPd---L~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsLSVeP~~g~-~Ivg~VfEVP 161 (223)
+|-||||++.....+.++. -...+.+.+. .+.+. ..-.+-.+.|+++. .|.|.|++|.
T Consensus 1 lFvYGTL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----------------~~~~yP~l~~~~~~~~V~G~l~~v~ 62 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGRPGAKFIGEPATLG--GRYLY----------------GGGGYPALVPGEGSGRVEGELYEVD 62 (102)
T ss_dssp EEESSTTSTTSTTGHHGTSGSSEEEEEEEEEE--EEEEE----------------TTSSCEEEESCTTSSEEEEEEEEE-
T ss_pred CEEECCCCCCCcChhhhhccceEEEEeeEEEE--eEEEe----------------CCCCCCEEEEcCCCCEEEEEEEEEC
Confidence 6899999998765544431 0011222222 22221 22334567778887 9999999999
Q ss_pred CCChhhhhhccc---ceEeeeccccccCCCc
Q 027482 162 KSEIPAFIKREH---EFRFLAVLPETLDGKP 189 (223)
Q Consensus 162 ~~dwpALdeRE~---eY~rlaV~~~~ldG~~ 189 (223)
.++++.||+-|- .|+|..+.-...||+.
T Consensus 63 ~~~l~~LD~~E~~~~~Y~R~~v~v~~~~g~~ 93 (102)
T PF06094_consen 63 DEELARLDEYEGEGSLYRRVRVPVELGDGEE 93 (102)
T ss_dssp HHHHHHHHHHTTTTTSEEEEEEEEECCTSSE
T ss_pred HHHHHhhHhhcCCCCceEEEEEEEEeCCCCE
Confidence 999999999973 9999998887777765
No 7
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.00011 Score=63.89 Aligned_cols=119 Identities=25% Similarity=0.309 Sum_probs=90.0
Q ss_pred EEEEeecc-cccccccCcCCCCcccceeeeecCceEeeccccchhhhccCCCCCCcceeeeeeeeCCCceEEEEEEeeeC
Q 027482 84 ISISGFGS-LLSENSARSTFPNLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFEIKK 162 (223)
Q Consensus 84 IsifGYGS-LVSe~SAR~tFPdL~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsLSVeP~~g~~Ivg~VfEVP~ 162 (223)
..||+||| ||-+| -+..=|.-.-+=+|+|..||=.|+.... +-.=+.-++.|.+|.++-|+|--+|.
T Consensus 24 FlYFafGSNlL~~R-Ih~rnpsA~~~c~a~L~dfrLdFan~S~-----------~W~G~vATI~~t~GdeVWG~vWKm~~ 91 (193)
T KOG4059|consen 24 FLYFAFGSNLLIKR-IHIRNPSAVRICPALLPDFRLDFANESA-----------GWSGSVATIVPTQGDEVWGTVWKMDL 91 (193)
T ss_pred hhhhhcccchhhhh-eeecCCCceeeccccCcceeeecccccc-----------ccccceeEEecCCCCeEEEEEEEccc
Confidence 57899999 55543 2334454556678999999999997663 33445668999999999999999999
Q ss_pred CChhhhhhcc---cc-eEeeeccccccCCCcCCCceEEEec-cCh-----HHHHHhhcCccc
Q 027482 163 SEIPAFIKRE---HE-FRFLAVLPETLDGKPFTNRAVLCAR-SSD-----EEFFQIRCKGNY 214 (223)
Q Consensus 163 ~dwpALdeRE---~e-Y~rlaV~~~~ldG~~~~~~AVlCar-~SD-----eeY~~~RC~~~~ 214 (223)
+.+|.|||.| .. |.++.|-..+.+|+.+++.+-+=.- ++| ..|.+.-|+|.+
T Consensus 92 snl~slDeQEgv~~G~Y~~~~V~V~t~eg~~itcR~Yl~snl~~~P~~PSp~Yk~~i~~GAk 153 (193)
T KOG4059|consen 92 SNLPSLDEQEGVSQGIYEPRTVYVKTHEGESITCRAYLLSNLYELPKQPSPTYKQCIVKGAK 153 (193)
T ss_pred ccCccchhhhcccccceEEEEEEEecCCCceeehhHhhhhhhhhccCCCCchHHhhhhhccc
Confidence 9999999999 55 9999999999999876655543322 122 367777777654
No 8
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=94.33 E-value=0.056 Score=39.70 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=33.9
Q ss_pred EEEEEEeeeCCChhhhhhccc----ceEeeeccccccCCCc
Q 027482 153 LIVTVFEIKKSEIPAFIKREH----EFRFLAVLPETLDGKP 189 (223)
Q Consensus 153 Ivg~VfEVP~~dwpALdeRE~----eY~rlaV~~~~ldG~~ 189 (223)
+.|+|++|+.++++.||.+|. .|++..|.....||++
T Consensus 2 V~Gvly~l~~~d~~~LD~~Eg~~~g~Y~~~~v~V~~~~g~~ 42 (83)
T PF13772_consen 2 VWGVLYELSEEDLESLDRYEGVPIGAYRRIEVTVSTADGKP 42 (83)
T ss_dssp EEEEEEEEEGGGHHHHHHHTTTTTTSEEEEEEEEEETTCEE
T ss_pred EEEEEEEECHHHHHHHHHhcCCCCCCEEEEEEEEEcCCCCE
Confidence 679999999999999999998 7999999988888876
No 9
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=59.44 E-value=12 Score=30.94 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=34.1
Q ss_pred eeeeCCCceEEEEEEeeeCCChhhhhhcccc--eEeeeccccccCCC
Q 027482 144 SVEPCEGETLIVTVFEIKKSEIPAFIKREHE--FRFLAVLPETLDGK 188 (223)
Q Consensus 144 SVeP~~g~~Ivg~VfEVP~~dwpALdeRE~e--Y~rlaV~~~~ldG~ 188 (223)
-+.|.++ .|+|-|++|+++.|++||+=|-- |.+..|.-..-.|+
T Consensus 46 ~~~~g~~-~V~Gevy~~d~~~l~~LDelE~~~~y~r~~v~v~~~~G~ 91 (120)
T COG2105 46 GLVPGEG-KVHGEVYRIDEETLEALDELEDYGGYYRREVEVTTPLGS 91 (120)
T ss_pred EEcCCCC-EEEEEEEEECHHHHhhhhhhhccCceEEEEEEEEcCCCC
Confidence 4456666 89999999999999999999984 58877744444544
No 10
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=24.93 E-value=91 Score=28.19 Aligned_cols=82 Identities=15% Similarity=0.339 Sum_probs=54.3
Q ss_pred CCcEEEEeecccccccccCcCCCC-cccceeeeecCceEeeccccchhhhccCCCCCCcceeeee-----eeeCCCceEE
Q 027482 81 DGFISISGFGSLLSENSARSTFPN-LINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLS-----VEPCEGETLI 154 (223)
Q Consensus 81 ~g~IsifGYGSLVSe~SAR~tFPd-L~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsLS-----VeP~~g~~Iv 154 (223)
...|-.+||+.++...- -..||. +.|++|+-|+-||-. .+++ +-|.+ ....+.+| .+-|.|.-|.
T Consensus 166 ~Dlivlagy~~il~~~~-l~~~~~~iiNiHpSLLP~yrG~----~~~~--~ai~~--G~~~tG~TiH~v~~~~D~G~Ii~ 236 (286)
T PRK06027 166 PDLVVLARYMQILSPDF-VARFPGRIINIHHSFLPAFKGA----KPYH--QAYER--GVKLIGATAHYVTADLDEGPIIE 236 (286)
T ss_pred CCEEEEecchhhcCHHH-HhhccCCceecCcccCCCCCCC----CHHH--HHHHC--CCCeEEEEEEEEcCCCcCCCcEE
Confidence 57899999999998643 344554 899999999999843 2221 11222 12334444 4458888888
Q ss_pred EEEEee-eCCChhhhhhc
Q 027482 155 VTVFEI-KKSEIPAFIKR 171 (223)
Q Consensus 155 g~VfEV-P~~dwpALdeR 171 (223)
-..+.| |++.+-.|.+|
T Consensus 237 Q~~v~i~~~dt~~~L~~r 254 (286)
T PRK06027 237 QDVIRVDHRDTAEDLVRA 254 (286)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 778888 46666677666
No 11
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=22.84 E-value=48 Score=31.90 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=25.2
Q ss_pred cCCCCCcccccCCCCcEEEEeecc-----cccccccCcCCCCcccceeee
Q 027482 68 LNDESDFYQITSPDGFISISGFGS-----LLSENSARSTFPNLINFRVAK 112 (223)
Q Consensus 68 l~~~~df~~~~~~~g~IsifGYGS-----LVSe~SAR~tFPdL~nfR~Ar 112 (223)
+..+.|++.|. ++.|.|+|||| =+|-|- +..--..+.|.+.
T Consensus 7 yd~da~l~~Lk--gK~iaIIGYGsQG~ahalNLRD--SGlnViiGlr~g~ 52 (338)
T COG0059 7 YDEDADLDLLK--GKKVAIIGYGSQGHAQALNLRD--SGLNVIIGLRKGS 52 (338)
T ss_pred ecccCChhHhc--CCeEEEEecChHHHHHHhhhhh--cCCcEEEEecCCc
Confidence 34567777444 88999999999 356544 4433333344433
No 12
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=22.70 E-value=50 Score=31.44 Aligned_cols=22 Identities=14% Similarity=0.413 Sum_probs=18.5
Q ss_pred CCCCCcccccCCCCcEEEEeeccc
Q 027482 69 NDESDFYQITSPDGFISISGFGSL 92 (223)
Q Consensus 69 ~~~~df~~~~~~~g~IsifGYGSL 92 (223)
..+.|++.|. ++.|.|+||||.
T Consensus 6 ~~d~~~~~Lk--gKtVGIIG~GsI 27 (335)
T PRK13403 6 EKDANVELLQ--GKTVAVIGYGSQ 27 (335)
T ss_pred cccCChhhhC--cCEEEEEeEcHH
Confidence 4577888887 889999999995
No 13
>PRK07579 hypothetical protein; Provisional
Probab=21.59 E-value=93 Score=28.21 Aligned_cols=84 Identities=12% Similarity=-0.007 Sum_probs=51.5
Q ss_pred cccccCCCCcEEEEeecccccccccCcCCCCcccceeeeecCceEeeccccchhhhccCCCCCCcceeee--eeeeCCCc
Q 027482 74 FYQITSPDGFISISGFGSLLSENSARSTFPNLINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSL--SVEPCEGE 151 (223)
Q Consensus 74 f~~~~~~~g~IsifGYGSLVSe~SAR~tFPdL~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsL--SVeP~~g~ 151 (223)
+..+......+-.+|||-++...-.. .+ ...|+|++-|+.|| ..+++.+ -|.+.+.-.++.. ...-|.|.
T Consensus 59 ~~~~~~~~DliVvvayg~ilp~~iL~-~~-~~iNiHpSLLP~yR----GaaPi~w--AI~nGe~tGvTih~mde~lDtGd 130 (245)
T PRK07579 59 VAEIVERYDLVLSFHCKQRFPAKLVN-GV-RCINIHPGFNPYNR----GWFPQVF--SIINGLKIGATIHEMDEQLDHGP 130 (245)
T ss_pred HHhhhcCCCEEEEchhhccCCHHHHh-hC-CEEEEcCCcCCCCC----CcCHHHH--HHHCCCeEEEEEEEEcCCCCCCC
Confidence 33444445678999999888775422 23 48999999999987 4555543 2222221133322 22337787
Q ss_pred eEEEEEEeeeCCCh
Q 027482 152 TLIVTVFEIKKSEI 165 (223)
Q Consensus 152 ~Ivg~VfEVP~~dw 165 (223)
-|.-..++|..++-
T Consensus 131 Ii~Q~~v~I~~~dt 144 (245)
T PRK07579 131 IIAQREVEIESWDS 144 (245)
T ss_pred eeEEEEEEcCCCCC
Confidence 78777888865443
No 14
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=20.99 E-value=38 Score=25.77 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=15.8
Q ss_pred cCCCCcEEEEeecccccc
Q 027482 78 TSPDGFISISGFGSLLSE 95 (223)
Q Consensus 78 ~~~~g~IsifGYGSLVSe 95 (223)
..++..|++++|||.+.+
T Consensus 6 ~~~g~di~iia~G~~~~~ 23 (124)
T PF02780_consen 6 LREGADITIIAYGSMVEE 23 (124)
T ss_dssp EESSSSEEEEEETTHHHH
T ss_pred EeCCCCEEEEeehHHHHH
Confidence 357899999999999987
No 15
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=20.79 E-value=1.4e+02 Score=27.18 Aligned_cols=89 Identities=19% Similarity=0.302 Sum_probs=57.4
Q ss_pred CCcEEEEeecccccccccCcCCCC-cccceeeeecCceEeeccccchhhhccCCCCCCcceeeeeeeeCCCceEEEEEEe
Q 027482 81 DGFISISGFGSLLSENSARSTFPN-LINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFE 159 (223)
Q Consensus 81 ~g~IsifGYGSLVSe~SAR~tFPd-L~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsLSVeP~~g~~Ivg~VfE 159 (223)
...|-..||+.+|++. --..||. +.|++|+-|+.||-.=.|-.. +++|. +.-.--+=+++.+-|.|.-|.=..+.
T Consensus 161 ~Dlivlagym~il~~~-~l~~~~~~iINiHpSLLP~f~G~~p~~~a--i~~G~-k~tG~TvH~V~e~lD~GpII~Q~~v~ 236 (280)
T TIGR00655 161 VDLVVLAKYMQILSPD-FVKRYPNKIINIHHSFLPAFIGANPYQRA--YERGV-KIIGATAHYVTEELDEGPIIEQDVVR 236 (280)
T ss_pred CCEEEEeCchhhCCHH-HHhhccCCEEEecCCcCCCCCCcCHHHHH--HHcCC-CeEEEEEEEEcCCCcCCCeEEEEEEE
Confidence 5789999999999974 2345664 899999999999843211111 13332 00111223444455888888888888
Q ss_pred e-eCCChhhhhhccc
Q 027482 160 I-KKSEIPAFIKREH 173 (223)
Q Consensus 160 V-P~~dwpALdeRE~ 173 (223)
| |.+.+..|.+|=+
T Consensus 237 I~~~dt~~~L~~ri~ 251 (280)
T TIGR00655 237 VDHTDNVEDLIRAGR 251 (280)
T ss_pred cCCCCCHHHHHHHHH
Confidence 8 4677777777644
No 16
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=20.23 E-value=1e+02 Score=28.17 Aligned_cols=87 Identities=15% Similarity=0.212 Sum_probs=54.5
Q ss_pred CCcEEEEeecccccccccCcCCCC-cccceeeeecCceEeeccccchhhhccCCCCCCcceeeeeeeeCCCceEEEEEEe
Q 027482 81 DGFISISGFGSLLSENSARSTFPN-LINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFE 159 (223)
Q Consensus 81 ~g~IsifGYGSLVSe~SAR~tFPd-L~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsLSVeP~~g~~Ivg~VfE 159 (223)
...|-..||+-+++..- -..||. +.|++|+-|+.||-.-.|-.. +.+|. +.-.--+=+++-+-|.|.-|.=..+.
T Consensus 170 ~Dlivlagym~il~~~~-l~~~~~~iiNiHpSlLP~f~G~~~~~~a--i~~G~-k~tG~TvH~v~~~lD~GpII~Q~~v~ 245 (289)
T PRK13010 170 AELVVLARYMQVLSDDL-SRKLSGRAINIHHSFLPGFKGARPYHQA--HARGV-KLIGATAHFVTDDLDEGPIIEQDVER 245 (289)
T ss_pred CCEEEEehhhhhCCHHH-HhhccCCceeeCcccCCCCCCCCHHHHH--HHcCC-CeEEEEEEEEcCCCCCCCceEEEEEE
Confidence 47899999999998643 345654 999999999999854333221 12332 00111122333444788878877888
Q ss_pred ee-CCChhhhhhc
Q 027482 160 IK-KSEIPAFIKR 171 (223)
Q Consensus 160 VP-~~dwpALdeR 171 (223)
|. ++....|.+|
T Consensus 246 V~~~dt~e~L~~r 258 (289)
T PRK13010 246 VDHSYSPEDLVAK 258 (289)
T ss_pred cCCCCCHHHHHHH
Confidence 85 5555566555
No 17
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=20.03 E-value=1.1e+02 Score=27.89 Aligned_cols=89 Identities=16% Similarity=0.216 Sum_probs=55.0
Q ss_pred CCcEEEEeecccccccccCcCCCC-cccceeeeecCceEeeccccchhhhccCCCCCCcceeeeeeeeCCCceEEEEEEe
Q 027482 81 DGFISISGFGSLLSENSARSTFPN-LINFRVAKLRGFRRVFAHVAPIFFERGIAKPETKEISSLSVEPCEGETLIVTVFE 159 (223)
Q Consensus 81 ~g~IsifGYGSLVSe~SAR~tFPd-L~nfR~ArL~GwRRvw~Hta~iFF~RGIA~~~treiAsLSVeP~~g~~Ivg~VfE 159 (223)
...|-..||+.++...- -..||. +.|++|+-|+-||=...|-.. +.+|. +.-.--+=+++-+-|.|.-|.-..+.
T Consensus 166 ~Dlivlagy~~il~~~~-l~~~~~~iiNiHpSLLP~~rG~~~~~~a--i~~G~-~~tG~TvH~v~~~~D~G~Ii~Q~~v~ 241 (286)
T PRK13011 166 AELVVLARYMQVLSPEL-CRKLAGRAINIHHSFLPGFKGAKPYHQA--YERGV-KLIGATAHYVTDDLDEGPIIEQDVER 241 (286)
T ss_pred cCEEEEeChhhhCCHHH-HhhccCCeEEeccccCCCCCCCcHHHHH--HHCCC-CeEEEEEEEEcCCCcCCCcEEEEEEE
Confidence 46788899999999753 344554 899999999999854332221 12221 00011122334455788777777777
Q ss_pred ee-CCChhhhhhccc
Q 027482 160 IK-KSEIPAFIKREH 173 (223)
Q Consensus 160 VP-~~dwpALdeRE~ 173 (223)
|. ++....|.+|=+
T Consensus 242 I~~~dt~~~L~~r~~ 256 (286)
T PRK13011 242 VDHAYSPEDLVAKGR 256 (286)
T ss_pred cCCCCCHHHHHHHHH
Confidence 74 566667777644
Done!