BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027484
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
(Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.90 A Resolution
Length = 248
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 146 GFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWV 185
GFG + +N WV+SR+ +E+D P E + TWV
Sbjct: 47 GFGIA-TLNEDNYTWVLSRLAIELDEXPYQYEKFSVQTWV 85
>pdb|4GAK|A Chain A, Crystal Structure Of Acyl-Acp Thioesterase From Spirosoma
Linguale
Length = 250
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 106 TVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRM 165
T +R YE ++ ++ NL QE+A + + G G + + + W + R
Sbjct: 11 TFTLRGYECDAFGRXSIPALXNLXQESANRNA-----IDYGIGIA-DLAQKGVGWXLXRF 64
Query: 166 QVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARA-TRYIMYALEE 221
+ I YP +G+ +++ T+ K + RD+ + + G + A A + +++++ E+
Sbjct: 65 CLRIHQYPRYGDTIQLXTYPTTVDKYFIHRDFRVLA-TDGTLLADARSTWLVFSXEK 120
>pdb|2FGY|A Chain A, Beta Carbonic Anhydrase From The Carboxysomal Shell Of
Halothiobacillus Neapolitanus (Csosca)
pdb|2FGY|B Chain B, Beta Carbonic Anhydrase From The Carboxysomal Shell Of
Halothiobacillus Neapolitanus (Csosca)
Length = 542
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 18/81 (22%)
Query: 77 IRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATL--ESILNLFQETAL 134
IR +IP K F++PYR+ ++ V Y QT+ + PD+ + E+ILN +
Sbjct: 330 IRVHIPDSKGFLNPYRY---VDNTVTYAQTL-----HLAPDEARVIIHEAILNANRSDG- 380
Query: 135 NHVWMSGLLSNGFGATHGMMR 155
W G NG A+ GM R
Sbjct: 381 ---WAKG---NGV-ASEGMRR 394
>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
Maltooligosyl Trehalose Synthase
Length = 704
Score = 30.4 bits (67), Expect = 0.75, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 108 VVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHG 152
++ +Y + P K + + + L+ F E + H+++S +L G+THG
Sbjct: 3 LLSTYRLQPMKFSEIRNRLDYFVELGVTHLYLSPVLKARPGSTHG 47
>pdb|2GPF|A Chain A, Solution Nmr Structure Of Protein Pa22412 From Pseudomonas
Aeruginosa. Northeast Structural Genomics Consortium
Target Pat86, Ontario Centre For Structural Proteomics
Target Pa2412
Length = 72
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 164 RMQVEIDH---YPIWGEVVEIDTWVGASGKNGMRRDWL 198
+ QV ++H Y IW E EI A+GK+G+++D L
Sbjct: 11 QFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCL 48
>pdb|2PST|X Chain X, 1.8a Crystal Structure Of The Pa2412 Protein From
Pseudomonas Aeruginosa
Length = 74
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 164 RMQVEIDH---YPIWGEVVEIDTWVGASGKNGMRRDWL 198
+ QV ++H Y IW E EI A+GK+G+++D L
Sbjct: 13 QFQVVVNHEEQYSIWPEYKEIPQGWRAAGKSGLKKDCL 50
>pdb|2ZXQ|A Chain A, Crystal Structure Of Endo-Alpha-N-Acetylgalactosaminidase
From Bifidobacterium Longum (Engbf)
Length = 1376
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 63 VAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEV 114
VA+E + EVQI++N P+ Q+ + +G V Y Q+ VR+ E+
Sbjct: 22 VASETLKTKKMEVQIKKNFPSVLQYT-------MTDGKVMYGQSKDVRTVEI 66
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 116 PDKTATLESILNLFQETALNHVWMSGLLSNG--FGATHGMMRNNLI 159
PD A I F+ A+N V + L+ G FG THG +L+
Sbjct: 242 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTHGAGPADLV 287
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 116 PDKTATLESILNLFQETALNHVWMSGLLSNG--FGATHGMMRNNLI 159
PD A I F+ A+N V + L+ G FG THG +L+
Sbjct: 239 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTHGAGPADLV 284
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 116 PDKTATLESILNLFQETALNHVWMSGLLSNG--FGATHGMMRNNLI 159
PD A I F+ A+N V + L+ G FG THG +L+
Sbjct: 239 PDPMAAAVDIRETFRRMAMNDVETAALIVGGHTFGKTHGAGPADLV 284
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 38 GNSTRSTKVDLHSQTTGVASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRH 93
G + K+ L + G+ ST + ++ KE N V++ I TKK+ V + H
Sbjct: 26 GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 38 GNSTRSTKVDLHSQTTGVASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRH 93
G + K+ L + G+ ST + ++ KE N V++ I TKK+ V + H
Sbjct: 26 GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 38 GNSTRSTKVDLHSQTTGVASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRH 93
G + K+ L + G+ ST + ++ KE N V++ I TKK+ V + H
Sbjct: 26 GETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81
>pdb|1Q3I|A Chain A, Crystal Structure Of Na,K-Atpase N-Domain
Length = 214
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 15 IRCSAASNNHDPNKQKLNNISYSGNSTRSTKVDLHSQTTGVAS-TFVASVAAEKEGCRIN 73
+ C + D N K+ IS+ NST ++ +H + S V A E+ R +
Sbjct: 78 LSCGSVRKMRDRNP-KVAEISF--NSTNKYQLSIHEREDNPQSHVLVMKGAPERILDRCS 134
Query: 74 EVQIR-QNIPTKKQFVDPYRHGLIIEGGVGYR 104
+ ++ + IP K+ D +++ + GG+G R
Sbjct: 135 SILVQGKEIPLDKEMQDAFQNAYLELGGLGER 166
>pdb|3IX9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
pdb|3IX9|B Chain B, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
Length = 190
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 122 LESILNLFQETALNHVWMSGLLS-NGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVE 180
L + L F+ET LNH + G ++ +G G R LI + + +ID + +V
Sbjct: 47 LPAELQHFKETTLNHAILMGRVTFDGMGRRLLPKRETLI-LTRNPEEKIDGVATFHDVQS 105
Query: 181 IDTWVGASGKN 191
+ W A KN
Sbjct: 106 VLDWYSAQEKN 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,438,410
Number of Sequences: 62578
Number of extensions: 243052
Number of successful extensions: 800
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 18
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)