BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027484
(223 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SJE2|FATB_ARATH Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Arabidopsis thaliana GN=FATB PE=1 SV=1
Length = 412
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/150 (50%), Positives = 106/150 (70%), Gaps = 5/150 (3%)
Query: 63 VAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATL 122
+AAEK+ ++ R ++ VDP+ G I++ G+ +RQ +RSYE+G D++A++
Sbjct: 104 LAAEKQWMMLDWKPRRSDM-----LVDPFGIGRIVQDGLVFRQNFSIRSYEIGADRSASI 158
Query: 123 ESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182
E+++N QETALNHV +GLL +GFG+T M + NLIWVV+RMQV +D YP WG+VVE+D
Sbjct: 159 ETVMNHLQETALNHVKTAGLLGDGFGSTPEMFKKNLIWVVTRMQVVVDKYPTWGDVVEVD 218
Query: 183 TWVGASGKNGMRRDWLIRSQATGHIFARAT 212
TWV SGKNGMRRDWL+R TG RA+
Sbjct: 219 TWVSQSGKNGMRRDWLVRDCNTGETLTRAS 248
>sp|Q9SQI3|FATB_GOSHI Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1
Length = 413
Score = 163 bits (413), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 75/150 (50%), Positives = 105/150 (70%), Gaps = 5/150 (3%)
Query: 63 VAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATL 122
+AAEK+ ++ R ++ +DP+ G I++ G+ + Q +RSYE+G D+TA++
Sbjct: 99 LAAEKQWMMLDWKPRRPDM-----VIDPFGIGKIVQDGLVFSQNFSIRSYEIGADQTASI 153
Query: 123 ESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182
E+++N QETA+NH +GLL GFGAT M + NLIWVV+RMQV +D YP WG+VV++D
Sbjct: 154 ETLMNHLQETAINHCRSAGLLGEGFGATPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVD 213
Query: 183 TWVGASGKNGMRRDWLIRSQATGHIFARAT 212
TWV ASGKNGMRRDWL+ + TG I RAT
Sbjct: 214 TWVSASGKNGMRRDWLVSNSETGEILTRAT 243
>sp|Q39513|FATB_CUPHO Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1
Length = 415
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 5/158 (3%)
Query: 55 VASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEV 114
+A+ +AAEK+ ++ R ++ VDP+ G I++ G+ +RQ +RSYE+
Sbjct: 95 LAAITTVFLAAEKQWMMLDWKPKRPDM-----LVDPFGLGSIVQDGLVFRQNFSIRSYEI 149
Query: 115 GPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPI 174
G D+TA++E+++N QETALNHV ++GL ++GFG T M + +LIWVV++MQV ++ YP
Sbjct: 150 GADRTASIETVMNHLQETALNHVKIAGLSNDGFGRTPEMYKRDLIWVVAKMQVMVNRYPT 209
Query: 175 WGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARAT 212
WG+ VE++TWV SGKNGMRRDWLI TG I RA+
Sbjct: 210 WGDTVEVNTWVAKSGKNGMRRDWLISDCNTGEILTRAS 247
>sp|Q9SV64|FATA2_ARATH Oleoyl-acyl carrier protein thioesterase 2, chloroplastic
OS=Arabidopsis thaliana GN=FATA2 PE=2 SV=1
Length = 367
Score = 134 bits (338), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
Query: 89 DPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFG 148
D R G ++E G Y++ +VRSYEVG +KTAT+E+I NL QE A NHV G ++GF
Sbjct: 69 DRLRFGRLMEDGFSYKEKFIVRSYEVGINKTATIETIANLLQEVACNHVQNVGFSTDGFA 128
Query: 149 ATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIF 208
T M + +LIWV +RM +EI YP W +VVEI+TW + G+ G RRDW+++ ATG +
Sbjct: 129 TTLTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDCATGEVI 188
Query: 209 ARAT-RYIM 216
RAT +++M
Sbjct: 189 GRATSKWVM 197
>sp|Q42561|FATA1_ARATH Oleoyl-acyl carrier protein thioesterase 1, chloroplastic
OS=Arabidopsis thaliana GN=FATA PE=1 SV=1
Length = 362
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 85/131 (64%), Gaps = 1/131 (0%)
Query: 87 FVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNG 146
D R G + E G+ Y++ VVRSYEVG +KTAT+E+I NL QE NH G ++G
Sbjct: 68 LADQLRLGSLTEDGLSYKEKFVVRSYEVGSNKTATVETIANLLQEVGCNHAQSVGFSTDG 127
Query: 147 FGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGH 206
F T M + +LIWV +RM +EI YP WG+VVEI+TW + G+ G RRDW+++ TG
Sbjct: 128 FATTTTMRKLHLIWVTARMHIEIYKYPAWGDVVEIETWCQSEGRIGTRRDWILKDSVTGE 187
Query: 207 IFARAT-RYIM 216
+ RAT +++M
Sbjct: 188 VTGRATSKWVM 198
>sp|Q41635|FATB_UMBCA Lauroyl-acyl carrier protein thioesterase, chloroplastic
OS=Umbellularia californica GN=FATB1 PE=1 SV=1
Length = 382
Score = 130 bits (328), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 95/151 (62%), Gaps = 12/151 (7%)
Query: 64 AAEKEGCRINEVQIRQNIPTKKQFVDPY--RHGLIIEGGVGYRQTVVVRSYEVGPDKTAT 121
AAEK+ + E + + +P Q +D + HGL+ +R+T +RSYEVGPD++ +
Sbjct: 76 AAEKQWTNL-EWKPKPKLP---QLLDDHFGLHGLV------FRRTFAIRSYEVGPDRSTS 125
Query: 122 LESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEI 181
+ +++N QE LNH G+L +GFG T M + +L+WVV R V ++ YP WG+ VE+
Sbjct: 126 ILAVMNHMQEATLNHAKSVGILGDGFGTTLEMSKRDLMWVVRRTHVAVERYPTWGDTVEV 185
Query: 182 DTWVGASGKNGMRRDWLIRSQATGHIFARAT 212
+ W+GASG NGMRRD+L+R TG I R T
Sbjct: 186 ECWIGASGNNGMRRDFLVRDCKTGEILTRCT 216
>sp|Q39473|FATB_CINCA Myristoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1
Length = 382
Score = 130 bits (327), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 84/133 (63%), Gaps = 8/133 (6%)
Query: 82 PTKKQFVDPY--RHGLIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWM 139
P Q +D + HGL+ +R+T +RSYEVGPD++ ++ +++N QE ALNH
Sbjct: 90 PNPPQLLDDHFGPHGLV------FRRTFAIRSYEVGPDRSTSIVAVMNHLQEAALNHAKS 143
Query: 140 SGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLI 199
G+L +GFG T M + +LIWVV R V ++ YP WG+ VE++ WVGASG NG R D+L+
Sbjct: 144 VGILGDGFGTTLEMSKRDLIWVVKRTHVAVERYPAWGDTVEVECWVGASGNNGRRHDFLV 203
Query: 200 RSQATGHIFARAT 212
R TG I R T
Sbjct: 204 RDCKTGEILTRCT 216
>sp|Q42712|FATA_CORSA Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment)
OS=Coriandrum sativum GN=FATA PE=2 SV=1
Length = 369
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Query: 87 FVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNG 146
+ R G + E G+ Y++ +VR YEVG +KTAT+E+I NL QE NH G ++G
Sbjct: 66 LAEKLRLGSLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGGNHAQSVGFSTDG 125
Query: 147 FGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGH 206
F T M + +LIWV +RM +EI YP W +VVEI+TW + G+ G RRDW+I+ AT
Sbjct: 126 FATTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDFATDE 185
Query: 207 IFARAT-RYIM 216
+ RAT +++M
Sbjct: 186 VIGRATSKWVM 196
>sp|B0CC89|RSMA_ACAM1 Ribosomal RNA small subunit methyltransferase A OS=Acaryochloris
marina (strain MBIC 11017) GN=rsmA PE=3 SV=1
Length = 269
Score = 34.7 bits (78), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 129 FQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQV 167
+ + N W+S LL GF + M+RNNL +V R Q+
Sbjct: 196 YPQPVQNPQWLSTLLKVGFSSRRKMLRNNLKSLVDRDQL 234
>sp|Q9YEU2|KPYK_AERPE Pyruvate kinase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879
/ JCM 9820 / NBRC 100138 / K1) GN=pyk PE=1 SV=1
Length = 458
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 96 IIEGGV-GYRQTVVVRSYEVG-PDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGM 153
++EGGV G R+ VVVR E P +A L F + ++HV++S S A H
Sbjct: 138 VLEGGVLGPRKGVVVRGKEPDLPPLSAKDRRALEFFADKGVSHVYVSFARS----AEHVE 193
Query: 154 MRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213
++ + Q I + G +G+ R I + G I AR
Sbjct: 194 KVRTVVRRLGLRQARI--------------FAKIEGPSGVSRIGEIAEASDGVIIARGDL 239
Query: 214 YIMYALEEL 222
+ Y+LEEL
Sbjct: 240 GMHYSLEEL 248
>sp|Q67707|CAPSD_GVAIS Capsid protein OS=Grapevine virus A (isolate Is 151) GN=ORF4 PE=4
SV=1
Length = 198
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 59 FVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDK 118
++A V K+ EV I +KK +DP R +++ VG +T+ V E GP K
Sbjct: 45 YIALVGTSKKAIHYGEVDIVGPKASKKTGIDP-RGKMVVSELVGRMRTLSVAVSE-GPVK 102
Query: 119 TATLESILNLFQETALNHV 137
ATL + F + A + +
Sbjct: 103 GATLRQMCEPFAQNAYDFL 121
>sp|Q7ZYA5|PRKAA_XENLA Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog A OS=Xenopus laevis GN=prkra-a PE=2
SV=1
Length = 309
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 17/124 (13%)
Query: 65 AEKEGCRINEVQIRQN--IPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATL 122
A ++G R+ E + Q P K++F R +E G G + V R
Sbjct: 132 AVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKR---------VAA 182
Query: 123 ESILNLFQETALNHVWMSGLLSNGFGATHGMMRNN---LIWVVSRMQVEI---DHYPIWG 176
E +L F+ + +++ ++ L+ N G T MRN+ I ++ R + I D+ +
Sbjct: 183 EKLLTKFKTISTDNIPLNKLIGNKMGCTWDSMRNSSGEKISMLKRSPLSIPNTDYVKMLK 242
Query: 177 EVVE 180
+V E
Sbjct: 243 DVAE 246
>sp|Q91836|PRKAB_XENLA Interferon-inducible double stranded RNA-dependent protein kinase
activator A homolog B OS=Xenopus laevis GN=prkra-b PE=1
SV=1
Length = 298
Score = 30.8 bits (68), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 65 AEKEGCRINEVQIRQN--IPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATL 122
A ++G R+ E + Q P K++F R +E G G + V R
Sbjct: 121 AVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSGTSKQVAKR---------VAA 171
Query: 123 ESILNLFQETALNHVWMSGLLSNGFGATHGMMRNN 157
E +L F+ + +++ ++ L+ N G T MRN+
Sbjct: 172 EKLLTKFKTISTDNIPLNKLIGNKMGCTWDSMRNS 206
>sp|Q4FM37|ENO_PELUB Enolase OS=Pelagibacter ubique (strain HTCC1062) GN=eno PE=3 SV=1
Length = 418
Score = 30.8 bits (68), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 54 GVASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYE 113
G + S+AA+K +I V + + K + PY II GG + ++ +
Sbjct: 106 GANAILAVSMAAKKLSAKIKNVPLYKTFLVKNNYKLPYPLMNIINGGAHANNGLRIQEFM 165
Query: 114 VGPDK 118
+ PDK
Sbjct: 166 IRPDK 170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,151,848
Number of Sequences: 539616
Number of extensions: 3010862
Number of successful extensions: 7760
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7749
Number of HSP's gapped (non-prelim): 16
length of query: 223
length of database: 191,569,459
effective HSP length: 113
effective length of query: 110
effective length of database: 130,592,851
effective search space: 14365213610
effective search space used: 14365213610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)