Query 027484
Match_columns 223
No_of_seqs 173 out of 848
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 10:36:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02370 acyl-ACP thioesterase 100.0 4.9E-43 1.1E-47 328.7 18.4 166 50-222 94-259 (419)
2 PF01643 Acyl-ACP_TE: Acyl-ACP 100.0 1E-29 2.3E-34 224.4 16.0 116 100-221 1-122 (261)
3 PRK10800 acyl-CoA thioesterase 99.9 5E-23 1.1E-27 162.4 16.1 114 102-222 2-115 (130)
4 TIGR00051 acyl-CoA thioester h 99.9 2E-22 4.3E-27 153.7 14.6 109 106-221 1-109 (117)
5 TIGR02799 thio_ybgC tol-pal sy 99.9 1.3E-21 2.8E-26 152.1 14.5 111 103-221 1-112 (126)
6 cd00586 4HBT 4-hydroxybenzoyl- 99.8 1.2E-18 2.6E-23 128.3 14.9 110 103-219 1-110 (110)
7 COG0824 FcbC Predicted thioest 99.8 1.3E-18 2.9E-23 140.6 15.6 113 101-221 4-116 (137)
8 PRK07531 bifunctional 3-hydrox 99.8 1.5E-17 3.3E-22 159.1 16.0 112 102-221 345-456 (495)
9 COG3884 FatA Acyl-ACP thioeste 99.7 8E-17 1.7E-21 140.9 9.2 114 101-222 2-116 (250)
10 PF13279 4HBT_2: Thioesterase- 99.7 2.2E-15 4.7E-20 116.5 15.1 105 109-221 1-107 (121)
11 cd03440 hot_dog The hotdog fol 99.1 1.2E-08 2.5E-13 69.7 13.3 98 104-215 2-99 (100)
12 cd03442 BFIT_BACH Brown fat-in 99.0 2.5E-08 5.4E-13 76.2 15.1 106 101-221 6-116 (123)
13 PF01643 Acyl-ACP_TE: Acyl-ACP 98.8 2.4E-08 5.2E-13 88.4 9.8 97 99-215 162-259 (261)
14 cd03443 PaaI_thioesterase PaaI 98.6 1.7E-06 3.7E-11 65.1 14.0 101 101-216 12-112 (113)
15 PF03061 4HBT: Thioesterase su 98.6 1.3E-06 2.8E-11 61.7 11.8 79 117-209 1-79 (79)
16 PLN02370 acyl-ACP thioesterase 98.6 2.9E-07 6.3E-12 87.4 10.7 131 64-216 247-401 (419)
17 PF12590 Acyl-thio_N: Acyl-ATP 98.1 2.5E-07 5.4E-12 74.3 -1.9 34 49-89 96-129 (129)
18 TIGR00369 unchar_dom_1 unchara 97.6 0.0036 7.9E-08 48.3 13.7 99 103-216 18-116 (117)
19 COG3884 FatA Acyl-ACP thioeste 97.4 0.001 2.2E-08 59.1 8.7 88 102-215 152-239 (250)
20 PRK10694 acyl-CoA esterase; Pr 97.3 0.012 2.6E-07 47.6 13.9 104 103-221 12-123 (133)
21 TIGR02286 PaaD phenylacetic ac 97.3 0.018 3.8E-07 44.4 13.8 98 103-217 16-113 (114)
22 COG5496 Predicted thioesterase 96.8 0.068 1.5E-06 43.5 13.5 110 98-222 2-118 (130)
23 PRK11688 hypothetical protein; 96.2 0.22 4.7E-06 40.7 13.4 111 103-217 39-153 (154)
24 PRK10293 acyl-CoA esterase; Pr 96.2 0.34 7.3E-06 39.2 14.1 101 103-218 36-136 (136)
25 cd03449 R_hydratase (R)-hydrat 95.8 0.13 2.8E-06 39.4 9.6 55 159-214 69-125 (128)
26 KOG3328 HGG motif-containing t 94.8 0.63 1.4E-05 38.8 11.1 105 98-217 35-139 (148)
27 COG2050 PaaI HGG motif-contain 94.6 1.6 3.5E-05 34.8 13.1 105 103-221 36-140 (141)
28 PRK10254 thioesterase; Provisi 94.1 2.6 5.6E-05 34.2 15.1 101 103-218 36-136 (137)
29 COG4109 Predicted transcriptio 93.9 0.36 7.8E-06 45.8 8.8 102 95-213 325-426 (432)
30 cd00556 Thioesterase_II Thioes 93.9 0.52 1.1E-05 34.3 8.1 57 159-216 42-98 (99)
31 TIGR01750 fabZ beta-hydroxyacy 93.6 2.9 6.4E-05 32.9 13.7 86 120-216 53-139 (140)
32 cd03455 SAV4209 SAV4209 is a S 93.4 0.76 1.7E-05 35.6 8.8 54 160-214 67-121 (123)
33 COG1607 Acyl-CoA hydrolase [Li 93.4 4.2 9.1E-05 34.2 15.0 83 105-201 16-98 (157)
34 PF14539 DUF4442: Domain of un 93.1 3.6 7.9E-05 32.7 12.7 99 102-216 30-131 (132)
35 cd03441 R_hydratase_like (R)-h 93.1 1.1 2.4E-05 33.9 9.0 55 158-213 66-124 (127)
36 PRK00006 fabZ (3R)-hydroxymyri 92.5 4.5 9.9E-05 32.2 14.9 103 103-219 37-146 (147)
37 cd01288 FabZ FabZ is a 17kD be 92.4 3.9 8.4E-05 31.3 13.5 83 123-217 48-130 (131)
38 cd03447 FAS_MaoC FAS_MaoC, the 91.4 2.1 4.5E-05 33.9 9.0 52 162-214 70-122 (126)
39 PRK13691 (3R)-hydroxyacyl-ACP 90.9 2.6 5.7E-05 35.2 9.6 58 161-219 85-146 (166)
40 cd03454 YdeM YdeM is a Bacillu 90.7 1.4 3.1E-05 34.6 7.4 51 165-216 81-138 (140)
41 cd03446 MaoC_like MoaC_like 90.5 1.8 3.8E-05 33.9 7.8 51 165-216 83-139 (140)
42 cd03453 SAV4209_like SAV4209_l 89.9 2.6 5.7E-05 32.8 8.3 52 162-214 70-125 (127)
43 cd03451 FkbR2 FkbR2 is a Strep 88.1 3 6.4E-05 32.8 7.5 52 165-217 84-142 (146)
44 cd00493 FabA_FabZ FabA/Z, beta 88.0 9.9 0.00021 28.8 13.6 84 118-212 42-126 (131)
45 PRK13692 (3R)-hydroxyacyl-ACP 87.8 6.1 0.00013 32.6 9.5 55 164-219 88-146 (159)
46 PF13452 MaoC_dehydrat_N: N-te 87.5 2.1 4.6E-05 33.2 6.3 50 160-210 75-131 (132)
47 PLN02647 acyl-CoA thioesterase 86.7 19 0.00042 34.8 13.4 105 108-220 99-211 (437)
48 PRK08190 bifunctional enoyl-Co 85.8 6.7 0.00014 37.9 9.9 57 160-217 83-141 (466)
49 PRK04424 fatty acid biosynthes 84.2 12 0.00025 31.8 9.6 57 159-217 125-181 (185)
50 PLN02322 acyl-CoA thioesterase 83.8 24 0.00052 29.4 14.6 102 103-218 28-134 (154)
51 PLN02864 enoyl-CoA hydratase 83.1 8.2 0.00018 35.4 8.8 59 160-218 94-156 (310)
52 cd03452 MaoC_C MaoC_C The C-t 82.1 7.9 0.00017 30.9 7.4 52 165-217 81-138 (142)
53 PF13622 4HBT_3: Thioesterase- 80.0 13 0.00029 31.8 8.6 56 160-218 34-89 (255)
54 cd03445 Thioesterase_II_repeat 79.5 17 0.00037 27.2 8.0 53 161-215 40-92 (94)
55 PF03756 AfsA: A-factor biosyn 78.3 30 0.00065 27.0 12.1 89 116-217 39-132 (132)
56 COG2030 MaoC Acyl dehydratase 67.8 30 0.00065 28.3 7.4 56 161-218 95-155 (159)
57 TIGR00189 tesB acyl-CoA thioes 62.9 33 0.00071 30.0 7.2 53 162-216 46-98 (271)
58 cd03448 HDE_HSD HDE_HSD The R 59.0 59 0.0013 25.5 7.3 47 161-212 71-117 (122)
59 PRK13188 bifunctional UDP-3-O- 52.7 2.4E+02 0.0051 27.7 15.4 85 124-221 377-463 (464)
60 PLN02647 acyl-CoA thioesterase 51.7 2.4E+02 0.0052 27.5 14.2 104 103-220 291-403 (437)
61 cd03444 Thioesterase_II_repeat 50.9 1.1E+02 0.0023 23.2 7.6 54 160-214 48-101 (104)
62 PF07977 FabA: FabA-like domai 48.1 1.3E+02 0.0028 23.5 9.7 85 120-212 50-138 (138)
63 PF01575 MaoC_dehydratas: MaoC 43.2 42 0.0009 25.8 4.1 31 159-189 75-105 (122)
64 PLN02864 enoyl-CoA hydratase 41.9 1.5E+02 0.0032 27.2 8.1 49 161-214 254-302 (310)
65 PRK10526 acyl-CoA thioesterase 40.7 1.3E+02 0.0027 27.1 7.3 54 161-216 56-109 (286)
66 cd01289 FabA_like Domain of un 39.9 1.9E+02 0.0041 22.9 11.5 86 118-214 45-133 (138)
67 PF14765 PS-DH: Polyketide syn 32.9 3E+02 0.0064 23.6 8.3 58 156-214 225-284 (295)
68 TIGR00189 tesB acyl-CoA thioes 31.8 2.8E+02 0.006 24.1 8.0 53 161-214 215-267 (271)
69 PF01947 DUF98: Protein of unk 31.6 2.3E+02 0.005 23.1 6.9 28 188-217 43-70 (149)
70 COG3264 Small-conductance mech 31.1 38 0.00082 35.5 2.6 58 144-208 637-694 (835)
71 TIGR02447 yiiD_Cterm thioester 30.1 2.8E+02 0.0061 22.0 14.7 100 104-218 25-137 (138)
72 TIGR02278 PaaN-DH phenylacetic 28.2 1.7E+02 0.0038 29.6 6.8 51 165-216 604-660 (663)
73 PRK11563 bifunctional aldehyde 28.1 1.9E+02 0.0041 29.4 7.0 50 166-216 617-672 (675)
74 PF02551 Acyl_CoA_thio: Acyl-C 25.2 3.8E+02 0.0083 21.9 7.1 99 106-214 31-129 (131)
75 PLN02868 acyl-CoA thioesterase 23.7 2.8E+02 0.0062 26.0 6.9 53 161-215 182-234 (413)
76 smart00054 EFh EF-hand, calciu 22.6 91 0.002 15.9 2.1 21 111-131 8-28 (29)
77 PF13622 4HBT_3: Thioesterase- 22.0 4.9E+02 0.011 22.0 8.3 52 162-214 200-252 (255)
78 PRK01236 S-adenosylmethionine 21.4 1.5E+02 0.0034 24.0 4.0 33 104-136 6-38 (131)
79 PF09500 YiiD_Cterm: Putative 21.2 4.7E+02 0.01 21.5 8.4 91 113-218 39-143 (144)
80 KOG4366 Predicted thioesterase 20.6 31 0.00066 30.3 -0.2 105 107-220 55-162 (213)
No 1
>PLN02370 acyl-ACP thioesterase
Probab=100.00 E-value=4.9e-43 Score=328.74 Aligned_cols=166 Identities=47% Similarity=0.806 Sum_probs=157.6
Q ss_pred ccccceeeeeehhhhhhcccccchhhhhhccCCCCccccccccccccccCCceEEEEEEeeecCcCCCCCcCHHHHHHHH
Q 027484 50 SQTTGVASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVDPYRHGLIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLF 129 (223)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~y~~~~~Vr~~E~D~~G~v~~s~Ll~~l 129 (223)
||.++++||||. ||||||++++|++.| |++++|||++|+|++||++|+++|+|+|||||++|++++.+|+|||
T Consensus 94 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~y~~~f~Ir~yEvD~~g~lsl~~L~n~l 166 (419)
T PLN02370 94 SMLLAAITTIFL--AAEKQWMMLDWKPRR-----SDMLIDPFGIGRIVQDGLVFRQNFSIRSYEIGADRTASIETLMNHL 166 (419)
T ss_pred HHHHHHHHHHHH--hhhhhhhhhcccCCC-----CcccccccccCceeccCcEEEEEEEEeeEEECCCCCCCHHHHHHHH
Confidence 678889999998 999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEE
Q 027484 130 QETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFA 209 (223)
Q Consensus 130 QEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla 209 (223)
||+|.+|++++|+++.||+..++|.+.|++|||++++|+|+|+|+|||+|+|+||+.+++++++.|+|+|+|.++|++++
T Consensus 167 Qd~A~~Hs~~lGll~~Gfg~~~~m~~~gl~WVLtr~~I~~~R~P~~gD~V~V~Twv~~~~k~~~~Rdf~I~D~~~Ge~la 246 (419)
T PLN02370 167 QETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTRMQVLVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVRDCKTGETLT 246 (419)
T ss_pred HHHHHHHHHHhCccccccccHHHHHhCCceEEEEEEEEEeCcCCCCCCEEEEEEEEeeCCCCEEEEEEEEEECCCCeEEE
Confidence 99999999999888888865468999999999999999999999999999999999999999999999999844899999
Q ss_pred EEEEEEEEEeccc
Q 027484 210 RATRYIMYALEEL 222 (223)
Q Consensus 210 ~A~S~WVlVD~e~ 222 (223)
+|+|.||+||.+.
T Consensus 247 ~A~SvWV~mD~~T 259 (419)
T PLN02370 247 RASSVWVMMNKLT 259 (419)
T ss_pred EEEEEEEEEECCC
Confidence 9999999999863
No 2
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=99.97 E-value=1e-29 Score=224.35 Aligned_cols=116 Identities=37% Similarity=0.619 Sum_probs=96.7
Q ss_pred CceEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchh------hhhCCeEEEEEEeEEEEeecC
Q 027484 100 GVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHG------MMRNNLIWVVSRMQVEIDHYP 173 (223)
Q Consensus 100 g~~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~------l~~~g~aWVL~r~~Iei~r~P 173 (223)
|++|+++++|+++|||.+|++++++|++||||+|..|++++ |+|. +. |.+.|++|||+|++|+|+|+|
T Consensus 1 g~~y~~~~~v~~~e~d~~~~l~l~~l~~~~qe~a~~h~~~l-----G~~~-~~~~~~~~l~~~~~~Wvl~r~~i~i~r~P 74 (261)
T PF01643_consen 1 GLVYEKEFTVRYYECDPNGRLKLSALLNYFQEAATEHAESL-----GFGM-DYFGSTPELKKQGLAWVLSRYQIEIHRYP 74 (261)
T ss_dssp ---EEEEEE--GGGB-TTSBB-HHHHHHHHHHHHHHHHHHT-----T-SH-HH------HHCTTEEEEEEEEEEEESS--
T ss_pred CceEEEEEEEcceeeCCCCCCCHHHHHHHHHHHHHHHHHHh-----CCCc-ccchhhhhHhhcCcEEEEEEEEEEEEecC
Confidence 67899999999999999999999999999999999999985 6665 45 899999999999999999999
Q ss_pred CCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEEecc
Q 027484 174 IWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYALEE 221 (223)
Q Consensus 174 ~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD~e 221 (223)
+|||+|+|+||+.+.+++++.|+|+|+|.++|++|++|+|.|++||++
T Consensus 75 ~~~e~i~i~Tw~~~~~~~~~~R~f~i~d~~~G~~l~~a~s~WvliD~~ 122 (261)
T PF01643_consen 75 RWGEKITIETWPSGFKRFFAYRDFEIYDAEDGELLARATSIWVLIDLE 122 (261)
T ss_dssp BTT-EEEEEEEEEEE-SSEEEEEEEEE--TTS-EEEEEEEEEEEEETT
T ss_pred CCCCEEEEEEEeccCCCcEEEEEEEEEECCCCcEEEEEEEEEEEEEhh
Confidence 999999999999999999999999999647899999999999999986
No 3
>PRK10800 acyl-CoA thioesterase YbgC; Provisional
Probab=99.91 E-value=5e-23 Score=162.45 Aligned_cols=114 Identities=14% Similarity=0.166 Sum_probs=104.8
Q ss_pred eEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEE
Q 027484 102 GYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEI 181 (223)
Q Consensus 102 ~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I 181 (223)
+|..+++|+++|||++||++++.|++|||+++..|+..+ |++. ..+.+.|.+|++++++++|.+++++||+|+|
T Consensus 2 ~f~~~~~Vr~~d~D~~Ghv~~~~y~~~~e~a~~~~~~~~-----g~~~-~~~~~~~~~~~v~~~~i~y~~~~~~~d~i~v 75 (130)
T PRK10800 2 LFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHH-----HFSQ-QALLAERVAFVVRKMTVEYYAPARLDDMLEV 75 (130)
T ss_pred ceEEEEEEeehhcCCCCeEehHHHHHHHHHHHHHHHHHc-----CCCH-HHHHhCCCEEEEEEEEEEEcCcccCCCEEEE
Confidence 478899999999999999999999999999999999873 6665 4677789999999999999999999999999
Q ss_pred EEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEEeccc
Q 027484 182 DTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYALEEL 222 (223)
Q Consensus 182 ~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD~e~ 222 (223)
+||+.+.++..+...|+|++ .+|+++++|.+.||++|.+.
T Consensus 76 ~t~v~~~~~~s~~~~~~i~~-~~g~~~a~~~~~~v~~d~~~ 115 (130)
T PRK10800 76 QSEITSMRGTSLTFTQRIVN-AEGTLLNEAEVLIVCVDPLK 115 (130)
T ss_pred EEEEEeeCcEEEEEEEEEEc-CCCeEEEEEEEEEEEEECCC
Confidence 99999999998888899996 68999999999999999763
No 4
>TIGR00051 acyl-CoA thioester hydrolase, YbgC/YbaW family. This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon.
Probab=99.89 E-value=2e-22 Score=153.71 Aligned_cols=109 Identities=14% Similarity=0.108 Sum_probs=100.1
Q ss_pred EEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEEEe
Q 027484 106 TVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWV 185 (223)
Q Consensus 106 ~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~TWv 185 (223)
+++|+++|||++||+++..|++|||+++..|++.+ |++. .++.+.|.+|++.+++++|.++|++||+|+|+||+
T Consensus 1 ~~~V~~~d~D~~G~v~~~~y~~~~~~a~~~~~~~~-----g~~~-~~~~~~~~~~~v~~~~i~y~~~~~~gd~v~v~~~~ 74 (117)
T TIGR00051 1 PVRVYYEDTDAQGIVYHANYLRYCERARTEFLRSL-----GFPQ-SVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQI 74 (117)
T ss_pred CEEEEEeccCCCcEEEehHHHHHHHHHHHHHHHHc-----CCCH-HHHHhCCCEEEEEEEEEEECCcccCCCEEEEEEEE
Confidence 36899999999999999999999999999999874 6665 57778899999999999999999999999999999
Q ss_pred cccCCceEEEEEEEEECCCCcEEEEEEEEEEEEecc
Q 027484 186 GASGKNGMRRDWLIRSQATGHIFARATRYIMYALEE 221 (223)
Q Consensus 186 ~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD~e 221 (223)
...++.++.+.|+|++ .+|++++.+.+.||++|.+
T Consensus 75 ~~~~~~s~~~~~~i~~-~~~~~~~~~~~~~v~~d~~ 109 (117)
T TIGR00051 75 EELNGFSFVFSQEIFN-EDEALLKAATVIVVCVDPK 109 (117)
T ss_pred EecCcEEEEEEEEEEe-CCCcEEEeeEEEEEEEECC
Confidence 9999999999999997 6788888888889999975
No 5
>TIGR02799 thio_ybgC tol-pal system-associated acyl-CoA thioesterase. The tol-pal system consists of five critical genes. Inner membrane proteins TolQ and TolR convert protomotive force to energy that is transduced through TolA to an outer membrane complex of TolB and Pal. The system is known to be required to maintain outer membrane integrity. In a system with several homologous parts, ExbB and ExbD transduces energy through TonB to a variety of outer membrane proteins, many of which are siderophore receptors. The tol-pal system therefore may also be involved in transport. This family consists of a protein nearly always found in operons with the genes of the tol-pal system. The significance of this thioesterase to the tol-pal system is unclear, but either of two observations may be relevant. First, Pal, or peptidoglycan-associated lipoprotein, has a conserved N-terminal cleavage and acylation that makes it a lipoprotein. Second, the tol-pal system is implicated not only in the import o
Probab=99.88 E-value=1.3e-21 Score=152.10 Aligned_cols=111 Identities=13% Similarity=0.171 Sum_probs=101.8
Q ss_pred EEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhh-hCCeEEEEEEeEEEEeecCCCCCEEEE
Q 027484 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMM-RNNLIWVVSRMQVEIDHYPIWGEVVEI 181 (223)
Q Consensus 103 y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~-~~g~aWVL~r~~Iei~r~P~~gD~I~I 181 (223)
|+.+++|+++|||++||++++.|++|||+++..++.++ |++. .++. +.|..||+.+++++|.+++++||+|+|
T Consensus 1 f~~~~~vr~~d~D~~Ghv~~~~y~~~~~~a~~~~~~~~-----g~~~-~~~~~~~~~~~vv~~~~i~y~~~~~~gd~v~v 74 (126)
T TIGR02799 1 FRWPIRVYYEDTDAGGVVYHANYLKFMERARTEWLRAL-----GFEQ-SALLEETGLVFVVRSMELDYLKPARLDDLLTV 74 (126)
T ss_pred CcceEEEEEeccCCCceEEechHHHHHHHHHHHHHHHc-----CCCH-HHHhhcCCcEEEEEEEEEEEcCcccCCCEEEE
Confidence 46789999999999999999999999999999999874 6665 4564 569999999999999999999999999
Q ss_pred EEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEEecc
Q 027484 182 DTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYALEE 221 (223)
Q Consensus 182 ~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD~e 221 (223)
+||+.+.++.++.+.|+|++ +|++++.|.+.||++|.+
T Consensus 75 ~~~v~~~~~~~~~~~~~i~~--~g~~~a~~~~~~v~vd~~ 112 (126)
T TIGR02799 75 TTRVVELKGASLVFAQEVRR--GDTLLCEATVEVACVDAS 112 (126)
T ss_pred EEEEEecCceEEEEEEEEEe--CCEEEEEEEEEEEEEECC
Confidence 99999999999999999994 799999999999999974
No 6
>cd00586 4HBT 4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).
Probab=99.81 E-value=1.2e-18 Score=128.26 Aligned_cols=110 Identities=16% Similarity=0.200 Sum_probs=101.4
Q ss_pred EEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEE
Q 027484 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182 (223)
Q Consensus 103 y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~ 182 (223)
|+.++.|+++|+|.+|++++..|++|+++++..|+... |++. ..+.+.+..|++.+.+++|.+++.+||+|+|+
T Consensus 1 ~~~~~~v~~~d~d~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~v~ 74 (110)
T cd00586 1 FTLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLREL-----GLGY-DELEEQGLGLVVVELEIDYLRPLRLGDRLTVE 74 (110)
T ss_pred CcEEEEEEEhhcCCCCEEchhHHHHHHHHHHHHHHHHc-----CCCH-HHHHhCCceEEEEEeEeeEcCccCCCCEEEEE
Confidence 46789999999999999999999999999999999884 5554 45678899999999999999999999999999
Q ss_pred EEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 027484 183 TWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYAL 219 (223)
Q Consensus 183 TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD 219 (223)
+|+.+.++..+.+.+++++ ++|+++++|.+.|+++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-~~g~~~a~~~~~~~~~d 110 (110)
T cd00586 75 TRVLRLGRKSFTFEQEIFR-EDGELLATAETVLVCVD 110 (110)
T ss_pred EEEEecCcEEEEEEEEEEC-CCCeEEEEEEEEEEEeC
Confidence 9999999999999999996 57999999999999987
No 7
>COG0824 FcbC Predicted thioesterase [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=140.62 Aligned_cols=113 Identities=14% Similarity=0.217 Sum_probs=105.2
Q ss_pred ceEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEE
Q 027484 101 VGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVE 180 (223)
Q Consensus 101 ~~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~ 180 (223)
..|+.+++|+++|||++||+++..|+.|||+++.+..+++ |++. .++.+.|+.|++.+.+++|.++.++||.++
T Consensus 4 ~~~~~~~~V~~~d~D~~GhV~~a~Yl~~fE~ar~~~l~~~-----g~~~-~~~~~~~~~~~v~~~~i~y~~p~~~~d~l~ 77 (137)
T COG0824 4 FPFSTPIRVRYEDTDAMGHVNNANYLVFFEEARTEFLRAL-----GFDY-ADLEEGGIAFVVVEAEIDYLRPARLGDVLT 77 (137)
T ss_pred cceEEEEEEEhhhcCcccEEecchHHHHHHHHHHHHHHHc-----CCCH-HHHhhCCcEEEEEEEEeEECCCccCCCEEE
Confidence 4688999999999999999999999999999999999873 7777 678888999999999999999999999999
Q ss_pred EEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEEecc
Q 027484 181 IDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYALEE 221 (223)
Q Consensus 181 I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD~e 221 (223)
|+||+...++.++...|+|++ .+ +++++|++.+|++|.+
T Consensus 78 v~~~v~~~~~~s~~~~~~i~~-~~-~l~a~~~~~~V~v~~~ 116 (137)
T COG0824 78 VRTRVEELGGKSLTLGYEIVN-ED-ELLATGETTLVCVDLK 116 (137)
T ss_pred EEEEEEeecCeEEEEEEEEEe-CC-EEEEEEEEEEEEEECC
Confidence 999999999999999999996 44 9999999999999965
No 8
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.76 E-value=1.5e-17 Score=159.10 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=102.9
Q ss_pred eEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEE
Q 027484 102 GYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEI 181 (223)
Q Consensus 102 ~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I 181 (223)
++..+++|++++||.+||+++..|++|||+++.+|+..+ |++. . ....+..|++++++|+|.+++++||+|+|
T Consensus 345 ~~~~~~~V~~~~~D~~Ghvnn~~Yl~~~e~Ar~~~~~~~-----G~~~-~-~~~~~~~~vvv~~~i~y~rp~~~gD~v~I 417 (495)
T PRK07531 345 LRLVETKVPPAWVDYNGHMTEHRYLQVFGDTTDALLRLI-----GVDA-A-YVAAGHSYYTVETHIRHLGEAKAGQALHV 417 (495)
T ss_pred eEEEeEEECHHHcCCCCeEcHHHHHHHHHHHHHHHHHHc-----CCCH-H-HHhcCCcEEEEEEEEEEcccCCCCCEEEE
Confidence 557899999999999999999999999999999999874 6664 3 44558999999999999999999999999
Q ss_pred EEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEEecc
Q 027484 182 DTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYALEE 221 (223)
Q Consensus 182 ~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD~e 221 (223)
+||+...++.++.+.|+|++ .+|+++++|.+.||++|.+
T Consensus 418 ~t~v~~~~~~s~~~~~~i~~-~~g~l~A~g~~~~v~vD~~ 456 (495)
T PRK07531 418 ETQLLSGDEKRLHLFHTLYD-AGGELIATAEHMLLHVDLK 456 (495)
T ss_pred EEEEEecCCcEEEEEEEEEC-CCCcEEEEEEEEEEEEECC
Confidence 99999999999999999996 7899999999999999976
No 9
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=99.69 E-value=8e-17 Score=140.92 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=103.5
Q ss_pred ceEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCC-CCcchhhhhCCeEEEEEEeEEEEeecCCCCCEE
Q 027484 101 VGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNG-FGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVV 179 (223)
Q Consensus 101 ~~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G-~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I 179 (223)
..|++++.|.+|+.|+.|++..+..|.+..+++..|...+ | ++. ..+.+.++.|+|.|+.|++.|+|.++|+|
T Consensus 2 ~~~k~~~~vP~~~~d~~g~i~~~~~l~l~~~i~~~Qsi~l-----g~~~~-~~lee~~l~WiV~~~~i~~ir~pef~e~i 75 (250)
T COG3884 2 SVDKQNMPVPFYWPDAVGDIDITSRLRLDLQIRGIQSIGL-----GQLDV-AGLEEYHLLWIVRRTEIDVIRPPEFGEMI 75 (250)
T ss_pred cchhhcCCCccchhhhcCCcchhhhhhhhhhhcceeeccc-----chhhh-hhHhhcCceEEEEEEEEEEeeccccCCcc
Confidence 4577889999999999999999999999999999988653 4 333 56888999999999999999999999999
Q ss_pred EEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEEeccc
Q 027484 180 EIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYALEEL 222 (223)
Q Consensus 180 ~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD~e~ 222 (223)
+|+||+.++++++++|+|++.+ .|+.+++..+.|++||.+.
T Consensus 76 ti~t~~~s~~~ffcyrrf~~~~--~gg~Lie~~a~wilmn~dT 116 (250)
T COG3884 76 TIETWCSSISNFFCYRRFRLDG--RGGGLIEIEAFWILMNRDT 116 (250)
T ss_pred eEEEeeccccceEEEEEEEEec--CCCcEEEEEEEEEEEcccc
Confidence 9999999999999999999995 7889999999999999874
No 10
>PF13279 4HBT_2: Thioesterase-like superfamily; PDB: 2W3X_E 3CK1_A 2GF6_C 2NUJ_A 2HLJ_A 2XFL_B 2XEM_B 2OIW_B 2HX5_A 2FUJ_A ....
Probab=99.68 E-value=2.2e-15 Score=116.48 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=89.1
Q ss_pred eeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEEEeccc
Q 027484 109 VRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGAS 188 (223)
Q Consensus 109 Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~ 188 (223)
|+++||| +||++++.|++||++++.+...+. |+ . ..+...|+.+++.+.+++|.++.+++|+++|++++.+.
T Consensus 1 Vr~~D~D-~ghv~n~~Y~~~~e~ar~~~~~~~-----g~-~-~~~~~~~~~~~v~~~~i~y~~~~~~~d~~~v~~~~~~~ 72 (121)
T PF13279_consen 1 VRWSDTD-NGHVNNARYLRYFEEAREEFLEEL-----GL-Y-DELQGQGIGFVVAESEIDYLRPLRFGDRLEVETRVEEI 72 (121)
T ss_dssp --GGGB--TSSB-HHHHHHHHHHHHHHHHHHH-----TS-C-HHHTTTTEEEEEEEEEEEE-S--BTTSEEEEEEEEEEE
T ss_pred CCHHHcc-CCeEcHHHHHHHHHHHHHHHHHhc-----ch-h-hHHHhcCceEEEEEEEEEEcccccCCCEEEEEEEEEEE
Confidence 6899999 999999999999999999999874 55 4 57888999999999999999999999999999999999
Q ss_pred CCceEEEEEEEEECCCCcE--EEEEEEEEEEEecc
Q 027484 189 GKNGMRRDWLIRSQATGHI--FARATRYIMYALEE 221 (223)
Q Consensus 189 ~k~~~~R~f~I~d~~~Gev--la~A~S~WVlVD~e 221 (223)
++.++...|+|++..+|+. +++|.+.+|++|.+
T Consensus 73 ~~~s~~~~~~i~~~~~g~~~~~a~~~~~~v~~d~~ 107 (121)
T PF13279_consen 73 GGKSFRFEQEIFRPADGKGELAATGRTVMVFVDYK 107 (121)
T ss_dssp ESSEEEEEEEEEECSTTEEEEEEEEEEEEEEEETT
T ss_pred CCcEEEEEEEEEEcCCCceEEEEEEEEEEEEEeCC
Confidence 9999999999997335655 99999999999976
No 11
>cd03440 hot_dog The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.
Probab=99.06 E-value=1.2e-08 Score=69.67 Aligned_cols=98 Identities=17% Similarity=0.125 Sum_probs=87.0
Q ss_pred EEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEE
Q 027484 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDT 183 (223)
Q Consensus 104 ~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~T 183 (223)
...++++.+++|.+++++...++.++++++..+.... + . .+..|++.++.+++.+++..||.|.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~----~~~~~~~~~~~~~~~~~~~~g~~v~~~~ 68 (100)
T cd03440 2 VLRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARL-----G----G----RGLGAVTLSLDVRFLRPVRPGDTLTVEA 68 (100)
T ss_pred EEEEEeCHHHcCcCCccchHHHHHHHHHHHHHHHHHh-----c----c----CCCeEEEEEEEeEEecCCCCCCEEEEEE
Confidence 3578999999999999999999999999999998642 1 1 5678999999999999999999999999
Q ss_pred EecccCCceEEEEEEEEECCCCcEEEEEEEEE
Q 027484 184 WVGASGKNGMRRDWLIRSQATGHIFARATRYI 215 (223)
Q Consensus 184 Wv~~~~k~~~~R~f~I~d~~~Gevla~A~S~W 215 (223)
|+...++..+.....+.+ .+|++++.+...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 99 (100)
T cd03440 69 EVVRVGRSSVTVEVEVRN-EDGKLVATATATF 99 (100)
T ss_pred EEEeccccEEEEEEEEEC-CCCCEEEEEEEEe
Confidence 999998888999999996 5799999998776
No 12
>cd03442 BFIT_BACH Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, and brown adipose tissues. The archeal and eukaryotic members of this family have two tandem copies of the conserved hot dog fold, while most bacterial members have only one copy.
Probab=99.01 E-value=2.5e-08 Score=76.17 Aligned_cols=106 Identities=14% Similarity=0.089 Sum_probs=87.1
Q ss_pred ceEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEe-EEEEeecCCCCCEE
Q 027484 101 VGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRM-QVEIDHYPIWGEVV 179 (223)
Q Consensus 101 ~~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~-~Iei~r~P~~gD~I 179 (223)
-.++..+.|++.++|+.|+++...|+.|+.+++...+... ... .++.... +++|.++..+||.|
T Consensus 6 ~~~~~~~~v~~~~~d~~g~v~~g~~~~~~d~a~~~~~~~~-------------~~~--~~~~~~~~~~~f~~p~~~gd~l 70 (123)
T cd03442 6 TELSTRELVLPEDTNHHGTIFGGWLLEWMDELAGIAAYRH-------------AGG--RVVTASVDRIDFLKPVRVGDVV 70 (123)
T ss_pred cceEEEEEeCCcccCcCCcEeHHHHHHHHHHHHHHHHHHH-------------hCC--cEEEEEECceEEcCccccCcEE
Confidence 3578899999999999999999999999999887765321 011 2334445 79999999999999
Q ss_pred EEEEEecccCCceEEEEEEEEECC----CCcEEEEEEEEEEEEecc
Q 027484 180 EIDTWVGASGKNGMRRDWLIRSQA----TGHIFARATRYIMYALEE 221 (223)
Q Consensus 180 ~I~TWv~~~~k~~~~R~f~I~d~~----~Gevla~A~S~WVlVD~e 221 (223)
.++.|+...++..+...+++++.. +++++++|..++|++|.+
T Consensus 71 ~i~~~v~~~g~~~~~~~~~i~~~~~~~~~~~~~a~~~~~~v~~~~~ 116 (123)
T cd03442 71 ELSARVVYTGRTSMEVGVEVEAEDPLTGERRLVTSAYFTFVALDED 116 (123)
T ss_pred EEEEEEEEecCCeEEEEEEEEEecCCCCcEEEEEEEEEEEEEECCC
Confidence 999999999999999999999732 247999999999999843
No 13
>PF01643 Acyl-ACP_TE: Acyl-ACP thioesterase; InterPro: IPR002864 This entry represents various acyl-acyl carrier protein (ACP) thioesterases (TE) which terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid []. These proteins contain a duplication of two 4HBT-like domains.; GO: 0016790 thiolester hydrolase activity, 0006633 fatty acid biosynthetic process; PDB: 2ESS_A 2OWN_A.
Probab=98.82 E-value=2.4e-08 Score=88.40 Aligned_cols=97 Identities=13% Similarity=0.182 Sum_probs=68.9
Q ss_pred CCceEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCE
Q 027484 99 GGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEV 178 (223)
Q Consensus 99 ~g~~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~ 178 (223)
....+..+++|+++|+|.||||||..|++|+.|+--...- +. -.+.++.|.|.+...+||+
T Consensus 162 ~~~~~~~~~~vr~sDiD~N~HVNN~~Yl~w~~d~lp~~~~----------------~~---~~~~~i~I~y~~E~~~gd~ 222 (261)
T PF01643_consen 162 EEPEFEKEFTVRYSDIDMNGHVNNARYLDWALDALPEEFL----------------EK---YQIKSIDINYKKEIRYGDT 222 (261)
T ss_dssp -TTSECEEEE--GGGEETTTCE-HHHHHHHHHCCS-HHHH----------------CC---EEEEEEEEEE-S--BTT-E
T ss_pred hhhheeecccccHHHCCCCCCcCHHHHHHHHHHhCcchhh----------------cc---CCcEEEEEEEccccCCCCE
Confidence 4567889999999999999999999999999776544321 11 4578999999999999999
Q ss_pred EEEEEEeccc-CCceEEEEEEEEECCCCcEEEEEEEEE
Q 027484 179 VEIDTWVGAS-GKNGMRRDWLIRSQATGHIFARATRYI 215 (223)
Q Consensus 179 I~I~TWv~~~-~k~~~~R~f~I~d~~~Gevla~A~S~W 215 (223)
|.+.+-+... ..-...-.+.|.+ .+|+++++|.+.|
T Consensus 223 i~~~~~~~~~~~~~~~~~~h~i~~-~~g~~~~~~~~~W 259 (261)
T PF01643_consen 223 ITSYTEVEKDEEEDGLSTLHEIRN-EDGEEVARARTEW 259 (261)
T ss_dssp EEEEEEEEEECCTTEEEEEEEEEC-T-TCEEEEEEEEE
T ss_pred EEEEEEEcccccCCceEEEEEEEc-CCCceEEEEEEEE
Confidence 9999986433 2233445577886 5699999999999
No 14
>cd03443 PaaI_thioesterase PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).
Probab=98.64 E-value=1.7e-06 Score=65.13 Aligned_cols=101 Identities=12% Similarity=0.010 Sum_probs=86.4
Q ss_pred ceEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEE
Q 027484 101 VGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVE 180 (223)
Q Consensus 101 ~~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~ 180 (223)
...+..+.+...++|..|.++-..++.|+..++....... ...+...++.+++++|.+++.. +.++
T Consensus 12 ~~~~~~~~~~~~~~n~~g~vhgg~l~~l~d~a~~~~~~~~-------------~~~~~~~~~~~~~i~f~~p~~~-~~v~ 77 (113)
T cd03443 12 GRVVLRLPVRPRHLNPGGIVHGGAIATLADTAGGLAALSA-------------LPPGALAVTVDLNVNYLRPARG-GDLT 77 (113)
T ss_pred CeEEEEeeCcHhhcCCCCeEeHHHHHHHHHHHHHHHHhhc-------------cCCCCceEEEEEEEeEEcCCCC-CeEE
Confidence 3567889999999999999999999999988888665431 1134567888999999999999 9999
Q ss_pred EEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 027484 181 IDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIM 216 (223)
Q Consensus 181 I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WV 216 (223)
+++|+...++....-+.++++ ++|+++++|+..|+
T Consensus 78 ~~~~v~~~g~~~~~~~~~~~~-~~~~~~a~a~~~~~ 112 (113)
T cd03443 78 ARARVVKLGRRLAVVEVEVTD-EDGKLVATARGTFA 112 (113)
T ss_pred EEEEEEecCceEEEEEEEEEC-CCCCEEEEEEEEEe
Confidence 999999998888888899996 67999999999986
No 15
>PF03061 4HBT: Thioesterase superfamily; InterPro: IPR006683 This family contains a wide variety of enzymes, principally thioesterases. This family includes 4HBT (3.1.2.23 from EC) which catalyses the final step in the biosynthesis of 4-hydroxybenzoate from 4-chlorobenzoate in the soil dwelling microbe Pseudomonas CBS-3. This family includes various cytosolic long-chain acyl-CoA thioester hydrolases. Long-chain acyl-CoA hydrolases hydrolyse palmitoyl-CoA to CoA and palmitate, they also catalyse the hydrolysis of other long chain fatty acyl-CoA thioesters. ; PDB: 3F5O_F 2F0X_D 2H4U_C 2PRX_A 2OV9_D 1YLI_B 3BJK_F 1IXL_A 3DKZ_B 2EIS_B ....
Probab=98.61 E-value=1.3e-06 Score=61.72 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=69.0
Q ss_pred CCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEE
Q 027484 117 DKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRD 196 (223)
Q Consensus 117 ~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~ 196 (223)
+|+++...|+.||++++...+... |. .+...++...+++|.+|.+.||.|++++|+...++..+.-.
T Consensus 1 ~G~v~~g~~~~~~d~a~~~~~~~~-----~~--------~~~~~~~~~~~i~f~~p~~~gd~l~~~~~v~~~g~~~~~~~ 67 (79)
T PF03061_consen 1 NGIVHGGVYLSLFDEAASAALRSH-----GG--------DGRGVVTVELSIDFLRPVRPGDTLRVEARVVRVGRKSFTVE 67 (79)
T ss_dssp TSSBCHHHHHHHHHHHHHHHHHHH-----HS--------STEEEEEEEEEEEESS-BBTTSEEEEEEEEEEEESSEEEEE
T ss_pred CCEEhHHHHHHHHHHHHHHHHHHh-----cc--------CCcceEEEEEEEEEccccCCCeEEEEEEEEEEECCEEEEEE
Confidence 589999999999999999998763 11 16789999999999999999999999999999999999999
Q ss_pred EEEEECCCCcEEE
Q 027484 197 WLIRSQATGHIFA 209 (223)
Q Consensus 197 f~I~d~~~Gevla 209 (223)
+++++ +++++++
T Consensus 68 ~~v~~-~~~~~~~ 79 (79)
T PF03061_consen 68 VEVYS-EDGRLCA 79 (79)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEE-CCCcEEC
Confidence 99998 7887765
No 16
>PLN02370 acyl-ACP thioesterase
Probab=98.60 E-value=2.9e-07 Score=87.45 Aligned_cols=131 Identities=16% Similarity=0.160 Sum_probs=85.8
Q ss_pred hhhcccccchhhhhhcc-CCCC-ccccccc----------cccccccCCc----eEEEEEEeeecCcCCCCCcCHHHHHH
Q 027484 64 AAEKEGCRINEVQIRQN-IPTK-KQFVDPY----------RHGLIIEGGV----GYRQTVVVRSYEVGPDKTATLESILN 127 (223)
Q Consensus 64 ~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~----------~~~~~~e~g~----~y~~~~~Vr~~E~D~~G~v~~s~Ll~ 127 (223)
-|++.|..+|-+.+|-. +|.. .+.++|| +..+|+.-.. ..+..++||++|+|.||||||..|+.
T Consensus 247 ~A~SvWV~mD~~TRRpvRIP~Evr~~i~~y~~~~~~~i~~~~~kl~~l~~~~~~~~~~~~~VRysDLD~NgHVNNvkYi~ 326 (419)
T PLN02370 247 RASSVWVMMNKLTRRLSKIPEEVRGEIEPYFLNSDPVVNEDSRKLPKLDDKTADYIRKGLTPRWSDLDVNQHVNNVKYIG 326 (419)
T ss_pred EEEEEEEEEECCCCcccCCCHHHHHhhhhcccccccccccccccCCccccccccceeeeeeecHHHCcccCccccHHHHH
Confidence 34557888886666644 4431 1113332 2333332111 23456999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEEEeccc--------CCceEEEEEEE
Q 027484 128 LFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGAS--------GKNGMRRDWLI 199 (223)
Q Consensus 128 ~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~--------~k~~~~R~f~I 199 (223)
|++|+.-... + +. --+.++.|+|.+...+||.|.+.|-..+. +...+.. .+
T Consensus 327 Wild~lP~e~---------------l-~~---~~l~~i~I~Y~kE~~~gd~V~s~~~~~~~~~~~~~~~~~~~~~h--~~ 385 (419)
T PLN02370 327 WILESAPPPI---------------M-ES---HELAAITLEYRRECGRDSVLQSLTAVSGTGIGNLGTAGDVECQH--LL 385 (419)
T ss_pred HHHhhCchhh---------------h-hc---ceEEEEEEEEcccCCCCCEEEEEEeecccccccccCCCcceEEE--EE
Confidence 9988654322 1 11 24778999999999999999988765311 1112222 33
Q ss_pred EECCCCcEEEEEEEEEE
Q 027484 200 RSQATGHIFARATRYIM 216 (223)
Q Consensus 200 ~d~~~Gevla~A~S~WV 216 (223)
. .++|++++++.+.|-
T Consensus 386 ~-~~dG~e~a~a~t~Wr 401 (419)
T PLN02370 386 R-LEDGAEIVRGRTEWR 401 (419)
T ss_pred E-cCCCeEEEEEEEEEE
Confidence 3 378999999999996
No 17
>PF12590 Acyl-thio_N: Acyl-ATP thioesterase; InterPro: IPR021113 This entry represents the N-terminal domain of acyl-ATP thioesterases from bacteria and eukaryotes. These proteins are typically between 120 and 131 amino acids in length. The plant acyl-acyl carrier protein (ACP) thioesterases (TEs) play an essential role in chain termination during de novo fatty acid synthesis [].; GO: 0016790 thiolester hydrolase activity
Probab=98.12 E-value=2.5e-07 Score=74.33 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=30.9
Q ss_pred cccccceeeeeehhhhhhcccccchhhhhhccCCCCccccc
Q 027484 49 HSQTTGVASTFVASVAAEKEGCRINEVQIRQNIPTKKQFVD 89 (223)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (223)
-||.+.++||||. ||||||++|||+++| +++++|
T Consensus 96 WSMLLAAITTIFl--AAEKQW~mLDwKpkR-----PDML~D 129 (129)
T PF12590_consen 96 WSMLLAAITTIFL--AAEKQWTMLDWKPKR-----PDMLVD 129 (129)
T ss_pred HHHHHHHHHHHHH--HhhhhhhhhcccCCC-----cccccC
Confidence 3788899999998 999999999999999 788877
No 18
>TIGR00369 unchar_dom_1 uncharacterized domain 1. Most proteins containing this domain consist almost entirely of a single copy of this domain. A protein from C. elegans consists of two tandem copies of the domain. The domain is also found as the N-terminal region of an apparent initiation factor eIF-2B alpha subunit of Aquifex aeolicus. The function of the domain is unknown.
Probab=97.61 E-value=0.0036 Score=48.28 Aligned_cols=99 Identities=12% Similarity=-0.030 Sum_probs=78.2
Q ss_pred EEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEE
Q 027484 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182 (223)
Q Consensus 103 y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~ 182 (223)
-+..+.+....+++.|.++=..++.++..++..-... ....+...+-...+++|.+|+.-| .|+++
T Consensus 18 ~~~~~~v~~~~~n~~g~vhGG~l~~l~D~a~~~a~~~-------------~~~~~~~~vt~~l~i~f~~p~~~g-~l~a~ 83 (117)
T TIGR00369 18 LEATMPVDERTLQPFGSLHGGVSAALADTAGSAAGYL-------------CNSGGQAVVGLELNANHLRPAREG-KVRAI 83 (117)
T ss_pred EEEEEEcCHHHcCCcccChHHHHHHHHHHHHHHHHHh-------------hcCCCceEEEEEEEeeeccccCCC-EEEEE
Confidence 3667888898999999999999999986666322211 011234466778999999999999 99999
Q ss_pred EEecccCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 027484 183 TWVGASGKNGMRRDWLIRSQATGHIFARATRYIM 216 (223)
Q Consensus 183 TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WV 216 (223)
.++...++....-+-+|+| ++|++++.|++++.
T Consensus 84 a~v~~~gr~~~~~~~~i~~-~~g~~va~~~~t~~ 116 (117)
T TIGR00369 84 AQVVHLGRQTGVAEIEIVD-EQGRLCALSRGTTA 116 (117)
T ss_pred EEEEecCceEEEEEEEEEC-CCCCEEEEEEEEEc
Confidence 9998888877777788997 78999999999874
No 19
>COG3884 FatA Acyl-ACP thioesterase [Lipid metabolism]
Probab=97.37 E-value=0.001 Score=59.13 Aligned_cols=88 Identities=14% Similarity=0.001 Sum_probs=68.7
Q ss_pred eEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEE
Q 027484 102 GYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEI 181 (223)
Q Consensus 102 ~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I 181 (223)
.....|.||++|+|.+||+||+.|..|+.|.=..|+..+ .+ ..|..++|.++-.+||+|+|
T Consensus 152 s~~~~f~vR~~DID~f~HvNNskY~~wi~e~l~~~~~~~------~~-------------p~r~~l~y~keva~G~~iti 212 (250)
T COG3884 152 SEIHDFPVRYTDIDMFGHVNNSKYWSWIEEVLGSEFLKL------YG-------------PLRLTLEYVKEVAPGEKITI 212 (250)
T ss_pred cccccceeEEEeeccccccccceehHHHHHHHhhhhHhh------cc-------------cceeEEEEEcccCCCCeEEE
Confidence 456689999999999999999999999999988887542 11 23789999999999999999
Q ss_pred EEEecccCCceEEEEEEEEECCCCcEEEEEEEEE
Q 027484 182 DTWVGASGKNGMRRDWLIRSQATGHIFARATRYI 215 (223)
Q Consensus 182 ~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~W 215 (223)
.+-..+.+.. ..+. .||.+.+.+-..|
T Consensus 213 ~~e~~~~~s~------~~f~-~d~~v~~lt~i~~ 239 (250)
T COG3884 213 VYEVHPLESK------HQFT-SDGQVNALTYIVG 239 (250)
T ss_pred EEEEcccCce------eeec-CCcceEEEEEEEe
Confidence 9998655432 1222 4677777666666
No 20
>PRK10694 acyl-CoA esterase; Provisional
Probab=97.33 E-value=0.012 Score=47.57 Aligned_cols=104 Identities=9% Similarity=-0.062 Sum_probs=80.3
Q ss_pred EEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEe-EEEEeecCCCCCEEEE
Q 027484 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRM-QVEIDHYPIWGEVVEI 181 (223)
Q Consensus 103 y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~-~Iei~r~P~~gD~I~I 181 (223)
....+.+.+.+++..|.+.=..+|.|+.+++..-+... .+..++..+. .|++.+|.+.||.|++
T Consensus 12 ~~~~~~v~p~~~N~~g~lfGG~ll~~~D~~a~i~a~~~---------------~~~~~vtv~vd~i~F~~Pv~~Gd~l~~ 76 (133)
T PRK10694 12 LVLRTLAMPADTNANGDIFGGWLMSQMDIGGAILAKEI---------------AHGRVVTVRVEGMTFLRPVAVGDVVCC 76 (133)
T ss_pred eEEEEEcChhhcCCCCcEeHHHHHHHHHHHHHHHHHHH---------------cCCceEEEEECceEECCCcccCcEEEE
Confidence 45567899999999999999999999999877766431 1223677777 7899999999999999
Q ss_pred EEEecccCCceEEEEEEEEE-----CCCCc--EEEEEEEEEEEEecc
Q 027484 182 DTWVGASGKNGMRRDWLIRS-----QATGH--IFARATRYIMYALEE 221 (223)
Q Consensus 182 ~TWv~~~~k~~~~R~f~I~d-----~~~Ge--vla~A~S~WVlVD~e 221 (223)
++|+...++.++.-..+++. +..|+ ....+.-++|-+|.+
T Consensus 77 ~a~V~~~g~sS~~v~v~v~~~~~~~~~~g~~~~~~~~~~tfVavd~~ 123 (133)
T PRK10694 77 YARCVKTGTTSISINIEVWVKKVASEPIGQRYKATEALFTYVAVDPE 123 (133)
T ss_pred EEEEEEccCceEEEEEEEEEeecccCCCCcEEEEEEEEEEEEEECCC
Confidence 99999999988876677763 11133 355677778888765
No 21
>TIGR02286 PaaD phenylacetic acid degradation protein PaaD. Sequences scoring between trusted and noise include those from archaea and other species not known to catabolize phenylacetic acid and which are not adjacent to other genes potentially involved with such a pathway.
Probab=97.27 E-value=0.018 Score=44.39 Aligned_cols=98 Identities=15% Similarity=0.037 Sum_probs=76.6
Q ss_pred EEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEE
Q 027484 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182 (223)
Q Consensus 103 y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~ 182 (223)
-+..+.++...+++.|.++=..++-++..++...+.. + + .. =+-...+++|.+|.+.||.|.++
T Consensus 16 ~~~~l~~~~~~~n~~g~~HGG~i~al~D~~~~~~~~~------~-~-------~~--~~t~~~~i~f~rp~~~G~~l~~~ 79 (114)
T TIGR02286 16 ARVAMTVRADMLNGHGTAHGGFLFSLADSAFAYACNS------Y-G-------DA--AVAAQCTIDFLRPGRAGERLEAE 79 (114)
T ss_pred EEEEEECCHHHcCcCCCchHHHHHHHHHHHHHHHhcC------C-C-------Cc--eEEEEEEEEEecCCCCCCEEEEE
Confidence 3457889999999999999999999997775433211 0 1 11 13457789999999999999999
Q ss_pred EEecccCCceEEEEEEEEECCCCcEEEEEEEEEEE
Q 027484 183 TWVGASGKNGMRRDWLIRSQATGHIFARATRYIMY 217 (223)
Q Consensus 183 TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVl 217 (223)
.++...++....-.-+|+| ++|++++.++.+|-.
T Consensus 80 a~v~~~g~~~~~~~~~i~~-~~~~~va~~~~t~~~ 113 (114)
T TIGR02286 80 AVEVSRGGRTGTYDVEVVN-QEGELVALFRGTSRR 113 (114)
T ss_pred EEEEEeCCcEEEEEEEEEc-CCCCEEEEEEEEEEE
Confidence 9998777765666678897 889999999999864
No 22
>COG5496 Predicted thioesterase [General function prediction only]
Probab=96.81 E-value=0.068 Score=43.52 Aligned_cols=110 Identities=12% Similarity=0.095 Sum_probs=86.7
Q ss_pred cCCceEEEEEEeeecCcCC--C-----CCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEe
Q 027484 98 EGGVGYRQTVVVRSYEVGP--D-----KTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEID 170 (223)
Q Consensus 98 e~g~~y~~~~~Vr~~E~D~--~-----G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~ 170 (223)
.+|+.|+.++.|+-..+++ . ..+-=..++.||++++..-... ..++|.+=|-+...++-.
T Consensus 2 ~~g~~~e~~~lv~dn~t~~~~~~~~~~~VlATp~mi~~~E~a~~el~~~-------------~Ld~g~ttVG~ev~vrHl 68 (130)
T COG5496 2 MDGLTLEGEFLVRDNHTVPPAEGSGMLNVLATPAMIGFMENASYELLQP-------------YLDNGETTVGTEVLVRHL 68 (130)
T ss_pred CCceeeEEEEEecccccCchhHhCCccceeehHHHHHHHHHHHHHHHHh-------------hCcCCcceeeEEEEeeec
Confidence 4788999999999988883 1 1233356788898888876542 234688889999999989
Q ss_pred ecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEEeccc
Q 027484 171 HYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYALEEL 222 (223)
Q Consensus 171 r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD~e~ 222 (223)
.+.--|.+|+|.+.+.+.++.....+-+.. ++|+++++|+-+-+.+|.|-
T Consensus 69 a~~~~G~~V~i~~~l~~v~Gr~v~f~i~a~--~~~~~Ig~g~h~R~iv~~~k 118 (130)
T COG5496 69 AATPPGLTVTIGARLEKVEGRKVKFRIIAM--EGGDKIGEGTHTRVIVPREK 118 (130)
T ss_pred cCCCCCCeEEEEEEEEEEeccEEEEEEEEe--eCCcEEeeeEEEEEEecHHH
Confidence 999999999999999998776665544444 58999999999999999874
No 23
>PRK11688 hypothetical protein; Provisional
Probab=96.22 E-value=0.22 Score=40.66 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=73.4
Q ss_pred EEEEEEeeecCcC--CCCCcCHHHHHHHHHHHHHHHHHhhccCCCCC-CcchhhhhCCeEE-EEEEeEEEEeecCCCCCE
Q 027484 103 YRQTVVVRSYEVG--PDKTATLESILNLFQETALNHVWMSGLLSNGF-GATHGMMRNNLIW-VVSRMQVEIDHYPIWGEV 178 (223)
Q Consensus 103 y~~~~~Vr~~E~D--~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~-g~~~~l~~~g~aW-VL~r~~Iei~r~P~~gD~ 178 (223)
-+..+.++...++ +.|.++=..++.++..+ ...+-.... ..+. +.++.-......+ +-..+.++|.++.+ |+.
T Consensus 39 ~~~~l~~~~~~~~n~~~G~vHGG~i~tl~D~a-~g~a~~~~~-~~~~~~~~~~~~~~~~~~~vTi~l~i~fl~p~~-g~~ 115 (154)
T PRK11688 39 VELSFKMQPELVGNIAQSILHGGVIASVLDVA-GGLVCVGGI-LARHEDISEEELRQRLSRLGTIDLRVDYLRPGR-GER 115 (154)
T ss_pred EEEEeeCCHHHcCCCCcCeeeHHHHHHHHHHH-HHHHHHhhc-ccccccccccccccccccceEEEEEEEeeccCC-CCe
Confidence 4556778888886 57888888888887444 444321100 0000 0000000011223 45589999999996 999
Q ss_pred EEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEE
Q 027484 179 VEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMY 217 (223)
Q Consensus 179 I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVl 217 (223)
|+++-++...++..+.-+-+|+| ++|+++++|+++|.+
T Consensus 116 l~a~a~v~~~g~r~~~~~~~i~~-~~g~lvA~a~~t~~v 153 (154)
T PRK11688 116 FTATSSVLRAGNKVAVARMELHN-EQGVHIASGTATYLV 153 (154)
T ss_pred EEEEEEEEEccCCEEEEEEEEEC-CCCCEEEEEEEEEEe
Confidence 99999998887766666688997 789999999999874
No 24
>PRK10293 acyl-CoA esterase; Provisional
Probab=96.17 E-value=0.34 Score=39.20 Aligned_cols=101 Identities=11% Similarity=-0.091 Sum_probs=79.1
Q ss_pred EEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEE
Q 027484 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182 (223)
Q Consensus 103 y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~ 182 (223)
-+.++.|+...+++.|.++=..++.++..++..-... ....+...+-....++|.+|.+-| .|+.+
T Consensus 36 ~~~~~~v~~~~~n~~G~lHGGv~~tLaD~a~~~a~~~-------------~~~~~~~~vTiel~infl~p~~~g-~l~a~ 101 (136)
T PRK10293 36 LEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYL-------------CTEGEQKVVGLEINANHVRSAREG-RVRGV 101 (136)
T ss_pred EEEEEEcCHHHcCCcCcccHHHHHHHHHHHHHHHHHh-------------cccCCceEEEEEEEeEEecccCCc-eEEEE
Confidence 4667888888999999999999998885443322211 112344567779999999999876 69999
Q ss_pred EEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 027484 183 TWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYA 218 (223)
Q Consensus 183 TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlV 218 (223)
-++...++..+.=+-+|+| ++|++++.++.+|.++
T Consensus 102 a~vv~~Gr~~~~~~~~v~d-~~g~l~A~~~~t~~i~ 136 (136)
T PRK10293 102 CKPLHLGSRHQVWQIEIFD-EKGRLCCSSRLTTAIL 136 (136)
T ss_pred EEEEecCCCEEEEEEEEEe-CCCCEEEEEEEEEEEC
Confidence 9998888887777789997 7999999999999864
No 25
>cd03449 R_hydratase (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. (R)-hydratase contains a hot-dog fold similar to those of thioesterase II, and beta-hydroxydecanoyl-ACP dehydratase, MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit. The active site lies within a substrate-binding tunnel formed by the (R)-hydratase homodimer. A subset of the bacterial (R)-hydratases contain a C-terminal phosphotransacetylase (PTA) domain.
Probab=95.76 E-value=0.13 Score=39.36 Aligned_cols=55 Identities=7% Similarity=0.029 Sum_probs=44.3
Q ss_pred EEEEEEeEEEEeecCCCCCEEEEEEEecccCC--ceEEEEEEEEECCCCcEEEEEEEE
Q 027484 159 IWVVSRMQVEIDHYPIWGEVVEIDTWVGASGK--NGMRRDWLIRSQATGHIFARATRY 214 (223)
Q Consensus 159 aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k--~~~~R~f~I~d~~~Gevla~A~S~ 214 (223)
..+....++++.+|...||+|+++.++.+... ....-..++++ .+|+++++|+..
T Consensus 69 ~~~~~~~~~~f~~Pv~~gd~l~~~~~v~~~~~~~~~v~~~~~~~~-~~g~~v~~g~~~ 125 (128)
T cd03449 69 GTIYLSQSLRFLRPVFIGDTVTATVTVTEKREDKKRVTLETVCTN-QNGEVVIEGEAV 125 (128)
T ss_pred eEEEEEEEEEECCCccCCCEEEEEEEEEEEecCCCEEEEEEEEEe-CCCCEEEEEEEE
Confidence 45667889999999999999999999976543 45556677886 689999998865
No 26
>KOG3328 consensus HGG motif-containing thioesterase [General function prediction only]
Probab=94.77 E-value=0.63 Score=38.83 Aligned_cols=105 Identities=21% Similarity=0.126 Sum_probs=82.2
Q ss_pred cCCceEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCC
Q 027484 98 EGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGE 177 (223)
Q Consensus 98 e~g~~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD 177 (223)
++|. -+.+++|....+++.|.++-.....+...++..-.-. ......-|-..+.|.|..+.+.||
T Consensus 35 ~~Gr-v~ce~kV~~~~~N~~k~LHGG~tAtLvD~i~s~~~~~--------------~~~~~~gvsvdLsvsyL~~AklGe 99 (148)
T KOG3328|consen 35 EPGR-VSCELKVTPDHLNRFKTLHGGATATLVDLITSAALLM--------------TSGFKPGVSVDLSVSYLSSAKLGE 99 (148)
T ss_pred cCce-EEEEEEeCHHHcCccccccccchhhHHHHHhhHHHHh--------------ccCCCCceEEEEEhhhccccCCCC
Confidence 3443 4678999999999999999998888887776653211 111122466789999999999999
Q ss_pred EEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEE
Q 027484 178 VVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMY 217 (223)
Q Consensus 178 ~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVl 217 (223)
.|.|+--+...++....=+-+++...+|++++.++-+-.+
T Consensus 100 ~l~i~a~~vr~Gk~la~t~v~l~~K~t~kiia~grhtk~~ 139 (148)
T KOG3328|consen 100 ELEIEATVVRVGKTLAFTDVELRRKSTGKIIAKGRHTKYF 139 (148)
T ss_pred eEEEEEEEeecCceEEEEEEEEEEcCCCeEEEecceEEEe
Confidence 9999999999999988888888876779999998765444
No 27
>COG2050 PaaI HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.64 E-value=1.6 Score=34.82 Aligned_cols=105 Identities=14% Similarity=0.046 Sum_probs=83.0
Q ss_pred EEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEE
Q 027484 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182 (223)
Q Consensus 103 y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~ 182 (223)
-+..+.+......+.|.++=..++.++..++..-.... .+.+ . .-+-....+++.|+.+-|+ ++.+
T Consensus 36 ~~~~l~~~~~~~~~~G~~HGG~i~alaD~a~~~a~~~~----~~~~-------~--~~~ti~l~i~flr~~~~g~-v~a~ 101 (141)
T COG2050 36 AEATLPVDPELLNPGGILHGGVIAALADSAAGLAANSL----LGVV-------A--LAVTLELNINFLRPVKEGD-VTAE 101 (141)
T ss_pred EEEEeecCHHHcCCCceeeHHHHHHHHHHHHHHHHhhc----cCcc-------c--eeEEEEEEehhccCCCCCe-EEEE
Confidence 46677888888889999999999999977777666542 1111 1 1166788899999999999 9999
Q ss_pred EEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEEecc
Q 027484 183 TWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYALEE 221 (223)
Q Consensus 183 TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD~e 221 (223)
-.+...++.-..-+-++++++.|++++.++.+|.+++.+
T Consensus 102 a~v~~~G~~~~v~~i~v~~~~~~~lva~~~~t~~v~~~~ 140 (141)
T COG2050 102 ARVLHLGRRVAVVEIEVKNDEGGRLVAKGTGTYAVLRKR 140 (141)
T ss_pred EEEEeeCCEEEEEEEEEEECCCCeEEEEEEEEEEEecCC
Confidence 999888888777888899646679999999999988754
No 28
>PRK10254 thioesterase; Provisional
Probab=94.13 E-value=2.6 Score=34.19 Aligned_cols=101 Identities=10% Similarity=-0.045 Sum_probs=79.1
Q ss_pred EEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEE
Q 027484 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182 (223)
Q Consensus 103 y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~ 182 (223)
-+..+.++...+.+.|.++=..++.++..++..-+.. ....+...+=..+.++|.+|.+-| .|+.+
T Consensus 36 ~~~~l~v~~~~~n~~G~vHGGv~~tLaD~a~g~A~~~-------------~~~~g~~~vTiel~in~Lrp~~~g-~l~a~ 101 (137)
T PRK10254 36 LEAEMPVDTRTHQPFGLLHGGASAALAETLGSMAGFL-------------MTRDGQCVVGTELNATHHRPVSEG-KVRGV 101 (137)
T ss_pred EEEEEEcCccccCCCCcchHHHHHHHHHHHHHHHHHh-------------hCCCCCeEEEEEEEeEEeccCcCC-eEEEE
Confidence 4567788888899999999999998886554433321 112455678889999999999866 79999
Q ss_pred EEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 027484 183 TWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYA 218 (223)
Q Consensus 183 TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlV 218 (223)
-.+...++.-..=+-+|+| ++|++++.++.+-.++
T Consensus 102 a~vi~~Gr~~~v~~~~v~d-~~g~l~a~~~~t~~i~ 136 (137)
T PRK10254 102 CQPLHLGRQNQSWEIVVFD-EQGRRCCTCRLGTAVL 136 (137)
T ss_pred EEEEecCcCEEEEEEEEEc-CCCCEEEEEEEEEEEe
Confidence 9998888877777789997 7999999999887654
No 29
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=93.88 E-value=0.36 Score=45.78 Aligned_cols=102 Identities=19% Similarity=0.128 Sum_probs=86.0
Q ss_pred ccccCCceEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCC
Q 027484 95 LIIEGGVGYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPI 174 (223)
Q Consensus 95 ~~~e~g~~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~ 174 (223)
.|.|.+..|...++|.+.-++..|.+++..+-.++.++...-... . ++.--++-.+.+-+.++..
T Consensus 325 ~l~e~~~~~~~t~~V~P~M~n~~Gtis~gv~~~ll~e~~qr~l~k-------------~--~~~niiIE~i~iyflk~vq 389 (432)
T COG4109 325 NLSEKGDEYGVTVEVEPQMINSLGTISNGVFTELLTEVVQRVLRK-------------K--KKRNIIIENITIYFLKPVQ 389 (432)
T ss_pred hhhhhccccceEEEechhhccccccchHHHHHHHHHHHHHHHHHH-------------h--cCCceEEEeeeeeeeccee
Confidence 456677778888999999999999999999999999988765532 1 3334678889999999999
Q ss_pred CCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEE
Q 027484 175 WGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATR 213 (223)
Q Consensus 175 ~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S 213 (223)
..+.|+|.+.+-+.++.++.-+++|+. +|+++++|--
T Consensus 390 id~~l~I~prIl~~gR~~a~idvei~~--~~~ivaKAiv 426 (432)
T COG4109 390 IDSVLEIYPRILEEGRKFAKIDVEIYH--DGQIVAKAIV 426 (432)
T ss_pred cccEEEEeeeeeccccccceeEEEEee--Ccchhhhhee
Confidence 999999999999999999999999994 7888887743
No 30
>cd00556 Thioesterase_II Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=93.85 E-value=0.52 Score=34.25 Aligned_cols=57 Identities=12% Similarity=0.005 Sum_probs=50.2
Q ss_pred EEEEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 027484 159 IWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIM 216 (223)
Q Consensus 159 aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WV 216 (223)
.-+...+++.+.+++.-+|.+..+.++...++.+..+.-+|++ ++|++++.+.....
T Consensus 42 ~~~t~~~~i~F~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~-~~G~lva~~~~~~~ 98 (99)
T cd00556 42 GFASLDHHIYFHRPGDADEWLLYEVESLRDGRSRALRRGRAYQ-RDGKLVASATQSFL 98 (99)
T ss_pred CeeeeEEEEEEcCCCCCCccEEEEEEecccCCCceEEEEEEEC-CCCcEEEEEEEeEc
Confidence 3567789999999999999999999999999889999999996 78999999987654
No 31
>TIGR01750 fabZ beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains.
Probab=93.57 E-value=2.9 Score=32.92 Aligned_cols=86 Identities=8% Similarity=0.009 Sum_probs=57.7
Q ss_pred cCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEE-eEEEEeecCCCCCEEEEEEEecccCCceEEEEEE
Q 027484 120 ATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSR-MQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWL 198 (223)
Q Consensus 120 v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r-~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~ 198 (223)
+--.-++.+|-+++..++-. ..+ .....+...++.+ -++++.++..-||++++..+..........-+.+
T Consensus 53 ~Pg~l~iE~~aQ~~~~~~~~------~~~---~~~~~~~~~~l~~~~~~kF~~~v~pGd~l~i~~~i~~~~~~~~~~~~~ 123 (140)
T TIGR01750 53 MPGVLIVEALAQAGGVLAIL------SLG---GEIGKGKLVYFAGIDKAKFRRPVVPGDQLILHAEFLKKRRKIGKFKGE 123 (140)
T ss_pred ChHHHHHHHHHHHHHHHhec------ccc---ccCCCCcEEEEeecceeEECCccCCCCEEEEEEEEEEccCCEEEEEEE
Confidence 44445778887777766411 111 0011233445555 5999999999999999999997665555666677
Q ss_pred EEECCCCcEEEEEEEEEE
Q 027484 199 IRSQATGHIFARATRYIM 216 (223)
Q Consensus 199 I~d~~~Gevla~A~S~WV 216 (223)
++ .+|+++++|+...+
T Consensus 124 ~~--~~g~~va~~~~~~~ 139 (140)
T TIGR01750 124 AT--VDGKVVAEAEITFA 139 (140)
T ss_pred EE--ECCEEEEEEEEEEE
Confidence 76 57999999987654
No 32
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=93.43 E-value=0.76 Score=35.58 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=42.6
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEecccCCc-eEEEEEEEEECCCCcEEEEEEEE
Q 027484 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGASGKN-GMRRDWLIRSQATGHIFARATRY 214 (223)
Q Consensus 160 WVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~-~~~R~f~I~d~~~Gevla~A~S~ 214 (223)
..+.++.+++.+|...||+|+++.++.+.+.- ...-..++.| .+|+++++++..
T Consensus 67 ~~~~~~~~rf~~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~n-q~G~~v~~g~a~ 121 (123)
T cd03455 67 ARVKSFAFRLGAPLYAGDTLRFGGRVTAKRDDEVVTVELWARN-SEGDHVMAGTAT 121 (123)
T ss_pred ceEEEEEEEeeccccCCCEEEEEEEEEeeccCcEEEEEEEEEc-CCCCEEEeEEEE
Confidence 44567899999999999999999999654322 5566678886 889999888764
No 33
>COG1607 Acyl-CoA hydrolase [Lipid metabolism]
Probab=93.40 E-value=4.2 Score=34.17 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=66.2
Q ss_pred EEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEEE
Q 027484 105 QTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTW 184 (223)
Q Consensus 105 ~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~TW 184 (223)
....+-+.|++++|.+.=..+|.||-++|.--+... ..+..--++==+|.+.+|.+.||.|.+.+|
T Consensus 16 ~~~lv~P~dtN~~g~ifGG~lm~~mD~~a~i~A~~~--------------a~~~vVTasvd~v~F~~Pv~vGd~v~~~a~ 81 (157)
T COG1607 16 LRTLVMPSDTNPNGTIFGGWLLSWMDLAAAIAASRH--------------AGGRVVTASVDSVDFKKPVRVGDIVCLYAR 81 (157)
T ss_pred EEEEecCCccCcccccccHHHHHHHHHHHHHHHHHH--------------hCCeEEEEEeceEEEccccccCcEEEEEEE
Confidence 678899999999999999999999999887766431 122222222337999999999999999999
Q ss_pred ecccCCceEEEEEEEEE
Q 027484 185 VGASGKNGMRRDWLIRS 201 (223)
Q Consensus 185 v~~~~k~~~~R~f~I~d 201 (223)
+...++-++.-.-+++.
T Consensus 82 v~~~GrTSm~V~Vev~~ 98 (157)
T COG1607 82 VVYTGRTSMEVGVEVWA 98 (157)
T ss_pred EeecCcccEEEEEEEEE
Confidence 99999998877666654
No 34
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=93.14 E-value=3.6 Score=32.71 Aligned_cols=99 Identities=12% Similarity=0.027 Sum_probs=64.4
Q ss_pred eEEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEE
Q 027484 102 GYRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEI 181 (223)
Q Consensus 102 ~y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I 181 (223)
..+.....+..--+..|.+.-.+++...+-++....... + ..++.|++...+|+|.++.+ | .|+.
T Consensus 30 ~~~v~l~~~~~~~N~~gt~h~gAl~~laE~~~g~~~~~~------l-------~~~~~~~~k~~~i~f~kpa~-g-~v~a 94 (132)
T PF14539_consen 30 RVVVRLPLRPRNRNHVGTIHAGALFTLAEPAYGLLLMSN------L-------GDKYRVWDKSAEIDFLKPAR-G-DVTA 94 (132)
T ss_dssp EEEEEE-S-CCGB-TTSSB-HHHHHHHHHCHHHHHHHHH------S--------TTEEEEEEEEEEEE-S----S--EEE
T ss_pred EEEEEEcCCccccCcCcchHHHHHHHHHHHHHHHHHHHh------C-------CCcEEEEEEeeEEEEEeccC-C-cEEE
Confidence 455667777788999999999999999987777665431 1 23778999999999999965 4 3444
Q ss_pred EEEecc--cC-CceEEEEEEEEECCCCcEEEEEEEEEE
Q 027484 182 DTWVGA--SG-KNGMRRDWLIRSQATGHIFARATRYIM 216 (223)
Q Consensus 182 ~TWv~~--~~-k~~~~R~f~I~d~~~Gevla~A~S~WV 216 (223)
+.-... .+ +....-...|+| ++|++++++.-+|-
T Consensus 95 ~~~~~~e~~~~~~~~~~~v~i~D-~~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 95 TAELTEEQIGERGELTVPVEITD-ADGEVVAEATITWY 131 (132)
T ss_dssp EEE-TCCHCCHEEEEEEEEEEEE-TTC-EEEEEEEEEE
T ss_pred EEEcCHHHhCCCcEEEEEEEEEE-CCCCEEEEEEEEEE
Confidence 444422 22 444555667898 89999999999994
No 35
>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=93.08 E-value=1.1 Score=33.90 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=43.8
Q ss_pred eEEEEEEeEEEEeecCCCCCEEEEEEEecccCC----ceEEEEEEEEECCCCcEEEEEEE
Q 027484 158 LIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGK----NGMRRDWLIRSQATGHIFARATR 213 (223)
Q Consensus 158 ~aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k----~~~~R~f~I~d~~~Gevla~A~S 213 (223)
..+++...++++.+|...||+|+++.++..... .......+..+ .+|+++..|+.
T Consensus 66 ~~~~~~~~~~~f~~Pv~~Gd~l~~~~~v~~~~~~~~~~~v~~~~~~~n-~~g~~v~~g~~ 124 (127)
T cd03441 66 DGANLGSQSVRFLAPVFPGDTLRVEVEVLGKRPSKGRGVVTVRTEARN-QGGEVVLSGEA 124 (127)
T ss_pred ccceeEEeEEEEeCCcCCCCEEEEEEEEEEeeccCCCcEEEEEEEEEe-CCCCEEEEEEE
Confidence 347788999999999999999999999976642 34566677786 68888888664
No 36
>PRK00006 fabZ (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed
Probab=92.48 E-value=4.5 Score=32.17 Aligned_cols=103 Identities=9% Similarity=-0.050 Sum_probs=65.3
Q ss_pred EEEEEEeeecCcCCCCC------cCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEe-EEEEeecCCC
Q 027484 103 YRQTVVVRSYEVGPDKT------ATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRM-QVEIDHYPIW 175 (223)
Q Consensus 103 y~~~~~Vr~~E~D~~G~------v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~-~Iei~r~P~~ 175 (223)
.+-...|...+.=..|| +.-.-++.+|-+++..++... . . ..+..+++... ++++.++..-
T Consensus 37 ~~~~~~v~~d~~~~~ghfp~~pi~PG~l~iE~~aQ~~~~~~~~~-------~---~--~~~~~~~l~gi~~~kF~~pv~p 104 (147)
T PRK00006 37 IVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAGVLALKS-------E---E--NKGKLVYFAGIDKARFKRPVVP 104 (147)
T ss_pred EEEEEEecCCCccccCCCcCCCcCchhHHHHHHHHHHHHHHhcC-------c---C--cCCcEEEEeeeeEEEEccccCC
Confidence 34445554444333333 333445667767666554210 0 1 12334555554 7999999999
Q ss_pred CCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 027484 176 GEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYAL 219 (223)
Q Consensus 176 gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD 219 (223)
||+|+++.++...++....-+.+++ .+|+++++|+...++-|
T Consensus 105 Gd~l~i~~~i~~~~~~~v~~~~~~~--~~g~~v~~~~~~~~~~~ 146 (147)
T PRK00006 105 GDQLILEVELLKQRRGIWKFKGVAT--VDGKLVAEAELMFAIRD 146 (147)
T ss_pred CCEEEEEEEEEEeeCCEEEEEEEEE--ECCEEEEEEEEEEEEEc
Confidence 9999999999766555555666776 47999999998877643
No 37
>cd01288 FabZ FabZ is a 17kD beta-hydroxyacyl-acyl carrier protein (ACP) dehydratase that primarily catalyzes the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, the third step in the elongation phase of the bacterial/ plastid, type II, fatty-acid biosynthesis pathway.
Probab=92.44 E-value=3.9 Score=31.29 Aligned_cols=83 Identities=10% Similarity=0.002 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEEC
Q 027484 123 ESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQ 202 (223)
Q Consensus 123 s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~ 202 (223)
.-++.+|-+++..+.... + .. ...+..+.+.-.++++.++..-||+++++.++...+.....-..+++
T Consensus 48 ~l~iE~~aQ~~~~~~~~~-----~----~~-~~~~~~~l~~~~~~kf~~pv~pgd~l~i~~~v~~~~~~~~~~~~~~~-- 115 (131)
T cd01288 48 VLIIEALAQAAGILGLKS-----L----ED-FEGKLVYFAGIDKARFRKPVVPGDQLILEVELLKLRRGIGKFKGKAY-- 115 (131)
T ss_pred hHHHHHHHHHHHHHhhhc-----c----cc-cCCcEEEEeeecccEEccccCCCCEEEEEEEEEEeeCCEEEEEEEEE--
Confidence 345667777777664321 0 01 12334455555899999999999999999999777655566667776
Q ss_pred CCCcEEEEEEEEEEE
Q 027484 203 ATGHIFARATRYIMY 217 (223)
Q Consensus 203 ~~Gevla~A~S~WVl 217 (223)
.+|+++++|+-..+.
T Consensus 116 ~~g~~v~~~~~~~~~ 130 (131)
T cd01288 116 VDGKLVAEAELMFAI 130 (131)
T ss_pred ECCEEEEEEEEEEEE
Confidence 579999999876654
No 38
>cd03447 FAS_MaoC FAS_MaoC, the MaoC-like hot dog fold of the fatty acid synthase, beta subunit. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and 17-beta-hydroxysteriod dehydrogenase (HSD).
Probab=91.40 E-value=2.1 Score=33.87 Aligned_cols=52 Identities=10% Similarity=-0.022 Sum_probs=40.7
Q ss_pred EEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCC-CcEEEEEEEE
Q 027484 162 VSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQAT-GHIFARATRY 214 (223)
Q Consensus 162 L~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~-Gevla~A~S~ 214 (223)
+.++++++.+|...||+|+++.|+.+...-...-.+++++ .+ |+++..++..
T Consensus 70 ~~~~~~rf~~PV~~gdtl~~~~~v~~~~~~~~~~~~~~~n-q~~g~~V~~g~~~ 122 (126)
T cd03447 70 VRSFTASFVGMVLPNDELEVRLEHVGMVDGRKVIKVEARN-EETGELVLRGEAE 122 (126)
T ss_pred EEEEEEEEcccCcCCCEEEEEEEEEEEeCCeEEEEEEEEE-CCCCCEEEEEEEE
Confidence 3467999999999999999999997654444566678887 56 8988887754
No 39
>PRK13691 (3R)-hydroxyacyl-ACP dehydratase subunit HadC; Provisional
Probab=90.91 E-value=2.6 Score=35.17 Aligned_cols=58 Identities=9% Similarity=-0.004 Sum_probs=44.3
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEecccC----CceEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 027484 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASG----KNGMRRDWLIRSQATGHIFARATRYIMYAL 219 (223)
Q Consensus 161 VL~r~~Iei~r~P~~gD~I~I~TWv~~~~----k~~~~R~f~I~d~~~Gevla~A~S~WVlVD 219 (223)
+-....+++.+|.+.||+|+++..+.+.. +-...-..++.| .+|++++++...++.=+
T Consensus 85 v~~~q~~~f~rPV~~GDtL~~~~~V~~~~~~~~~g~V~~~~~~~N-Q~Ge~V~~~~~~~~~~~ 146 (166)
T PRK13691 85 VQVDQRFVFHKPVLAGDKLWARMDIHSVDERFGADIVVTRNVCTN-DDGELVMEAYTTLMGQQ 146 (166)
T ss_pred eeeeeEEEEeCCcCCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEC-CCCCEEEEEEEEEEEec
Confidence 44457888999999999999999886542 123555577786 89999999998876543
No 40
>cd03454 YdeM YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function. YdeM has sequence similarity to the hot-dog fold of (R)-specific enoyl-CoA hydratase. Other enzymes with this fold include the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=90.70 E-value=1.4 Score=34.64 Aligned_cols=51 Identities=6% Similarity=-0.022 Sum_probs=40.3
Q ss_pred eEEEEeecCCCCCEEEEEEEecccC-------CceEEEEEEEEECCCCcEEEEEEEEEE
Q 027484 165 MQVEIDHYPIWGEVVEIDTWVGASG-------KNGMRRDWLIRSQATGHIFARATRYIM 216 (223)
Q Consensus 165 ~~Iei~r~P~~gD~I~I~TWv~~~~-------k~~~~R~f~I~d~~~Gevla~A~S~WV 216 (223)
..+++.+|...||+|+++.++.+.. +-...-...+.| .+|+++++++...+
T Consensus 81 ~~~~f~~pv~~Gd~l~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~g~~v~~~~~~~~ 138 (140)
T cd03454 81 DELRWPRPVRPGDTLSVEVEVLDKRPSRSRPDRGIVTLRSETLN-QRGEVVLTFEATVL 138 (140)
T ss_pred eeeEeCCCCCCCCEEEEEEEEEEEeecCCCCCCeEEEEEEEEEc-CCCCEEEEEEehhe
Confidence 4899999999999999999996542 124556677886 88999999987654
No 41
>cd03446 MaoC_like MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=90.51 E-value=1.8 Score=33.86 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=39.5
Q ss_pred eEEEEeecCCCCCEEEEEEEecccCC------ceEEEEEEEEECCCCcEEEEEEEEEE
Q 027484 165 MQVEIDHYPIWGEVVEIDTWVGASGK------NGMRRDWLIRSQATGHIFARATRYIM 216 (223)
Q Consensus 165 ~~Iei~r~P~~gD~I~I~TWv~~~~k------~~~~R~f~I~d~~~Gevla~A~S~WV 216 (223)
..+++.+|...||+|+++.++..... -...-...+++ .+|++++++.+..+
T Consensus 83 ~~~~f~~pv~~GD~l~~~~~v~~~~~~~~~~~~~v~~~~~~~n-q~g~~v~~~~~~~l 139 (140)
T cd03446 83 DNLRFLNPVFIGDTIRAEAEVVEKEEKDGEDAGVVTRRIEVVN-QRGEVVQSGEMSLL 139 (140)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEecccCCCCceEEEEEEEEEc-CCCCEEEEEEEeee
Confidence 38999999999999999999965421 13444566776 78999999988765
No 42
>cd03453 SAV4209_like SAV4209_like. Similar in sequence to the Streptomyces avermitilis SAV4209 protein, with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.
Probab=89.89 E-value=2.6 Score=32.76 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=39.9
Q ss_pred EEEeEEEEeecCCCCCEEEEEEEeccc----CCceEEEEEEEEECCCCcEEEEEEEE
Q 027484 162 VSRMQVEIDHYPIWGEVVEIDTWVGAS----GKNGMRRDWLIRSQATGHIFARATRY 214 (223)
Q Consensus 162 L~r~~Iei~r~P~~gD~I~I~TWv~~~----~k~~~~R~f~I~d~~~Gevla~A~S~ 214 (223)
+.++.+++.+|...||+|+++.++.+. ++-...-..++.+ .+|+++..++..
T Consensus 70 i~~~~~rf~~Pv~~Gdtl~~~~~v~~~~~~~~~~~v~~~~~~~n-q~g~~v~~g~a~ 125 (127)
T cd03453 70 VVSFGVRFTKPVPVPDTLTCTGIVVEKTVADGEDALTVTVDATD-QAGGKKVLGRAI 125 (127)
T ss_pred eEEEEEEECCcCcCCCEEEEEEEEEEEEecCCCcEEEEEEEEEE-cCCCEEEEEEEE
Confidence 357789999999999999999998543 1224555677887 789998887753
No 43
>cd03451 FkbR2 FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes. FkbR2 has sequence similarity to (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The function of FkbR2 is unknown.
Probab=88.12 E-value=3 Score=32.81 Aligned_cols=52 Identities=10% Similarity=-0.015 Sum_probs=39.9
Q ss_pred eEEEEeecCCCCCEEEEEEEecccCC-------ceEEEEEEEEECCCCcEEEEEEEEEEE
Q 027484 165 MQVEIDHYPIWGEVVEIDTWVGASGK-------NGMRRDWLIRSQATGHIFARATRYIMY 217 (223)
Q Consensus 165 ~~Iei~r~P~~gD~I~I~TWv~~~~k-------~~~~R~f~I~d~~~Gevla~A~S~WVl 217 (223)
.++++.+|...||+|+++..+..... ....-..++.+ .+|+++++++.+.++
T Consensus 84 ~~~~f~~pv~~GDtl~~~~~v~~~~~~~~~~~~~~v~~~~~~~n-q~g~~V~~~~~~~~~ 142 (146)
T cd03451 84 DEVRFPAPVFHGDTLYAESEVLSKRESKSRPDAGIVTVRTVGYN-QDGEPVLSFERTALV 142 (146)
T ss_pred cEEEecCCCCCCCEEEEEEEEEEEecCCCCCCCeEEEEEEEEEC-CCCCEEEEEEehhEE
Confidence 47999999999999999999965431 23444566665 789999999987654
No 44
>cd00493 FabA_FabZ FabA/Z, beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratases: One of several distinct enzyme types of the dissociative, type II, fatty acid synthase system (found in bacteria and plants) required to complete successive cycles of fatty acid elongation. The third step of the elongation cycle, the dehydration of beta-hydroxyacyl-ACP to trans-2-acyl-ACP, is catalyzed by FabA or FabZ. FabA is bifunctional and catalyzes an additional isomerization reaction of trans-2-acyl-ACP to cis-3-acyl-ACP, an essential reaction to unsaturated fatty acid synthesis. FabZ is the primary dehydratase that participates in the elongation cycles of saturated as well as unsaturated fatty acid biosynthesis, whereas FabA is more active in the dehydration of beta-hydroxydecanoyl-ACP. The FabA structure is homodimeric with two independent active sites located at the dimer interface.
Probab=87.99 E-value=9.9 Score=28.84 Aligned_cols=84 Identities=11% Similarity=0.013 Sum_probs=60.4
Q ss_pred CCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEE-eEEEEeecCCCCCEEEEEEEecccCCceEEEE
Q 027484 118 KTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSR-MQVEIDHYPIWGEVVEIDTWVGASGKNGMRRD 196 (223)
Q Consensus 118 G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r-~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~ 196 (223)
..+--.-++.++-+++..+.... +.. ....+..+++.. -.+++.++..-||+++++.+....+.-....+
T Consensus 42 p~lPg~~~iE~~aQ~~~~~~~~~-----~~~----~~~~~~~~~l~~~~~~kf~~~v~pgd~l~i~~~i~~~~~~~~~~~ 112 (131)
T cd00493 42 PVMPGVLGIEAMAQAAAALAGLL-----GLG----KGNPPRLGYLAGVRKVKFRGPVLPGDTLTLEVELLKVRRGLGKFD 112 (131)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhc-----ccc----cccCCcEEEEEEcceeEECCCcCCCCEEEEEEEEEEeeCCEEEEE
Confidence 45666777889888888887432 111 002333344444 68999999999999999999987765566677
Q ss_pred EEEEECCCCcEEEEEE
Q 027484 197 WLIRSQATGHIFARAT 212 (223)
Q Consensus 197 f~I~d~~~Gevla~A~ 212 (223)
..++. +|+++++++
T Consensus 113 ~~~~~--~g~~v~~~~ 126 (131)
T cd00493 113 GRAYV--DGKLVAEAE 126 (131)
T ss_pred EEEEE--CCEEEEEEE
Confidence 88884 699999988
No 45
>PRK13692 (3R)-hydroxyacyl-ACP dehydratase subunit HadA; Provisional
Probab=87.82 E-value=6.1 Score=32.65 Aligned_cols=55 Identities=9% Similarity=0.161 Sum_probs=43.0
Q ss_pred EeEEEEeecCCCCCEEEEEEEeccc----CCceEEEEEEEEECCCCcEEEEEEEEEEEEe
Q 027484 164 RMQVEIDHYPIWGEVVEIDTWVGAS----GKNGMRRDWLIRSQATGHIFARATRYIMYAL 219 (223)
Q Consensus 164 r~~Iei~r~P~~gD~I~I~TWv~~~----~k~~~~R~f~I~d~~~Gevla~A~S~WVlVD 219 (223)
..++++.+|.+.||+|+++..+... ++-.......+++ .+|+++.++++.-+.-.
T Consensus 88 ~q~~~f~~PV~~GDtL~~~~eV~~~~~~~~~giv~~~~~v~N-q~Ge~V~~~~~~~~~r~ 146 (159)
T PRK13692 88 DQVLKFEKPIVAGDKLYCDVYVDSVREAHGTQIIVTKNIVTN-EEGDVVQETYTTLAGRA 146 (159)
T ss_pred eeEEEEeCCccCCCEEEEEEEEEEEEEcCCceEEEEEEEEEc-CCCCEEEEEEEEEEEec
Confidence 4788999999999999999998543 2234566677886 88999999998877643
No 46
>PF13452 MaoC_dehydrat_N: N-terminal half of MaoC dehydratase; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1S9C_K 3OML_A 3KHP_A.
Probab=87.51 E-value=2.1 Score=33.17 Aligned_cols=50 Identities=12% Similarity=0.024 Sum_probs=36.0
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEecccC-------CceEEEEEEEEECCCCcEEEE
Q 027484 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGASG-------KNGMRRDWLIRSQATGHIFAR 210 (223)
Q Consensus 160 WVL~r~~Iei~r~P~~gD~I~I~TWv~~~~-------k~~~~R~f~I~d~~~Gevla~ 210 (223)
-|-....+++++|++-||+|++++.+.... ..+..-..+++| .+|+++++
T Consensus 75 ~vh~~~~~~~h~Pl~~Gd~l~~~~~v~~v~~k~g~G~~~~v~~~~~~~~-~~Ge~v~t 131 (132)
T PF13452_consen 75 LVHGEQDIEFHRPLRPGDTLTATSRVTDVYDKRGAGKGVFVTVETEYTD-QDGELVAT 131 (132)
T ss_dssp EEEEEEEEEESS--BSSEEEEEEEEEEEEEEES-TTSEEEEEEEEEEE--CTTEEEEE
T ss_pred EEecCcEEEEeCCCCCCCEEEEEEEEEEEEEecCCCCEEEEEEEEEEEC-CCCCEEEe
Confidence 455679999999999999999999885441 223456678887 89999875
No 47
>PLN02647 acyl-CoA thioesterase
Probab=86.70 E-value=19 Score=34.85 Aligned_cols=105 Identities=12% Similarity=0.038 Sum_probs=72.9
Q ss_pred EeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEe-EEEEeecCCCCCEEEEEEEec
Q 027484 108 VVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRM-QVEIDHYPIWGEVVEIDTWVG 186 (223)
Q Consensus 108 ~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~-~Iei~r~P~~gD~I~I~TWv~ 186 (223)
.++..++++.|.+....||.||-++|..=+... .+ + ++.....+.-|-... .|++.++.+.||.|+|...+.
T Consensus 99 ~l~~~y~N~~G~l~gG~LLe~mD~~A~~~A~rh--~~-~----~~~~~~p~~vVTAsVD~i~F~~Pi~~g~~v~l~g~Vt 171 (437)
T PLN02647 99 ILREQYRNPWNEVRIGKLLEDLDALAGTISVKH--CS-D----DDSTTRPLLLVTASVDKIVLKKPIRVDVDLKIVGAVT 171 (437)
T ss_pred hhchhhcCCCCcEeHhHHHHHHHHHHHHHHHHH--hC-C----CcccCCcceEEEEEECcEEEcCCCcCCcEEEEEEEEE
Confidence 455556999999999999999987765443321 00 1 011112333443333 788999999999999999999
Q ss_pred ccCCceEEEEEEEEECCC-------CcEEEEEEEEEEEEec
Q 027484 187 ASGKNGMRRDWLIRSQAT-------GHIFARATRYIMYALE 220 (223)
Q Consensus 187 ~~~k~~~~R~f~I~d~~~-------Gevla~A~S~WVlVD~ 220 (223)
..++-++.-.-+++. ++ ..++..|.-+.|-+|.
T Consensus 172 ~vGrSSMEV~v~V~~-~~~~~~~~~~~~~~~a~FtfVA~D~ 211 (437)
T PLN02647 172 WVGRSSMEIQLEVIQ-PTKDESNTSDSVALTANFTFVARDS 211 (437)
T ss_pred EecCCeEEEEEEEEE-ccccCCCCcEEEEEEEEEEEEEEcC
Confidence 999998877666664 21 2357788888888886
No 48
>PRK08190 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase; Validated
Probab=85.76 E-value=6.7 Score=37.90 Aligned_cols=57 Identities=11% Similarity=0.066 Sum_probs=44.1
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEeccc--CCceEEEEEEEEECCCCcEEEEEEEEEEE
Q 027484 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGAS--GKNGMRRDWLIRSQATGHIFARATRYIMY 217 (223)
Q Consensus 160 WVL~r~~Iei~r~P~~gD~I~I~TWv~~~--~k~~~~R~f~I~d~~~Gevla~A~S~WVl 217 (223)
-+....++++.+|.+.||+|+++.|+.+. ++....-..++++ .+|+++..++.++++
T Consensus 83 ~~~~~~~~rF~~PV~~GDtl~~~~~V~~~~~~~~~v~~~~~~~n-q~G~~V~~g~~~~l~ 141 (466)
T PRK08190 83 TIYLGQSLRFRRPVRIGDTLTVTVTVREKDPEKRIVVLDCRCTN-QDGEVVITGTAEVIA 141 (466)
T ss_pred eEEEEEEEEEeCCcCCCCEEEEEEEEEEEECCCCEEEEEEEEEe-CCCCEEEEEEEEeec
Confidence 34567899999999999999999999543 2234445567787 889999999887765
No 49
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=84.16 E-value=12 Score=31.77 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=42.7
Q ss_pred EEEEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEE
Q 027484 159 IWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMY 217 (223)
Q Consensus 159 aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVl 217 (223)
.-+..-..+++.+|...||+|+++..+...++....-...++ .+|+++++|.-..+.
T Consensus 125 ~~~~~i~~irF~kPV~pGD~L~~ea~v~~~~~~~~~v~~~~~--v~g~~V~ege~~~~~ 181 (185)
T PRK04424 125 LALTGVANIRFKRPVKLGERVVAKAEVVRKKGNKYIVEVKSY--VGDELVFRGKFIMYR 181 (185)
T ss_pred EEEEEeeeEEEccCCCCCCEEEEEEEEEEccCCEEEEEEEEE--ECCEEEEEEEEEEEE
Confidence 344455699999999999999999999876654444445555 578998888876643
No 50
>PLN02322 acyl-CoA thioesterase
Probab=83.83 E-value=24 Score=29.36 Aligned_cols=102 Identities=7% Similarity=-0.089 Sum_probs=75.9
Q ss_pred EEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEE
Q 027484 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182 (223)
Q Consensus 103 y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~ 182 (223)
.+.+..|+....++.|.++=..++.++. .+...+... ...+...+=..+.++|.++.+.||.|+.+
T Consensus 28 ~~~~m~v~~~~~N~~G~vHGGv~atLaD-ta~g~A~~~-------------~~~~~~~vTiel~infLrpa~~G~~L~Ae 93 (154)
T PLN02322 28 VTGRLPVSPMCCQPFKVLHGGVSALIAE-SLASLGAHM-------------ASGFKRVAGIQLSINHLKSADLGDLVFAE 93 (154)
T ss_pred EEEEEECCHHHcCCCCCccHHHHHHHHH-HHHHHHHhh-------------ccCCCceEEEEEEEEEeccCCCCCEEEEE
Confidence 4566778888899999999999988884 443332110 01122357789999999999999999999
Q ss_pred EEecccCCceEEEEEEEEEC----C-CCcEEEEEEEEEEEE
Q 027484 183 TWVGASGKNGMRRDWLIRSQ----A-TGHIFARATRYIMYA 218 (223)
Q Consensus 183 TWv~~~~k~~~~R~f~I~d~----~-~Gevla~A~S~WVlV 218 (223)
-.+...++....=+-+|+|. + +|.+++.++.+-.++
T Consensus 94 a~vv~~Gr~~~~~ev~V~~~~~~~~~~~~lva~a~~T~~~~ 134 (154)
T PLN02322 94 ATPVSTGKTIQVWEVKLWKTTDKDKANKILISSSRVTLICN 134 (154)
T ss_pred EEEEecCCCEEEEEEEEEECCCCcccCCeEEEEEEEEEEEc
Confidence 99988888767666788872 1 378999999887654
No 51
>PLN02864 enoyl-CoA hydratase
Probab=83.09 E-value=8.2 Score=35.41 Aligned_cols=59 Identities=10% Similarity=0.025 Sum_probs=46.3
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEecccC--C--ceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 027484 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGASG--K--NGMRRDWLIRSQATGHIFARATRYIMYA 218 (223)
Q Consensus 160 WVL~r~~Iei~r~P~~gD~I~I~TWv~~~~--k--~~~~R~f~I~d~~~Gevla~A~S~WVlV 218 (223)
-|-....|+++|+...++.+++++++.... + ....-+..+.|..+|+++++..++.++-
T Consensus 94 lVHgeq~i~~~rPlp~~~~l~~~~~v~~v~dkG~ga~v~~~~~~~d~~~Ge~v~t~~st~~~R 156 (310)
T PLN02864 94 LLHGQQYIEIYKPIPSSASVRNKVSIAGLHDKGKAAILELETLSYEKDSGELLCMNRSTIFLR 156 (310)
T ss_pred eeeccceEEEECCCCCCCEEEEEEEEEEEEeCCCcEEEEEEEEEEeCCCCcEEEEEEEEEEEe
Confidence 455688999999999999999999997662 1 2246667777646899999998887764
No 52
>cd03452 MaoC_C MaoC_C The C-terminal hot dog fold of the MaoC (monoamine oxidase C) dehydratase regulatory protein. Orthologs of MaoC include PaaZ [Escherichia coli] and PaaN [Pseudomonas putida], which are putative ring-opening enzymes involved in phenylacetic acid degradation. The C-terminal domain of MaoC has sequence similarity to (R)-specific enoyl-CoA hydratase,Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. MaoC also has an N-terminal PutA domain like that found in the E. coli PutA proline dehydrogenase and other members of the aldehyde dehydrogenase family.
Probab=82.12 E-value=7.9 Score=30.87 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=40.5
Q ss_pred eEEEEeecCCCCCEEEEEEEecccC--C----ceEEEEEEEEECCCCcEEEEEEEEEEE
Q 027484 165 MQVEIDHYPIWGEVVEIDTWVGASG--K----NGMRRDWLIRSQATGHIFARATRYIMY 217 (223)
Q Consensus 165 ~~Iei~r~P~~gD~I~I~TWv~~~~--k----~~~~R~f~I~d~~~Gevla~A~S~WVl 217 (223)
.++++.+|...||+|+++..+.... + -......++.+ .+|+++.+++...++
T Consensus 81 ~~~rf~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~g~~V~~~~~~~~~ 138 (142)
T cd03452 81 ENLRFLEPVYPGDTIQVRLTCKRKIPRDGQDYGVVRWDAEVTN-QNGELVASYDILTLV 138 (142)
T ss_pred ceEEECCCCCCCCEEEEEEEEEEEeecCCCCcEEEEEEEEEEe-cCCCEEEEEEehHee
Confidence 3899999999999999999886552 1 24556677786 889999999866554
No 53
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=80.05 E-value=13 Score=31.84 Aligned_cols=56 Identities=20% Similarity=0.066 Sum_probs=47.0
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 027484 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIMYA 218 (223)
Q Consensus 160 WVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlV 218 (223)
..+...++++.++...| .+++++-....+|.+..|.-+++ .+|++++.|...+.--
T Consensus 34 ~~~~s~~~~fl~p~~~~-~~~~~v~~~r~Gr~~~~~~v~~~--q~~~~~~~a~~~f~~~ 89 (255)
T PF13622_consen 34 FDPHSLHVYFLRPVPPG-PVEYRVEVLRDGRSFSTRQVELS--QDGKVVATATASFGRP 89 (255)
T ss_dssp SEEEEEEEEESS--BSC-EEEEEEEEEEESSSEEEEEEEEE--ETTEEEEEEEEEEE--
T ss_pred CceEEEEeEeccccccC-CEEEEEEEeeCCCcEEEEEEEEE--ECCcCEEEEEEEEccC
Confidence 67889999999999999 99999999999999999999999 4788999998876543
No 54
>cd03445 Thioesterase_II_repeat2 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=79.52 E-value=17 Score=27.24 Aligned_cols=53 Identities=13% Similarity=-0.017 Sum_probs=46.6
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEE
Q 027484 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYI 215 (223)
Q Consensus 161 VL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~W 215 (223)
.+...+..+.+++..+..|++++-.-..++.+..|.-... .+|+++..+...+
T Consensus 40 ~~~s~~~~Fl~p~~~~~pv~~~v~~lr~GRs~~~~~V~~~--Q~g~~~~~a~~sf 92 (94)
T cd03445 40 VPHSLHSYFLRPGDPDQPIEYEVERLRDGRSFATRRVRAV--QNGKVIFTATASF 92 (94)
T ss_pred CeEEEEEEecCCCCCCCCEEEEEEEEECCCcEEEEEEEEE--ECCEEEEEEEEEE
Confidence 3567899999999999999999999999999999989888 4799999887765
No 55
>PF03756 AfsA: A-factor biosynthesis hotdog domain; InterPro: IPR005509 The AfsA family are key enzymes in A-factor biosynthesis, which is essential for streptomycin production and resistance. This domain is distantly related to the thioester dehydratase FabZ family and therefore has a Hotdog domain [].
Probab=78.32 E-value=30 Score=27.01 Aligned_cols=89 Identities=10% Similarity=0.201 Sum_probs=61.6
Q ss_pred CCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEEEecccCC-----
Q 027484 116 PDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGK----- 190 (223)
Q Consensus 116 ~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k----- 190 (223)
+.+|+..--++.=+-+++..-... .++.+ .+..+++..+.+++.++..+.-.+.|+.-+.....
T Consensus 39 ~~dh~~gmll~Ea~RQa~~~~~h~------~~~vp-----~~~~~~~~~l~~~f~~~~e~~~P~~~~~~~~~~~~~~~~~ 107 (132)
T PF03756_consen 39 PGDHVPGMLLLEAARQAGIALAHR------FYGVP-----LDHQFVLTSLDFTFSRFAELDVPADLTVRITCRDRRGGRP 107 (132)
T ss_pred CCCccChHHHHHHHHHHHHHhhcc------ccCCC-----CCceEEEEEEEEEEccccccCCCEEEEEEEEeccccCCcc
Confidence 345666666666666666655543 22221 34468999999999999888888888777653322
Q ss_pred ceEEEEEEEEECCCCcEEEEEEEEEEE
Q 027484 191 NGMRRDWLIRSQATGHIFARATRYIMY 217 (223)
Q Consensus 191 ~~~~R~f~I~d~~~Gevla~A~S~WVl 217 (223)
..+.....|+ .+|+++++++..|-|
T Consensus 108 ~~~~~~v~~~--q~g~~~a~~~~~~tc 132 (132)
T PF03756_consen 108 RGLRFRVTVS--QGGRVVATASMTFTC 132 (132)
T ss_pred ceEEEEEEEE--ECCEEEEEEEEEEEC
Confidence 3566667788 589999999988753
No 56
>COG2030 MaoC Acyl dehydratase [Lipid metabolism]
Probab=67.78 E-value=30 Score=28.32 Aligned_cols=56 Identities=9% Similarity=-0.042 Sum_probs=42.5
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEecccC-----CceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 027484 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASG-----KNGMRRDWLIRSQATGHIFARATRYIMYA 218 (223)
Q Consensus 161 VL~r~~Iei~r~P~~gD~I~I~TWv~~~~-----k~~~~R~f~I~d~~~Gevla~A~S~WVlV 218 (223)
.+.-..+++.+|.+-||+|..++++.+.. +....| .+.++ .+|+........+++.
T Consensus 95 ~~g~~~vRF~~PV~~Gdtl~~~~~v~~~~~~~~~G~v~~~-~~~~~-~~g~~v~~~~~~~~~~ 155 (159)
T COG2030 95 NLGGDEVRFVKPVFPGDTLRARVEVLDKRPSKSRGLVTLR-LETVN-QEGELVLTLEATVLVL 155 (159)
T ss_pred eccccceEecCCCCCCCEEEEEEEEEEeeecCCceEEEEE-EEEEc-cCCcEEEEEEEeEeEe
Confidence 34457899999999999999999996542 344455 34454 7899999999988875
No 57
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=62.94 E-value=33 Score=29.96 Aligned_cols=53 Identities=8% Similarity=-0.115 Sum_probs=47.2
Q ss_pred EEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 027484 162 VSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIM 216 (223)
Q Consensus 162 L~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WV 216 (223)
+..+++.+.+++..+..|++++..-..+|.+..|.-+.+ .+|++++.+...+.
T Consensus 46 ~~S~h~~Fl~~~~~~~pv~~~V~~lR~GRs~~~r~V~~~--Q~g~~~~~a~asf~ 98 (271)
T TIGR00189 46 PHSLHSYFVRAGDPKKPIIYDVERLRDGRSFITRRVKAV--QHGKTIFTLQASFQ 98 (271)
T ss_pred cceeEEEecCCCCCCCCEEEEEEEeeCCCceEEEEEEEE--ECCEEEEEEEEEcc
Confidence 457999999999999999999999999999999999998 57899999887654
No 58
>cd03448 HDE_HSD HDE_HSD The R-hydratase-like hot dog fold of the 17-beta-hydroxysteriod dehydrogenase (HSD), and Hydratase-Dehydrogenase-Epimerase (HDE) proteins. Other enzymes with this fold include MaoC dehydratase, and the fatty acid synthase beta subunit.
Probab=59.03 E-value=59 Score=25.47 Aligned_cols=47 Identities=9% Similarity=0.154 Sum_probs=33.0
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEE
Q 027484 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARAT 212 (223)
Q Consensus 161 VL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~ 212 (223)
.+.++.+++.+|...||+|+++.|..+ + .. .|++...++|+++..+.
T Consensus 71 ~~~~~~~rF~~PV~~gDtl~~~~~~~~--~-~v--~~~~~~~~~g~~v~~g~ 117 (122)
T cd03448 71 RFKAIKVRFSSPVFPGETLRTEMWKEG--N-RV--IFQTKVVERDVVVLSNG 117 (122)
T ss_pred eeEEEEEEEcCCccCCCEEEEEEEEeC--C-EE--EEEEEEccCCcEEEECC
Confidence 456779999999999999999999643 2 22 24443324677766554
No 59
>PRK13188 bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed
Probab=52.71 E-value=2.4e+02 Score=27.74 Aligned_cols=85 Identities=8% Similarity=-0.009 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEe-EEEEeecCCCCCEEEEEEEecc-cCCceEEEEEEEEE
Q 027484 124 SILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRM-QVEIDHYPIWGEVVEIDTWVGA-SGKNGMRRDWLIRS 201 (223)
Q Consensus 124 ~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~-~Iei~r~P~~gD~I~I~TWv~~-~~k~~~~R~f~I~d 201 (223)
-++.+|-+++...... +.+- ..+...++... .+++.++..-||+++++..+.. ..+.....+-+++
T Consensus 377 L~IEaMAQaagil~~~------~~~~-----~~g~lg~LlgI~kvKF~~PV~PGDtL~I~veI~~~~~~giv~f~g~~~- 444 (464)
T PRK13188 377 LQIEAMAQTGGILVLN------TVPD-----PENYSTYFMKIDKVKFRQKVVPGDTLIFKVELLSPIRRGICQMQGKAY- 444 (464)
T ss_pred HHHHHHHHHHHHHHhh------ccCC-----CCCceEEEEeccEEEEcCCCCCCCEEEEEEEEEEEecCCEEEEEEEEE-
Confidence 3466776666554321 1111 13434555554 9999999999999999998754 3233444556666
Q ss_pred CCCCcEEEEEEEEEEEEecc
Q 027484 202 QATGHIFARATRYIMYALEE 221 (223)
Q Consensus 202 ~~~Gevla~A~S~WVlVD~e 221 (223)
.+|+++++|....++.+.+
T Consensus 445 -vdGelVaeael~~~v~~~~ 463 (464)
T PRK13188 445 -VNGKLVCEAELMAQIVKKK 463 (464)
T ss_pred -ECCEEEEEEEEEEEEeccC
Confidence 5899999999888776543
No 60
>PLN02647 acyl-CoA thioesterase
Probab=51.71 E-value=2.4e+02 Score=27.47 Aligned_cols=104 Identities=6% Similarity=-0.018 Sum_probs=70.3
Q ss_pred EEEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEE
Q 027484 103 YRQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEID 182 (223)
Q Consensus 103 y~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~ 182 (223)
-+..+.+.+.+.+..|.+.=..+|+|+-|+|..-+.. ...+..-.+.=-.|++.+|...||.|.++
T Consensus 291 ~~~~~iv~P~d~N~~g~iFGG~LM~~~De~A~i~A~r--------------~a~~~~vt~svd~v~F~~PV~vGdil~l~ 356 (437)
T PLN02647 291 LENSLICQPQQRNIHGRIFGGFLMRRAFELAFSTAYA--------------FAGLRPYFLEVDHVDFLRPVDVGDFLRFK 356 (437)
T ss_pred eEEEEEeCccccCCCCcEeHHHHHHHHHHHHHHHHHH--------------HcCCceEEEEecceEecCccccCcEEEEE
Confidence 3455778899999999999999999999988854432 12333444555689999999999999975
Q ss_pred E-----EecccCCceEEEEE--EEEEC--CCCcEEEEEEEEEEEEec
Q 027484 183 T-----WVGASGKNGMRRDW--LIRSQ--ATGHIFARATRYIMYALE 220 (223)
Q Consensus 183 T-----Wv~~~~k~~~~R~f--~I~d~--~~Gevla~A~S~WVlVD~ 220 (223)
. .....++.++.-.- .+.+. .+++++..+.-+++.+|.
T Consensus 357 A~V~yt~~~s~g~~~i~veV~v~v~~~~~~~~~~~n~~~fTfva~d~ 403 (437)
T PLN02647 357 SCVLYTELENSEQPLINVEVVAHVTRPELRSSEVSNTFYFTFTVRPE 403 (437)
T ss_pred EEEEEEeEEecCceEEEEEEEEEEEcCCCCcceEEEEEEEEEEEecc
Confidence 4 43333333333222 22231 234567788888888774
No 61
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=50.91 E-value=1.1e+02 Score=23.20 Aligned_cols=54 Identities=7% Similarity=-0.082 Sum_probs=41.3
Q ss_pred EEEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEE
Q 027484 160 WVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRY 214 (223)
Q Consensus 160 WVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~ 214 (223)
-.-..+.|.+++++...|=+..+.+....+.-+..-.=+|++ ++|++++...-.
T Consensus 48 ~aSldhsi~Fh~~~~~~~W~l~~~~~~~~~~gr~~~~~~l~~-~~G~LvAs~~Q~ 101 (104)
T cd03444 48 SASLDHAIWFHRPFRADDWLLYEQRSPRAGNGRGLVEGRIFT-RDGELVASVAQE 101 (104)
T ss_pred eEeeeEEEEEeCCCCCCceEEEEEECccccCCeeEEEEEEEC-CCCCEEEEEEEe
Confidence 345578899999999888888888887666555655567897 899999987643
No 62
>PF07977 FabA: FabA-like domain; InterPro: IPR013114 Fatty acids biosynthesis occurs by two distinct pathways: in fungi, mammals and mycobacteria, type I or associative fatty-acid biosynthesis (type I FAS) is accomplished by multifunctional proteins in which distinct domains catalyse specific reactions; in plants and most bacteria, type II or dissociative fatty-acid biosynthesis (type II FAS) is accomplished by distinct enzymes []. Both FabZ and FabA catalyse the dehydration of beta-hydroxyacyl acyl carrier protein (ACP) to trans 2-enoyl ACP. However, FabZ and FabA display subtle differences in substrate specificities, whereby FabA is most effective on acyl ACPs of 9-11 carbon atoms in length, while FabZ is less specific. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. This enzyme domain has a HotDog fold.; PDB: 3D6X_F 2GLV_J 2GLM_E 2GLP_E 2GLL_C 1U1Z_F 3ESI_A 3AZB_T 3AZA_M 3AZ9_U ....
Probab=48.14 E-value=1.3e+02 Score=23.46 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=53.4
Q ss_pred cCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCC-EEEEEEEecc---cCCceEEE
Q 027484 120 ATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGE-VVEIDTWVGA---SGKNGMRR 195 (223)
Q Consensus 120 v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD-~I~I~TWv~~---~~k~~~~R 195 (223)
+--.-++..|.+++...+...+. ..+.+ ......+...--.+++.++..-|| .++++--... .......-
T Consensus 50 ~PGvl~iE~~aQ~~~~~~~~~~~-~~~~~-----~~~~~~~l~~~~~~kF~~~v~Pg~~~l~~~v~i~~~~~~~~~~~~~ 123 (138)
T PF07977_consen 50 MPGVLLIEAMAQAAGFLAGYSGL-AEGTG-----EARKVPFLAGIRNVKFRGPVYPGDKTLRIEVEIKKIRRREGGMAIF 123 (138)
T ss_dssp B-HHHHHHHHHHHHHHHHHHHCC-SSSCC-----CCCEEEEEEEEEEEEE-S-B-TTE-EEEEEEEEEEEEEEETTEEEE
T ss_pred CCeEhHHHHHHHHHHhHhhhccc-cccCC-----CcceEEEeccccEEEECccEeCCCcEEEEEEEEEEeecccCCEEEE
Confidence 34445666777777766644210 00111 011344566677899999999999 9999988877 56667777
Q ss_pred EEEEEECCCCcEEEEEE
Q 027484 196 DWLIRSQATGHIFARAT 212 (223)
Q Consensus 196 ~f~I~d~~~Gevla~A~ 212 (223)
+..++ .+|+.+++|+
T Consensus 124 ~~~~~--vdg~~v~~~~ 138 (138)
T PF07977_consen 124 DGTAY--VDGELVAEAE 138 (138)
T ss_dssp EEEEE--ETTEEEEEEE
T ss_pred EEEEE--ECCEEEEEEC
Confidence 78888 5899999874
No 63
>PF01575 MaoC_dehydratas: MaoC like domain; InterPro: IPR002539 The C terminus of the MaoC protein is found to share similarity with a wide variety of enzymes. All these enzymes contain multiple domains. This domain is found in parts of two enzymes that have been assigned dehydratase activities. A deletion mutant of the C-terminal 271 amino acids in Q02207 from SWISSPROT abolished its 2-enoyl-CoA hydratase activity, suggesting that this region may be a hydratase enzyme []. The maoC gene is part of a operon with maoA which is involved in the synthesis of monoamine oxidase [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3HMJ_H 2UV8_I 2VKZ_G 1PN4_C 1PN2_B 1S9C_K 3OML_A 1Q6W_B 2B3M_A 3K67_B ....
Probab=43.24 E-value=42 Score=25.78 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=25.6
Q ss_pred EEEEEEeEEEEeecCCCCCEEEEEEEecccC
Q 027484 159 IWVVSRMQVEIDHYPIWGEVVEIDTWVGASG 189 (223)
Q Consensus 159 aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~~ 189 (223)
...+.++.+++.+|...||+|.++.++.+..
T Consensus 75 ~~~~~~~~~rF~~PV~~gdtl~~~~~v~~~~ 105 (122)
T PF01575_consen 75 PARLGRFNVRFRAPVFPGDTLTAEVEVTEKR 105 (122)
T ss_dssp CEEEEEEEEEESS--BTTEEEEEEEEEEEEE
T ss_pred ceEEEEEEEEEeccccCCCEEEEEEEEEEEE
Confidence 4778899999999999999999999997643
No 64
>PLN02864 enoyl-CoA hydratase
Probab=41.90 E-value=1.5e+02 Score=27.17 Aligned_cols=49 Identities=8% Similarity=0.076 Sum_probs=35.3
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEE
Q 027484 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRY 214 (223)
Q Consensus 161 VL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~ 214 (223)
.+.++.+++.++..-||+|.++.|..+ +. .. |++...++|+++..|...
T Consensus 254 ~~~~~~~rF~~PV~pGdtl~~~~~~~~--~~-v~--~~~~~~~~g~~vl~G~a~ 302 (310)
T PLN02864 254 AVKTISGRFLLHVYPGETLVTEMWLEG--LR-VI--YQTKVKERNKAVLSGYVD 302 (310)
T ss_pred eEEEEEEEEcCCccCCCEEEEEEEeCC--CE-EE--EEEEEecCCeEEEEEEEE
Confidence 456789999999999999999999753 22 22 333323678888877654
No 65
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=40.69 E-value=1.3e+02 Score=27.10 Aligned_cols=54 Identities=11% Similarity=-0.100 Sum_probs=48.3
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEEE
Q 027484 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYIM 216 (223)
Q Consensus 161 VL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~WV 216 (223)
.+...++.+.++...+..|+.+...-..+|.++.|.-..+ .+|+++..+...+-
T Consensus 56 ~~hSlh~~Fl~pg~~~~pi~y~Ve~lRdGRSfstr~V~a~--Q~g~~if~~~~sF~ 109 (286)
T PRK10526 56 LVHSFHSYFLRPGDSQKPIIYDVETLRDGNSFSARRVAAI--QNGKPIFYMTASFQ 109 (286)
T ss_pred CceEEEEEcCCCCCCCCCEEEEEEEEeCCCceEeEEEEEE--ECCEEEEEEEEEec
Confidence 6778999999999999999999999889999999999998 58999999987764
No 66
>cd01289 FabA_like Domain of unknown function, appears to be related to a diverse group of beta-hydroxydecanoyl ACP dehydratases (FabA) and beta-hydroxyacyl ACP dehydratases (FabZ). This group appears to lack the conserved active site histidine of FabA and FabZ.
Probab=39.87 E-value=1.9e+02 Score=22.92 Aligned_cols=86 Identities=9% Similarity=-0.104 Sum_probs=55.2
Q ss_pred CCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEE-eEEEEeecCCC-CCEEEEEEEecccCC-ceEE
Q 027484 118 KTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSR-MQVEIDHYPIW-GEVVEIDTWVGASGK-NGMR 194 (223)
Q Consensus 118 G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r-~~Iei~r~P~~-gD~I~I~TWv~~~~k-~~~~ 194 (223)
+.+--..++.+|-+++..+.-.. .. . -...+...++.. -.++++++-.- ||+++++.-.....+ -...
T Consensus 45 ~~~P~~l~iE~mAQa~a~~~g~~-------~~-~-~~~~~~~g~l~~i~~~~f~~~v~p~Gd~l~i~~~~~~~~~~~~~~ 115 (138)
T cd01289 45 GRLPAWVGIEYMAQAIAAHGGLL-------AR-Q-QGNPPRPGFLLGSRKYEAHVDRFDLGSTLLIVVAELLQGDSGLGV 115 (138)
T ss_pred CCcchHHHHHHHHHHHHHHHHHH-------HH-h-cCCCCCcEEEEEEEEEEEEcceeCCCCeeEEEeeeeeeCCCcEEE
Confidence 67888888999988887775110 00 0 011333444444 48888877444 999999887755542 4455
Q ss_pred EEEEEEECCCCcEEEEEEEE
Q 027484 195 RDWLIRSQATGHIFARATRY 214 (223)
Q Consensus 195 R~f~I~d~~~Gevla~A~S~ 214 (223)
-+-+++ .+|+++++|+-.
T Consensus 116 ~~~~~~--v~~~~va~a~l~ 133 (138)
T cd01289 116 FECTIE--DQGGVLASGRLN 133 (138)
T ss_pred EEEEEE--ECCEEEEEEEEE
Confidence 556677 478999988754
No 67
>PF14765 PS-DH: Polyketide synthase dehydratase; PDB: 3KG7_D 3KG9_A 3KG8_B 3HRR_A 3HRQ_A 3EL6_A 3KG6_B 2VZ8_A 2VZ9_A.
Probab=32.90 E-value=3e+02 Score=23.63 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=44.3
Q ss_pred CCeEEEEEEe-EEEEee-cCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEE
Q 027484 156 NNLIWVVSRM-QVEIDH-YPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRY 214 (223)
Q Consensus 156 ~g~aWVL~r~-~Iei~r-~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~ 214 (223)
.+..|+-..+ .+.+.+ ++..++.+.+.+.....+.-...-+..++| ++|+++++.+..
T Consensus 225 ~~~~~lP~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~v~d-~~G~~~~~~~gl 284 (295)
T PF14765_consen 225 RGRVFLPVSIERIRIFRAPPPPGDRLYVYARLVKSDDDTITGDVTVFD-EDGRVVAELEGL 284 (295)
T ss_dssp TTSEEEEEEEEEEEESSS--SSTSEEEEEEEEESTTTTEEEEEEEEEE-TTSBEEEEEEEE
T ss_pred CCCEEcccEeCEEEEEeccCCCCCEEEEEEEEecccceEEEEEEEEEC-CCCCEEEEEccE
Confidence 4556666665 566664 568899999999997777778888999998 899999887653
No 68
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=31.79 E-value=2.8e+02 Score=24.06 Aligned_cols=53 Identities=6% Similarity=-0.135 Sum_probs=37.4
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEE
Q 027484 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRY 214 (223)
Q Consensus 161 VL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~ 214 (223)
.=..+.|.++++...+|=+..+++....+.-+..=.=+|+| ++|++++...-.
T Consensus 215 aSldhtv~fh~~~~~~~W~l~~~~s~~~~~Grg~~~~~l~d-~~G~lvAs~~Qe 267 (271)
T TIGR00189 215 ASLDHSIWFHRPFRADDWLLYKCSSPSASGSRGLVEGKIFT-RDGVLIASTVQE 267 (271)
T ss_pred EeeeeeEEEeCCCCCCeeEEEEEEeccccCCceEEEEEEEC-CCCCEEEEEEee
Confidence 34567788888767889888888885443333333357887 899999987643
No 69
>PF01947 DUF98: Protein of unknown function (DUF98); InterPro: IPR002800 This entry represents a group of proteins with no known function.; PDB: 2NWI_A.
Probab=31.62 E-value=2.3e+02 Score=23.14 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=21.9
Q ss_pred cCCceEEEEEEEEECCCCcEEEEEEEEEEE
Q 027484 188 SGKNGMRRDWLIRSQATGHIFARATRYIMY 217 (223)
Q Consensus 188 ~~k~~~~R~f~I~d~~~Gevla~A~S~WVl 217 (223)
.+.-...|.-.+.. +|+.++.|.|.|..
T Consensus 43 ~~~~~l~R~V~L~~--~~~~lvyA~S~~~~ 70 (149)
T PF01947_consen 43 IGDPVLRREVWLKG--SGEPLVYAESWWPI 70 (149)
T ss_dssp TT-EEEEEEEEEEE--TTEEEEEEEEEEEG
T ss_pred CCCceEEEEEEEEE--CCeeEEEEEEeCcH
Confidence 35567788888884 89999999998853
No 70
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=31.08 E-value=38 Score=35.51 Aligned_cols=58 Identities=26% Similarity=0.264 Sum_probs=39.7
Q ss_pred CCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEE
Q 027484 144 SNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIF 208 (223)
Q Consensus 144 g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevl 208 (223)
|.|||. .+...+ .|+-.-|-++||-+.||.|++.|.....++ -..|-.+|.+ -||+.+
T Consensus 637 GiGFGL-Q~I~~N----FVSGlIiL~ErpvkvGD~It~g~~~G~V~~-I~vRAT~I~~-fd~~~v 694 (835)
T COG3264 637 GLGFGL-QEIVSN----FVSGLIILFERPVKVGDTVTIGTVSGTVRK-ISVRATTIRT-FDRKEV 694 (835)
T ss_pred hhchhH-HHHHHH----hhhhhhhheecCcccCCEEEECCceEEEEE-EEeeEEEEEe-CCCCeE
Confidence 457775 444333 345566778999999999999995444444 4567788987 677544
No 71
>TIGR02447 yiiD_Cterm thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (PFAM model pfam00583). The function of this protein is unknown.
Probab=30.09 E-value=2.8e+02 Score=21.97 Aligned_cols=100 Identities=12% Similarity=0.019 Sum_probs=63.7
Q ss_pred EEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEE
Q 027484 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDT 183 (223)
Q Consensus 104 ~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~T 183 (223)
+.+..++. +.++.|.++=..++.++ +.+.-.+--+ .. ... ..+..-|....+|+|.+|.+ ++ +.++.
T Consensus 25 ~v~~pl~~-n~N~~G~~hGG~l~tla-d~a~~~~~~~-------~~-~~~-~~~~~~vt~~~~i~yl~P~~-~~-~~a~~ 91 (138)
T TIGR02447 25 RLSAPLAA-NINHHGTMFGGSLYTLA-TLSGWGLLWL-------RL-QEL-GIDGDIVIADSHIRYLAPVT-GD-PVANC 91 (138)
T ss_pred EEEeECCC-CcCCCCceehhHHHHHH-HHHHHHHHHH-------HH-HHh-CCCCcEEEEEeeeEEcCCcC-CC-eEEEE
Confidence 45566666 48999999999999999 4543211000 00 011 11123466789999999886 44 55444
Q ss_pred Ee-------------cccCCceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 027484 184 WV-------------GASGKNGMRRDWLIRSQATGHIFARATRYIMYA 218 (223)
Q Consensus 184 Wv-------------~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlV 218 (223)
-. ...+|....-+-+|++ +|++++.++.+++++
T Consensus 92 ~~~~~~~~~~~~~~l~~~gr~~~~~~~~v~~--~~~lvA~~~g~~~~~ 137 (138)
T TIGR02447 92 EAPDLESWEAFLATLQRGGKARVKLEAQISS--DGKLAATFSGEYVAL 137 (138)
T ss_pred EcCCHHHHHHHHHHHHhCCceEEEEEEEEEE--CCEEEEEEEEEEEEe
Confidence 44 2335555556677884 679999999999875
No 72
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=28.24 E-value=1.7e+02 Score=29.64 Aligned_cols=51 Identities=8% Similarity=-0.044 Sum_probs=38.5
Q ss_pred eEEEEeecCCCCCEEEEEEEecccC-----Cc-eEEEEEEEEECCCCcEEEEEEEEEE
Q 027484 165 MQVEIDHYPIWGEVVEIDTWVGASG-----KN-GMRRDWLIRSQATGHIFARATRYIM 216 (223)
Q Consensus 165 ~~Iei~r~P~~gD~I~I~TWv~~~~-----k~-~~~R~f~I~d~~~Gevla~A~S~WV 216 (223)
.++++.+|.+.||+|+++..+.... +. ...-...+.+ .+|+++.++....+
T Consensus 604 ~~~rF~~PV~~GDtl~~~~~V~e~~~~~~~~~g~v~~~~~v~n-q~G~~Vl~~~~~~l 660 (663)
T TIGR02278 604 ENLRFLEPVGPGDTIQVRLTVKRKTPRDEKTYGVVEWAAEVVN-QNGEPVATYDVLTL 660 (663)
T ss_pred ceEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEc-CCCCEEEEEEEHHh
Confidence 4899999999999999999885441 11 3455567776 78999998876554
No 73
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=28.10 E-value=1.9e+02 Score=29.36 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=38.2
Q ss_pred EEEEeecCCCCCEEEEEEEecccC-----C-ceEEEEEEEEECCCCcEEEEEEEEEE
Q 027484 166 QVEIDHYPIWGEVVEIDTWVGASG-----K-NGMRRDWLIRSQATGHIFARATRYIM 216 (223)
Q Consensus 166 ~Iei~r~P~~gD~I~I~TWv~~~~-----k-~~~~R~f~I~d~~~Gevla~A~S~WV 216 (223)
.+++.+|.+.||+|+++.-+.... + -...-...+.+ .+|+++..+....+
T Consensus 617 ~~rF~~PV~~GDtl~~~~~V~~~~~~~~~~~~~v~~~~~~~n-q~G~~V~~~~~~~l 672 (675)
T PRK11563 617 NLRFLTPVKPGDTIQVRLTCKRKTPRRQAPYGVVRWDVEVTN-QDGELVATYDILTL 672 (675)
T ss_pred eEEEcCCCCCCCEEEEEEEEEEEEecCCCCceEEEEEEEEEE-CCCCEEEEEEEHHh
Confidence 689999999999999999886542 1 13555677776 78999988876543
No 74
>PF02551 Acyl_CoA_thio: Acyl-CoA thioesterase; InterPro: IPR003703 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH). They consequently have the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. They may also be involved in the metabolic regulation of peroxisome proliferation. Thioesters play a central role in cells as they participate in metabolism, membrane synthesis, signal transduction, and gene regulation. Thioesterases catalyse the hydrolysis of thioesters to the thiol and carboxylic acid components. Many thioesterases have a hot dog fold, including YciA from Escherichia coli and its close sequence homologue HI0827 from Haemophilus influenzae (HiYciA) []. In Helicobacter pylori, YbgC also belongs to the hot-dog family of proteins, with a epsilongamma tetrameric arrangement []. YbgC proteins are bacterial acyl-CoA thioesterases associated with the Tol-Pal system. This system is important for cell envelope integrity and is part of the cell division machinery. However, the E. coli thioesterase II reveals a new tertiary fold: a 'double hot dog'. It has an internal repeat with a basic unit that is structurally similar to the recently described beta-hydroxydecanoyl thiol ester dehydrase []. ; GO: 0016291 acyl-CoA thioesterase activity, 0006637 acyl-CoA metabolic process; PDB: 1C8U_B 1TBU_B 3U0A_B.
Probab=25.17 E-value=3.8e+02 Score=21.90 Aligned_cols=99 Identities=13% Similarity=0.026 Sum_probs=54.6
Q ss_pred EEEeeecCcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEEEe
Q 027484 106 TVVVRSYEVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWV 185 (223)
Q Consensus 106 ~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~TWv 185 (223)
.+-++..+.=++...-+..++-|+.|.-...... .-.|++ ..+. -|=..+.|=++|+++..|-+.-.+..
T Consensus 31 ~vW~ra~~~~p~d~~~h~~~laY~SD~~~L~tal---~~H~~~------~~~~-~vSlDHs~wFHrpfr~ddWlLY~~~s 100 (131)
T PF02551_consen 31 QVWVRANGILPDDPRIHSCALAYASDFTLLDTAL---QPHGFG------FPKF-QVSLDHSMWFHRPFRADDWLLYAIES 100 (131)
T ss_dssp CCCCCCCSTS-TTHCCCCCHHHHHCCCCCGGGGG---CCGCCC------CCCE-EEEEEEEEEE-S--BTTS-EEEEEEE
T ss_pred hhhHHhCCCCCCchhHhHHHHHHHhHHhHHHhhh---cccccc------cccc-EEecceeEEEcCCCCCCCCEEEEEEc
Confidence 3445555555555555566677765543333221 011221 1222 23566788889999999999888887
Q ss_pred cccCCceEEEEEEEEECCCCcEEEEEEEE
Q 027484 186 GASGKNGMRRDWLIRSQATGHIFARATRY 214 (223)
Q Consensus 186 ~~~~k~~~~R~f~I~d~~~Gevla~A~S~ 214 (223)
.....-+..+.=++++..+|++++.+.-.
T Consensus 101 p~A~~~Rgl~~G~~f~~q~G~Lvas~~QE 129 (131)
T PF02551_consen 101 PSASGGRGLVRGRFFDTQDGELVASVVQE 129 (131)
T ss_dssp EEEETTEEEEEECCEEECTTEEEEEEEEE
T ss_pred CccccCcccccCceEecCCCCEEEEEecC
Confidence 54444445555566622899999987643
No 75
>PLN02868 acyl-CoA thioesterase family protein
Probab=23.75 E-value=2.8e+02 Score=26.01 Aligned_cols=53 Identities=9% Similarity=-0.112 Sum_probs=44.7
Q ss_pred EEEEeEEEEeecCCCCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEEE
Q 027484 161 VVSRMQVEIDHYPIWGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRYI 215 (223)
Q Consensus 161 VL~r~~Iei~r~P~~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~W 215 (223)
.+...++.+.+++..+..|++++..-..+|.+..|.-..+ .+|++++.+...+
T Consensus 182 ~~~s~~~~Fl~~~~~~~pv~~~V~~lr~Grs~~~r~v~~~--Q~g~~~~~~~~sf 234 (413)
T PLN02868 182 LVHSLHAYFLLVGDINLPIIYQVERIRDGHNFATRRVDAI--QKGKVIFTLFASF 234 (413)
T ss_pred CceEeeeeecCCCCCCCCEEEEEEEEcCCCceEeeEEEEE--ECCeeEEEEeecc
Confidence 3557788888888888889999999999999999999998 5789988887654
No 76
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=22.62 E-value=91 Score=15.87 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=16.0
Q ss_pred ecCcCCCCCcCHHHHHHHHHH
Q 027484 111 SYEVGPDKTATLESILNLFQE 131 (223)
Q Consensus 111 ~~E~D~~G~v~~s~Ll~~lQE 131 (223)
..+.|.+|.++...+..+++.
T Consensus 8 ~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 8 LFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHCCCCCCcEeHHHHHHHHHh
Confidence 346677788999988888764
No 77
>PF13622 4HBT_3: Thioesterase-like superfamily; PDB: 2PIM_A 3RQB_A 3CJY_A 3RD7_A 3BBJ_B.
Probab=22.04 E-value=4.9e+02 Score=22.02 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=35.3
Q ss_pred EEEeEEEEeecCC-CCCEEEEEEEecccCCceEEEEEEEEECCCCcEEEEEEEE
Q 027484 162 VSRMQVEIDHYPI-WGEVVEIDTWVGASGKNGMRRDWLIRSQATGHIFARATRY 214 (223)
Q Consensus 162 L~r~~Iei~r~P~-~gD~I~I~TWv~~~~k~~~~R~f~I~d~~~Gevla~A~S~ 214 (223)
-..+.|.+++.|. -+|=+.++++......-++.=+=+|+| ++|++++.+.-.
T Consensus 200 tld~ti~f~~~p~~~~~Wl~~~~~~~~~~~Gr~~~~~~l~d-~~G~lvA~~~Q~ 252 (255)
T PF13622_consen 200 TLDHTIHFHRLPFDGDEWLLLEARSPRAGNGRALMEGRLWD-EDGRLVASSRQE 252 (255)
T ss_dssp EEEEEEEECSHCCTTTS-EEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEEEE
T ss_pred cceeEEEEEeCCccCCceEEEEEEEeEeCCCEEEEEEEEEC-CCCCEEEEEEEE
Confidence 4566777655553 477788888886555455655677998 899999988654
No 78
>PRK01236 S-adenosylmethionine decarboxylase proenzyme; Provisional
Probab=21.38 E-value=1.5e+02 Score=23.96 Aligned_cols=33 Identities=15% Similarity=0.298 Sum_probs=28.4
Q ss_pred EEEEEeeecCcCCCCCcCHHHHHHHHHHHHHHH
Q 027484 104 RQTVVVRSYEVGPDKTATLESILNLFQETALNH 136 (223)
Q Consensus 104 ~~~~~Vr~~E~D~~G~v~~s~Ll~~lQEaA~~H 136 (223)
-..+.+..|+||++.--....+-+.|.+++...
T Consensus 6 G~Hllvdlygc~~~~L~D~~~l~~~l~~aa~~~ 38 (131)
T PRK01236 6 GLHIIADLYGVDPELIDRVEDIREILEGAVKYA 38 (131)
T ss_pred ceEEEEEEeCCChHHcCCHHHHHHHHHHHHHHC
Confidence 357899999999998889999999999888764
No 79
>PF09500 YiiD_Cterm: Putative thioesterase (yiiD_Cterm); InterPro: IPR012660 This entry consists of a broadly distributed uncharacterised domain found often as a standalone protein. The member from is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an N-terminal acetyltransferase domain (IPR000182 from INTERPRO). The function of these proteins are unknown. ; PDB: 1T82_C.
Probab=21.23 E-value=4.7e+02 Score=21.48 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=52.6
Q ss_pred CcCCCCCcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhC--CeEEEEEEeEEEEeecCCCCCEEEEEEEe-----
Q 027484 113 EVGPDKTATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRN--NLIWVVSRMQVEIDHYPIWGEVVEIDTWV----- 185 (223)
Q Consensus 113 E~D~~G~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~--g~aWVL~r~~Iei~r~P~~gD~I~I~TWv----- 185 (223)
.++..|.+-=.++...+--+++.-... .+.+. +---||.+-+|+|.+|.. +|-.-.-.++
T Consensus 39 N~N~~~T~FgGSl~slatLaGW~lv~l------------~l~e~~~~~~IVi~~~~i~Y~~Pv~-~d~~A~~~~~~~~~~ 105 (144)
T PF09500_consen 39 NINHHGTMFGGSLYSLATLAGWGLVWL------------QLKEAGLNGDIVIADSNIRYLKPVT-GDFTARCSLPEPEDW 105 (144)
T ss_dssp GB-TTSSB-HHHHHHHHHHHHHHHHHH------------HHHHHT---EEEEEEEEEEE-S----S--EEEEE-------
T ss_pred CcCCCCCcchHHHHHHHHHHHHHHHHH------------HHHHhCCCCcEEEEeCceEEcCCCC-CCcEEEEeccccchh
Confidence 667777777777777776666554432 11112 245789999999998765 5544444444
Q ss_pred -------cccCCceEEEEEEEEECCCCcEEEEEEEEEEEE
Q 027484 186 -------GASGKNGMRRDWLIRSQATGHIFARATRYIMYA 218 (223)
Q Consensus 186 -------~~~~k~~~~R~f~I~d~~~Gevla~A~S~WVlV 218 (223)
...+|.+..-.-+|++ +|+.+++-+..+|.+
T Consensus 106 ~~~~~~l~~~grari~l~~~i~~--~~~~~a~f~G~yv~l 143 (144)
T PF09500_consen 106 ERFLQTLARGGRARITLEVEIYS--GGELAAEFTGRYVAL 143 (144)
T ss_dssp S---GGGGCTS-EEEEEEEEEEE--TTEEEEEEEEEEEEE
T ss_pred HHHHHHHHcCCcEEEEEEEEEEE--CCEEEEEEEEEEEEE
Confidence 1224556666678884 788999999999875
No 80
>KOG4366 consensus Predicted thioesterase [General function prediction only]
Probab=20.65 E-value=31 Score=30.25 Aligned_cols=105 Identities=8% Similarity=-0.069 Sum_probs=76.1
Q ss_pred EEeeecCcCCCC-CcCHHHHHHHHHHHHHHHHHhhccCCCCCCcchhhhhCCeEEEEEEeEEEEeecCCCCCEEEEEEEe
Q 027484 107 VVVRSYEVGPDK-TATLESILNLFQETALNHVWMSGLLSNGFGATHGMMRNNLIWVVSRMQVEIDHYPIWGEVVEIDTWV 185 (223)
Q Consensus 107 ~~Vr~~E~D~~G-~v~~s~Ll~~lQEaA~~H~~~lgl~g~G~g~~~~l~~~g~aWVL~r~~Iei~r~P~~gD~I~I~TWv 185 (223)
...-+.|+|-.- |++|+.|++=+-=++.+|...- |. + ..+...+..-|..--.+.+.|..+.-++..|.|.+
T Consensus 55 g~cls~dlDtll~HmnNArYfrElDfAR~~~~~r~-----~l-~-~~lr~~~~~~v~~As~~ryrr~Irpfh~y~v~sRi 127 (213)
T KOG4366|consen 55 GLCLSTDLDTLLSHMNNARYFRELDFARVNFYCRT-----GL-Y-LMLRSKRGPYVQGASVFRYRREIRPFHPYSVSSRI 127 (213)
T ss_pred ceeecchHHHHHHHhhhhHHHHHhhHHHHHHHHHH-----hH-H-HHHHhcCCCeeechhhhhhhhhcCCCCccceeeEE
Confidence 334446666655 9999999999977778887653 32 1 24566677777777788899999999999999988
Q ss_pred cccC--CceEEEEEEEEECCCCcEEEEEEEEEEEEec
Q 027484 186 GASG--KNGMRRDWLIRSQATGHIFARATRYIMYALE 220 (223)
Q Consensus 186 ~~~~--k~~~~R~f~I~d~~~Gevla~A~S~WVlVD~ 220 (223)
.... .+++.-.|.+. .+|=+++-+.+..++.|.
T Consensus 128 I~WDekaiyle~rFv~~--sd~fvcala~~kq~l~dt 162 (213)
T KOG4366|consen 128 ICWDEKAIYLESRFVIL--SDGFVCALALTKQVLKDT 162 (213)
T ss_pred EEEchhhhhhhhheeec--cCceEeehHHHHHHHhcC
Confidence 6653 34554447776 688888888777766663
Done!