Query 027486
Match_columns 223
No_of_seqs 112 out of 1245
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:38:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 1E-39 2.2E-44 248.3 23.5 212 4-216 10-225 (231)
2 PRK09481 sspA stringent starva 100.0 6.5E-39 1.4E-43 248.5 22.3 195 4-205 11-205 (211)
3 PLN02473 glutathione S-transfe 100.0 2.5E-35 5.4E-40 229.0 19.2 193 3-201 2-210 (214)
4 PLN02395 glutathione S-transfe 100.0 2E-34 4.4E-39 224.0 19.4 194 1-202 1-210 (215)
5 PRK15113 glutathione S-transfe 100.0 1.7E-34 3.7E-39 224.2 18.8 191 3-205 5-211 (214)
6 PRK10542 glutathionine S-trans 100.0 2.5E-34 5.4E-39 221.3 17.8 189 4-202 1-197 (201)
7 PRK13972 GSH-dependent disulfi 100.0 3E-34 6.6E-39 223.0 18.0 186 4-201 2-204 (215)
8 PRK10357 putative glutathione 100.0 8.9E-34 1.9E-38 218.4 20.3 192 4-202 1-200 (202)
9 COG0625 Gst Glutathione S-tran 100.0 2E-33 4.3E-38 217.8 19.1 185 4-197 1-199 (211)
10 TIGR01262 maiA maleylacetoacet 100.0 2.5E-33 5.5E-38 217.1 18.4 190 5-203 1-205 (210)
11 TIGR00862 O-ClC intracellular 100.0 4.5E-32 9.8E-37 211.3 22.4 193 9-213 16-231 (236)
12 PRK11752 putative S-transferas 100.0 3.1E-32 6.7E-37 217.4 19.8 196 3-203 44-259 (264)
13 KOG0868 Glutathione S-transfer 100.0 1.9E-32 4E-37 196.7 15.0 191 3-202 5-207 (217)
14 PLN02378 glutathione S-transfe 100.0 5.4E-31 1.2E-35 204.3 19.3 186 9-208 17-205 (213)
15 PTZ00057 glutathione s-transfe 100.0 7E-31 1.5E-35 202.6 17.4 190 1-204 1-201 (205)
16 PLN02817 glutathione dehydroge 100.0 2.6E-30 5.7E-35 205.5 20.6 189 9-211 70-260 (265)
17 KOG0867 Glutathione S-transfer 100.0 4.2E-30 9.2E-35 200.4 17.8 198 3-206 2-213 (226)
18 PRK10387 glutaredoxin 2; Provi 100.0 6.9E-30 1.5E-34 197.8 16.2 178 4-196 1-207 (210)
19 KOG1695 Glutathione S-transfer 100.0 1.9E-28 4.1E-33 185.5 16.4 194 1-204 1-202 (206)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 5.2E-28 1.1E-32 187.0 16.0 176 5-196 1-206 (209)
21 KOG4420 Uncharacterized conser 99.9 4.2E-25 9.2E-30 167.7 14.1 202 3-208 26-293 (325)
22 PLN02907 glutamate-tRNA ligase 99.9 8.8E-23 1.9E-27 180.8 16.7 158 1-195 1-159 (722)
23 KOG1422 Intracellular Cl- chan 99.9 1.3E-21 2.8E-26 144.8 17.2 192 11-213 20-216 (221)
24 PF13417 GST_N_3: Glutathione 99.8 7.9E-21 1.7E-25 123.0 8.1 74 6-80 1-74 (75)
25 cd03059 GST_N_SspA GST_N famil 99.8 1.5E-19 3.2E-24 116.4 8.8 73 4-77 1-73 (73)
26 COG2999 GrxB Glutaredoxin 2 [P 99.8 7.5E-19 1.6E-23 126.6 11.9 182 4-197 1-208 (215)
27 KOG3029 Glutathione S-transfer 99.8 8.1E-19 1.7E-23 135.2 12.2 182 3-193 90-355 (370)
28 cd03052 GST_N_GDAP1 GST_N fami 99.8 2.1E-19 4.6E-24 115.5 7.7 70 4-74 1-73 (73)
29 cd03058 GST_N_Tau GST_N family 99.8 3.5E-19 7.5E-24 115.0 8.7 74 4-77 1-74 (74)
30 cd03061 GST_N_CLIC GST_N famil 99.8 4.6E-19 1E-23 117.4 8.3 69 10-79 20-88 (91)
31 cd03041 GST_N_2GST_N GST_N fam 99.8 5.1E-19 1.1E-23 115.1 8.0 73 4-77 2-77 (77)
32 cd03045 GST_N_Delta_Epsilon GS 99.8 9.8E-19 2.1E-23 112.9 8.0 71 4-75 1-74 (74)
33 cd03060 GST_N_Omega_like GST_N 99.8 1.2E-18 2.5E-23 111.6 8.1 69 4-73 1-70 (71)
34 cd03076 GST_N_Pi GST_N family, 99.8 5.7E-19 1.2E-23 113.7 6.4 72 3-75 1-72 (73)
35 cd03053 GST_N_Phi GST_N family 99.8 3E-18 6.4E-23 111.2 8.4 72 4-76 2-76 (76)
36 cd03050 GST_N_Theta GST_N fami 99.8 4E-18 8.7E-23 110.6 8.8 73 4-77 1-76 (76)
37 cd03048 GST_N_Ure2p_like GST_N 99.8 6.4E-18 1.4E-22 111.0 8.6 73 4-78 2-80 (81)
38 cd03056 GST_N_4 GST_N family, 99.7 6.1E-18 1.3E-22 108.8 7.6 70 4-74 1-73 (73)
39 cd03049 GST_N_3 GST_N family, 99.7 6.6E-18 1.4E-22 108.7 7.4 70 4-74 1-73 (73)
40 cd03044 GST_N_EF1Bgamma GST_N 99.7 8.6E-18 1.9E-22 108.8 7.8 70 5-75 2-74 (75)
41 cd03037 GST_N_GRX2 GST_N famil 99.7 8E-18 1.7E-22 107.7 7.4 70 4-75 1-71 (71)
42 cd03185 GST_C_Tau GST_C family 99.7 8.5E-17 1.8E-21 114.5 13.2 123 88-211 2-124 (126)
43 cd03039 GST_N_Sigma_like GST_N 99.7 5.9E-18 1.3E-22 108.6 6.1 71 4-75 1-72 (72)
44 cd03047 GST_N_2 GST_N family, 99.7 1.4E-17 3E-22 107.2 7.6 70 4-74 1-73 (73)
45 cd03055 GST_N_Omega GST_N fami 99.7 1.6E-17 3.5E-22 111.0 7.9 71 3-74 18-89 (89)
46 cd03051 GST_N_GTT2_like GST_N 99.7 1.4E-17 2.9E-22 107.4 7.1 70 4-74 1-74 (74)
47 cd03057 GST_N_Beta GST_N famil 99.7 2.4E-17 5.3E-22 107.2 8.2 73 4-78 1-77 (77)
48 cd03046 GST_N_GTT1_like GST_N 99.7 2.8E-17 6.1E-22 106.6 8.2 73 4-78 1-76 (76)
49 cd03042 GST_N_Zeta GST_N famil 99.7 3.3E-17 7.2E-22 105.4 7.5 70 4-74 1-73 (73)
50 KOG4244 Failed axon connection 99.7 2.1E-16 4.7E-21 121.2 12.6 177 5-193 47-273 (281)
51 cd03040 GST_N_mPGES2 GST_N fam 99.7 5.3E-17 1.1E-21 105.6 7.4 72 3-77 1-76 (77)
52 cd03075 GST_N_Mu GST_N family, 99.7 8.2E-17 1.8E-21 105.8 7.3 73 4-77 1-82 (82)
53 cd03080 GST_N_Metaxin_like GST 99.7 1.4E-16 3E-21 103.1 8.3 67 4-78 2-75 (75)
54 PF13409 GST_N_2: Glutathione 99.7 1E-16 2.2E-21 102.2 7.1 65 11-76 1-70 (70)
55 cd03077 GST_N_Alpha GST_N fami 99.7 1.6E-16 3.4E-21 103.8 8.1 72 3-78 1-77 (79)
56 PF02798 GST_N: Glutathione S- 99.7 5.3E-16 1.1E-20 100.5 7.9 71 5-75 2-76 (76)
57 cd03190 GST_C_ECM4_like GST_C 99.7 1.5E-15 3.2E-20 110.4 11.0 127 88-215 3-131 (142)
58 cd03186 GST_C_SspA GST_N famil 99.7 2E-15 4.4E-20 104.3 11.0 105 88-199 2-106 (107)
59 cd03038 GST_N_etherase_LigE GS 99.6 4.8E-16 1E-20 102.8 7.1 67 10-78 14-84 (84)
60 cd03184 GST_C_Omega GST_C fami 99.6 3E-15 6.6E-20 106.3 11.5 119 89-211 2-122 (124)
61 cd03196 GST_C_5 GST_C family, 99.6 5.1E-15 1.1E-19 103.7 10.9 110 86-200 3-115 (115)
62 cd00570 GST_N_family Glutathio 99.6 1.6E-15 3.5E-20 96.1 7.4 70 4-74 1-71 (71)
63 cd03043 GST_N_1 GST_N family, 99.6 1.9E-15 4E-20 97.2 7.4 66 8-74 6-73 (73)
64 cd03054 GST_N_Metaxin GST_N fa 99.6 8.2E-15 1.8E-19 93.9 7.5 65 4-76 1-72 (72)
65 cd03188 GST_C_Beta GST_C famil 99.6 1.6E-14 3.4E-19 100.8 9.4 104 89-200 2-114 (114)
66 COG0435 ECM4 Predicted glutath 99.5 1.5E-14 3.1E-19 111.7 7.4 196 3-201 51-285 (324)
67 cd03198 GST_C_CLIC GST_C famil 99.5 1E-13 2.2E-18 98.7 11.3 108 100-210 7-132 (134)
68 cd03209 GST_C_Mu GST_C family, 99.5 1.4E-13 3.1E-18 97.2 10.5 110 89-205 2-112 (121)
69 cd03203 GST_C_Lambda GST_C fam 99.5 3.5E-13 7.5E-18 95.1 12.0 114 86-210 1-119 (120)
70 cd03210 GST_C_Pi GST_C family, 99.5 1.1E-13 2.4E-18 98.5 9.4 109 89-204 3-114 (126)
71 cd03187 GST_C_Phi GST_C family 99.5 1.6E-13 3.4E-18 96.3 9.4 106 89-200 2-118 (118)
72 cd03182 GST_C_GTT2_like GST_C 99.5 2.7E-13 5.9E-18 95.1 10.6 104 86-196 1-117 (117)
73 cd03178 GST_C_Ure2p_like GST_C 99.5 7.6E-14 1.6E-18 97.3 7.4 104 90-200 2-112 (113)
74 cd03181 GST_C_EFB1gamma GST_C 99.5 1.7E-13 3.7E-18 96.9 8.6 110 90-204 2-118 (123)
75 cd03201 GST_C_DHAR GST_C famil 99.5 4.3E-13 9.4E-18 94.6 10.5 105 102-210 12-118 (121)
76 cd03189 GST_C_GTT1_like GST_C 99.5 3.6E-13 7.7E-18 94.8 9.8 103 84-194 2-119 (119)
77 cd03177 GST_C_Delta_Epsilon GS 99.5 2E-13 4.2E-18 96.1 8.4 105 89-200 2-110 (118)
78 cd03208 GST_C_Alpha GST_C fami 99.5 4.7E-13 1E-17 96.6 10.2 109 89-205 3-118 (137)
79 cd03191 GST_C_Zeta GST_C famil 99.5 2.7E-13 5.8E-18 95.8 8.1 107 88-202 2-119 (121)
80 cd03180 GST_C_2 GST_C family, 99.5 6.8E-13 1.5E-17 91.9 9.3 100 89-196 2-110 (110)
81 KOG2903 Predicted glutathione 99.4 2.1E-13 4.5E-18 104.4 6.8 204 3-210 37-296 (319)
82 cd03183 GST_C_Theta GST_C fami 99.4 1.4E-12 3.1E-17 92.7 8.8 104 90-200 2-120 (126)
83 cd03200 GST_C_JTV1 GST_C famil 99.4 1.8E-12 3.8E-17 87.7 8.4 95 70-192 1-95 (96)
84 cd03207 GST_C_8 GST_C family, 99.4 1.1E-12 2.5E-17 89.9 6.7 76 117-201 26-101 (103)
85 cd03195 GST_C_4 GST_C family, 99.4 4.3E-12 9.3E-17 88.7 9.5 104 88-202 2-113 (114)
86 PF00043 GST_C: Glutathione S- 99.4 2.3E-12 5E-17 86.9 7.5 71 118-194 25-95 (95)
87 cd03206 GST_C_7 GST_C family, 99.3 3.1E-12 6.6E-17 87.3 6.2 71 118-196 30-100 (100)
88 KOG3027 Mitochondrial outer me 99.3 9.7E-11 2.1E-15 87.0 14.3 173 10-193 32-248 (257)
89 PF13410 GST_C_2: Glutathione 99.3 4.2E-12 9E-17 80.5 5.8 67 118-189 3-69 (69)
90 cd03079 GST_N_Metaxin2 GST_N f 99.3 7.6E-12 1.6E-16 79.7 6.7 60 10-76 15-74 (74)
91 TIGR02190 GlrX-dom Glutaredoxi 99.3 2.2E-11 4.7E-16 79.4 7.2 71 3-74 9-79 (79)
92 PRK10638 glutaredoxin 3; Provi 99.3 2.7E-11 5.8E-16 79.7 7.5 71 1-72 1-72 (83)
93 cd03179 GST_C_1 GST_C family, 99.3 2.4E-11 5.2E-16 83.3 7.2 95 89-191 2-105 (105)
94 cd03204 GST_C_GDAP1 GST_C fami 99.2 2.3E-11 5E-16 84.0 6.7 74 118-196 26-111 (111)
95 cd03192 GST_C_Sigma_like GST_C 99.2 7.3E-11 1.6E-15 80.9 8.4 96 89-190 2-104 (104)
96 cd03194 GST_C_3 GST_C family, 99.2 1.6E-10 3.4E-15 80.7 9.0 71 120-201 40-113 (114)
97 PF14497 GST_C_3: Glutathione 99.2 4.8E-11 1E-15 81.2 4.7 95 87-192 3-99 (99)
98 cd03029 GRX_hybridPRX5 Glutare 99.1 3.2E-10 6.9E-15 72.5 7.6 71 3-74 2-72 (72)
99 cd00299 GST_C_family Glutathio 99.1 2.1E-10 4.6E-15 77.6 6.7 92 94-190 2-100 (100)
100 cd03202 GST_C_etherase_LigE GS 99.1 5.8E-10 1.3E-14 79.0 7.0 68 119-192 56-123 (124)
101 cd03193 GST_C_Metaxin GST_C fa 99.1 7.7E-10 1.7E-14 73.5 7.2 68 121-191 19-88 (88)
102 KOG3028 Translocase of outer m 99.1 1.1E-08 2.5E-13 80.9 14.7 172 11-192 16-233 (313)
103 cd03078 GST_N_Metaxin1_like GS 99.0 1.3E-09 2.8E-14 69.7 7.6 59 10-76 14-72 (73)
104 cd03027 GRX_DEP Glutaredoxin ( 98.9 4.6E-09 1E-13 67.2 6.6 68 3-71 2-70 (73)
105 cd03205 GST_C_6 GST_C family, 98.9 1.1E-08 2.5E-13 69.3 8.4 68 115-190 31-98 (98)
106 PRK10329 glutaredoxin-like pro 98.9 9E-09 2E-13 67.2 6.3 61 3-64 2-62 (81)
107 cd02066 GRX_family Glutaredoxi 98.8 2E-08 4.3E-13 63.5 7.1 69 3-72 1-70 (72)
108 cd03197 GST_C_mPGES2 GST_C fam 98.8 2.5E-08 5.4E-13 71.9 7.9 65 122-192 80-145 (149)
109 cd02976 NrdH NrdH-redoxin (Nrd 98.8 1.5E-08 3.3E-13 64.3 6.0 62 3-65 1-63 (73)
110 TIGR02196 GlrX_YruB Glutaredox 98.8 2.4E-08 5.1E-13 63.6 6.7 69 4-73 2-73 (74)
111 cd03418 GRX_GRXb_1_3_like Glut 98.8 3.2E-08 6.9E-13 63.5 7.0 71 3-73 1-72 (75)
112 PF14834 GST_C_4: Glutathione 98.8 1.5E-07 3.2E-12 64.0 10.0 105 86-201 1-113 (117)
113 cd03211 GST_C_Metaxin2 GST_C f 98.7 1.9E-08 4.1E-13 71.4 4.6 74 116-191 52-126 (126)
114 cd03212 GST_C_Metaxin1_3 GST_C 98.7 6.1E-08 1.3E-12 69.8 6.4 74 117-192 60-134 (137)
115 TIGR02200 GlrX_actino Glutared 98.7 1E-07 2.2E-12 61.3 6.9 70 3-73 1-75 (77)
116 TIGR02181 GRX_bact Glutaredoxi 98.7 1.3E-07 2.7E-12 61.4 7.0 70 4-74 1-71 (79)
117 COG0695 GrxC Glutaredoxin and 98.6 1.9E-07 4.2E-12 60.7 7.3 69 3-72 2-73 (80)
118 TIGR02194 GlrX_NrdH Glutaredox 98.6 1.3E-07 2.7E-12 60.3 5.7 57 4-61 1-57 (72)
119 PRK11200 grxA glutaredoxin 1; 98.5 6.2E-07 1.3E-11 59.1 7.6 76 3-78 2-84 (85)
120 PF00462 Glutaredoxin: Glutare 98.5 1.3E-07 2.9E-12 57.9 3.9 59 4-63 1-60 (60)
121 TIGR02189 GlrX-like_plant Glut 98.5 1.2E-06 2.6E-11 59.4 8.6 69 3-72 9-81 (99)
122 cd03419 GRX_GRXh_1_2_like Glut 98.5 1.3E-06 2.9E-11 56.9 8.1 72 3-75 1-76 (82)
123 PHA03050 glutaredoxin; Provisi 98.4 1.6E-06 3.4E-11 59.7 8.2 68 3-71 14-88 (108)
124 TIGR02183 GRXA Glutaredoxin, G 98.4 2.6E-06 5.7E-11 56.2 7.8 75 4-78 2-83 (86)
125 TIGR00365 monothiol glutaredox 98.2 6.9E-06 1.5E-10 55.4 7.1 69 3-72 13-87 (97)
126 TIGR02180 GRX_euk Glutaredoxin 98.2 1.3E-05 2.7E-10 52.4 8.2 70 4-74 1-76 (84)
127 cd03028 GRX_PICOT_like Glutare 98.2 9.6E-06 2.1E-10 54.0 7.2 69 3-72 9-83 (90)
128 PF10568 Tom37: Outer mitochon 98.1 2.3E-05 5E-10 49.7 7.2 55 11-73 13-71 (72)
129 PRK12759 bifunctional gluaredo 97.9 3.7E-05 8E-10 65.4 8.0 70 1-71 1-79 (410)
130 PRK10824 glutaredoxin-4; Provi 97.7 0.00022 4.7E-09 49.5 7.1 69 3-72 16-90 (115)
131 cd03031 GRX_GRX_like Glutaredo 97.7 0.00026 5.7E-09 51.3 7.3 69 4-72 2-80 (147)
132 COG4545 Glutaredoxin-related p 97.6 0.00022 4.7E-09 44.5 5.3 64 1-64 1-77 (85)
133 KOG1752 Glutaredoxin and relat 97.5 0.00069 1.5E-08 46.1 7.0 69 3-72 15-87 (104)
134 PF04399 Glutaredoxin2_C: Glut 97.4 0.00069 1.5E-08 48.1 6.8 68 119-196 57-124 (132)
135 KOG1147 Glutamyl-tRNA syntheta 97.3 0.00038 8.1E-09 59.6 5.3 119 58-200 43-162 (712)
136 cd02973 TRX_GRX_like Thioredox 97.2 0.0013 2.8E-08 40.8 5.4 58 3-64 2-64 (67)
137 PTZ00062 glutaredoxin; Provisi 97.2 0.0019 4.1E-08 49.6 7.2 68 3-71 114-187 (204)
138 cd03036 ArsC_like Arsenate Red 97.0 0.0016 3.4E-08 45.1 5.0 33 4-36 1-33 (111)
139 cd02977 ArsC_family Arsenate R 97.0 0.001 2.2E-08 45.4 4.0 32 4-35 1-32 (105)
140 PRK10026 arsenate reductase; P 97.0 0.0012 2.5E-08 47.6 4.2 34 1-34 1-34 (141)
141 PRK01655 spxA transcriptional 97.0 0.0012 2.7E-08 47.0 4.2 32 4-35 2-33 (131)
142 cd03032 ArsC_Spx Arsenate Redu 96.9 0.0027 5.8E-08 44.2 5.2 32 4-35 2-33 (115)
143 cd03199 GST_C_GRX2 GST_C famil 96.8 0.0047 1E-07 43.5 6.1 67 120-196 59-125 (128)
144 PRK13344 spxA transcriptional 96.7 0.0047 1E-07 44.1 5.6 32 4-35 2-33 (132)
145 TIGR01617 arsC_related transcr 96.6 0.003 6.5E-08 44.1 4.0 32 4-35 1-32 (117)
146 PRK12559 transcriptional regul 96.6 0.0051 1.1E-07 43.8 5.2 32 4-35 2-33 (131)
147 cd03033 ArsC_15kD Arsenate Red 96.5 0.0042 9.1E-08 43.1 4.1 33 3-35 1-33 (113)
148 cd03035 ArsC_Yffb Arsenate Red 96.4 0.0054 1.2E-07 41.9 3.9 32 4-35 1-32 (105)
149 COG1393 ArsC Arsenate reductas 96.3 0.0073 1.6E-07 42.1 4.1 31 4-34 3-33 (117)
150 PF05768 DUF836: Glutaredoxin- 96.3 0.018 4E-07 37.2 5.8 55 3-60 1-57 (81)
151 TIGR00412 redox_disulf_2 small 95.9 0.04 8.7E-07 35.1 6.1 54 4-63 3-60 (76)
152 TIGR01616 nitro_assoc nitrogen 95.9 0.014 3E-07 41.3 4.2 32 3-34 2-33 (126)
153 PRK10853 putative reductase; P 95.9 0.014 3.1E-07 40.8 4.1 31 4-34 2-32 (118)
154 PF11287 DUF3088: Protein of u 95.8 0.037 7.9E-07 37.8 5.7 68 11-78 23-108 (112)
155 cd03030 GRX_SH3BGR Glutaredoxi 95.4 0.1 2.2E-06 34.7 6.8 67 4-71 2-79 (92)
156 cd03034 ArsC_ArsC Arsenate Red 95.4 0.025 5.3E-07 39.1 3.9 31 4-34 1-31 (112)
157 TIGR00014 arsC arsenate reduct 95.3 0.027 5.9E-07 39.1 3.9 32 4-35 1-32 (114)
158 TIGR00411 redox_disulf_1 small 95.3 0.079 1.7E-06 33.8 5.9 56 4-61 3-62 (82)
159 COG0278 Glutaredoxin-related p 94.9 0.13 2.8E-06 34.4 6.0 65 8-73 26-92 (105)
160 cd01659 TRX_superfamily Thiore 94.8 0.074 1.6E-06 31.2 4.5 54 4-58 1-59 (69)
161 PHA02125 thioredoxin-like prot 94.7 0.1 2.3E-06 33.0 5.1 51 4-58 2-52 (75)
162 cd03026 AhpF_NTD_C TRX-GRX-lik 94.2 0.15 3.3E-06 33.6 5.2 58 3-64 15-77 (89)
163 PF11801 Tom37_C: Tom37 C-term 92.4 0.35 7.5E-06 36.0 5.1 38 125-163 112-153 (168)
164 PF04908 SH3BGR: SH3-binding, 92.0 0.64 1.4E-05 31.3 5.6 66 4-70 3-84 (99)
165 PF13192 Thioredoxin_3: Thiore 91.6 0.69 1.5E-05 29.3 5.2 57 4-66 3-63 (76)
166 PF03960 ArsC: ArsC family; I 89.6 0.44 9.6E-06 32.7 3.2 29 7-35 1-29 (110)
167 KOG0911 Glutaredoxin-related p 84.1 2.9 6.3E-05 32.4 5.1 65 8-73 150-215 (227)
168 PF00085 Thioredoxin: Thioredo 83.3 10 0.00022 24.7 8.1 70 4-75 21-102 (103)
169 TIGR01295 PedC_BrcD bacterioci 82.7 6.2 0.00013 27.5 6.1 32 4-35 27-62 (122)
170 cd02953 DsbDgamma DsbD gamma f 79.2 7.7 0.00017 25.8 5.5 52 4-57 15-77 (104)
171 cd02947 TRX_family TRX family; 77.4 14 0.0003 23.1 6.2 54 4-61 14-74 (93)
172 TIGR03143 AhpF_homolog putativ 77.3 5.6 0.00012 35.5 5.5 57 3-64 479-541 (555)
173 cd02984 TRX_PICOT TRX domain, 77.1 15 0.00033 23.7 6.5 57 4-62 18-80 (97)
174 cd02949 TRX_NTR TRX domain, no 75.6 14 0.00031 24.2 6.0 58 4-63 17-80 (97)
175 PRK15317 alkyl hydroperoxide r 73.8 3.1 6.8E-05 36.7 3.0 72 3-76 119-197 (517)
176 KOG1668 Elongation factor 1 be 73.6 2 4.3E-05 33.4 1.5 59 127-197 10-68 (231)
177 PRK09381 trxA thioredoxin; Pro 73.6 20 0.00043 23.9 6.4 57 5-63 26-88 (109)
178 cd02975 PfPDO_like_N Pyrococcu 73.1 13 0.00027 25.5 5.3 52 4-57 25-80 (113)
179 cd02989 Phd_like_TxnDC9 Phosdu 73.0 20 0.00044 24.4 6.3 58 5-64 27-89 (113)
180 TIGR03140 AhpF alkyl hydropero 72.8 3.2 6.9E-05 36.7 2.7 72 3-76 120-198 (515)
181 cd02963 TRX_DnaJ TRX domain, D 70.0 22 0.00048 24.1 6.0 57 4-62 28-91 (111)
182 TIGR02187 GlrX_arch Glutaredox 68.8 23 0.00051 27.2 6.5 53 4-58 137-192 (215)
183 TIGR01068 thioredoxin thioredo 64.6 35 0.00076 21.9 6.2 55 5-61 19-79 (101)
184 PTZ00051 thioredoxin; Provisio 64.4 33 0.00071 22.2 5.8 57 4-62 22-83 (98)
185 cd02951 SoxW SoxW family; SoxW 63.3 26 0.00057 24.1 5.4 16 4-19 18-33 (125)
186 cd03003 PDI_a_ERdj5_N PDIa fam 63.1 35 0.00077 22.3 5.8 56 4-61 22-83 (101)
187 KOG3425 Uncharacterized conser 62.2 24 0.00053 24.6 4.7 68 9-76 42-122 (128)
188 PRK10996 thioredoxin 2; Provis 60.8 51 0.0011 23.4 6.6 58 4-63 56-119 (139)
189 cd02959 ERp19 Endoplasmic reti 57.7 53 0.0011 22.6 6.0 59 5-64 24-91 (117)
190 TIGR02681 phage_pRha phage reg 57.2 9 0.00019 26.2 2.0 26 53-78 2-28 (108)
191 PHA03075 glutaredoxin-like pro 57.1 19 0.00042 24.9 3.5 68 1-77 1-70 (123)
192 TIGR02187 GlrX_arch Glutaredox 56.1 41 0.0009 25.8 5.8 56 4-61 23-88 (215)
193 PHA02278 thioredoxin-like prot 55.8 60 0.0013 21.8 6.6 56 6-63 20-85 (103)
194 PF11417 Inhibitor_G39P: Loade 55.8 38 0.00083 21.2 4.5 37 65-103 5-43 (71)
195 PF13728 TraF: F plasmid trans 55.0 43 0.00093 26.0 5.7 52 4-57 124-188 (215)
196 cd02993 PDI_a_APS_reductase PD 54.4 57 0.0012 21.8 5.7 53 4-57 25-83 (109)
197 PF09635 MetRS-N: MetRS-N bind 52.8 10 0.00022 26.5 1.7 27 52-78 35-63 (122)
198 PF01323 DSBA: DSBA-like thior 52.1 21 0.00044 26.6 3.5 36 3-38 1-41 (193)
199 cd02956 ybbN ybbN protein fami 51.9 62 0.0013 20.8 6.3 56 5-62 17-78 (96)
200 cd02948 TRX_NDPK TRX domain, T 50.2 72 0.0016 21.0 6.2 55 5-62 22-83 (102)
201 cd02962 TMX2 TMX2 family; comp 49.2 77 0.0017 23.1 6.0 61 4-64 51-122 (152)
202 KOG2824 Glutaredoxin-related p 48.4 30 0.00066 27.8 3.9 57 15-72 150-211 (281)
203 COG3019 Predicted metal-bindin 48.4 28 0.00061 25.0 3.4 72 3-77 27-104 (149)
204 cd02955 SSP411 TRX domain, SSP 47.7 95 0.002 21.7 6.2 60 6-66 21-97 (124)
205 cd02997 PDI_a_PDIR PDIa family 47.5 76 0.0016 20.5 6.2 57 4-61 21-86 (104)
206 COG3118 Thioredoxin domain-con 46.8 1.6E+02 0.0035 24.2 8.0 72 5-78 48-131 (304)
207 cd02952 TRP14_like Human TRX-r 45.2 1E+02 0.0022 21.4 6.2 56 10-66 38-106 (119)
208 cd02957 Phd_like Phosducin (Ph 45.1 57 0.0012 22.0 4.6 58 5-65 29-91 (113)
209 cd03004 PDI_a_ERdj5_C PDIa fam 43.5 92 0.002 20.3 5.7 52 4-57 23-78 (104)
210 cd02996 PDI_a_ERp44 PDIa famil 41.8 85 0.0018 20.8 5.0 56 4-61 22-89 (108)
211 PRK09266 hypothetical protein; 41.7 43 0.00094 26.7 4.1 57 21-78 200-259 (266)
212 PF13098 Thioredoxin_2: Thiore 40.6 32 0.00069 22.9 2.8 20 4-23 9-28 (112)
213 cd02987 Phd_like_Phd Phosducin 40.2 1.4E+02 0.003 22.2 6.3 57 6-65 89-150 (175)
214 cd03000 PDI_a_TMX3 PDIa family 39.8 1.1E+02 0.0023 20.1 5.6 52 4-57 19-77 (104)
215 PF04564 U-box: U-box domain; 39.3 70 0.0015 19.9 3.9 26 52-78 15-40 (73)
216 PF04134 DUF393: Protein of un 39.1 1E+02 0.0022 20.7 5.1 69 6-76 1-77 (114)
217 cd03021 DsbA_GSTK DsbA family, 37.0 48 0.001 25.3 3.5 34 3-36 2-39 (209)
218 PF06110 DUF953: Eukaryotic pr 37.0 28 0.00061 24.3 2.0 60 8-68 34-107 (119)
219 cd02950 TxlA TRX-like protein 35.9 1.6E+02 0.0035 20.9 6.2 57 5-63 25-90 (142)
220 cd02994 PDI_a_TMX PDIa family, 35.7 1.2E+02 0.0027 19.5 5.6 52 4-57 20-76 (101)
221 cd03005 PDI_a_ERp46 PDIa famil 35.5 1.2E+02 0.0026 19.4 6.0 56 4-61 20-84 (102)
222 PF09413 DUF2007: Domain of un 34.7 42 0.00091 20.3 2.3 31 5-35 2-32 (67)
223 TIGR03759 conj_TIGR03759 integ 34.7 1.1E+02 0.0024 23.5 4.9 53 4-57 137-192 (200)
224 cd02972 DsbA_family DsbA famil 34.5 52 0.0011 20.7 3.0 22 4-25 1-22 (98)
225 cd03020 DsbA_DsbC_DsbG DsbA fa 34.3 42 0.00091 25.3 2.8 21 4-24 81-101 (197)
226 cd03002 PDI_a_MPD1_like PDI fa 33.4 1.4E+02 0.003 19.5 6.3 53 4-57 22-79 (109)
227 cd03006 PDI_a_EFP1_N PDIa fami 33.3 1.1E+02 0.0024 20.9 4.5 52 4-57 33-89 (113)
228 KOG2456 Aldehyde dehydrogenase 33.1 2.8E+02 0.0061 24.0 7.4 130 8-160 185-321 (477)
229 cd02999 PDI_a_ERp44_like PDIa 32.5 1.5E+02 0.0032 19.5 5.5 56 4-60 22-82 (100)
230 PRK11657 dsbG disulfide isomer 32.5 45 0.00099 26.5 2.8 20 4-23 121-140 (251)
231 TIGR01126 pdi_dom protein disu 32.4 64 0.0014 20.7 3.2 52 4-57 17-74 (102)
232 cd02954 DIM1 Dim1 family; Dim1 31.6 1.4E+02 0.003 20.6 4.7 56 6-63 20-81 (114)
233 KOG2501 Thioredoxin, nucleored 31.6 1.4E+02 0.0031 21.9 4.9 34 5-38 37-78 (157)
234 PTZ00102 disulphide isomerase; 31.3 2.7E+02 0.0058 24.1 7.6 72 4-77 53-138 (477)
235 PRK13947 shikimate kinase; Pro 31.2 69 0.0015 23.2 3.5 32 1-32 1-32 (171)
236 cd02961 PDI_a_family Protein D 31.1 1.4E+02 0.003 18.7 5.6 52 4-57 19-76 (101)
237 COG2761 FrnE Predicted dithiol 30.6 1E+02 0.0022 24.2 4.3 26 3-28 7-34 (225)
238 cd02985 TRX_CDSP32 TRX family, 29.7 1.7E+02 0.0036 19.3 5.9 58 5-63 20-84 (103)
239 cd03022 DsbA_HCCA_Iso DsbA fam 28.6 84 0.0018 23.2 3.6 32 4-35 1-36 (192)
240 PF15608 PELOTA_1: PELOTA RNA 28.4 98 0.0021 20.9 3.4 29 5-33 59-87 (100)
241 PF14595 Thioredoxin_9: Thiore 27.5 23 0.00051 25.0 0.3 52 4-57 45-102 (129)
242 PRK10877 protein disulfide iso 26.8 68 0.0015 25.1 2.8 22 4-25 111-132 (232)
243 TIGR01130 ER_PDI_fam protein d 26.6 3.7E+02 0.0081 22.9 7.7 73 4-78 22-110 (462)
244 PRK13703 conjugal pilus assemb 25.8 2.3E+02 0.0051 22.6 5.6 33 4-36 147-183 (248)
245 PRK13949 shikimate kinase; Pro 25.0 1E+02 0.0022 22.6 3.4 32 1-32 1-32 (169)
246 cd03001 PDI_a_P5 PDIa family, 24.5 2E+02 0.0043 18.4 5.6 51 5-57 23-77 (103)
247 KOG3131 Uncharacterized conser 24.1 78 0.0017 25.1 2.6 21 3-23 155-175 (281)
248 COG5515 Uncharacterized conser 23.3 90 0.0019 18.9 2.2 22 3-24 2-27 (70)
249 PTZ00443 Thioredoxin domain-co 23.3 3.7E+02 0.0079 21.0 10.3 73 4-78 56-140 (224)
250 cd02970 PRX_like2 Peroxiredoxi 22.5 1.5E+02 0.0033 20.5 3.8 52 8-61 32-90 (149)
251 cd03025 DsbA_FrnE_like DsbA fa 22.4 1.3E+02 0.0028 22.2 3.6 31 3-33 2-38 (193)
252 PF11732 Thoc2: Transcription- 22.1 1.5E+02 0.0033 18.9 3.2 34 153-191 43-76 (77)
253 cd03024 DsbA_FrnE DsbA family, 22.0 92 0.002 23.2 2.7 31 4-34 1-39 (201)
254 cd05295 MDH_like Malate dehydr 21.3 73 0.0016 27.8 2.2 72 10-81 2-89 (452)
255 PLN02309 5'-adenylylsulfate re 21.1 2.8E+02 0.006 24.4 5.6 52 4-57 369-427 (457)
256 TIGR01764 excise DNA binding d 20.9 1.4E+02 0.0029 16.1 2.7 24 51-74 25-48 (49)
257 KOG0190 Protein disulfide isom 20.5 4.2E+02 0.0092 23.6 6.6 73 4-78 46-133 (493)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-39 Score=248.26 Aligned_cols=212 Identities=46% Similarity=0.804 Sum_probs=188.9
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCC-CCCC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWP-RHPL 82 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~-~~~l 82 (223)
++||++..|||++|++++|.++||+|+.+++|+.++++++++.||-+++||||+++|.+|+||..|++||++.++ ++++
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~~i 89 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGPPI 89 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCCCC
Confidence 899999999999999999999999999999999999999999997679999999999999999999999999999 6899
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHhhc-CCchhHHHHHHHHHHHHHHHHHcccC-CCCccccCCCchhHHHHHHHH
Q 027486 83 LPKDPYDRAAARFWIKFSDENLAPTFVAFYI-GVGEEHEKAIKEAKEKLKIIEEQGLG-DKKFFGGNEIGMADLVFGWIA 160 (223)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~e~~L~-~~~~l~G~~~s~aD~~~~~~l 160 (223)
+|+||.+|++++.|+++++..+.......+. ..++..+...+++.+.|..| |+.|+ +.+|++|+++|+.|+++++.+
T Consensus 90 LP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~l-E~el~k~k~~fgG~~~G~vDi~~~p~~ 168 (231)
T KOG0406|consen 90 LPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVL-EEELGKGKDFFGGETIGFVDIAIGPSF 168 (231)
T ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHH-HHHHhcCCCCCCCCCcCHhhhhHHhhH
Confidence 9999999999999999999887777666666 44577788899999999999 77777 889999999999999999655
Q ss_pred HHHHHH-HHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHHHHHHHHHHHHH
Q 027486 161 KSFGVV-EEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDEMFAYYKQKRDM 216 (223)
Q Consensus 161 ~~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 216 (223)
.++... ....+.+.....++|+|.+|.+++.++|.+++++++.+...++.+..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~ 225 (231)
T KOG0406|consen 169 ERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQG 225 (231)
T ss_pred HHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHh
Confidence 555333 33333455556899999999999999999999999999999999988875
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=6.5e-39 Score=248.53 Aligned_cols=195 Identities=24% Similarity=0.381 Sum_probs=167.8
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCCCCCCC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWPRHPLL 83 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~l~ 83 (223)
|+||+++.||+|++|+++|+++|++|+.+.++..+++++|+++||. |+||+|+++|.+|+||.+|++||++++|+.+++
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~l~ 89 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPPLM 89 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCCCC
Confidence 8999999999999999999999999999999988888999999998 999999999999999999999999999988899
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHH
Q 027486 84 PKDPYDRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSF 163 (223)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~ 163 (223)
|.++.++++++.|+.++.+.+..........++...+...+.+.+.|+.+ |++|++++|++|+++|+||+++++.+.+.
T Consensus 90 p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-e~~L~~~~~l~G~~~t~AD~~l~~~~~~~ 168 (211)
T PRK09481 90 PVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAI-APVFGEKPYFMSEEFSLVDCYLAPLLWRL 168 (211)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHHhccCCcccCCCccHHHHHHHHHHHHH
Confidence 99999999999999887765544443333333445566678889999999 99999899999999999999999988776
Q ss_pred HHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHH
Q 027486 164 GVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDE 205 (223)
Q Consensus 164 ~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (223)
... +.++. ...+|+|.+|++++.++|++++++.+...
T Consensus 169 ~~~----~~~~~-~~~~p~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 169 PVL----GIELS-GPGAKELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred Hhc----CCCCC-CCCChhHHHHHHHHhccHHHHHHcCHHHH
Confidence 432 44432 24799999999999999999999876543
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=2.5e-35 Score=228.99 Aligned_cols=193 Identities=21% Similarity=0.307 Sum_probs=158.5
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCCC
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWPR 79 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~ 79 (223)
-||||+++.||++++++++|.++||+|+.+.++.. ...++++..||. |+||+|+++|.+|+||.+|++||++++++
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~~ 80 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYAD 80 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcCC
Confidence 38999999999999999999999999999998765 567889999998 99999999999999999999999999974
Q ss_pred C--CCCCCCHHHHHHHHHHHHHHhhhhhhHHH-----Hhhc----C--CchhHHHHHHHHHHHHHHHHHcccCCCCcccc
Q 027486 80 H--PLLPKDPYDRAAARFWIKFSDENLAPTFV-----AFYI----G--VGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGG 146 (223)
Q Consensus 80 ~--~l~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~--~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G 146 (223)
. +++|.++.+++++++|+.+.++.+.+... ..+. . +....+....++.+.|+.| |+.|++++|++|
T Consensus 81 ~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G 159 (214)
T PLN02473 81 QGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVY-ENRLATNRYLGG 159 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHH-HHHhccCCcccC
Confidence 3 68999999999999999988776543321 1121 1 1223455667889999999 999998899999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCC
Q 027486 147 NEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLP 201 (223)
Q Consensus 147 ~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 201 (223)
+++|+||+++++.+.+....... ..+ .+++|+|.+|++++.++|++++++.
T Consensus 160 d~~t~ADi~~~~~~~~~~~~~~~--~~~--~~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 160 DEFTLADLTHMPGMRYIMNETSL--SGL--VTSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred CCCCHHHHHHHHHHHHHHhcccc--HHH--HhcCHHHHHHHHHHhcChhhHHHHH
Confidence 99999999999988776421111 112 2489999999999999999998764
No 4
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=2e-34 Score=223.98 Aligned_cols=194 Identities=23% Similarity=0.350 Sum_probs=156.3
Q ss_pred CCceEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhC
Q 027486 1 MEQVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAW 77 (223)
Q Consensus 1 M~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 77 (223)
|+ +|||+.+.| +++|++++|.++|++|+.+.++.. ..+++|++.||. |+||+|+++|.+|+||.+|++||++++
T Consensus 1 ~~-~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 1 MV-LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred Ce-EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHHc
Confidence 65 899997665 699999999999999999998864 557899999998 999999999999999999999999999
Q ss_pred CC--CCCCCCCHHHHHHHHHHHHHHhhhhhhHHHH-----hh------cCCchhHHHHHHHHHHHHHHHHHcccCCCCcc
Q 027486 78 PR--HPLLPKDPYDRAAARFWIKFSDENLAPTFVA-----FY------IGVGEEHEKAIKEAKEKLKIIEEQGLGDKKFF 144 (223)
Q Consensus 78 ~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l 144 (223)
+. .+++|.++.+++++++|+.+++..+.+.+.. .+ ..++...+...+.+.+.++.| |++|++++|+
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l 156 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVY-EARLSKSKYL 156 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHH-HHHhcCCccc
Confidence 74 3599999999999999999877654433211 11 112223455677889999999 9999988999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCC
Q 027486 145 GGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPD 202 (223)
Q Consensus 145 ~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (223)
+|+++|+||+++++++.+.... . +.. .....+|+|.+|++++.++|++++++..
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~~--~-~~~-~~~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVGP--I-GKA-YLIKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhcc--c-chh-hhhccCchHHHHHHHHHcChHHHHHHHH
Confidence 9999999999999887766321 0 111 1134789999999999999999998754
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=1.7e-34 Score=224.23 Aligned_cols=191 Identities=24% Similarity=0.290 Sum_probs=157.0
Q ss_pred ceEEeccC--CChhHHHHHHHHHHhCCCceeeecCCCC---CchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhC
Q 027486 3 QVKLIGAW--PSPYVYRVIWALQLKGIKYEYVEENLSN---KSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAW 77 (223)
Q Consensus 3 ~~~Ly~~~--~sp~~~~vr~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 77 (223)
.++||+.+ .||+|++++++|.++||+|+.+.++... ..++|+++||. |+||+|++||.+|+||.+|++||++++
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL~~~~ 83 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYLEERF 83 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHHHHHc
Confidence 47999976 7999999999999999999999998753 56899999998 999999999999999999999999999
Q ss_pred CCCC---CCCCCHHHHHHHHHHHHHHhhhhhhHHH-----Hhhc--CCchhHHHHHHHHHHHHHHHHHcccCC-CCcccc
Q 027486 78 PRHP---LLPKDPYDRAAARFWIKFSDENLAPTFV-----AFYI--GVGEEHEKAIKEAKEKLKIIEEQGLGD-KKFFGG 146 (223)
Q Consensus 78 ~~~~---l~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~l~~l~e~~L~~-~~~l~G 146 (223)
++.. ++|.++.+++++++|+.++++.+.+... ..+. ......+...+.+.+.++.| |++|++ ++|++|
T Consensus 84 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~l~G 162 (214)
T PRK15113 84 APPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVA-ERLLAPGQPNLFG 162 (214)
T ss_pred CCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHH-HHHHhcCCCEeeC
Confidence 8665 9999999999999999998765544321 1111 12223455677789999999 999974 579999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHH
Q 027486 147 NEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDE 205 (223)
Q Consensus 147 ~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (223)
+ +|+||+++++.+.++... +... .|+|.+|++++.++|+|++++++.+.
T Consensus 163 ~-~TlADi~l~~~l~~~~~~----~~~~-----~p~l~~~~~r~~~rp~~~~~~~~~~~ 211 (214)
T PRK15113 163 E-WCIADTDLALMLNRLVLH----GDEV-----PERLADYATFQWQRASVQRWLALSAK 211 (214)
T ss_pred C-ccHHHHHHHHHHHHHHHc----CCCC-----CHHHHHHHHHHhcCHHHHHHHHHhhh
Confidence 6 999999999998876422 3221 29999999999999999998877654
No 6
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=2.5e-34 Score=221.26 Aligned_cols=189 Identities=19% Similarity=0.348 Sum_probs=157.1
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCC----CchHHHhhCCCCCccceEe-eCCeeccchHHHHHHHHhhCC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSN----KSDMLLKYNPVHQKVPVLV-HDEKPIVESTVILEYIEEAWP 78 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~ 78 (223)
|+||+++.| ++++++++|+++||+|+.+.+++.. ..++|.++||. |+||+|+ +||.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 589998876 7999999999999999999998752 45789999998 9999998 688999999999999999998
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHHhhhhhhHHHHhhcCC--chhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHH
Q 027486 79 RHPLL-PKDPYDRAAARFWIKFSDENLAPTFVAFYIGV--GEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLV 155 (223)
Q Consensus 79 ~~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~ 155 (223)
+.+++ |.++.+++++++|+.++.+.+.+.+...+... +.......+.+.+.|+.| |++|++++|++|+++|+||++
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~s~ADi~ 157 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYV-DEALADEQWICGQRFTIADAY 157 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHH-HHHhcCCCeeeCCCCcHHhHH
Confidence 77766 66788999999999988777776655544322 222244567789999999 999998999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCC
Q 027486 156 FGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPD 202 (223)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (223)
+++++.+.... +.+ ...+|+|.+|++++.++|++++++..
T Consensus 158 l~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 158 LFTVLRWAYAV----KLN---LEGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHHHHHHhhcc----CCC---cccchHHHHHHHHHHcCHHHHHHHHH
Confidence 99988877432 322 34899999999999999999998754
No 7
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=3e-34 Score=223.03 Aligned_cols=186 Identities=20% Similarity=0.348 Sum_probs=150.7
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEee-----CC--eeccchHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVH-----DE--KPIVESTVILEYI 73 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~-----~g--~~l~eS~~I~~yL 73 (223)
+|||+.+ +|+|++|+++|+++||+|+.+.+++. .+.++|+++||. |+||+|++ +| .+|+||.+|++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999877 78999999999999999999999875 346899999998 99999996 45 4799999999999
Q ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHHhhhhhhHHHHh--hc-----CCchhHHHHHHHHHHHHHHHHHcccCCCCcccc
Q 027486 74 EEAWPRHPLLPKDPYDRAAARFWIKFSDENLAPTFVAF--YI-----GVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGG 146 (223)
Q Consensus 74 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G 146 (223)
+++++ .+.|.++.+++++++|+.|+.+.+.+.+... +. .++...+.....+.+.|..| |++|++++|++|
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G 156 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVL-NKRLENSPWLGG 156 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHH-HHHhccCccccC
Confidence 99986 3678889999999999999877665543211 11 12234455667788899999 999998899999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCC
Q 027486 147 NEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLP 201 (223)
Q Consensus 147 ~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 201 (223)
+++|+||+++++.+...... +. ....||+|.+|++++.++|++++++.
T Consensus 157 d~~t~ADi~l~~~~~~~~~~----~~---~~~~~P~l~~w~~r~~~rp~~~~~~~ 204 (215)
T PRK13972 157 ENYSIADIACWPWVNAWTRQ----RI---DLAMYPAVKNWHERIRSRPATGQALL 204 (215)
T ss_pred CCCCHHHHHHHHHHHHHhhc----CC---cchhCHHHHHHHHHHHhCHHHHHHHH
Confidence 99999999998866443211 22 23589999999999999999988654
No 8
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=8.9e-34 Score=218.37 Aligned_cols=192 Identities=23% Similarity=0.336 Sum_probs=156.6
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEe-eCCeeccchHHHHHHHHhhCCCCCC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV-HDEKPIVESTVILEYIEEAWPRHPL 82 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~l 82 (223)
|+||+++.||++++||++|+++||+|+.+.++....++++...||. |+||+|+ ++|.+|+||.+|++||++++++.++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999999877667788889998 9999998 6789999999999999999987789
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHH----hhc---CCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHH
Q 027486 83 LPKDPYDRAAARFWIKFSDENLAPTFVA----FYI---GVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLV 155 (223)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~ 155 (223)
+|.++.+++++++|..++++.+...+.. ... ..+...+...+.+.+.|+.| |++|++++ ++|+++|+||++
T Consensus 80 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-e~~L~~~~-l~Gd~~t~ADi~ 157 (202)
T PRK10357 80 LPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDAL-EGYLVDGT-LKTDTVNLATIA 157 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHH-HHhhccCc-ccCCCcCHHHHH
Confidence 9999999999999988776654433211 111 11223345667889999999 99998778 999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCC
Q 027486 156 FGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPD 202 (223)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (223)
+++.+.++..... +..+ ..++|++.+|++++.++|+|+++.+.
T Consensus 158 l~~~l~~~~~~~~--~~~~--~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 158 IACAVGYLNFRRV--APGW--CVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHHhccc--Ccch--hhcChHHHHHHHHHhcChhhhhcCCC
Confidence 9998887743200 1111 24789999999999999999998765
No 9
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=217.83 Aligned_cols=185 Identities=33% Similarity=0.573 Sum_probs=158.4
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC--CCchHHHhhCCCCCccceEeeCCe-eccchHHHHHHHHhhCCCC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS--NKSDMLLKYNPVHQKVPVLVHDEK-PIVESTVILEYIEEAWPRH 80 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~L~~~g~-~l~eS~~I~~yL~~~~~~~ 80 (223)
++||+++.||+|+++++.+.++|++|+.+.++.. ...++|+.+||. |+||+|+++|. +|+||.+|++||++++|+.
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 5899999999999999999999999999999987 578999999998 99999997664 8999999999999999977
Q ss_pred CCCCCCHH---HHHHHHHHHHHHhhhhhhHHHHhhcC--------CchhHHHHHHHHHHHHHHHHHcccCCCCccccCCC
Q 027486 81 PLLPKDPY---DRAAARFWIKFSDENLAPTFVAFYIG--------VGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEI 149 (223)
Q Consensus 81 ~l~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~ 149 (223)
+++|.++. ++++...|+.++...+.+.+...... ++...+.....+...++.+ |..|++++|++|+++
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~ 158 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALL-EALLADGPYLAGDRF 158 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHH-HHHhccCCcccCCCC
Confidence 78998774 77888899999887777776543322 2344566778899999999 999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhH
Q 027486 150 GMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIK 197 (223)
Q Consensus 150 s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 197 (223)
|+||+++++.+.++... +... ..+|++.+|++++.++|+++
T Consensus 159 tiAD~~~~~~~~~~~~~----~~~~---~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 159 TIADIALAPLLWRLALL----GEEL---ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CHHHHHHHHHHHHhhhc----Cccc---ccChHHHHHHHHHHcCCchh
Confidence 99999999998886433 3222 48999999999999999965
No 10
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=2.5e-33 Score=217.07 Aligned_cols=190 Identities=31% Similarity=0.434 Sum_probs=155.3
Q ss_pred EEeccCCChhHHHHHHHHHHhCCCceeeecCCC----CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCCCC
Q 027486 5 KLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS----NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWPRH 80 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 80 (223)
+||+++.||+++++|++|.++||+|+.+.++.. .+.+++.++||. |+||+|+++|.+|+||.+|++||++++++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998862 346789999998 999999999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhhhH----HHHhhc----CCchh-HHHHHHHHHHHHHHHHHcccCC--CCccccCCC
Q 027486 81 PLLPKDPYDRAAARFWIKFSDENLAPT----FVAFYI----GVGEE-HEKAIKEAKEKLKIIEEQGLGD--KKFFGGNEI 149 (223)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~-~~~~~~~~~~~l~~l~e~~L~~--~~~l~G~~~ 149 (223)
.++|.++.+++++++|+.++.+.+.+. +...+. ..++. .+...+.+.+.|+.| |++|++ ++|++|+++
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~~l~G~~~ 158 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAAL-EALLQPHAGAFCVGDTP 158 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCEeeCCCC
Confidence 899999999999999999886544332 111111 12222 233456688999999 999985 569999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCCh
Q 027486 150 GMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDC 203 (223)
Q Consensus 150 s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (223)
|+||+++++.+.+.... +.. ...||+|.+|+++|.++|++++++.+.
T Consensus 159 T~ADi~~~~~l~~~~~~----~~~---~~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 159 TLADLCLVPQVYNAERF----GVD---LTPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred CHHHHHHHHHHHHHHHc----CCC---cccchHHHHHHHHHhcCHHHHHhCccc
Confidence 99999999998876422 321 358999999999999999999988653
No 11
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=4.5e-32 Score=211.26 Aligned_cols=193 Identities=21% Similarity=0.289 Sum_probs=155.4
Q ss_pred cCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCCC---CCCCCC
Q 027486 9 AWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWPR---HPLLPK 85 (223)
Q Consensus 9 ~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~---~~l~p~ 85 (223)
...||+|++++++|.++||+|+.+.+++..++++|+++||. |+||||+++|.+|+||.+|++||+++++. +++.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 46899999999999999999999999999889999999998 99999999999999999999999999964 346666
Q ss_pred CHHHHHHHHHHHHHHhhhhhhHHHHhhcC-CchhHHHHHHHHHHHHHHHHHcccC------------------CCCcccc
Q 027486 86 DPYDRAAARFWIKFSDENLAPTFVAFYIG-VGEEHEKAIKEAKEKLKIIEEQGLG------------------DKKFFGG 146 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~e~~L~------------------~~~~l~G 146 (223)
++..++.... +.+.+..++.. .+...++..+++.+.|+.| |++|+ +++|+.|
T Consensus 95 ~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L-e~~L~~~~~~~~~~~~~~~~~~~~~~f~~G 165 (236)
T TIGR00862 95 HPESNTAGLD--------IFAKFSAYIKNSNPEANDNLEKGLLKALKKL-DDYLNSPLPEEIDEDSAEDEKVSRRKFLDG 165 (236)
T ss_pred CHHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-HHHHhccccccccccccccccccCCCcccC
Confidence 6654443211 22222222222 2333455566789999999 88886 5799999
Q ss_pred CCCchhHHHHHHHHHHHHHH-HHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHHHHHHHHHH
Q 027486 147 NEIGMADLVFGWIAKSFGVV-EEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDEMFAYYKQK 213 (223)
Q Consensus 147 ~~~s~aD~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~ 213 (223)
+++|+|||++++.+.++... ....+.++ .+++|+|.+|++++.++|+|+++++....+...+..+
T Consensus 166 d~~tlaD~~l~p~l~~l~~~~~~~~~~~i--~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~ 231 (236)
T TIGR00862 166 DELTLADCNLLPKLHIVKVVAKKYRNFDI--PAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADV 231 (236)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHhCcCc--cccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHH
Confidence 99999999999999998754 23335454 4699999999999999999999999999988887665
No 12
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=3.1e-32 Score=217.44 Aligned_cols=196 Identities=21% Similarity=0.330 Sum_probs=153.1
Q ss_pred ceEEeccCCChhHHHHHHHHHHh------CCCceeeecCCC---CCchHHHhhCCCCCccceEeeC----CeeccchHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLK------GIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHD----EKPIVESTVI 69 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~----g~~l~eS~~I 69 (223)
.||||+.+ ||+|++|+++|+++ |++|+.+.|+.. ...++|+++||. |+||+|+++ |.+|+||.+|
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHHH
Confidence 48999865 99999999999997 899999998864 457899999998 999999964 3689999999
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhhhhh---hHHHHhhc--CC--chhHHHHHHHHHHHHHHHHHcccCCCC
Q 027486 70 LEYIEEAWPRHPLLPKDPYDRAAARFWIKFSDENLA---PTFVAFYI--GV--GEEHEKAIKEAKEKLKIIEEQGLGDKK 142 (223)
Q Consensus 70 ~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~--~~~~~~~~~~~~~~l~~l~e~~L~~~~ 142 (223)
++||+++++. ++|.++.+++++++|+.++...+. ..+...+. .. +...+....++.+.|+.| |++|++++
T Consensus 122 l~YL~~~~~~--L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-e~~L~~~~ 198 (264)
T PRK11752 122 LLYLAEKFGA--FLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVL-DKQLAEHE 198 (264)
T ss_pred HHHHHHhcCC--cCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHH-HHHhccCC
Confidence 9999999873 899999999999999998765431 11112221 11 122345566788899999 99999889
Q ss_pred ccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCCh
Q 027486 143 FFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDC 203 (223)
Q Consensus 143 ~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~ 203 (223)
|++|+++|+||+++++.+.++............+...||+|.+|++++.++|++++++..+
T Consensus 199 fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 199 YIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred CCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 9999999999999999877664311000111222458999999999999999999987654
No 13
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-32 Score=196.73 Aligned_cols=191 Identities=30% Similarity=0.437 Sum_probs=160.4
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCC----CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCC
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS----NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWP 78 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~ 78 (223)
+++||++..|..++|||++|+++||+|+.++|++- ....+|.+.||+ ++||+|++||.+|+||.||+.||++.+|
T Consensus 5 KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt~P 83 (217)
T KOG0868|consen 5 KPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEETYP 83 (217)
T ss_pred cchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhcCC
Confidence 78999999999999999999999999999999875 335689999999 9999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhhhhHH----HHhhcCCch--hHHHHHHHHHHHHHHHHHcccC--CCCccccCCCc
Q 027486 79 RHPLLPKDPYDRAAARFWIKFSDENLAPTF----VAFYIGVGE--EHEKAIKEAKEKLKIIEEQGLG--DKKFFGGNEIG 150 (223)
Q Consensus 79 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~l~~l~e~~L~--~~~~l~G~~~s 150 (223)
+++|+|.++..|+.++++...+.+.+.|.- ...+..... ...=+...+.+.|..| |+.|. .++|.+||..|
T Consensus 84 ~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~AL-EklL~~~aGkycvGDevt 162 (217)
T KOG0868|consen 84 DPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTAL-EKLLKSHAGKYCVGDEVT 162 (217)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHH-HHHHHHccCCcccCceee
Confidence 999999999999999999999888765552 122221111 1222345567789999 88886 57899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCC
Q 027486 151 MADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPD 202 (223)
Q Consensus 151 ~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (223)
+||+++.+.++..+.+ . ++...||.+.+..+.+.+.|.|+..-++
T Consensus 163 iADl~L~pqv~nA~rf----~---vdl~PYPti~ri~e~l~elpaFq~ahP~ 207 (217)
T KOG0868|consen 163 IADLCLPPQVYNANRF----H---VDLTPYPTITRINEELAELPAFQAAHPD 207 (217)
T ss_pred hhhhccchhhhhhhhc----c---ccCCcCchHHHHHHHHHhCHHHHhcCCC
Confidence 9999999998888543 3 3356899999999999999999986654
No 14
>PLN02378 glutathione S-transferase DHAR1
Probab=99.98 E-value=5.4e-31 Score=204.33 Aligned_cols=186 Identities=25% Similarity=0.361 Sum_probs=143.9
Q ss_pred cCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCCCCCCCCCCHH
Q 027486 9 AWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWPRHPLLPKDPY 88 (223)
Q Consensus 9 ~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~l~p~~~~ 88 (223)
+..||||+|++++|+++|++|+.+.+++..++++|++.||. |+||+|+++|.+|+||.+|++||++++++..+. ++.
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~--~~~ 93 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLK--TPA 93 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCCCC--CHH
Confidence 45699999999999999999999999998888999999998 999999999999999999999999999865553 455
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccC--CCCccccCCCchhHHHHHHHHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLG--DKKFFGGNEIGMADLVFGWIAKSFGVV 166 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~--~~~~l~G~~~s~aD~~~~~~l~~~~~~ 166 (223)
+++++...+ ...+...+.. ....+...+.+.+.|+.| |++|+ +++|++|+++|+||+++++.+.++...
T Consensus 94 ~~a~i~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~l~~l-e~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~ 164 (213)
T PLN02378 94 EFASVGSNI-------FGTFGTFLKS-KDSNDGSEHALLVELEAL-ENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVA 164 (213)
T ss_pred HHHHHHHHH-------HHHHHHHHhc-CChhhHHHHHHHHHHHHH-HHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHH
Confidence 666544322 2222222221 112233445677889999 99997 578999999999999999998776432
Q ss_pred HH-HhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHHHHH
Q 027486 167 EE-VVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDEMFA 208 (223)
Q Consensus 167 ~~-~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~ 208 (223)
.. ....+. ...+|+|.+|++++.++|++++++........
T Consensus 165 ~~~~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~~ 205 (213)
T PLN02378 165 LGHFKSWSV--PESFPHVHNYMKTLFSLDSFEKTKTEEKYVIS 205 (213)
T ss_pred HHHhcCCCc--hhHhHHHHHHHHHHhcCCCeecccCChHHHHH
Confidence 11 111122 35899999999999999999999888766544
No 15
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.97 E-value=7e-31 Score=202.64 Aligned_cols=190 Identities=17% Similarity=0.143 Sum_probs=140.9
Q ss_pred CC-ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHH--------hhCCCCCccceEeeCCeeccchHHHHH
Q 027486 1 ME-QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLL--------KYNPVHQKVPVLVHDEKPIVESTVILE 71 (223)
Q Consensus 1 M~-~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~~~vP~L~~~g~~l~eS~~I~~ 71 (223)
|+ +++||+++.++++++||++|+++|++|+.+.++. .. +.+. ..||. |+||+|++||.+|+||.+|++
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 55 6899999999999999999999999999997743 22 2333 47998 999999999999999999999
Q ss_pred HHHhhCCCCCCCCCCHHHHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccCC--CCccccCCC
Q 027486 72 YIEEAWPRHPLLPKDPYDRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLGD--KKFFGGNEI 149 (223)
Q Consensus 72 yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~--~~~l~G~~~ 149 (223)
||+++++ +.+.+..+++.+..+.....+........... .+...+...+.+.+.|..| |+.|++ ++|++|+++
T Consensus 78 YLa~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~~l~Gd~~ 152 (205)
T PTZ00057 78 YLSKKYK---ICGESELNEFYADMIFCGVQDIHYKFNNTNLF-KQNETTFLNEELPKWSGYF-ENILKKNHCNYFVGDNL 152 (205)
T ss_pred HHHHHcC---CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHH-HHHHHhCCCCeeeCCcc
Confidence 9999997 44555545544444333222221111110110 1122244567788999999 999974 389999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChH
Q 027486 150 GMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCD 204 (223)
Q Consensus 150 s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (223)
|+||+++++.+.++.... + .+...||+|.+|+++++++|++++++.++.
T Consensus 153 T~AD~~l~~~~~~~~~~~---~---~~l~~~P~l~~~~~r~~~~P~~k~y~~~~~ 201 (205)
T PTZ00057 153 TYADLAVFNLYDDIETKY---P---NSLKNFPLLKAHNEFISNLPNIKNYISNRK 201 (205)
T ss_pred cHHHHHHHHHHHHHHHhC---h---hhhccChhHHHHHHHHHhChHHHHHHHhCC
Confidence 999999999887764211 2 113589999999999999999999987664
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.97 E-value=2.6e-30 Score=205.48 Aligned_cols=189 Identities=25% Similarity=0.371 Sum_probs=146.8
Q ss_pred cCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCCCCCCCCCCHH
Q 027486 9 AWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWPRHPLLPKDPY 88 (223)
Q Consensus 9 ~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~l~p~~~~ 88 (223)
...||+|++++++|.++||+|+.+.+++..++++|+++||. |+||+|+++|.+|+||.+|++||++++|+.++. ++.
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~ 146 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPP 146 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHH
Confidence 34499999999999999999999999998889999999998 999999998999999999999999999876664 466
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccC-CCCccccCCCchhHHHHHHHHHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLG-DKKFFGGNEIGMADLVFGWIAKSFGVVE 167 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~-~~~~l~G~~~s~aD~~~~~~l~~~~~~~ 167 (223)
+++++.+++. ..+..++.. ....+.....+.+.|+.| |++|+ +++|++|+++|+||+++++.+.++....
T Consensus 147 era~i~~~l~-------~~~~~~~~~-~~~~~~~~~~l~~~l~~L-E~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~ 217 (265)
T PLN02817 147 EKASVGSKIF-------STFIGFLKS-KDPGDGTEQALLDELTSF-DDYIKENGPFINGEKISAADLSLGPKLYHLEIAL 217 (265)
T ss_pred HHHHHHHHHH-------HHHHHHhcc-CCcchHHHHHHHHHHHHH-HHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7776655321 122222221 111122345677889999 99987 4799999999999999999988775322
Q ss_pred H-HhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHHHHHHHH
Q 027486 168 E-VVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDEMFAYYK 211 (223)
Q Consensus 168 ~-~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (223)
. ..+.+. ...+|+|.+|++++.++|+|++++...+.+...+-
T Consensus 218 ~~~~~~~i--~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~~ 260 (265)
T PLN02817 218 GHYKNWSV--PDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWR 260 (265)
T ss_pred HHhcCCCc--cccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHhH
Confidence 2 112222 35899999999999999999999998777655543
No 17
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.2e-30 Score=200.38 Aligned_cols=198 Identities=25% Similarity=0.374 Sum_probs=167.6
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCC-
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWP- 78 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~- 78 (223)
.++||+++.||.|+++.+++.++|++|+.+.++.. +.+++|+++||. |+||+|+++|..++||.||+.||.++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 48999999999999999999999999999988754 789999999998 9999999999999999999999999986
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHHhhhhhhHH--HH-----hhcC--CchhHHHHHHHHHHHHHHHHHcccCCCCccccCC
Q 027486 79 RHP-LLPKDPYDRAAARFWIKFSDENLAPTF--VA-----FYIG--VGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNE 148 (223)
Q Consensus 79 ~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~--~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~ 148 (223)
... ++|.++.+++.+++|+.+.++.+.+.. .. .+.. +..........+.+.+..+ |.+|.++.|+.|++
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~l~~~~yl~g~~ 159 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNL-ERFLKTQVYLAGDQ 159 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHH-HHHHccCCcccCCc
Confidence 334 899999999999999999888877763 22 2222 5666788899999999999 99999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHHH
Q 027486 149 IGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDEM 206 (223)
Q Consensus 149 ~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~ 206 (223)
+|+||+.+.+.+..+.. .. - ......++|++.+|++++.++|++++........
T Consensus 160 ~tlADl~~~~~~~~~~~--~~-~-~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~~~~~ 213 (226)
T KOG0867|consen 160 LTLADLSLASTLSQFQG--KF-A-TEKDFEKYPKVARWYERIQKRPAYEEANEKGAAP 213 (226)
T ss_pred ccHHHHHHhhHHHHHhH--hh-h-hhhhhhhChHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 99999999998888742 11 1 1123569999999999999999988766544443
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.97 E-value=6.9e-30 Score=197.81 Aligned_cols=178 Identities=19% Similarity=0.215 Sum_probs=136.9
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEe-eCCeeccchHHHHHHHHhhCCCCCC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV-HDEKPIVESTVILEYIEEAWPRHPL 82 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~l 82 (223)
||||+++.||+|+++|++|+++||+|+.+.++...... -...||. |+||+|+ ++|..|+||.+|++||+++||++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 58999999999999999999999999999886543222 2578997 8999995 8899999999999999999986544
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhhHHHHhhcC-------Cch---------------------hHHHHHHHHHHHHHHHH
Q 027486 83 LPKDPYDRAAARFWIKFSDENLAPTFVAFYIG-------VGE---------------------EHEKAIKEAKEKLKIIE 134 (223)
Q Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------------------~~~~~~~~~~~~l~~l~ 134 (223)
.+. +++.++.|+.++...+...+...+.. ... ..+...+.+.+.|+.|
T Consensus 79 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l- 154 (210)
T PRK10387 79 TGK---RSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRAL- 154 (210)
T ss_pred CCc---ccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHH-
Confidence 322 46677888877765544333221110 000 0134567888999999
Q ss_pred HcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhh
Q 027486 135 EQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVI 196 (223)
Q Consensus 135 e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (223)
|.+|++ +|++|+++|+||+++++.+.++... .+ .+ .+|+|.+|++|+.++|++
T Consensus 155 e~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~---~~---~~--~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 155 DPLIVK-PNAVNGELSTDDIHLFPILRNLTLV---KG---IE--WPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHhcC-ccccCCCCCHHHHHHHHHHhcceee---cC---CC--CCHHHHHHHHHHHHHhCC
Confidence 999986 9999999999999999999888532 02 12 459999999999999876
No 19
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-28 Score=185.52 Aligned_cols=194 Identities=23% Similarity=0.271 Sum_probs=158.5
Q ss_pred CCceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCCCC
Q 027486 1 MEQVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWPRH 80 (223)
Q Consensus 1 M~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 80 (223)
|..+||+|++..+++..+|+++++.|++|+...++..+.-.......|+ ||+|+|..||..|.+|.||++||+++++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g-- 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG-- 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC--
Confidence 6789999999999999999999999999999999876532333445798 9999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhhhHHHHhhcC-----CchhHH-HHHHHHHHHHHHHHHcccC--CCCccccCCCchh
Q 027486 81 PLLPKDPYDRAAARFWIKFSDENLAPTFVAFYIG-----VGEEHE-KAIKEAKEKLKIIEEQGLG--DKKFFGGNEIGMA 152 (223)
Q Consensus 81 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~l~~l~e~~L~--~~~~l~G~~~s~a 152 (223)
+.|+++.+.++++.+.+...+.....+...+.. .+...+ .........+..+ ++.|. +++|++|+++|+|
T Consensus 78 -l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~-~~~L~~~~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 -LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKIL-EKILKKNKSGFLVGDKLTWA 155 (206)
T ss_pred -cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHH-HHHHHhCCCCeeecCcccHH
Confidence 999999999999999998888766655543331 111122 3445667788888 88887 5679999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChH
Q 027486 153 DLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCD 204 (223)
Q Consensus 153 D~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (223)
|+.++..+..+... +..+.. ..+|+|.++.+++.++|.+++++..+.
T Consensus 156 Dl~i~e~l~~l~~~---~~~~~~--~~~P~L~a~~~kv~~~p~ik~~i~~r~ 202 (206)
T KOG1695|consen 156 DLVIAEHLDTLEEL---LDPSAL--DHFPKLKAFKERVSSIPNIKKYLESRP 202 (206)
T ss_pred HHHHHHHHHHHHHh---cCchhh--ccChHHHHHHHHHhcCchHHHHHhcCC
Confidence 99999988888542 133333 378999999999999999999987764
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=5.2e-28 Score=187.04 Aligned_cols=176 Identities=16% Similarity=0.227 Sum_probs=132.8
Q ss_pred EEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEe-eCCeeccchHHHHHHHHhhCCCCCCC
Q 027486 5 KLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV-HDEKPIVESTVILEYIEEAWPRHPLL 83 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~l~ 83 (223)
|||++..||+|+|+|++|.++|++|+.+.+..... ....+.||. |+||+|+ +||.+++||.+|++||++++|.+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 69999999999999999999999999987754432 234789998 9999998 88999999999999999999764443
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHHhhcC-----------------Cch-----------hHHHHHHHHHHHHHHHHH
Q 027486 84 PKDPYDRAAARFWIKFSDENLAPTFVAFYIG-----------------VGE-----------EHEKAIKEAKEKLKIIEE 135 (223)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-----------~~~~~~~~~~~~l~~l~e 135 (223)
|. .+.+++.|+.++...+...+.+.+.. ..+ ..++....+.+.|+.+ |
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l-e 154 (209)
T TIGR02182 79 GK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEEL-D 154 (209)
T ss_pred CC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHH-H
Confidence 32 34566777766555443333222210 000 0134567788899999 9
Q ss_pred cccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCc-HHHHHHHHhhchhhh
Q 027486 136 QGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFP-RLHAWIGSFRSHPVI 196 (223)
Q Consensus 136 ~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p-~l~~w~~~~~~~p~~ 196 (223)
.+|++++|++| .+|+||+++++.+.++... + . ..+| +|.+|++|+++++++
T Consensus 155 ~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~----~-~----~~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 155 KLIDGPNAVNG-ELSEDDILVFPLLRNLTLV----A-G----INWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHhCccccCC-CCCHHHHHHHHHhcCeeee----c-C----CCCChHHHHHHHHHHHHhCC
Confidence 99999999965 6999999999998887431 1 0 1356 999999999999865
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.93 E-value=4.2e-25 Score=167.74 Aligned_cols=202 Identities=21% Similarity=0.294 Sum_probs=146.0
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhC-C
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAW-P 78 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~-~ 78 (223)
.+.||.++.|..+||||++++++||.|+...|++. ..++||..+||. |.||||++++.+|.|+..|++|+++++ +
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 47899999999999999999999999999998875 678999999997 999999999999999999999999998 4
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHHhh----------hhh---------hHH---HHhhc----------------------
Q 027486 79 RHPLLPK-DPYDRAAARFWIKFSDE----------NLA---------PTF---VAFYI---------------------- 113 (223)
Q Consensus 79 ~~~l~p~-~~~~~~~~~~~~~~~~~----------~~~---------~~~---~~~~~---------------------- 113 (223)
+..|.|. +..+..++.......+. .+. |.+ +....
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 5566664 21122222111111100 000 000 00000
Q ss_pred -------------CCchhHHHHHHHHHHHHHHHHHcccCC----CCccccCCCchhHHHHHHHHHHHHHHHHHhcccccC
Q 027486 114 -------------GVGEEHEKAIKEAKEKLKIIEEQGLGD----KKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLD 176 (223)
Q Consensus 114 -------------~~~~~~~~~~~~~~~~l~~l~e~~L~~----~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~ 176 (223)
.+.....+...++...|... |.-|++ ..|++|+.+|+||+.+.++|+++....- ....+.
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~V-EteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~--e~~yw~ 261 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQV-ETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGL--EKKYWE 261 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HHHHhhccccceeeccccchHHHHHHHHHHHHHHHccc--HHHhcc
Confidence 01112233455566677777 666664 6799999999999999999999976511 222233
Q ss_pred CCCCcHHHHHHHHhhchhhhHhhCCChHHHHH
Q 027486 177 ADSFPRLHAWIGSFRSHPVIKEHLPDCDEMFA 208 (223)
Q Consensus 177 ~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~ 208 (223)
.+..|+|..|++|++.|++|++++++.-.+.-
T Consensus 262 ~gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr 293 (325)
T KOG4420|consen 262 DGSRPNLESYFERVRRRFSFRKVLGDIFNILR 293 (325)
T ss_pred cCCCccHHHHHHHHHhhhHHHHhhhhHHHHHH
Confidence 56889999999999999999999988777655
No 22
>PLN02907 glutamate-tRNA ligase
Probab=99.90 E-value=8.8e-23 Score=180.77 Aligned_cols=158 Identities=18% Similarity=0.259 Sum_probs=130.0
Q ss_pred CCceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEe-eCCeeccchHHHHHHHHhhCCC
Q 027486 1 MEQVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV-HDEKPIVESTVILEYIEEAWPR 79 (223)
Q Consensus 1 M~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~ 79 (223)
|+ ++||+.+.|+ +.++.++|++.|++|+.+. .+|. |+||+|+ ++|..|+||.+|++||++.+++
T Consensus 1 ~~-~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~ 65 (722)
T PLN02907 1 ME-AKLSFPPDSP-PLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSASL 65 (722)
T ss_pred Ce-EEEEECCCCC-hHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhCCC
Confidence 66 8999998884 6678999999999999974 2577 9999999 5889999999999999999988
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHH
Q 027486 80 HPLLPKDPYDRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWI 159 (223)
Q Consensus 80 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~ 159 (223)
..++|.++.+++++++|+.++..... ...+.+.++.| |.+|++++||+|+++|+||+++++.
T Consensus 66 ~~L~p~d~~erAqV~qWL~~~~~~~~-----------------~~~l~~~L~~L-E~~L~~rtYLvGd~lTLADIaL~~~ 127 (722)
T PLN02907 66 PGFYGQDAFESSQVDEWLDYAPTFSS-----------------GSEFENACEYV-DGYLASRTFLVGYSLTIADIAIWSG 127 (722)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhccc-----------------HHHHHHHHHHH-HHHhccCCeecCCCCCHHHHHHHHH
Confidence 88999999999999999998754210 01355678999 9999999999999999999999988
Q ss_pred HHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhh
Q 027486 160 AKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPV 195 (223)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~ 195 (223)
+...... ...... ...||+|.+|++++.++|+
T Consensus 128 L~~~~~~--~~~~~~--~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 128 LAGSGQR--WESLRK--SKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHhhhhh--hhcccc--cccCHHHHHHHHHHHhCCC
Confidence 7654111 001111 3589999999999999999
No 23
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.3e-21 Score=144.84 Aligned_cols=192 Identities=22% Similarity=0.355 Sum_probs=156.8
Q ss_pred CChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCCCCCCCCCCHHHH
Q 027486 11 PSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWPRHPLLPKDPYDR 90 (223)
Q Consensus 11 ~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~l~p~~~~~~ 90 (223)
.||+||++-+.|.++|++|.+..||+..++++|..+.|. |++|+|..|+.+++||..|-++|++.+|.+++.--.+.+.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~E~ 98 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPPES 98 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCHHH
Confidence 699999999999999999999999999999999999997 9999999999999999999999999998655321112232
Q ss_pred HHHHHHHHHHhhhhhhHHHHhhcCCch-hHHHHHHHHHHHHHHHHHcccCC---CCccccCCCchhHHHHHHHHHHHHHH
Q 027486 91 AAARFWIKFSDENLAPTFVAFYIGVGE-EHEKAIKEAKEKLKIIEEQGLGD---KKFFGGNEIGMADLVFGWIAKSFGVV 166 (223)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~e~~L~~---~~~l~G~~~s~aD~~~~~~l~~~~~~ 166 (223)
+. +.+.++..+.+++..+.+ .-+.....+...|..| |++|.. ++|+.|+++|.||+.+++-|+.++..
T Consensus 99 as-------ag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~L-d~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va 170 (221)
T KOG1422|consen 99 AS-------AGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKL-DDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVA 170 (221)
T ss_pred Hh-------hHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHH-HHHhcCccCCccccCCeeeeehhhhchhHHHHHHH
Confidence 21 334456666666554444 3345567788899999 999984 79999999999999999999999766
Q ss_pred HHH-hcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHHHHHHHHHH
Q 027486 167 EEV-VGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDEMFAYYKQK 213 (223)
Q Consensus 167 ~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~ 213 (223)
... ...++ ++.++.|.+|++.+-++..|..+.++..++...+...
T Consensus 171 ~k~yk~~~I--P~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~ 216 (221)
T KOG1422|consen 171 AKHYKNFEI--PASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPV 216 (221)
T ss_pred HHHhcCCCC--chhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhh
Confidence 554 23333 5799999999999999999999999999988777653
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.84 E-value=7.9e-21 Score=123.05 Aligned_cols=74 Identities=45% Similarity=0.646 Sum_probs=71.0
Q ss_pred EeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCCCC
Q 027486 6 LIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWPRH 80 (223)
Q Consensus 6 Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 80 (223)
||+++.||||+|+|++|+++||+|+.+.++..++.+++...||. |+||+|++||.+++||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999988889999999998 999999999999999999999999999864
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.81 E-value=1.5e-19 Score=116.43 Aligned_cols=73 Identities=30% Similarity=0.468 Sum_probs=69.2
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAW 77 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 77 (223)
|+||+.+.||+|++++++|+++|++|+.+.++..+..+++++.||. |+||+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999988888999999998 899999999999999999999999874
No 26
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=7.5e-19 Score=126.64 Aligned_cols=182 Identities=19% Similarity=0.252 Sum_probs=126.7
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEe-eCCeeccchHHHHHHHHhhCCCCCC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV-HDEKPIVESTVILEYIEEAWPRHPL 82 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~l 82 (223)
|+||-+.+||||.|+|+++.++|||++.+.+..++......-+.. ++||+|+ ++|..+.||..|++|+++..+++-+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG~--KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIGQ--KQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhcc--cccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 589999999999999999999999999998877665555444443 7999999 7899999999999999999764333
Q ss_pred CCC-CHHHHHHHHHHHHHHhhhhhhHHH-------------HhhcCCch-----------hHHHHHHHHHHHHHHHHHcc
Q 027486 83 LPK-DPYDRAAARFWIKFSDENLAPTFV-------------AFYIGVGE-----------EHEKAIKEAKEKLKIIEEQG 137 (223)
Q Consensus 83 ~p~-~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-----------~~~~~~~~~~~~l~~l~e~~ 137 (223)
.+. .|...+..+.+-.+.+-.+.|.+. .+|...++ .......++...|+.| ++.
T Consensus 79 t~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l-~~L 157 (215)
T COG2999 79 TGKVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRAL-DKL 157 (215)
T ss_pred ccCcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHH-HHH
Confidence 332 333333333333333333333321 12221111 1234567778888899 888
Q ss_pred cCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhH
Q 027486 138 LGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIK 197 (223)
Q Consensus 138 L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 197 (223)
+.+..-+-| ..|.-|+.+|++|+.+-.. .|..|. .++..|.+++++...+.
T Consensus 158 i~~~s~~n~-~l~~ddi~vFplLRnlt~v---~gi~wp-----s~v~dy~~~msektqV~ 208 (215)
T COG2999 158 IVGPSAVNG-ELSEDDILVFPLLRNLTLV---AGIQWP-----SRVADYRDNMSEKTQVN 208 (215)
T ss_pred hcCcchhcc-ccchhhhhhhHHhccceec---ccCCCc-----HHHHHHHHHHHHhhCcc
Confidence 876553444 5999999999999988332 254443 47999999999876554
No 27
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.80 E-value=8.1e-19 Score=135.15 Aligned_cols=182 Identities=19% Similarity=0.325 Sum_probs=125.6
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHh-------
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEE------- 75 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~------- 75 (223)
+++||.+..||||.+||.+|.+.||||++++|++-.+.+ .+.+. +++||+|..+|..+.||..|+.-|..
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~Ss-ykKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSS-YKKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhh--ccccc-cccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 578999999999999999999999999999998654332 23444 38999999767779999999887733
Q ss_pred -------hCCCCCCC------------------CC-----CHHHHHHHHHHHHHHhhhhhhHHHH--------------h
Q 027486 76 -------AWPRHPLL------------------PK-----DPYDRAAARFWIKFSDENLAPTFVA--------------F 111 (223)
Q Consensus 76 -------~~~~~~l~------------------p~-----~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 111 (223)
.||..+.+ .+ +...+..-+.|.+|+++.+...+.+ +
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 23311100 00 1112224456777777764433321 1
Q ss_pred hc--------------------------------CCchhHHHHHHHHHHHHHHHHHcccC-CCCccccCCCchhHHHHHH
Q 027486 112 YI--------------------------------GVGEEHEKAIKEAKEKLKIIEEQGLG-DKKFFGGNEIGMADLVFGW 158 (223)
Q Consensus 112 ~~--------------------------------~~~~~~~~~~~~~~~~l~~l~e~~L~-~~~~l~G~~~s~aD~~~~~ 158 (223)
+. ....+....++++...++.+ -..|+ +++|+.|++|++||+.+++
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~W-vaalgknr~flGG~kPnLaDLsvfG 325 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQW-VAALGKNRPFLGGKKPNLADLSVFG 325 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHH-HHHhCCCCCccCCCCCchhhhhhhh
Confidence 10 01111223466677777777 77774 7899999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhch
Q 027486 159 IAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSH 193 (223)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 193 (223)
+|+.+..+..+ .+. -+..+|..|+-+|++.
T Consensus 326 vl~sm~gc~af--kd~---~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 326 VLRSMEGCQAF--KDC---LQNTSIGEWYYRMEAL 355 (370)
T ss_pred hhhHhhhhhHH--HHH---HhcchHHHHHHHHHHH
Confidence 99999766443 233 2668999999999874
No 28
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.80 E-value=2.1e-19 Score=115.50 Aligned_cols=70 Identities=27% Similarity=0.439 Sum_probs=65.0
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
.+||+++.||+|+++|++|+++|++|+.+.++.. .+.++|.++||. |+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999998764 457889999998 999999999999999999999985
No 29
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.80 E-value=3.5e-19 Score=115.05 Aligned_cols=74 Identities=66% Similarity=1.159 Sum_probs=68.5
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAW 77 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 77 (223)
|+||+++.||+|+++|++|+++|++|+.+.++...+.++|.+.||..|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 58999999999999999999999999999998877789999999932899999999999999999999999864
No 30
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.79 E-value=4.6e-19 Score=117.37 Aligned_cols=69 Identities=22% Similarity=0.365 Sum_probs=65.9
Q ss_pred CCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCCC
Q 027486 10 WPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWPR 79 (223)
Q Consensus 10 ~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~ 79 (223)
..||||+++|++|+++||+|+.+.+++.+++++|.++||. |+||+|+++|.+|+||.+|++||+++++.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHccC
Confidence 5799999999999999999999999999999999999998 99999999999999999999999999864
No 31
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.79 E-value=5.1e-19 Score=115.09 Aligned_cols=73 Identities=22% Similarity=0.210 Sum_probs=65.7
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCC-CchHHHhhCCCCCccceEee--CCeeccchHHHHHHHHhhC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSN-KSDMLLKYNPVHQKVPVLVH--DEKPIVESTVILEYIEEAW 77 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~--~g~~l~eS~~I~~yL~~~~ 77 (223)
++||+++.||+|++++++|.++||+|+.+.++... ..+++++.||. |+||+|++ +|.+++||.+|++||++++
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 79999999999999999999999999999886542 46789999998 99999996 4789999999999999874
No 32
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.78 E-value=9.8e-19 Score=112.91 Aligned_cols=71 Identities=31% Similarity=0.357 Sum_probs=65.7
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHh
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEE 75 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~ 75 (223)
++||+++.||+|++++++|+++|++|+.+.+++. ...+++.+.||. |+||+|+++|..|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999999999864 346899999998 8999999999999999999999974
No 33
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.78 E-value=1.2e-18 Score=111.62 Aligned_cols=69 Identities=36% Similarity=0.422 Sum_probs=64.8
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEee-CCeeccchHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVH-DEKPIVESTVILEYI 73 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~l~eS~~I~~yL 73 (223)
++||+++.||+|++++++|+++|++|+.+.++...+.+++.+.||. |+||+|++ ||..|+||.+|++|+
T Consensus 1 ~~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 1 PILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred CEEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 4899999999999999999999999999999988778899999998 99999997 499999999999996
No 34
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.78 E-value=5.7e-19 Score=113.65 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=66.7
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHh
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEE 75 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~ 75 (223)
+++||+++.|++|+++|++|.++|++|+.+.++.....+++...||. |+||+|+++|.+++||.+|++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhc
Confidence 47999999999999999999999999999999876556688999998 9999999999999999999999976
No 35
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.76 E-value=3e-18 Score=111.23 Aligned_cols=72 Identities=38% Similarity=0.540 Sum_probs=66.6
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhh
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEA 76 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 76 (223)
++||+++.||+|+++|++|+++|++|+.+.++.. ...++|.+.||. |++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988764 456889999998 99999999999999999999999863
No 36
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.76 E-value=4e-18 Score=110.62 Aligned_cols=73 Identities=29% Similarity=0.360 Sum_probs=66.8
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAW 77 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 77 (223)
++||+++.|++|++++++|+++|++|+.+.++.. ...+++.+.||. |+||+|+++|.+++||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999999865 335789999998 999999999999999999999999874
No 37
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.75 E-value=6.4e-18 Score=111.04 Aligned_cols=73 Identities=29% Similarity=0.458 Sum_probs=66.9
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeC---CeeccchHHHHHHHHhhC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHD---EKPIVESTVILEYIEEAW 77 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~---g~~l~eS~~I~~yL~~~~ 77 (223)
++||+++. |+|++++++|.++|++|+.+.++.. ...++|.+.||. |+||+|+++ |..|+||.+|++||++++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 79999986 9999999999999999999999864 567899999998 999999976 899999999999999998
Q ss_pred C
Q 027486 78 P 78 (223)
Q Consensus 78 ~ 78 (223)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 38
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=6.1e-18 Score=108.81 Aligned_cols=70 Identities=39% Similarity=0.551 Sum_probs=64.8
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
++||+++.||+|++++++|.++|++|+.+.++.. ...+++.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999764 457889999998 999999999999999999999984
No 39
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.74 E-value=6.6e-18 Score=108.71 Aligned_cols=70 Identities=37% Similarity=0.495 Sum_probs=65.3
Q ss_pred eEEeccCCChhHHHHHHHHHH--hCCCceeeecCCCCCchHHHhhCCCCCccceEe-eCCeeccchHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQL--KGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV-HDEKPIVESTVILEYIE 74 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~eS~~I~~yL~ 74 (223)
++||+++.||+|+++|++|++ +|++|+.+.++...+.+++.+.||. |+||+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999877778899999998 9999998 58899999999999985
No 40
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.74 E-value=8.6e-18 Score=108.76 Aligned_cols=70 Identities=27% Similarity=0.336 Sum_probs=65.3
Q ss_pred EEeccCCChhHHHHHHHHHHhCCCceeeecCCC--CCchHHHhhCCCCCccceEee-CCeeccchHHHHHHHHh
Q 027486 5 KLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS--NKSDMLLKYNPVHQKVPVLVH-DEKPIVESTVILEYIEE 75 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~~~vP~L~~-~g~~l~eS~~I~~yL~~ 75 (223)
+||+++.||+|++++++|+++|++|+.+.++.. .+.++|++.||. |++|+|++ +|.+++||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999875 567899999998 99999996 58999999999999976
No 41
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.74 E-value=8e-18 Score=107.75 Aligned_cols=70 Identities=23% Similarity=0.274 Sum_probs=61.5
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeC-CeeccchHHHHHHHHh
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHD-EKPIVESTVILEYIEE 75 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-g~~l~eS~~I~~yL~~ 75 (223)
|+||+++.||+|+|+|++|+++|++|+.+.++... .....+.+|. ++||+|+++ |..++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 58999999999999999999999999999887543 2345678998 899999975 8999999999999974
No 42
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.74 E-value=8.5e-17 Score=114.48 Aligned_cols=123 Identities=45% Similarity=0.724 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHH
Q 027486 88 YDRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVE 167 (223)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~ 167 (223)
.+++++++|+.++++.+.+.+...+...+...+.....+.+.++.| |++|++++|++|+++|+||+++++.+.++....
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~ 80 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVL-EEELGGKPFFGGDTIGYVDIALGSFLGWFRAYE 80 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH-HHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 4688999999999888887776655544555566788899999999 999998999999999999999999998886543
Q ss_pred HHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHHHHHHHH
Q 027486 168 EVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDEMFAYYK 211 (223)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (223)
...+.+......+|++.+|+++++++|++++++.+.+...+.++
T Consensus 81 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 124 (126)
T cd03185 81 EVGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAK 124 (126)
T ss_pred HHcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHH
Confidence 33233322235799999999999999999999999887766544
No 43
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.73 E-value=5.9e-18 Score=108.64 Aligned_cols=71 Identities=25% Similarity=0.218 Sum_probs=63.8
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCC-CchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHh
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSN-KSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEE 75 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~ 75 (223)
++||+++.|++|+++|++|+++|++|+.+.++... ..+.+.+.||. |+||+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988652 23448889998 9999999999999999999999974
No 44
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.73 E-value=1.4e-17 Score=107.23 Aligned_cols=70 Identities=30% Similarity=0.490 Sum_probs=64.2
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
++||+++.||++++++++|+++|++|+.+.++.. ...++|.+.||. |+||+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988753 446889999998 999999999999999999999984
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.73 E-value=1.6e-17 Score=110.98 Aligned_cols=71 Identities=37% Similarity=0.509 Sum_probs=66.2
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeC-CeeccchHHHHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHD-EKPIVESTVILEYIE 74 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-g~~l~eS~~I~~yL~ 74 (223)
.++||+++.||+|++++++|+++|++|+.+.++.....+++.+.||. ++||+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 48999999999999999999999999999999887777889999998 999999976 899999999999985
No 46
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.73 E-value=1.4e-17 Score=107.39 Aligned_cols=70 Identities=37% Similarity=0.454 Sum_probs=63.8
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEe-eCCeeccchHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLV-HDEKPIVESTVILEYIE 74 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~-~~g~~l~eS~~I~~yL~ 74 (223)
++||+++.||+|+++|++|.++|++|+.+.++.. ...+++.+.||. |++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998764 346789999998 9999999 57899999999999985
No 47
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.72 E-value=2.4e-17 Score=107.19 Aligned_cols=73 Identities=32% Similarity=0.423 Sum_probs=65.7
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeC-CeeccchHHHHHHHHhhCC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHD-EKPIVESTVILEYIEEAWP 78 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~-g~~l~eS~~I~~yL~~~~~ 78 (223)
++||+++.| .++++|++|+++|++|+.+.++.. .+.+++.+.||. |++|+|+++ |..++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999976 589999999999999999988865 357899999998 999999976 8999999999999999875
No 48
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.72 E-value=2.8e-17 Score=106.56 Aligned_cols=73 Identities=30% Similarity=0.506 Sum_probs=66.4
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWP 78 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~ 78 (223)
++||+++. +++++++++|+++|++|+.+.++.. .+.+++.+.||. ++||+|+++|..++||.+|++||++++|
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999886 5899999999999999999998864 567899999998 9999999999999999999999999874
No 49
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.71 E-value=3.3e-17 Score=105.35 Aligned_cols=70 Identities=40% Similarity=0.543 Sum_probs=64.8
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
|+||+++.|++|+++|++|+++|++|+.+.+++. ...+++.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999864 456889999998 999999999999999999999984
No 50
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.71 E-value=2.1e-16 Score=121.23 Aligned_cols=177 Identities=24% Similarity=0.266 Sum_probs=125.7
Q ss_pred EEeccC-------CChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhC
Q 027486 5 KLIGAW-------PSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAW 77 (223)
Q Consensus 5 ~Ly~~~-------~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 77 (223)
-||.++ .||||.++..+|+..+||||.+.-.+. ..++. |++|.++-||..+.||.-|..+|.+.+
T Consensus 47 YLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-------~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~hf 118 (281)
T KOG4244|consen 47 YLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-------RRSRN-GTLPFIELNGEHIADSDLIEDRLRKHF 118 (281)
T ss_pred EEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-------eeccC-CCcceEEeCCeeccccHHHHHHHHHHc
Confidence 466654 799999999999999999999966432 24554 999999999999999999999999887
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhhhhh--------------------------------hHH-HHhhcC---------C
Q 027486 78 PRHPLLPKDPYDRAAARFWIKFSDENLA--------------------------------PTF-VAFYIG---------V 115 (223)
Q Consensus 78 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~-~~~~~~---------~ 115 (223)
.-+..+ ++.++++.+.+...++..+. +.+ ++.++. .
T Consensus 119 ~~~~~L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~I 196 (281)
T KOG4244|consen 119 KIPDDL--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGAI 196 (281)
T ss_pred CCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhccc
Confidence 633323 44567777766665553321 111 111110 0
Q ss_pred c-hhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhch
Q 027486 116 G-EEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSH 193 (223)
Q Consensus 116 ~-~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~ 193 (223)
+ =..++..+.+.+-|..+ +..|++.+||+|+++|-+|+.+|+.|..+......--.+++ .+++|+|..|++|+++.
T Consensus 197 G~f~~~Ei~ell~rDlr~i-~~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~l-e~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 197 GDFESAEIDELLHRDLRAI-SDYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLL-EGDFPNLLEYCERIRKE 273 (281)
T ss_pred cCcCHHHHHHHHHHHHHHH-HHHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHH-hhhchHHHHHHHHHHHH
Confidence 0 01233556678888999 99999999999999999999999988777431000011223 47999999999999874
No 51
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.70 E-value=5.3e-17 Score=105.59 Aligned_cols=72 Identities=28% Similarity=0.459 Sum_probs=62.4
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeC----CeeccchHHHHHHHHhhC
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHD----EKPIVESTVILEYIEEAW 77 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~----g~~l~eS~~I~~yL~~~~ 77 (223)
+++||+++.||+|+++|++|.++||+|+.+.++..... + ...||. ++||+|+++ |.+|+||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~~-~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSRK-E-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhHH-H-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 47999999999999999999999999999988754332 3 356997 899999954 789999999999999864
No 52
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.69 E-value=8.2e-17 Score=105.80 Aligned_cols=73 Identities=19% Similarity=0.177 Sum_probs=62.5
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCC----chHHHhh-----CCCCCccceEeeCCeeccchHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNK----SDMLLKY-----NPVHQKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~----~~~~~~~-----~p~~~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
.+|||+..++.|+++|++|+++|++|+.+.+++... .+++... +|+ |+||+|++||.+|+||.||++||+
T Consensus 1 ~~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 1 PTLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred CEEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHh
Confidence 479999999999999999999999999999987531 2444422 298 899999999999999999999999
Q ss_pred hhC
Q 027486 75 EAW 77 (223)
Q Consensus 75 ~~~ 77 (223)
+++
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 864
No 53
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.69 E-value=1.4e-16 Score=103.05 Aligned_cols=67 Identities=28% Similarity=0.431 Sum_probs=60.9
Q ss_pred eEEeccC-------CChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhh
Q 027486 4 VKLIGAW-------PSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEA 76 (223)
Q Consensus 4 ~~Ly~~~-------~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 76 (223)
++||+++ .||+|++++++|+++|++|+.+.++.. +.||. |+||+|+++|.+++||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-------~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-------KRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-------cCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 6899988 689999999999999999999988642 57898 99999999999999999999999998
Q ss_pred CC
Q 027486 77 WP 78 (223)
Q Consensus 77 ~~ 78 (223)
++
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 74
No 54
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.69 E-value=1e-16 Score=102.17 Aligned_cols=65 Identities=48% Similarity=0.603 Sum_probs=56.4
Q ss_pred CChhHHHHHHHHHHhCCCceeeecCC----CCCchHHHhhCCCCCccceEee-CCeeccchHHHHHHHHhh
Q 027486 11 PSPYVYRVIWALQLKGIKYEYVEENL----SNKSDMLLKYNPVHQKVPVLVH-DEKPIVESTVILEYIEEA 76 (223)
Q Consensus 11 ~sp~~~~vr~~l~~~gi~~~~~~v~~----~~~~~~~~~~~p~~~~vP~L~~-~g~~l~eS~~I~~yL~~~ 76 (223)
.||||+|++++|+++|++|+...+.. ..+.++|.+.||. |+||+|++ +|.+++||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988733 3556899999998 99999996 789999999999999874
No 55
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.69 E-value=1.6e-16 Score=103.79 Aligned_cols=72 Identities=22% Similarity=0.274 Sum_probs=62.6
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhC-----CCCCccceEeeCCeeccchHHHHHHHHhhC
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYN-----PVHQKVPVLVHDEKPIVESTVILEYIEEAW 77 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~ 77 (223)
+++||+++.|+.|++++++|+++|++|+.+.++.. +.+.+.+ |. |+||+|++||.+|+||.||++||++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 46899999999999999999999999999988752 3333333 56 899999999999999999999999998
Q ss_pred C
Q 027486 78 P 78 (223)
Q Consensus 78 ~ 78 (223)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 6
No 56
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.66 E-value=5.3e-16 Score=100.49 Aligned_cols=71 Identities=31% Similarity=0.368 Sum_probs=59.3
Q ss_pred EEeccCCChhHHHHHHHHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeC-CeeccchHHHHHHHHh
Q 027486 5 KLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHD-EKPIVESTVILEYIEE 75 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~-g~~l~eS~~I~~yL~~ 75 (223)
+|++++..+++.++|++|+++|++|+.+.++.. .+.++|.+.||..|+||+|+++ |..++||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 455555555999999999999999999999875 3349999999953799999998 9999999999999985
No 57
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.65 E-value=1.5e-15 Score=110.37 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhh-cCCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHH
Q 027486 88 YDRAAARFWIKFSDENLAPTFVAFY-IGVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVV 166 (223)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~ 166 (223)
..++++++|++|..+.+.+.+.... ..+++..+...+.+.+.|+.| |+.|++++|++|+++|+||+++++.+.++...
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L-E~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~ 81 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRL-EELLSDRRYLLGDRLTEADIRLFTTLIRFDAV 81 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHH-HHHHccCCeeeCCCccHHHHHHHHHHHHHHHH
Confidence 3578899999999988877766543 345566677888999999999 99999899999999999999999988766322
Q ss_pred H-HHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHHHHHHHHHHHH
Q 027486 167 E-EVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDEMFAYYKQKRD 215 (223)
Q Consensus 167 ~-~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 215 (223)
. ............||+|.+|++++.++|++++++.......++++..+.
T Consensus 82 ~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 82 YVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred hhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 1 110111111248999999999999999999999988888888887743
No 58
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.65 E-value=2e-15 Score=104.35 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHH
Q 027486 88 YDRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVE 167 (223)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~ 167 (223)
.++++.+.|+.++++.+.+.+...+...++..+.....+.+.|..| |..|++++|++|+++|+||+++++.+.+....
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~- 79 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLAL-APVFAHKPYFMSEEFSLVDCALAPLLWRLPAL- 79 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH-HHHHcCCCcccCCCCcHHHHHHHHHHHHHHHc-
Confidence 4789999999999988777766555444555667788899999999 99999999999999999999999987655321
Q ss_pred HHhcccccCCCCCcHHHHHHHHhhchhhhHhh
Q 027486 168 EVVGVKVLDADSFPRLHAWIGSFRSHPVIKEH 199 (223)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~ 199 (223)
+.+.. ..+|++.+|++++.++|+++++
T Consensus 80 ---~~~~~--~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 80 ---GIELP--KQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred ---CCCCc--ccchHHHHHHHHHHCCHHHHHh
Confidence 43332 3799999999999999999875
No 59
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.65 E-value=4.8e-16 Score=102.77 Aligned_cols=67 Identities=34% Similarity=0.489 Sum_probs=58.7
Q ss_pred CCChhHHHHHHHHHHhCCCceeeecCCCCCc---hHHHhhCCCCCccceEeeC-CeeccchHHHHHHHHhhCC
Q 027486 10 WPSPYVYRVIWALQLKGIKYEYVEENLSNKS---DMLLKYNPVHQKVPVLVHD-EKPIVESTVILEYIEEAWP 78 (223)
Q Consensus 10 ~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~---~~~~~~~p~~~~vP~L~~~-g~~l~eS~~I~~yL~~~~~ 78 (223)
+.||+|+++|++|.++|++|+.+.++..... +++ +.||. |+||+|+++ |.+++||.+|++||++++|
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 6899999999999999999999998865332 334 78998 999999988 8999999999999999875
No 60
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.65 E-value=3e-15 Score=106.28 Aligned_cols=119 Identities=19% Similarity=0.410 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccCC--CCccccCCCchhHHHHHHHHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLGD--KKFFGGNEIGMADLVFGWIAKSFGVV 166 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~--~~~l~G~~~s~aD~~~~~~l~~~~~~ 166 (223)
++++.+.|+.+++.. .+.+...+.. ++..++..+.+.+.|+.| |+.|++ ++|++|+++|+||+++++.+.++...
T Consensus 2 ~ra~~r~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~l-e~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~ 78 (124)
T cd03184 2 EKAQQKLLLERFSKV-VSAFYKLLGA-PSDREEKKAELRSALENL-EEELTKRGTPFFGGDSPGMVDYMIWPWFERLEAL 78 (124)
T ss_pred hHHHHHHHHHHHhhh-hHHHHHHHhc-cccchhhHHHHHHHHHHH-HHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHH
Confidence 588899999999754 4444444444 666678888999999999 999975 89999999999999999988877544
Q ss_pred HHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHHHHHHHH
Q 027486 167 EEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDEMFAYYK 211 (223)
Q Consensus 167 ~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (223)
....+ .....+.+|+|.+|++++.++|++++++.+.+.+..+++
T Consensus 79 ~~~~~-~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~ 122 (124)
T cd03184 79 KLLLG-YEFPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLK 122 (124)
T ss_pred Hhhcc-ccCCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHh
Confidence 22212 112246899999999999999999999999998888775
No 61
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.63 E-value=5.1e-15 Score=103.68 Aligned_cols=110 Identities=22% Similarity=0.337 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHHHHHhhhhhhHHHHhhc---CCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHH
Q 027486 86 DPYDRAAARFWIKFSDENLAPTFVAFYI---GVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKS 162 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~ 162 (223)
++..++++++|+.+.+..+.+.+..... ..+...+.....+.+.+..| |++|++++|++|+++|+||+++++.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l-e~~L~~~~yl~Gd~~tlADi~l~~~l~~ 81 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDL-EARLQQHSYLLGDKPSLADWAIFPFVRQ 81 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHH-HHHHccCCccCCCCccHHHHHHHHHHHH
Confidence 6788999999999999888888765332 12224667788999999999 9999989999999999999999998776
Q ss_pred HHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhC
Q 027486 163 FGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHL 200 (223)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (223)
+... ........++|+|.+|++++.++|++++++
T Consensus 82 ~~~~----~~~~~~~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 82 FAHV----DPKWFDQSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHHh----hhcccCcccCHHHHHHHHHHHcChHHHhhC
Confidence 6432 111122358999999999999999999753
No 62
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.62 E-value=1.6e-15 Score=96.12 Aligned_cols=70 Identities=40% Similarity=0.503 Sum_probs=63.1
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCch-HHHhhCCCCCccceEeeCCeeccchHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSD-MLLKYNPVHQKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~-~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
++||+++.||+|++++++|+++|++|+.+.++...... ++.+.+|. +++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999998664333 48889998 899999999999999999999984
No 63
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.62 E-value=1.9e-15 Score=97.17 Aligned_cols=66 Identities=29% Similarity=0.397 Sum_probs=60.0
Q ss_pred ccCCChhHHHHHHHHHHhCCCceeeecCCCC--CchHHHhhCCCCCccceEeeCCeeccchHHHHHHHH
Q 027486 8 GAWPSPYVYRVIWALQLKGIKYEYVEENLSN--KSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 8 ~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
....||++++++++|+++|++|+.+.++... ..++|.+.||. |+||+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 4678999999999999999999999998753 45889999998 999999999999999999999984
No 64
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.58 E-value=8.2e-15 Score=93.93 Aligned_cols=65 Identities=29% Similarity=0.379 Sum_probs=57.9
Q ss_pred eEEeccC-------CChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhh
Q 027486 4 VKLIGAW-------PSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEA 76 (223)
Q Consensus 4 ~~Ly~~~-------~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 76 (223)
+.||.++ .||+|++++++|+++||||+.+.++... .||. |+||+|+++|..++||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 3677766 8999999999999999999999887532 7897 89999999999999999999999874
No 65
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.58 E-value=1.6e-14 Score=100.81 Aligned_cols=104 Identities=19% Similarity=0.364 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhcCC---------chhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFYIGV---------GEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWI 159 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~ 159 (223)
+++++++|+.+.++.+.+.+...+... +...+...+.+.+.+..| |+.|++++|++|+++|+||+++++.
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~l~G~~~t~aDi~~~~~ 80 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYL-DAQLAGGPYLLGDRFSVADAYLFVV 80 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHH-HHHhcCCCeeeCCCcchHHHHHHHH
Confidence 478899999999888887765433321 222355677899999999 9999988999999999999999998
Q ss_pred HHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhC
Q 027486 160 AKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHL 200 (223)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (223)
+.++... +.. ..++|++.+|++++.++|++++++
T Consensus 81 ~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 81 LRWAPGV----GLD---LSDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHhhc----CCC---hhhChHHHHHHHHHHhCHHhHhhC
Confidence 8877432 322 347999999999999999999864
No 66
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.5e-14 Score=111.70 Aligned_cols=196 Identities=20% Similarity=0.268 Sum_probs=142.1
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCC----ceeeecCCCCCc----------------------hHHHhhCCC---CCcc
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIK----YEYVEENLSNKS----------------------DMLLKYNPV---HQKV 53 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~----~~~~~v~~~~~~----------------------~~~~~~~p~---~~~v 53 (223)
.+.||..-.|||++|..++-+++|++ +.++.-.+.... +-|..-.|. .-+|
T Consensus 51 RYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTV 130 (324)
T COG0435 51 RYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTV 130 (324)
T ss_pred eEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeE
Confidence 47899999999999999999999985 333322222111 111122231 1469
Q ss_pred ceEeeCC---eeccchHHHHHHHHhhCC-----CCCCCCCCHHHHHHHHHHHHHHhhhhhhHHH-HhhcCCchhHHHHHH
Q 027486 54 PVLVHDE---KPIVESTVILEYIEEAWP-----RHPLLPKDPYDRAAARFWIKFSDENLAPTFV-AFYIGVGEEHEKAIK 124 (223)
Q Consensus 54 P~L~~~g---~~l~eS~~I~~yL~~~~~-----~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 124 (223)
|||.|.. .+=.||..|++.+...+. ...++|.+ .+.+++.+.+++.+.+.+-++ .-|-...++-++..+
T Consensus 131 PVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~~ 208 (324)
T COG0435 131 PVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAVK 208 (324)
T ss_pred EEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCceeeecccchHHHHHHHHH
Confidence 9999643 344799999999876553 23477764 577888888887766544433 344456677788889
Q ss_pred HHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHH-HHhcccccCCCCCcHHHHHHHHhhchhhhHhhCC
Q 027486 125 EAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVE-EVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLP 201 (223)
Q Consensus 125 ~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 201 (223)
.+-+.|+.| |..|++++|++|+++|-||+-+++.|-++.... ..+.+......+||+|..|...+-+.|.|.++.-
T Consensus 209 ~lF~~Ld~l-E~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~d 285 (324)
T COG0435 209 KLFEALDKL-EQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETVD 285 (324)
T ss_pred HHHHHHHHH-HHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccccccc
Confidence 999999999 999999999999999999999999998884331 1234444444589999999999999999998873
No 67
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.55 E-value=1e-13 Score=98.70 Aligned_cols=108 Identities=19% Similarity=0.233 Sum_probs=84.4
Q ss_pred HhhhhhhHHHHhhcC-CchhHHHHHHHHHHHHHHHHHcccCC----------------CCccccCCCchhHHHHHHHHHH
Q 027486 100 SDENLAPTFVAFYIG-VGEEHEKAIKEAKEKLKIIEEQGLGD----------------KKFFGGNEIGMADLVFGWIAKS 162 (223)
Q Consensus 100 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~e~~L~~----------------~~~l~G~~~s~aD~~~~~~l~~ 162 (223)
..+.+++.+..++.+ +++..+...+.+...|..| |.+|++ ++|++|+++|+||+.+++.+.+
T Consensus 7 ~~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~l-d~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~ 85 (134)
T cd03198 7 AGEDIFAKFSAYIKNSNPALNENLEKGLLKALKKL-DDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHI 85 (134)
T ss_pred hHHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHH-HHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 344556777666653 4566677889999999999 999986 6799999999999999999887
Q ss_pred HHHHHHH-hcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHHHHHHH
Q 027486 163 FGVVEEV-VGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDEMFAYY 210 (223)
Q Consensus 163 ~~~~~~~-~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~ 210 (223)
+...... .+... ...+|+|.+|++++.+||+|++++.....+...+
T Consensus 86 ~~~~~~~~~g~~i--~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~ 132 (134)
T cd03198 86 VKVVAKKYRNFEI--PADLTGLWRYLKNAYQREEFTNTCPADQEIELAY 132 (134)
T ss_pred HHHHHHhhcCCCc--cccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHh
Confidence 7543211 13333 3589999999999999999999999887776554
No 68
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.52 E-value=1.4e-13 Score=97.22 Aligned_cols=110 Identities=17% Similarity=0.251 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhcCC-chhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFYIGV-GEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVE 167 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~ 167 (223)
++++++++++.+.+.........+..+ +...+...+.+.+.+..| |++|++++|++|+++|+||+++++.+.++...
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~- 79 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICYSPDFEKLKPDYLAKLPDKLKLF-SDFLGDRPWFAGDKITYVDFLLYEALDQHRIF- 79 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHH-HHHhCCCCCcCCCCccHHHHHHHHHHHHHHHh-
Confidence 467788888877776433322223222 223344567788999999 99999889999999999999999998888532
Q ss_pred HHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHH
Q 027486 168 EVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDE 205 (223)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (223)
+... ...+|+|.+|++++.++|++++++.+++.
T Consensus 80 ---~~~~--~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 80 ---EPDC--LDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred ---Cccc--cccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 2222 34899999999999999999999887754
No 69
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.52 E-value=3.5e-13 Score=95.10 Aligned_cols=114 Identities=23% Similarity=0.395 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHHHhhhhhhHH-HHhhcCCchhHHHHHHHHHHHHHHHHHcccC---CCCccccCCCchhHHHHHHHHH
Q 027486 86 DPYDRAAARFWIKFSDENLAPTF-VAFYIGVGEEHEKAIKEAKEKLKIIEEQGLG---DKKFFGGNEIGMADLVFGWIAK 161 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~---~~~~l~G~~~s~aD~~~~~~l~ 161 (223)
++.+++++++++.+... +...+ .+.+.... .+++.+.++.| |+.|+ +++|++| ++|+||+++++.+.
T Consensus 1 d~~~ra~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~l~~L-e~~L~~~~~~~fl~G-~~tlADi~l~~~~~ 71 (120)
T cd03203 1 DPAKREFADELLAYTDA-FTKALYSSLIKGDP------SAEAAAALDYI-ENALSKFDDGPFFLG-QFSLVDIAYVPFIE 71 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCc------hHHHHHHHHHH-HHHHHhcCCCCCcCC-CccHHHHHHHHHHH
Confidence 46688999999888333 22222 23332211 22345566777 66665 5899999 99999999999887
Q ss_pred HHHHH-HHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHHHHHHH
Q 027486 162 SFGVV-EEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDEMFAYY 210 (223)
Q Consensus 162 ~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~ 210 (223)
++... ....+.++. +++|+|.+|++++.++|+++++.++.+++..++
T Consensus 72 ~~~~~~~~~~~~~~~--~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 72 RFQIFLSELFNYDIT--EGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHHHhcCcccc--ccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 76431 122244432 489999999999999999999999988877654
No 70
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.51 E-value=1.1e-13 Score=98.49 Aligned_cols=109 Identities=22% Similarity=0.242 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccCC---CCccccCCCchhHHHHHHHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLGD---KKFFGGNEIGMADLVFGWIAKSFGV 165 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~---~~~l~G~~~s~aD~~~~~~l~~~~~ 165 (223)
++++++.+++.+.+.....+...+...+...+...+.+.+.|..| |+.|++ ++|++|+++|+||+++++.+.++..
T Consensus 3 e~~~vd~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~ 81 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYVRMIYQNYEAGKDDYIKDLPEQLKPF-EKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLV 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHH
Confidence 567788877777665433332222222334456677788999999 999973 5899999999999999998888753
Q ss_pred HHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChH
Q 027486 166 VEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCD 204 (223)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (223)
. .... ...+|+|.+|++++.++|++++++....
T Consensus 82 ~----~~~~--~~~~P~l~~~~~rv~~~p~v~~~~~~~~ 114 (126)
T cd03210 82 L----APGC--LDAFPLLKAFVERLSARPKLKAYLESDA 114 (126)
T ss_pred h----ChHh--hhcChHHHHHHHHHHhCcHHHHHHhCcC
Confidence 2 2222 2489999999999999999999887654
No 71
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.50 E-value=1.6e-13 Score=96.34 Aligned_cols=106 Identities=23% Similarity=0.350 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHH-----hhc------CCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVA-----FYI------GVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFG 157 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~ 157 (223)
+++++.+|+.+....+.+.+.. .+. .++...+.....+.+.++.| |++|++++|++|+++|+||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aDi~l~ 80 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVY-EARLSKSKYLAGDSFTLADLSHL 80 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHH-HHHcccCcccCCCCccHHHHHHH
Confidence 4677888888877666555422 111 12333455678899999999 99999899999999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhC
Q 027486 158 WIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHL 200 (223)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (223)
+++.++... +.... ...+|++.+|++++.++|++++++
T Consensus 81 ~~~~~~~~~----~~~~~-~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 81 PYLQYLMAT----PFAKL-FDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHHc----cchhh-hhcCchHHHHHHHHHhCHHHHhhC
Confidence 988887431 11111 347999999999999999998764
No 72
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.50 E-value=2.7e-13 Score=95.05 Aligned_cols=104 Identities=19% Similarity=0.297 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHHhhhhhhHHHHhhc-------------CCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchh
Q 027486 86 DPYDRAAARFWIKFSDENLAPTFVAFYI-------------GVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMA 152 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~a 152 (223)
++.+++++++|+.++++.+.+.+...+. .++...++...++.+.|+.| |+.|++++|++|+++|+|
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l-e~~L~~~~~l~gd~~t~a 79 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYL-DTRLAGSPYVAGDRFTIA 79 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHH-HHHhcCCCcccCCCCCHH
Confidence 4678999999999988777666543321 11233466778899999999 999998899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhh
Q 027486 153 DLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVI 196 (223)
Q Consensus 153 D~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (223)
|+++++.+.++... +.++ ...+|+|.+|++++.++|++
T Consensus 80 Di~l~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 80 DITAFVGLDFAKVV----KLRV--PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHHhHHHHhc----CCCC--ccccHHHHHHHHHHHhccCC
Confidence 99999999877542 4443 24899999999999999974
No 73
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.50 E-value=7.6e-14 Score=97.29 Aligned_cols=104 Identities=22% Similarity=0.469 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHh-----hc--CCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHH
Q 027486 90 RAAARFWIKFSDENLAPTFVAF-----YI--GVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKS 162 (223)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~ 162 (223)
++++++|+.|.+..+.+.+... +. .++...+.....+.+.++.+ |+.|++++|++|+++|+||+++++.+.+
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aDi~l~~~~~~ 80 (113)
T cd03178 2 RYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVL-DKRLAGRDYLAGDEYSIADIAIFPWVRR 80 (113)
T ss_pred hHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHH-HHHHccCCcccCCCCCeeeeeHHHHHHH
Confidence 6788899998887776654321 11 22444566778899999999 9999988999999999999999998888
Q ss_pred HHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhC
Q 027486 163 FGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHL 200 (223)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (223)
.... +... ...+|++.+|++++.++|++++++
T Consensus 81 ~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 81 LEWI----GIDD--LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHhc----cccc--hhhchHHHHHHHHHhhCHHHHHhc
Confidence 7533 2222 358999999999999999999865
No 74
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.49 E-value=1.7e-13 Score=96.94 Aligned_cols=110 Identities=17% Similarity=0.359 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhhc-------CCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHH
Q 027486 90 RAAARFWIKFSDENLAPTFVAFYI-------GVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKS 162 (223)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~ 162 (223)
++++++|+.++++.+.+.+...+. .+....+...+.+.+.|+.| |+.|++++|++|+++|+||+++++++.+
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~l~G~~~siaDi~l~~~~~~ 80 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVL-EERLLKRTYLVGERLTLADIFVAGALLL 80 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHH-HHHHccCceeccCCccHHHHHHHHHHHH
Confidence 677889999988877776543221 12334566678899999999 9999989999999999999999998888
Q ss_pred HHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChH
Q 027486 163 FGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCD 204 (223)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 204 (223)
..... ..... ...+|++.+|++++.++|+|++++.+.+
T Consensus 81 ~~~~~--~~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 81 GFTYV--FDKEW--RAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHHH--cCHHH--HHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 73321 01111 2478999999999999999999887654
No 75
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.49 E-value=4.3e-13 Score=94.63 Aligned_cols=105 Identities=15% Similarity=0.259 Sum_probs=77.5
Q ss_pred hhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccCC-CCccccCCCchhHHHHHHHHHHHHHHHHH-hcccccCCCC
Q 027486 102 ENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLGD-KKFFGGNEIGMADLVFGWIAKSFGVVEEV-VGVKVLDADS 179 (223)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~-~~~l~G~~~s~aD~~~~~~l~~~~~~~~~-~~~~~~~~~~ 179 (223)
+.+.+.+..++..... .++..+.+.+.|..| |..|++ ++|++|+++|+||+++++.+.++...... .+... ...
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~L-e~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~--~~~ 87 (121)
T cd03201 12 SKIFSTFVGFLKSKDS-NDGTEQALLDELEAL-EDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSV--PES 87 (121)
T ss_pred HHHHHHHHHHHHCCcH-HHHHHHHHHHHHHHH-HHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCC--ccc
Confidence 3345555554443332 255667889999999 889984 79999999999999999987777532121 12222 358
Q ss_pred CcHHHHHHHHhhchhhhHhhCCChHHHHHHH
Q 027486 180 FPRLHAWIGSFRSHPVIKEHLPDCDEMFAYY 210 (223)
Q Consensus 180 ~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~ 210 (223)
+|+|.+|++++.+||+|+++++..+++...+
T Consensus 88 ~P~l~~w~~rl~~rps~~~t~~~~~~~~~~~ 118 (121)
T cd03201 88 LTSVKSYMKALFSRESFVKTKAEKEDVIAGW 118 (121)
T ss_pred chHHHHHHHHHHCCchhhhcCCCHHHHHHHh
Confidence 9999999999999999999999888776554
No 76
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.48 E-value=3.6e-13 Score=94.77 Aligned_cols=103 Identities=21% Similarity=0.452 Sum_probs=79.4
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhhHHHH-hhc---CC-----------chhHHHHHHHHHHHHHHHHHcccCCCCccccCC
Q 027486 84 PKDPYDRAAARFWIKFSDENLAPTFVA-FYI---GV-----------GEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNE 148 (223)
Q Consensus 84 p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~-----------~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~ 148 (223)
|.++.+++++++|+.+..+.+.+.+.. .+. .. +...+.....+.+.|+.| |++|++++|++|++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~Gd~ 80 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFL-EDRLAKKGYFVGDK 80 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHH-HHHHccCCCCCCCC
Confidence 568889999999999998877776532 111 11 122234456789999999 99999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchh
Q 027486 149 IGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHP 194 (223)
Q Consensus 149 ~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 194 (223)
+|+||+++++.+.++... +. ....+|+|.+|+++++++|
T Consensus 81 ~t~ADi~l~~~~~~~~~~----~~---~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 81 LTAADIMMSFPLEAALAR----GP---LLEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCHHHHHHHHHHHHHHHc----Cc---ccccCchHHHHHHHHhcCC
Confidence 999999999888877432 22 2458999999999999886
No 77
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.48 E-value=2e-13 Score=96.06 Aligned_cols=105 Identities=20% Similarity=0.418 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhc----CCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFYI----GVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFG 164 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~ 164 (223)
+++++++|+.|..+.+.+.+...+. .++...+...+++.+.|..| |++|++++|++|+++|+||+++++.+.++.
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~s~aDi~l~~~~~~~~ 80 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFL-ETFLEGSDYVAGDQLTIADLSLVATVSTLE 80 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH-HHHHccCCeeCCCCcCHHHHHHHHHHHHHH
Confidence 4778889998887766655432221 22344566788899999999 999998899999999999999999998885
Q ss_pred HHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhC
Q 027486 165 VVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHL 200 (223)
Q Consensus 165 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (223)
.. . +.+ ...+|+|.+|++++.++|++++..
T Consensus 81 ~~--~-~~~---~~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 81 AL--L-PLD---LSKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred Hh--c-CCC---hhhCchHHHHHHHHHcccchHHHH
Confidence 31 1 322 347999999999999999999844
No 78
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.47 E-value=4.7e-13 Score=96.60 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhcCCchhHH----HH-HHHHHHHHHHHHHcccC--CCCccccCCCchhHHHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFYIGVGEEHE----KA-IKEAKEKLKIIEEQGLG--DKKFFGGNEIGMADLVFGWIAK 161 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~l~~l~e~~L~--~~~~l~G~~~s~aD~~~~~~l~ 161 (223)
+.+.++++++.+.+.+...+...+. +++... .. .+.+.+.|..| |++|+ +++|++|+++|+||+++++.+.
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l-E~~L~~~~~~~l~G~~~T~ADi~l~~~l~ 80 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPFL-PPEEKEAKLALIKEKAKNRYFPVF-EKVLKSHGQDFLVGNKLSRADIHLLEAIL 80 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC-ChhhHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCeeeCCCCCHHHHHHHHHHH
Confidence 5778888888887775554433332 222222 22 23457899999 99998 7789999999999999999998
Q ss_pred HHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCChHH
Q 027486 162 SFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPDCDE 205 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~ 205 (223)
++... .... ...+|+|.+|++++.++|++++++.....
T Consensus 81 ~~~~~----~~~~--l~~~P~l~~~~~rv~~~P~vk~~~~~~~~ 118 (137)
T cd03208 81 MVEEL----DPSL--LSDFPLLQAFKTRISNLPTIKKFLQPGSP 118 (137)
T ss_pred HHHHh----chhh--hccChHHHHHHHHHHcCHHHHHHHhcCCC
Confidence 87532 2222 34899999999999999999999876553
No 79
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.46 E-value=2.7e-13 Score=95.76 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhhhhhhHH----HHhhc-C---Cchh-HHHHHHHHHHHHHHHHHcccC--CCCccccCCCchhHHHH
Q 027486 88 YDRAAARFWIKFSDENLAPTF----VAFYI-G---VGEE-HEKAIKEAKEKLKIIEEQGLG--DKKFFGGNEIGMADLVF 156 (223)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~----~~~~~-~---~~~~-~~~~~~~~~~~l~~l~e~~L~--~~~~l~G~~~s~aD~~~ 156 (223)
.+++++++|+.++++.+.+.+ ...+. . ++.. .+...+.+.+.|..| |..|+ +++|++|+++|+||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~~~l~G~~~t~ADi~~ 80 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAAL-EKLLAQTAGKFCFGDEPTLADICL 80 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHhcCCCeecCCcCCHHHHHH
Confidence 468899999999987766542 11111 1 1122 233446688999999 99997 45799999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCC
Q 027486 157 GWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPD 202 (223)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (223)
++.+.+.... +.+ ...+|+|.+|++++.++|+|+++++.
T Consensus 81 ~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p~~~~~~~~ 119 (121)
T cd03191 81 VPQVYNARRF----GVD---LSPYPTIARINEACLELPAFQAAHPD 119 (121)
T ss_pred HHHHHHHHHh----CCC---cccCcHHHHHHHHHHhChhHHHhCcC
Confidence 9988776432 322 25899999999999999999998764
No 80
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.45 E-value=6.8e-13 Score=91.86 Aligned_cols=100 Identities=19% Similarity=0.433 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhh----cC-----CchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFY----IG-----VGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWI 159 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~ 159 (223)
+++++++|+.+..+.+.+.+...+ .. ++...+...+.+.+.|+.| |++|++++|++|+++|+||++++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-E~~L~~~~~l~g~~~t~aDi~~~~~ 80 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAIL-DAQLAGRPYLAGDRFTLADIPLGCS 80 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHH-HHHhCCCCcccCCCCCHHHHHHHHH
Confidence 467889999998888777764322 11 1223355678899999999 9999989999999999999999988
Q ss_pred HHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhh
Q 027486 160 AKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVI 196 (223)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (223)
+...... +. ....+|+|.+|+++++++|+|
T Consensus 81 ~~~~~~~----~~---~~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 81 AYRWFEL----PI---ERPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHc----cc---ccccCchHHHHHHHHHhCCCC
Confidence 7544211 21 145899999999999999975
No 81
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.1e-13 Score=104.42 Aligned_cols=204 Identities=22% Similarity=0.266 Sum_probs=140.2
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCC----ceeeecCCCCCc------------------------------hHHHhhCC
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIK----YEYVEENLSNKS------------------------------DMLLKYNP 48 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~----~~~~~v~~~~~~------------------------------~~~~~~~p 48 (223)
.+.||..-.|||++|+.++.+++|+. +..+.--++++. +-|..-+|
T Consensus 37 ryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p 116 (319)
T KOG2903|consen 37 RYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASP 116 (319)
T ss_pred eEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCC
Confidence 47899999999999999999999974 433322011100 11111122
Q ss_pred CC---CccceEeeC---CeeccchHHHHHHHHhh---------CCCCCCCCCCHHHHHHHHHHHHHHhhhhhhHHHH-hh
Q 027486 49 VH---QKVPVLVHD---EKPIVESTVILEYIEEA---------WPRHPLLPKDPYDRAAARFWIKFSDENLAPTFVA-FY 112 (223)
Q Consensus 49 ~~---~~vP~L~~~---g~~l~eS~~I~~yL~~~---------~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 112 (223)
.+ -+||||.|- ..+=.||..|++.+... .+.-.|+|.+ .+++++.+-+|+.+.+..-++. -|
T Consensus 117 ~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGVYk~GF 194 (319)
T KOG2903|consen 117 NYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGVYKCGF 194 (319)
T ss_pred CCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCceeeecc
Confidence 11 469999964 34458999999999832 2233466664 5788888888877665444432 33
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHcccCCCC--ccccCCCchhHHHHHHHHHHHHHHHH-Hhcc--cccCCCCCcHHHHHH
Q 027486 113 IGVGEEHEKAIKEAKEKLKIIEEQGLGDKK--FFGGNEIGMADLVFGWIAKSFGVVEE-VVGV--KVLDADSFPRLHAWI 187 (223)
Q Consensus 113 ~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~--~l~G~~~s~aD~~~~~~l~~~~~~~~-~~~~--~~~~~~~~p~l~~w~ 187 (223)
-...+.-+...+++-+.|+.+ |..|+.+. |++|+++|-||+.+++.+-++..... .+.+ ..+ +.+||+|..|.
T Consensus 195 A~~~e~Ye~~V~~lfe~LDr~-E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~i-r~~Yp~l~~~l 272 (319)
T KOG2903|consen 195 AEKQEAYEEEVNQLFEALDRC-EDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTI-RDEYPNLHNWL 272 (319)
T ss_pred ccccchHHHHHHHHHHHHHHH-HHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhh-hccCcHHHHHH
Confidence 355667788888899999999 99999766 99999999999999998887743211 1122 223 45999999999
Q ss_pred HHhhc-hhhhHhhCCChHHHHHHH
Q 027486 188 GSFRS-HPVIKEHLPDCDEMFAYY 210 (223)
Q Consensus 188 ~~~~~-~p~~~~~~~~~~~~~~~~ 210 (223)
+.+-. .|++..+..-......|+
T Consensus 273 k~iY~~~~~~~~Ttd~~hIk~~Y~ 296 (319)
T KOG2903|consen 273 KNIYWNIPGFSSTTDFNHIKLHYY 296 (319)
T ss_pred HHHHhhccchhhccchhHHhhhhc
Confidence 99877 999998764433344443
No 82
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.41 E-value=1.4e-12 Score=92.65 Aligned_cols=104 Identities=27% Similarity=0.364 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHH---------hhc---CCchhHHHHHHHHHHHHHHHHHcc-cCCCCccccCCCchhHHHH
Q 027486 90 RAAARFWIKFSDENLAPTFVA---------FYI---GVGEEHEKAIKEAKEKLKIIEEQG-LGDKKFFGGNEIGMADLVF 156 (223)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~l~~l~e~~-L~~~~~l~G~~~s~aD~~~ 156 (223)
++++++|+.+..+.+.+.+.. .+. .++...+...+.+.+.++.+ |++ +++++|++|+++|+||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~~l~Gd~~t~ADi~l 80 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLL-ENYFLKDKPFLAGDEISIADLSA 80 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHhcCCCcccCCCCCHHHHHH
Confidence 345667777766555443221 111 12334456677899999999 886 5667899999999999999
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhc--hhhhHhhC
Q 027486 157 GWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRS--HPVIKEHL 200 (223)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~--~p~~~~~~ 200 (223)
++.+.+.... +.+. ...+|+|.+|++++.+ +|++++..
T Consensus 81 ~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 81 VCEIMQPEAA----GYDV--FEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHHhc----CCcc--cccCchHHHHHHHHHHhcchhHHHHH
Confidence 9987766432 4333 3589999999999999 99999754
No 83
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.40 E-value=1.8e-12 Score=87.72 Aligned_cols=95 Identities=19% Similarity=0.310 Sum_probs=74.4
Q ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCC
Q 027486 70 LEYIEEAWPRHPLLPKDPYDRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEI 149 (223)
Q Consensus 70 ~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~ 149 (223)
++||++..+ ++|+++.+.+.++.|+++....+.. ...+++.+.+..+ |++|++++|++|+++
T Consensus 1 ~r~~~~~~~---~~~~~~~~~~~vd~~~d~~~~~l~~--------------~~~~~~~~~l~~l-e~~L~~~~fl~Gd~~ 62 (96)
T cd03200 1 ARFLYRLLG---PAPNAPNAATNIDSWVDTAIFQLAE--------------GSSKEKAAVLRAL-NSALGRSPWLVGSEF 62 (96)
T ss_pred CchHHHHhc---ccCCCchHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHH-HHHHcCCCccCCCCC
Confidence 478888833 8999999999999999977533320 1234556788899 999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhc
Q 027486 150 GMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRS 192 (223)
Q Consensus 150 s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (223)
|+||+++++.+.+. +.. ...+|+|.+|++++.+
T Consensus 63 tiADi~l~~~l~~~-------~~~---~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 63 TVADIVSWCALLQT-------GLA---SAAPANVQRWLKSCEN 95 (96)
T ss_pred CHHHHHHHHHHHHc-------ccc---cccChHHHHHHHHHHh
Confidence 99999999887543 211 2479999999999975
No 84
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.38 E-value=1.1e-12 Score=89.85 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhh
Q 027486 117 EEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVI 196 (223)
Q Consensus 117 ~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (223)
+..+....++.+.++.| |.+|++++|++|+++|+||+++++.+.+.... + . ...+|+|.+|+++++++|++
T Consensus 26 ~~~~~~~~~~~~~l~~l-e~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~----~--~--~~~~p~l~~w~~~~~~~p~~ 96 (103)
T cd03207 26 PARMAGFGSYDDVLAAL-EQALAKGPYLLGERFTAADVLVGSPLGWGLQF----G--L--LPERPAFDAYIARITDRPAF 96 (103)
T ss_pred chhhhhhhhHHHHHHHH-HHHHccCCcccCCccCHHHHHHHHHHHHHHHc----C--C--CCCChHHHHHHHHHHcCHHH
Confidence 34555678899999999 99999899999999999999999999887432 2 2 24899999999999999999
Q ss_pred HhhCC
Q 027486 197 KEHLP 201 (223)
Q Consensus 197 ~~~~~ 201 (223)
+++..
T Consensus 97 ~~~~~ 101 (103)
T cd03207 97 QRAAA 101 (103)
T ss_pred HHHhc
Confidence 98765
No 85
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.38 E-value=4.3e-12 Score=88.68 Aligned_cols=104 Identities=22% Similarity=0.213 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHh-----hcC--CchhHHHHHHHHHHHHHHHHHcccC-CCCccccCCCchhHHHHHHH
Q 027486 88 YDRAAARFWIKFSDENLAPTFVAF-----YIG--VGEEHEKAIKEAKEKLKIIEEQGLG-DKKFFGGNEIGMADLVFGWI 159 (223)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~l~~l~e~~L~-~~~~l~G~~~s~aD~~~~~~ 159 (223)
.++++.+.|+.++++.+.+..... +.. .+...+...+.+.+.++.+ |..|+ +++|++| .+|+||++++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-e~~l~~~~~~l~G-~fSiAD~~l~~~ 79 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVA-EALLPPGAANLFG-EWCIADTDLALM 79 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHH-HHHHhcCCCcccC-CccHHHHHHHHH
Confidence 478999999999999888753211 111 1123456677788899999 88885 5589999 599999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCCC
Q 027486 160 AKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLPD 202 (223)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~ 202 (223)
+.|+... |.++ . |++.+|++++.+||+|++.++.
T Consensus 80 ~~~~~~~----g~~l----~-p~l~ay~~r~~~rPa~~~~~~~ 113 (114)
T cd03195 80 LNRLVLN----GDPV----P-ERLRDYARRQWQRPSVQAWLAL 113 (114)
T ss_pred HHHHHHc----CCCC----C-HHHHHHHHHHHCCHHHHHHHhc
Confidence 9998543 5443 2 9999999999999999997743
No 86
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.37 E-value=2.3e-12 Score=86.89 Aligned_cols=71 Identities=21% Similarity=0.409 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchh
Q 027486 118 EHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHP 194 (223)
Q Consensus 118 ~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 194 (223)
..+.....+.+.|..+ |+.|++++|++|+++|+||+++++.+.++... +.... .+++|+|.+|++++.++|
T Consensus 25 ~~~~~~~~~~~~l~~l-e~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~----~~~~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 25 MVEEARAKVPRYLEVL-EKRLKGGPYLVGDKLTIADIALFPMLDWLERL----GPDFL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHH----TTTTT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHH-HHHHcCCCeeeccCCchhHHHHHHHHHHHHHh----CCCcc-cccCHHHHHHHHHHHcCC
Confidence 4566788899999999 99999999999999999999999999988654 43333 259999999999999987
No 87
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.33 E-value=3.1e-12 Score=87.27 Aligned_cols=71 Identities=21% Similarity=0.442 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhh
Q 027486 118 EHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVI 196 (223)
Q Consensus 118 ~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (223)
..+....++.+.++.+ |+.|++++|++|+++|+||+++++.+.+.... + ....++|+|.+|++++.++|++
T Consensus 30 ~~~~~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~----~---~~~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 30 DKETAIARAHRLLRLL-EEHLAGRDWLAGDRPTIADVAVYPYVALAPEG----G---VDLEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHH-HHHHccCCccCCCCCCHHHHHHHHHHHHHhcc----C---CChhhCcHHHHHHHHHHhCcCC
Confidence 4456778899999999 99999999999999999999999988664221 2 2235899999999999999975
No 88
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=9.7e-11 Score=86.99 Aligned_cols=173 Identities=13% Similarity=0.158 Sum_probs=123.2
Q ss_pred CCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCCCCCCCC-CCHH
Q 027486 10 WPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWPRHPLLP-KDPY 88 (223)
Q Consensus 10 ~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~l~p-~~~~ 88 (223)
+....|..|..+|+++++||.++.-+ +.+| .+|- |+||.|..|.+.++|-.+|+.++..+.-. +.+ -+..
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~-G~vPllr~g~~~~aef~pIV~fVeak~~~--l~s~lsE~ 102 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGVT--LTSWLSED 102 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecC----Cccc--cCCC-CCCceeeecchhhhhhhHHHHHHHHhccc--hhhhhhhH
Confidence 34456899999999999999999653 3344 6785 89999999999999999999999988531 221 2445
Q ss_pred HHHHHHHHHHHHhhhhhhHHHH---------------hhc---------------------------CCchhHHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVA---------------FYI---------------------------GVGEEHEKAIKEA 126 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~---------------------------~~~~~~~~~~~~~ 126 (223)
+++..+..+++++..+..+-.. .++ =+....++..+++
T Consensus 103 qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~v 182 (257)
T KOG3027|consen 103 QKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQV 182 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHH
Confidence 6777777777766653222100 000 0222345567788
Q ss_pred HHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHH-HhcccccCCCCCcHHHHHHHHhhch
Q 027486 127 KEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEE-VVGVKVLDADSFPRLHAWIGSFRSH 193 (223)
Q Consensus 127 ~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~-~~~~~~~~~~~~p~l~~w~~~~~~~ 193 (223)
...++.| ...|+..|||.|++||-+|..+|+.+.-+....- .....-. .++|++|-++++|++++
T Consensus 183 dkc~~aL-sa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~-lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 183 DKCCRAL-SAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANI-LKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHH-HHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHH-HHHhHHHHHHHHHHHHH
Confidence 8899999 9999999999999999999999998877744310 0011111 35899999999998864
No 89
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.32 E-value=4.2e-12 Score=80.53 Aligned_cols=67 Identities=22% Similarity=0.401 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHH
Q 027486 118 EHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGS 189 (223)
Q Consensus 118 ~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~ 189 (223)
..++..+++.+.|+.| |.+|++++|++|++||+||+.+++.+.++..... .... ...+|+|.+|++|
T Consensus 3 ~~~~~~~~~~~~l~~l-e~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~~~~--~~~~p~l~~w~~r 69 (69)
T PF13410_consen 3 AVERARAQLEAALDAL-EDHLADGPFLFGDRPSLADIALAPFLWRLRFVGP--DFDL--LEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTH--TCCH--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCc--CcCc--cccCHHHHHHHhC
Confidence 4567788999999999 9999999999999999999999999999976522 1122 3599999999986
No 90
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.31 E-value=7.6e-12 Score=79.67 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=50.1
Q ss_pred CCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhh
Q 027486 10 WPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEA 76 (223)
Q Consensus 10 ~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 76 (223)
+.+++|.+++++|++.|+||+.+... . . ...+|. |+||+|++||.+|+||.+|+.||.++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~--~--~--~~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRA--N--A--EFMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecC--C--c--cccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 45778999999999999999988432 1 1 126787 99999999999999999999999763
No 91
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.27 E-value=2.2e-11 Score=79.36 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=62.7
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
+++||+.++||+|.+++.+|...|++|+.+.++-.....++...++. .+||++..||..+.++..|.+||+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 58999999999999999999999999999988755444566667776 799999999999999999999984
No 92
>PRK10638 glutaredoxin 3; Provisional
Probab=99.26 E-value=2.7e-11 Score=79.71 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=63.0
Q ss_pred CCceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCC-CchHHHhhCCCCCccceEeeCCeeccchHHHHHH
Q 027486 1 MEQVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSN-KSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEY 72 (223)
Q Consensus 1 M~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~y 72 (223)
|++++||+.+.||+|++++.+|..+|++|+.+.++... ..+++.+.++. .++|+++.+|..|.....+..+
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~ 72 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYAL 72 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHH
Confidence 77899999999999999999999999999999997553 45678888997 8999999999999998777665
No 93
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.25 E-value=2.4e-11 Score=83.34 Aligned_cols=95 Identities=18% Similarity=0.361 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhh---------cCCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFY---------IGVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWI 159 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~ 159 (223)
+++++++|+.+..+.+.+.+.... ..+++..+...+++.+.++.| |..|++++|++|+++|+||+++++.
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~L~~~~~l~g~~~slaDi~~~~~ 80 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVL-EAHLAGRDFLVGDALTIADIALAAY 80 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHH-HHHHccCccccCCCCCHHHHHHHHH
Confidence 478899999998777666643211 122344567788899999999 9999988999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCCcHHHHHHHHhh
Q 027486 160 AKSFGVVEEVVGVKVLDADSFPRLHAWIGSFR 191 (223)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 191 (223)
+.++... +.+ ..++|++.+|+++++
T Consensus 81 ~~~~~~~----~~~---~~~~p~l~~~~~~~~ 105 (105)
T cd03179 81 THVADEG----GFD---LADYPAIRAWLARIE 105 (105)
T ss_pred HHhcccc----CCC---hHhCccHHHHHHhhC
Confidence 8887432 322 347999999999874
No 94
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.24 E-value=2.3e-11 Score=84.00 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHHHcccCCC----------CccccCCCchhHHHHHHHHHHHHHHHHHhccccc--CCCCCcHHHH
Q 027486 118 EHEKAIKEAKEKLKIIEEQGLGDK----------KFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVL--DADSFPRLHA 185 (223)
Q Consensus 118 ~~~~~~~~~~~~l~~l~e~~L~~~----------~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~--~~~~~p~l~~ 185 (223)
..++...++.+.|+.| |.+|+++ +|++|+++|+||+++++.+.++... +.+.. ....+|+|.+
T Consensus 26 ~i~~~~~~l~~~l~~L-E~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~P~l~~ 100 (111)
T cd03204 26 YLKKILDELEMVLDQV-EQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGKRPNLEA 100 (111)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc----CccccccccccChHHHH
Confidence 4466788899999999 9999754 5999999999999999999888543 32211 0247999999
Q ss_pred HHHHhhchhhh
Q 027486 186 WIGSFRSHPVI 196 (223)
Q Consensus 186 w~~~~~~~p~~ 196 (223)
|++++.+||+|
T Consensus 101 w~~rv~aRpsf 111 (111)
T cd03204 101 YFERVLQRESF 111 (111)
T ss_pred HHHHHHcCCCC
Confidence 99999999975
No 95
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.22 E-value=7.3e-11 Score=80.93 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhcCC-----chhHHHHHHHHHHHHHHHHHcccCC--CCccccCCCchhHHHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFYIGV-----GEEHEKAIKEAKEKLKIIEEQGLGD--KKFFGGNEIGMADLVFGWIAK 161 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~e~~L~~--~~~l~G~~~s~aD~~~~~~l~ 161 (223)
++++++.+++.+++.........+... +...+...+.+.+.++.| |++|++ ++|++|+++|+||+++++.+.
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-e~~l~~~~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKL-EKILKENGGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHH-HHHHHHcCCCeeeCCCccHHHHHHHHHHH
Confidence 467788888887666544444444322 344556678889999999 999976 899999999999999999998
Q ss_pred HHHHHHHHhcccccCCCCCcHHHHHHHHh
Q 027486 162 SFGVVEEVVGVKVLDADSFPRLHAWIGSF 190 (223)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 190 (223)
++... +... ....+|++.+|++++
T Consensus 81 ~~~~~----~~~~-~~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYL----DPKL-LLKKYPKLKALRERV 104 (104)
T ss_pred HHHhh----Cchh-hHHhChhHHHHHHhC
Confidence 88543 2222 134799999999975
No 96
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.19 E-value=1.6e-10 Score=80.73 Aligned_cols=71 Identities=21% Similarity=0.373 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHccc---CCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhh
Q 027486 120 EKAIKEAKEKLKIIEEQGL---GDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVI 196 (223)
Q Consensus 120 ~~~~~~~~~~l~~l~e~~L---~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (223)
+...+.+.+.+..+ +.++ ++++|++|+ +|+||+++++++.+.... +.+ ..|+|.+|++++.++|++
T Consensus 40 ~~~~~~~~~~~~~l-e~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~----~~~-----~~P~l~~~~~rv~~rPsv 108 (114)
T cd03194 40 EAVQADIARIEAIW-AECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTY----GLP-----LSPAAQAYVDALLAHPAM 108 (114)
T ss_pred HHHHHHHHHHHHHH-HHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHc----CCC-----CCHHHHHHHHHHHCCHHH
Confidence 34445555555555 5554 567899999 999999999998888432 322 129999999999999999
Q ss_pred HhhCC
Q 027486 197 KEHLP 201 (223)
Q Consensus 197 ~~~~~ 201 (223)
++++.
T Consensus 109 ~~~~~ 113 (114)
T cd03194 109 QEWIA 113 (114)
T ss_pred HHHHh
Confidence 98764
No 97
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.15 E-value=4.8e-11 Score=81.18 Aligned_cols=95 Identities=23% Similarity=0.326 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHcccCCCC--ccccCCCchhHHHHHHHHHHHH
Q 027486 87 PYDRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQGLGDKK--FFGGNEIGMADLVFGWIAKSFG 164 (223)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~~L~~~~--~l~G~~~s~aD~~~~~~l~~~~ 164 (223)
+..++.+++|+++.. . ...........+...+...+++.+.+..+ +++|++++ |++|++||+||+.+++.|....
T Consensus 3 ~~~~a~i~~W~~f~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~ 79 (99)
T PF14497_consen 3 PYWRALIDRWLDFSV-A-FRRRKARLEKDEASGDFSREELPKALKIL-EKHLAERGGDFLVGDKPTLADIAVFGFLASLR 79 (99)
T ss_dssp -TTHHHHHHHHH-GH-C-CHCCHCHHHHHCCHHHHHHHHHHHHHHHH-HHHHHHTSSSSSSSSS--HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccc-h-hhhHHHHHHHhhhhHHhhHHHHHHHHHHH-HHHHHcCCCeeecCCCCCHHHHHHHHHHHHHh
Confidence 345666777777441 0 00000000112334566788899999999 99998666 9999999999999999886664
Q ss_pred HHHHHhcccccCCCCCcHHHHHHHHhhc
Q 027486 165 VVEEVVGVKVLDADSFPRLHAWIGSFRS 192 (223)
Q Consensus 165 ~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (223)
. . +. ...+|+|.+|++||++
T Consensus 80 ~-----~-~~--~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 80 W-----A-DF--PKDYPNLVRWYERIEE 99 (99)
T ss_dssp C-----C-HH--TTTCHHHHHHHHHHHT
T ss_pred h-----c-cc--ccccHHHHHHHHhhcC
Confidence 2 2 11 1589999999999974
No 98
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.13 E-value=3.2e-10 Score=72.46 Aligned_cols=71 Identities=25% Similarity=0.241 Sum_probs=60.5
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
+++||+.++||+|.+++-+|...|++|+.+.++.......+...+.. .++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 47999999999999999999999999999988755433445555565 689999999999999999999974
No 99
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.12 E-value=2.1e-10 Score=77.56 Aligned_cols=92 Identities=23% Similarity=0.497 Sum_probs=66.8
Q ss_pred HHHHHHHhhhhhhHHHHhhc-------CCchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHH
Q 027486 94 RFWIKFSDENLAPTFVAFYI-------GVGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVV 166 (223)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~ 166 (223)
+.|+.++.+.+.+.+...+. ..++..+...+.+.+.++.| |++|++++|++|+++|+||+.+++.+.++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~ 80 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAAL-EKLLAGRPYLAGDRFSLADIALAPVLARLDLL 80 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHH-HHHHccCCCCCCCCcCHHHHHHHHHHHHHHHh
Confidence 34566666655444433222 12445566788899999999 99999999999999999999999999998654
Q ss_pred HHHhcccccCCCCCcHHHHHHHHh
Q 027486 167 EEVVGVKVLDADSFPRLHAWIGSF 190 (223)
Q Consensus 167 ~~~~~~~~~~~~~~p~l~~w~~~~ 190 (223)
....+ . ...+|++.+|++++
T Consensus 81 ~~~~~--~--~~~~p~l~~~~~~~ 100 (100)
T cd00299 81 GPLLG--L--LDEYPRLAAWYDRL 100 (100)
T ss_pred hhhhh--h--hccCccHHHHHHhC
Confidence 22111 1 34899999999875
No 100
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.06 E-value=5.8e-10 Score=79.05 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhc
Q 027486 119 HEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRS 192 (223)
Q Consensus 119 ~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (223)
.+.....+.+.|+.+ |++|++++|+.|++||+||+++++.+.+..... +.+. ...+|+|.+|++++.+
T Consensus 56 ~~~~~~~~~~~l~~l-~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~---~~~~--~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPL-RATLKGQPFLGGAAPNYADYIVFGGFQWARIVS---PFPL--LEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHH-HHHHcCCCccCCCCCchhHHHHHHHHHHHHHcC---cccc--cccCChHHHHHHHHhc
Confidence 456778899999999 999999999999999999999999988885321 2222 3489999999999976
No 101
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.06 E-value=7.7e-10 Score=73.51 Aligned_cols=68 Identities=26% Similarity=0.261 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccc--cCCCCCcHHHHHHHHhh
Q 027486 121 KAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKV--LDADSFPRLHAWIGSFR 191 (223)
Q Consensus 121 ~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~--~~~~~~p~l~~w~~~~~ 191 (223)
+..+++.+.++.+ |+.|++++|++|+++|+||+++++.+.++... .. .... .....+|+|.+|++++.
T Consensus 19 ~~~~~~~~~l~~l-e~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~-~~-~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKAL-SDLLGDKKFFFGDKPTSLDATVFGHLASILYA-PL-PNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHH-HHHhCCCCccCCCCCCHHHHHHHHHHHHHHhc-CC-CChHHHHHHHhCcHHHHHHHHhC
Confidence 5677889999999 99999999999999999999999998887431 00 1100 01247999999999974
No 102
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.1e-08 Score=80.94 Aligned_cols=172 Identities=19% Similarity=0.262 Sum_probs=118.4
Q ss_pred CChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEe-eCCeeccchHHHHHHHHhhCCCCCCCCC-CHH
Q 027486 11 PSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV-HDEKPIVESTVILEYIEEAWPRHPLLPK-DPY 88 (223)
Q Consensus 11 ~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~l~p~-~~~ 88 (223)
.++-|.++-+++++++-|.+++..+... .+|. |++|+|+ ++|..++.-..|..+|.....+..+-+. ...
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~~-------~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~k 87 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNPW-------RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAK 87 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCCC-------CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHH
Confidence 5678999999999999777777664332 3566 8999999 5679999999999999884222222222 245
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHhhc-------------------------------------------CCchhHHHHHHH
Q 027486 89 DRAAARFWIKFSDENLAPTFVAFYI-------------------------------------------GVGEEHEKAIKE 125 (223)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~ 125 (223)
+.+....+..++++.+.+++...+. ...+...+....
T Consensus 88 q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~ 167 (313)
T KOG3028|consen 88 QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKD 167 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 6777777888887776666532111 011112334556
Q ss_pred HHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhccccc-CCCCCcHHHHHHHHhhc
Q 027486 126 AKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVL-DADSFPRLHAWIGSFRS 192 (223)
Q Consensus 126 ~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~-~~~~~p~l~~w~~~~~~ 192 (223)
..+.++.| ...|+..+|++|++||-.|+.+++.+..+... +...-.+. ....+++|.++++++++
T Consensus 168 Aska~~~L-S~~Lgs~kffFgd~psslDa~lfs~la~~~~~-~Lp~~~Lq~~l~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 168 ASKALNLL-STLLGSKKFFFGDKPSSLDALLFSYLAILLQV-ALPNDSLQVHLLAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHH-HHHhcCceEeeCCCCchHHHHHHHHHHHHHhc-cCCchhHHHHHHhcchHHHHHHHHHH
Confidence 67789999 99999999999999999999999988773211 10000000 02348999999999987
No 103
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.05 E-value=1.3e-09 Score=69.70 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=50.4
Q ss_pred CCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhh
Q 027486 10 WPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEA 76 (223)
Q Consensus 10 ~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~ 76 (223)
..||+|.++.++|+.+|+||+.+..+.. ..+|. |++|+|+++|..+.||..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~-------~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNP-------WRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCC-------CCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 3579999999999999999998855321 24676 99999999999999999999999875
No 104
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.92 E-value=4.6e-09 Score=67.22 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=57.3
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeeccchHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILE 71 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~ 71 (223)
+++||+.+.||+|++++.+|...||+|+.+.++.. ...+++.+.++. .++|++..||..|..-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 47999999999999999999999999999988653 335677888887 899999999988887655443
No 105
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.90 E-value=1.1e-08 Score=69.26 Aligned_cols=68 Identities=16% Similarity=0.261 Sum_probs=53.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHh
Q 027486 115 VGEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSF 190 (223)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~ 190 (223)
++...+.....+.+.|..+ |++|++++| +++|+||+++++.+.+..... . +... ..++|+|.+|++++
T Consensus 31 ~~~~~~~~~~~~~~~l~~l-e~~L~~~~~---d~~TlADi~l~~~l~~~~~~~-~-~~~~--~~~~p~l~~w~~rm 98 (98)
T cd03205 31 SQPWLERQRGKIERALDAL-EAELAKLPL---DPLDLADIAVACALGYLDFRH-P-DLDW--RAAHPALAAWYARF 98 (98)
T ss_pred ChHHHHHHHHHHHHHHHHH-HHhhhhCCC---CCCCHHHHHHHHHHHHHHhHc-c-Ccch--hhhChHHHHHHHhC
Confidence 3445566788899999999 999998888 789999999999998885321 1 2222 35899999999985
No 106
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.86 E-value=9e-09 Score=67.16 Aligned_cols=61 Identities=10% Similarity=0.198 Sum_probs=48.5
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeecc
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIV 64 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~ 64 (223)
.++||+.++||+|.+++-+|..+||+|+.+.++-+....+....++. .+||+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEe
Confidence 48999999999999999999999999999998754322222344676 79999998876554
No 107
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.83 E-value=2e-08 Score=63.55 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=58.8
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCC-CchHHHhhCCCCCccceEeeCCeeccchHHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSN-KSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEY 72 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~y 72 (223)
+++||+.++||+|++++.+|...|++|+.+.++... ..+++...++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999988886542 34666777887 7999999999999999877654
No 108
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.81 E-value=2.5e-08 Score=71.87 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHccc-CCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhc
Q 027486 122 AIKEAKEKLKIIEEQGL-GDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRS 192 (223)
Q Consensus 122 ~~~~~~~~l~~l~e~~L-~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (223)
.+..+...++.+ -+.+ ++++|++|++||+||+++++.+..+.... +. .+..++|+|.+|+++|++
T Consensus 80 ~r~~L~~a~~~w-~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~---~~--~Dl~~~p~I~~W~eRm~~ 145 (149)
T cd03197 80 VREWLYDALNTW-VAALGKDRQFHGGSKPNLADLAVYGVLRSVEGHP---AF--KDMVEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHH-HHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhc---cc--cchhhCcCHHHHHHHHHH
Confidence 345555555555 3334 46789999999999999999998885431 22 134589999999999986
No 109
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.80 E-value=1.5e-08 Score=64.32 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=52.6
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeeccc
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPIVE 65 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~e 65 (223)
++++|+.++||+|.+++.+|...|++|+.+.++.. ...+++.+.+|. +++|+++.+|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEec
Confidence 47999999999999999999999999999988754 334567788897 899999988876654
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.79 E-value=2.4e-08 Score=63.59 Aligned_cols=69 Identities=23% Similarity=0.237 Sum_probs=55.6
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeec--cchHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPI--VESTVILEYI 73 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l--~eS~~I~~yL 73 (223)
++||+.++||+|++++.+|...|++|..+.++-. ...+++.+.++. ..+|+++.+|..+ .++..|.++|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 7999999999999999999999999998877643 223456677887 7999999888777 5666666654
No 111
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.78 E-value=3.2e-08 Score=63.55 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=56.1
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYI 73 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL 73 (223)
+++||+.+.||+|.+++-+|...||+|+.+.++.. ...+++........++|++..+|..+.+...+.++-
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHH
Confidence 47899999999999999999999999999988754 222334444432138999999999999988887764
No 112
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.77 E-value=1.5e-07 Score=64.03 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHHhhhhhhHHHH-----hhcC--CchhHHHHHHHHHHHHHHHHHcccC-CCCccccCCCchhHHHHH
Q 027486 86 DPYDRAAARFWIKFSDENLAPTFVA-----FYIG--VGEEHEKAIKEAKEKLKIIEEQGLG-DKKFFGGNEIGMADLVFG 157 (223)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~l~e~~L~-~~~~l~G~~~s~aD~~~~ 157 (223)
|..+|++.+++..++.+.+++.-.. .|.. ...-.+.....+.+++... +.+|. +++||+|+ .|+||..++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a-~~ll~~g~~~LFGe-wsIAD~dlA 78 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVA-ERLLADGGPNLFGE-WSIADADLA 78 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHH-HHHTTT--SSTTSS---HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHH-HHHhccCCCCcccc-chHHHHHHH
Confidence 4578999999999999987666431 1111 1223355667777888888 88887 57899996 999999999
Q ss_pred HHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhCC
Q 027486 158 WIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHLP 201 (223)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~ 201 (223)
+++.++... |.+ ++ +++..|.++.-++|++++.+.
T Consensus 79 ~ml~Rl~~~----gd~-vP----~~l~~Ya~~qwqrpsVQ~Wla 113 (117)
T PF14834_consen 79 LMLNRLVTY----GDP-VP----ERLADYAERQWQRPSVQRWLA 113 (117)
T ss_dssp HHHHHHHTT----T---------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHc----CCC-CC----HHHHHHHHHHHCCHHHHHHHH
Confidence 999999654 433 23 689999999999999998764
No 113
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.71 E-value=1.9e-08 Score=71.43 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=55.8
Q ss_pred chhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHH-HHHhcccccCCCCCcHHHHHHHHhh
Q 027486 116 GEEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVV-EEVVGVKVLDADSFPRLHAWIGSFR 191 (223)
Q Consensus 116 ~~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~ 191 (223)
....++......+.|+.| +..|++++|++|++||.+|+++++.+..+... .+....... ..++|+|.+|++||.
T Consensus 52 r~~~ee~~~~~~~~l~aL-s~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~-~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 52 DKTLDQVIEEVDQCCQAL-SQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEK-VKKYSNLLAFCRRIE 126 (126)
T ss_pred CCCHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHH-HHhCcHHHHHHHhcC
Confidence 335567778888999999 99999999999999999999999988776421 000011111 358999999999974
No 114
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.67 E-value=6.1e-08 Score=69.80 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHH-HHHhcccccCCCCCcHHHHHHHHhhc
Q 027486 117 EEHEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVV-EEVVGVKVLDADSFPRLHAWIGSFRS 192 (223)
Q Consensus 117 ~~~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~l~~w~~~~~~ 192 (223)
...++...++.+.++.| ++.|++++|++|++||.+|+++++.+..+... .+....... ..++|+|.+|++|+.+
T Consensus 60 ~~~~~~~~~a~~~l~~l-~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~-~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 60 EVEAEIYRDAKECLNLL-SQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNH-LKQCPNLCRFCDRILS 134 (137)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHH-HHHCcHHHHHHHHHHH
Confidence 34566778888999999 99999999999999999999999987666321 000010111 3589999999999975
No 115
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.67 E-value=1e-07 Score=61.30 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=53.8
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhC-CCCCccceEe-eCCeeccchH--HHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYN-PVHQKVPVLV-HDEKPIVEST--VILEYI 73 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~-p~~~~vP~L~-~~g~~l~eS~--~I~~yL 73 (223)
+++||+.++||+|++++-+|...|++|+.+.++-. ...+.+...| +. ..+|+++ ++|..+.++. .|..+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 47999999999999999999999999998877644 2234555666 76 7999997 6777776653 455544
No 116
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.66 E-value=1.3e-07 Score=61.44 Aligned_cols=70 Identities=14% Similarity=0.168 Sum_probs=57.3
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
+++|+.+.||+|.+++-+|+..|++|+.+.++.. ...+++...+.. ..+|++..+|..+.+...+.++-.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHH
Confidence 5899999999999999999999999999998754 233455555665 689999999999988877766644
No 117
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.9e-07 Score=60.70 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=54.7
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCC--CchHH-HhhCCCCCccceEeeCCeeccchHHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSN--KSDML-LKYNPVHQKVPVLVHDEKPIVESTVILEY 72 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~--~~~~~-~~~~p~~~~vP~L~~~g~~l~eS~~I~~y 72 (223)
++++|+.+.||||.+++-+|..+|++|+.+.++... ...++ ...++. .+||+++.||..+..+..+-++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 489999999999999999999999999999887654 33333 444576 7999999999887765544444
No 118
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.60 E-value=1.3e-07 Score=60.34 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=44.5
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCe
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEK 61 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~ 61 (223)
++||+.+.||+|++++-+|...||+|+.+.++-...........+. ..||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999988754322222333454 68999997654
No 119
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.53 E-value=6.2e-07 Score=59.07 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=60.0
Q ss_pred ceEEeccCCChhHHHHHHHHHH-----hCCCceeeecCCCC-CchHHHhhCCC-CCccceEeeCCeeccchHHHHHHHHh
Q 027486 3 QVKLIGAWPSPYVYRVIWALQL-----KGIKYEYVEENLSN-KSDMLLKYNPV-HQKVPVLVHDEKPIVESTVILEYIEE 75 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~-~~~~~~~~~p~-~~~vP~L~~~g~~l~eS~~I~~yL~~ 75 (223)
.+++|+.++||+|.+++-+|.. .|++|+.+.++-.. ..+++...... ...||++..||..+.+...|.+++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 4899999999999999999999 89999999886431 12334333221 03799999999999999999999887
Q ss_pred hCC
Q 027486 76 AWP 78 (223)
Q Consensus 76 ~~~ 78 (223)
.++
T Consensus 82 ~~~ 84 (85)
T PRK11200 82 NLG 84 (85)
T ss_pred hcc
Confidence 653
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.51 E-value=1.3e-07 Score=57.93 Aligned_cols=59 Identities=29% Similarity=0.313 Sum_probs=49.0
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeec
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPI 63 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l 63 (223)
+++|+.++||+|.+++-+|...|++|+.+.++.. ...+++.+.+.. .++|++..||..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5799999999999999999999999999999765 344555566554 7899999888754
No 121
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.50 E-value=1.2e-06 Score=59.38 Aligned_cols=69 Identities=13% Similarity=0.053 Sum_probs=56.2
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCc----hHHHhhCCCCCccceEeeCCeeccchHHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKS----DMLLKYNPVHQKVPVLVHDEKPIVESTVILEY 72 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~y 72 (223)
++++|+.++||||.+++-+|...|++|+.+.++-.... ..+...+.. .+||.+..+|..|.....+...
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 68999999999999999999999999999999754322 234455565 6899999999999888776654
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.47 E-value=1.3e-06 Score=56.87 Aligned_cols=72 Identities=21% Similarity=0.193 Sum_probs=59.4
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCc----hHHHhhCCCCCccceEeeCCeeccchHHHHHHHHh
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKS----DMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEE 75 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~ 75 (223)
++++|+.++||+|.+++-+|...+++|+.+.++..+.. ..+.+.+.. ..+|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999988765432 234455554 6899999999999999988887654
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.45 E-value=1.6e-06 Score=59.72 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=56.4
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCC---CceeeecCCCCC----chHHHhhCCCCCccceEeeCCeeccchHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGI---KYEYVEENLSNK----SDMLLKYNPVHQKVPVLVHDEKPIVESTVILE 71 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~ 71 (223)
++++|+.++||||.+++-+|...|+ +|+.+.++-... .+++.+.+.. .+||.+..+|..|.....+..
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 6899999999999999999999999 798998874222 3556677765 689999999999988876655
No 124
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.38 E-value=2.6e-06 Score=56.19 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=56.8
Q ss_pred eEEeccCCChhHHHHHHHHHHhC-----CCceeeecCCCC-CchHHHhhCCC-CCccceEeeCCeeccchHHHHHHHHhh
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKG-----IKYEYVEENLSN-KSDMLLKYNPV-HQKVPVLVHDEKPIVESTVILEYIEEA 76 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~-~~~vP~L~~~g~~l~eS~~I~~yL~~~ 76 (223)
+++|+.++||+|.+++-+|...+ ++|+.+.++... ..+++...... ...||++..||..+.++..|.+++.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 68999999999999999999985 567777765322 12334333221 147999999999999999999998876
Q ss_pred CC
Q 027486 77 WP 78 (223)
Q Consensus 77 ~~ 78 (223)
+.
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 53
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.22 E-value=6.9e-06 Score=55.44 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=53.3
Q ss_pred ceEEecc-----CCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeeccchHHHHHH
Q 027486 3 QVKLIGA-----WPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEY 72 (223)
Q Consensus 3 ~~~Ly~~-----~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~y 72 (223)
++.+|.. ++||||.+++-+|...|++|+.+.++-. ....++...+.. .+||.+..+|..|.....+...
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l 87 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEM 87 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHH
Confidence 5678854 8999999999999999999999888532 112334455665 6899999999999887776654
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.22 E-value=1.3e-05 Score=52.36 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=56.4
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCC--ceeeecCCCCCch----HHHhhCCCCCccceEeeCCeeccchHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIK--YEYVEENLSNKSD----MLLKYNPVHQKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
+++|+.++||+|.+++-+|...+++ |+.+.++...... .+.+.+.. ..+|++..+|..+.++..+.++..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYK 76 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHH
Confidence 4789999999999999999999999 8888887653332 24444554 589999999999999988877654
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.19 E-value=9.6e-06 Score=53.97 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=54.4
Q ss_pred ceEEecc-----CCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeeccchHHHHHH
Q 027486 3 QVKLIGA-----WPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEY 72 (223)
Q Consensus 3 ~~~Ly~~-----~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~y 72 (223)
++.+|.. ++||||.+++-+|...|++|+.+.++.. ....++.+.+.. .++|++..+|..|.+...+...
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEM 83 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHH
Confidence 4677754 6999999999999999999999988643 222444555665 6899999999999988877764
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.10 E-value=2.3e-05 Score=49.68 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=48.0
Q ss_pred CChhHHHHHHHHHHhCCC---ceeeecCCCCCchHHHhhCCCCCccceEee-CCeeccchHHHHHHH
Q 027486 11 PSPYVYRVIWALQLKGIK---YEYVEENLSNKSDMLLKYNPVHQKVPVLVH-DEKPIVESTVILEYI 73 (223)
Q Consensus 11 ~sp~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~-~g~~l~eS~~I~~yL 73 (223)
.+|-|.++.++|...+.| |+.+..+-.. .+|. |++|+|.+ ++..+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~-------~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPW-------LSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCC-------cCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 678899999999999999 8888765222 5787 89999998 999999999999998
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.95 E-value=3.7e-05 Score=65.38 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=54.6
Q ss_pred CCceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHH-hh--------CCCCCccceEeeCCeeccchHHHHH
Q 027486 1 MEQVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLL-KY--------NPVHQKVPVLVHDEKPIVESTVILE 71 (223)
Q Consensus 1 M~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~-~~--------~p~~~~vP~L~~~g~~l~eS~~I~~ 71 (223)
|.++++|+.++||+|.++.-+|...||+|+.+.|+-+....++. .. +.. .+||++..||..|.+-..+..
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHH
Confidence 77899999999999999999999999999999997332222222 21 343 579999999988888766655
No 130
>PRK10824 glutaredoxin-4; Provisional
Probab=97.70 E-value=0.00022 Score=49.49 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=54.0
Q ss_pred ceEEecc-----CCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeeccchHHHHHH
Q 027486 3 QVKLIGA-----WPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEY 72 (223)
Q Consensus 3 ~~~Ly~~-----~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~y 72 (223)
++.+|.- |.||||.++.-+|...|++|+.+.++-. .....+...+.. .+||-+..+|..|..+..+...
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 4567754 5999999999999999999999887543 223445566665 7999999999999998776664
No 131
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.65 E-value=0.00026 Score=51.35 Aligned_cols=69 Identities=13% Similarity=0.072 Sum_probs=54.0
Q ss_pred eEEeccC------CChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCC---CCccceEeeCCeeccchHHHHHH
Q 027486 4 VKLIGAW------PSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPV---HQKVPVLVHDEKPIVESTVILEY 72 (223)
Q Consensus 4 ~~Ly~~~------~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~---~~~vP~L~~~g~~l~eS~~I~~y 72 (223)
++||..+ ++|+|.+++-+|...||+|+++.|++. ...+++.+.... ...||.+..+|..|.....+.+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 6899988 899999999999999999999998765 223444443221 15899999999999988776664
No 132
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00022 Score=44.55 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=48.0
Q ss_pred CCceEEeccCCChhHHHHHHHHHHhCCCceeeecCCC-----------CCchHHHhhCCC-CCccceEe-eCCeecc
Q 027486 1 MEQVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLS-----------NKSDMLLKYNPV-HQKVPVLV-HDEKPIV 64 (223)
Q Consensus 1 M~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-----------~~~~~~~~~~p~-~~~vP~L~-~~g~~l~ 64 (223)
|++++||+...||-|....-.|+-.|+.|+.+.|..+ +..++|-..... +--+|+|. +||.++.
T Consensus 1 mskp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 1 MSKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 7878999999999999999999999999999998533 444555433221 12389997 5666554
No 133
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.00069 Score=46.08 Aligned_cols=69 Identities=20% Similarity=0.192 Sum_probs=56.3
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchH----HHhhCCCCCccceEeeCCeeccchHHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDM----LLKYNPVHQKVPVLVHDEKPIVESTVILEY 72 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~----~~~~~p~~~~vP~L~~~g~~l~eS~~I~~y 72 (223)
++.+|+-.+||||.+++-+|...|+++.++++|-.....+ +.+.... .+||.+..+|..+..+..+..+
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHH
Confidence 5788999999999999999999999999999986633333 3344554 5899999999999888877665
No 134
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.43 E-value=0.00069 Score=48.12 Aligned_cols=68 Identities=21% Similarity=0.387 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhh
Q 027486 119 HEKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVI 196 (223)
Q Consensus 119 ~~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (223)
.++..+++...|..| +.+|.......| ++|+-|+.+|+.|+.+.... |..+ + |+|.+|++++++...+
T Consensus 57 t~~~i~~l~~~L~~L-e~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivk---gi~~-P----~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 57 TPELIAELNADLEEL-EPLLASPNAVNG-ELSIDDIILFPILRSLTIVK---GIQW-P----PKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHH-HHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCT---TS--------HHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHH-HHHhccccccCC-CCCHHHHHHHHHHhhhhhcc---CCcC-C----HHHHHHHHHHHHHcCC
Confidence 356678888899999 888885544444 89999999999999995432 3333 3 7899999999987655
No 135
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00038 Score=59.61 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=82.0
Q ss_pred eCCeeccchHHHHHHHHhhCC-CCCCCCCCHHHHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHHHHHHHHHHHHHHHc
Q 027486 58 HDEKPIVESTVILEYIEEAWP-RHPLLPKDPYDRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKAIKEAKEKLKIIEEQ 136 (223)
Q Consensus 58 ~~g~~l~eS~~I~~yL~~~~~-~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~e~ 136 (223)
-++..+..+..+..|...... .+.+++.+ .++.+++.|++++... ...++...+..| +.
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~------------------~~~~~s~~~~~l-d~ 102 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF------------------SFDEISSSLSEL-DK 102 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc------------------chHHHHHHHHHH-Hh
Confidence 345666666666667654432 33488877 7899999999988541 233466788888 88
Q ss_pred ccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhHhhC
Q 027486 137 GLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIKEHL 200 (223)
Q Consensus 137 ~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 200 (223)
+|.-..||+|.++|+||+++|+.++.-....+... ....+-++.+|++-.+..++.+.+.
T Consensus 103 ~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk----~~k~~~~v~Rw~~~~~~~~a~~~v~ 162 (712)
T KOG1147|consen 103 FLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLK----AKKDYQNVERWYDLPEFQEAHNKVL 162 (712)
T ss_pred hhhHHHHhhccchhHHHHHHHHHHhcccchHHHHH----hhCCchhhhhhcCcHhHHHHHHHHH
Confidence 88888899999999999999998877533322211 1236678999999555555555444
No 136
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.19 E-value=0.0013 Score=40.80 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=39.6
Q ss_pred ceEEeccCCChhHHHHHHHHHHh-----CCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeecc
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLK-----GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIV 64 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~ 64 (223)
++++|+.++||+|.++.-++... ++++..+.+ ... ++....... ..+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~--~~~-~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDA--AEF-PDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEc--ccC-HhHHHHcCC-cccCEEEECCEEEE
Confidence 37899999999999998888865 455555544 332 333333333 46999998886654
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=97.17 E-value=0.0019 Score=49.55 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=52.2
Q ss_pred ceEEecc-----CCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeeccchHHHHH
Q 027486 3 QVKLIGA-----WPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILE 71 (223)
Q Consensus 3 ~~~Ly~~-----~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~ 71 (223)
++.||.- |.||||+++.-+|...||+|+...++-+ .....+.+.+.. .++|.+..+|..|.....+.+
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHH
Confidence 4667743 6899999999999999999999888633 222444555655 689999999999988766655
No 138
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.01 E-value=0.0016 Score=45.05 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=30.7
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENL 36 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~ 36 (223)
++||+.+.||+|++++-+|...|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999998753
No 139
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.01 E-value=0.001 Score=45.45 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=30.3
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 35 (223)
+++|+.+.||+|++++-+|..+|++|+++.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999999885
No 140
>PRK10026 arsenate reductase; Provisional
Probab=96.98 E-value=0.0012 Score=47.56 Aligned_cols=34 Identities=6% Similarity=0.017 Sum_probs=32.5
Q ss_pred CCceEEeccCCChhHHHHHHHHHHhCCCceeeec
Q 027486 1 MEQVKLIGAWPSPYVYRVIWALQLKGIKYEYVEE 34 (223)
Q Consensus 1 M~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v 34 (223)
|+.+++|+.+.|.-|++++-+|..+|++|+++.+
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 7789999999999999999999999999999976
No 141
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.97 E-value=0.0012 Score=47.03 Aligned_cols=32 Identities=13% Similarity=-0.036 Sum_probs=30.5
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 35 (223)
++||+.+.||+|++++-+|...||+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 79999999999999999999999999999874
No 142
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.87 E-value=0.0027 Score=44.20 Aligned_cols=32 Identities=16% Similarity=0.014 Sum_probs=30.4
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 35 (223)
+++|+.+.|++|++++-+|...|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 79999999999999999999999999999874
No 143
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=96.82 E-value=0.0047 Score=43.52 Aligned_cols=67 Identities=12% Similarity=0.241 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhh
Q 027486 120 EKAIKEAKEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVI 196 (223)
Q Consensus 120 ~~~~~~~~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 196 (223)
.+..+++...|..+ +..+..... .++.+|+-|+.+|++|+.+.... |..+ + |+|..|+++|++...+
T Consensus 59 ~~~i~~l~~~L~~l-~~ll~~~~~-~n~~ls~DDi~lFp~LR~Lt~vk---gi~~-P----~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEEL-DPLILSSEA-VNGQLSTDDIILFPILRNLTLVK---GLVF-P----PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHH-HHHHcCccc-cCCcCCHHHHHHHHHHhhhhhhc---CCCC-C----HHHHHHHHHHHHHhCC
Confidence 45677788888899 888854444 35579999999999999995532 4333 3 7899999999987554
No 144
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.71 E-value=0.0047 Score=44.07 Aligned_cols=32 Identities=9% Similarity=0.031 Sum_probs=30.6
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 35 (223)
+++|+.+.|+.|++++-+|...||+|+++.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 79999999999999999999999999999875
No 145
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.64 E-value=0.003 Score=44.09 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=30.0
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 35 (223)
++||+.+.||+|++++-+|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999999874
No 146
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.62 E-value=0.0051 Score=43.81 Aligned_cols=32 Identities=16% Similarity=-0.018 Sum_probs=30.5
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 35 (223)
+++|+.+.|+.|++++-+|...|++|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 79999999999999999999999999999874
No 147
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.52 E-value=0.0042 Score=43.06 Aligned_cols=33 Identities=12% Similarity=-0.075 Sum_probs=30.7
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecC
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 35 (223)
+++||+.+.|+.|++++-+|...|++|+++.+-
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 479999999999999999999999999999773
No 148
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.37 E-value=0.0054 Score=41.93 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=30.1
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 35 (223)
+++|+.+.|+.|++++-+|...|++|+++.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999999874
No 149
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.0073 Score=42.09 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=29.8
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeec
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEE 34 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v 34 (223)
++||+.+.|.-|++++-+|+..||+|+++.+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi~~~~~~y 33 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGIEYTFIDY 33 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 8999999999999999999999999999976
No 150
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.26 E-value=0.018 Score=37.23 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=40.3
Q ss_pred ceEEeccCCChhHHHHHHHHHHh--CCCceeeecCCCCCchHHHhhCCCCCccceEeeCC
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLK--GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDE 60 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~--gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g 60 (223)
+++||+-++|+.|..+.-.|+.. ..+++...+|..+.++++.+.+ -.||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~Y~---~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEKYG---YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHHSC---TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHhc---CCCCEEEEcC
Confidence 47999999999999999999965 4566677777665455444444 3699999766
No 151
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.92 E-value=0.04 Score=35.13 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=40.1
Q ss_pred eEEeccCCChhHHHH----HHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeec
Q 027486 4 VKLIGAWPSPYVYRV----IWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPI 63 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~v----r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l 63 (223)
+.+|+ ++||.|..+ .-+++..|+.++++.++- .++..+.+- ..+|++..||..+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v--~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV--TATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC--CcCCEEEECCEEE
Confidence 67776 999999988 668888899999988871 233334443 4699999887555
No 152
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.90 E-value=0.014 Score=41.30 Aligned_cols=32 Identities=16% Similarity=-0.016 Sum_probs=30.4
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeec
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEE 34 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v 34 (223)
.++||+.+.|.-|++++-+|...||+|+++.+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~ 33 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDI 33 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEec
Confidence 58999999999999999999999999999976
No 153
>PRK10853 putative reductase; Provisional
Probab=95.89 E-value=0.014 Score=40.76 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=29.8
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeec
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEE 34 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v 34 (223)
+++|+.+.|.-|++++-+|...|++|+++.+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~ 32 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDY 32 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeeh
Confidence 7999999999999999999999999999976
No 154
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.82 E-value=0.037 Score=37.77 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=47.0
Q ss_pred CChhHHHHHHHHHHh---CCCceeeecCCCCC-chHHHhhCCCCCccceEe-eCCe-------------eccchHHHHHH
Q 027486 11 PSPYVYRVIWALQLK---GIKYEYVEENLSNK-SDMLLKYNPVHQKVPVLV-HDEK-------------PIVESTVILEY 72 (223)
Q Consensus 11 ~sp~~~~vr~~l~~~---gi~~~~~~v~~~~~-~~~~~~~~p~~~~vP~L~-~~g~-------------~l~eS~~I~~y 72 (223)
.||.|..+.=+|+.. .-..+++.|+.... .+-...+...+..+|+|+ .+|. .|.|+..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 577777777777655 33577777776633 333333444446799998 3343 79999999999
Q ss_pred HHhhCC
Q 027486 73 IEEAWP 78 (223)
Q Consensus 73 L~~~~~ 78 (223)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999997
No 155
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.43 E-value=0.1 Score=34.70 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=48.0
Q ss_pred eEEeccCCCh------hHHHHHHHHHHhCCCceeeecCCCC-CchHHHhhC----CCCCccceEeeCCeeccchHHHHH
Q 027486 4 VKLIGAWPSP------YVYRVIWALQLKGIKYEYVEENLSN-KSDMLLKYN----PVHQKVPVLVHDEKPIVESTVILE 71 (223)
Q Consensus 4 ~~Ly~~~~sp------~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~~~vP~L~~~g~~l~eS~~I~~ 71 (223)
++||+...+. .|++++.+|.-+||+|+.+.|+.+. ...+..+.. +. ..+|-+..++..+.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 5778665543 3678899999999999999998652 223333332 33 579999999999988866554
No 156
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.42 E-value=0.025 Score=39.14 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=29.4
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeec
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEE 34 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v 34 (223)
++||+.+.|.-|++++-+|...|++|+++.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 5899999999999999999999999999976
No 157
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.32 E-value=0.027 Score=39.06 Aligned_cols=32 Identities=22% Similarity=0.074 Sum_probs=29.7
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 35 (223)
++||+.+.|.-|++++-+|...|++|+++.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999999763
No 158
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.29 E-value=0.079 Score=33.85 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=38.7
Q ss_pred eEEeccCCChhHHHHHHHHHH----hCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCe
Q 027486 4 VKLIGAWPSPYVYRVIWALQL----KGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEK 61 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~ 61 (223)
++||+.++||+|..+.-.+.. .+..+....||.....+...+ ... ..+|++..+|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~-~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAME-YGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHH-cCC-ccCCEEEECCE
Confidence 689999999999988777653 354566667776544443333 333 46999997664
No 159
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=0.13 Score=34.36 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=46.8
Q ss_pred ccCCChhHHHHHHHHHHhC-CCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHH
Q 027486 8 GAWPSPYVYRVIWALQLKG-IKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYI 73 (223)
Q Consensus 8 ~~~~sp~~~~vr~~l~~~g-i~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL 73 (223)
.+|.|+|+.++--+|..+| ++|..+.|--+ +-...+.+.+-. .++|=|-.+|..+..|..|.+..
T Consensus 26 ~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 26 EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHHH
Confidence 4789999999999999999 67766665221 222333345554 68898999999999987666554
No 160
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.79 E-value=0.074 Score=31.21 Aligned_cols=54 Identities=30% Similarity=0.256 Sum_probs=35.9
Q ss_pred eEEeccCCChhHHHHHHHHH-----HhCCCceeeecCCCCCchHHHhhCCCCCccceEee
Q 027486 4 VKLIGAWPSPYVYRVIWALQ-----LKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVH 58 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 58 (223)
+.+|+..+|++|+++...+. ..++.+..+.++............+. ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 46788999999999999999 34555555555433322222234565 78999983
No 161
>PHA02125 thioredoxin-like protein
Probab=94.71 E-value=0.1 Score=33.04 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=36.6
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEee
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVH 58 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 58 (223)
+.+|+.++|+.|+.+.-.|+ ++.++...++.+. ..++...... ..+|++..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHI-RSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCC-ceeCeEEC
Confidence 68999999999998887775 4567777776544 3444444444 57999983
No 162
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.24 E-value=0.15 Score=33.59 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=38.2
Q ss_pred ceEEeccCCChhHHHHHHHHHHh-----CCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeecc
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLK-----GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIV 64 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~ 64 (223)
++++|..++||+|..+.-++... ++.+..+.+ .+..+...+.+= -.+|+++.||..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~--~~~~e~a~~~~V--~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDG--ALFQDEVEERGI--MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEh--HhCHHHHHHcCC--ccCCEEEECCEEEE
Confidence 47899999999999887766555 444444443 343344444443 36999997776544
No 163
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=92.39 E-value=0.35 Score=36.02 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcccCCC---CccccCC-CchhHHHHHHHHHHH
Q 027486 125 EAKEKLKIIEEQGLGDK---KFFGGNE-IGMADLVFGWIAKSF 163 (223)
Q Consensus 125 ~~~~~l~~l~e~~L~~~---~~l~G~~-~s~aD~~~~~~l~~~ 163 (223)
...+++..| ++.|++. +|++|+. ||-+||.+++.|.-.
T Consensus 112 ~a~~~l~~L-~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLL-EELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHH-HHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 356788899 8889877 8999987 999999999977766
No 164
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=92.03 E-value=0.64 Score=31.31 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=39.0
Q ss_pred eEEeccCCChh------HHHHHHHHHHhCCCceeeecCCC-CCchHHHhhC---------CCCCccceEeeCCeeccchH
Q 027486 4 VKLIGAWPSPY------VYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYN---------PVHQKVPVLVHDEKPIVEST 67 (223)
Q Consensus 4 ~~Ly~~~~sp~------~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~---------p~~~~vP~L~~~g~~l~eS~ 67 (223)
+++|....+.. ++++..+|..++|+|+.+.|..+ ....++++.. +. ...|-+..|+..+.+-.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEEEEHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEEeeHH
Confidence 78887665543 55999999999999999988765 2223344333 21 23467778887776655
Q ss_pred HHH
Q 027486 68 VIL 70 (223)
Q Consensus 68 ~I~ 70 (223)
.+-
T Consensus 82 ~f~ 84 (99)
T PF04908_consen 82 DFE 84 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 165
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=91.59 E-value=0.69 Score=29.30 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=36.4
Q ss_pred eEEeccCCChhHHHHHH----HHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccch
Q 027486 4 VKLIGAWPSPYVYRVIW----ALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVES 66 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS 66 (223)
+++ ..++||+|..+.- ++...|+.++.+.+ ...+...+. .. -.+|+++.||...+..
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~~~y-gv-~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEIEKY-GV-MSVPALVINGKVVFVG 63 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHHHHT-T--SSSSEEEETTEEEEES
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHHHHc-CC-CCCCEEEECCEEEEEe
Confidence 677 5667999995555 55556777766665 223444333 33 5799999888765443
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=89.61 E-value=0.44 Score=32.65 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=23.2
Q ss_pred eccCCChhHHHHHHHHHHhCCCceeeecC
Q 027486 7 IGAWPSPYVYRVIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 7 y~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 35 (223)
|+.+.|.-|++++-+|...|++|+++.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 88999999999999999999999999773
No 167
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.06 E-value=2.9 Score=32.39 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=49.3
Q ss_pred ccCCChhHHHHHHHHHHhCCCceeeecCCC-CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHH
Q 027486 8 GAWPSPYVYRVIWALQLKGIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYI 73 (223)
Q Consensus 8 ~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL 73 (223)
..|.|++++++.=+|...|++|+...|-.+ .-....+..+-. .+.|=|-.+|..+.++..|.+.+
T Consensus 150 ~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 150 EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHh
Confidence 477899999999999999999999988533 222333455665 68898999999999876655544
No 168
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=83.34 E-value=10 Score=24.73 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=42.5
Q ss_pred eEEeccCCChhHHHHHHHHHH----hCCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCeec------cchHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQL----KGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKPI------VESTVILE 71 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l------~eS~~I~~ 71 (223)
+..++.++|+.|+...=.+.. .+-++....+|.....+-..+.+ . ..+|++. .+|..+ .+...|.+
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 98 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYG-V-KSVPTIIFFKNGKEVKRYNGPRNAESLIE 98 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTT-C-SSSSEEEEEETTEEEEEEESSSSHHHHHH
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccC-C-CCCCEEEEEECCcEEEEEECCCCHHHHHH
Confidence 456788999999977744322 22267777777654433333444 3 5799997 566443 24456777
Q ss_pred HHHh
Q 027486 72 YIEE 75 (223)
Q Consensus 72 yL~~ 75 (223)
+|.+
T Consensus 99 ~i~~ 102 (103)
T PF00085_consen 99 FIEK 102 (103)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
No 169
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=82.69 E-value=6.2 Score=27.53 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=21.0
Q ss_pred eEEeccCCChhHHHHHHH----HHHhCCCceeeecC
Q 027486 4 VKLIGAWPSPYVYRVIWA----LQLKGIKYEYVEEN 35 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~----l~~~gi~~~~~~v~ 35 (223)
+..++.++||+|+.+.=. ....++++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 345689999999975443 44445666666665
No 170
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=79.20 E-value=7.7 Score=25.78 Aligned_cols=52 Identities=15% Similarity=-0.048 Sum_probs=30.7
Q ss_pred eEEeccCCChhHHHHHHHH--------HHhCCCceeeecCCCCC---chHHHhhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVYRVIWAL--------QLKGIKYEYVEENLSNK---SDMLLKYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l--------~~~gi~~~~~~v~~~~~---~~~~~~~~p~~~~vP~L~ 57 (223)
+..|+.++|++|+...-.+ .+.+ .+....++.... ...+...... ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 3567889999999876332 2222 466666665432 2344433333 5699886
No 171
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=77.43 E-value=14 Score=23.09 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=32.5
Q ss_pred eEEeccCCChhHHHHHHHHHH-----hCCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCe
Q 027486 4 VKLIGAWPSPYVYRVIWALQL-----KGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEK 61 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 61 (223)
+..++.++|+.|+...-.+.. .++.+-.+ +... ...+...... ..+|++. .+|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i--~~~~-~~~~~~~~~v-~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKV--DVDE-NPELAEEYGV-RSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEE--ECCC-ChhHHHhcCc-ccccEEEEEECCE
Confidence 456788899999988777766 45444444 3333 2333333333 4689986 4554
No 172
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=77.26 E-value=5.6 Score=35.55 Aligned_cols=57 Identities=18% Similarity=0.277 Sum_probs=36.6
Q ss_pred ceEEeccCCChhHHHHHH----HHHHh-CCCceeeecCCCCCchHHH-hhCCCCCccceEeeCCeecc
Q 027486 3 QVKLIGAWPSPYVYRVIW----ALQLK-GIKYEYVEENLSNKSDMLL-KYNPVHQKVPVLVHDEKPIV 64 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~----~l~~~-gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~~~g~~l~ 64 (223)
.+++|..++||||-.+.- ++.+. ||..+.+.++ .. +++. +.+= ..||.++.||..+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~--~~-~~~~~~~~v--~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS--HF-PDLKDEYGI--MSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc--cc-HHHHHhCCc--eecCEEEECCEEEE
Confidence 367888889999875444 55555 6777777664 22 3334 3343 46999998875543
No 173
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=77.13 E-value=15 Score=23.72 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=36.6
Q ss_pred eEEeccCCChhHHHHHHHHHHh----CCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCee
Q 027486 4 VKLIGAWPSPYVYRVIWALQLK----GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKP 62 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 62 (223)
+..++.++|+.|+++.-.+... +-.+....++.....+.....+. ..+|++. .+|..
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~~g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI--TAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC--ccccEEEEEECCEE
Confidence 3566889999999886665532 34566667766544444455555 4699887 56654
No 174
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=75.65 E-value=14 Score=24.17 Aligned_cols=58 Identities=10% Similarity=0.041 Sum_probs=34.2
Q ss_pred eEEeccCCChhHHHHHHHHHH----hCCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCeec
Q 027486 4 VKLIGAWPSPYVYRVIWALQL----KGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKPI 63 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 63 (223)
+.+|+.++|+.|+...-.+.. .+-.+....+|.+...+-....+- ..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v--~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI--MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC--eeccEEEEEECCeEE
Confidence 456788999999977666644 122355556665443333333333 4689886 566543
No 175
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=73.83 E-value=3.1 Score=36.73 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=42.8
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCC---CceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccc----hHHHHHHHHh
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGI---KYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVE----STVILEYIEE 75 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~e----S~~I~~yL~~ 75 (223)
.+++|..+.||||-.+.-++...-+ .++...++....++ +.....- ..||.+..||..+.+ -..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~-~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD-EVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh-HHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 4789999999999876665544433 23344444334333 3333333 579999977765544 2346666655
Q ss_pred h
Q 027486 76 A 76 (223)
Q Consensus 76 ~ 76 (223)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 3
No 176
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=73.60 E-value=2 Score=33.38 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=44.9
Q ss_pred HHHHHHHHHcccCCCCccccCCCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhhchhhhH
Q 027486 127 KEKLKIIEEQGLGDKKFFGGNEIGMADLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFRSHPVIK 197 (223)
Q Consensus 127 ~~~l~~l~e~~L~~~~~l~G~~~s~aD~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~~ 197 (223)
.+.+..+ +..|.+.+|+.|.+++-.|+.++..+.-- .. ...+++..+|+..+.+.-...
T Consensus 10 ~~glk~l-~~sLA~ks~~~g~~~s~edv~vf~al~~e----------p~-s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKL-NKSLAEKSYIEGYQLSKEDVVVFAALGVE----------PQ-SARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhh-hHhhhcccCCCCCCcccccceeehhcccC----------cc-hhhhhHHHHHHHHHHHHHHHH
Confidence 4678899 99999999999999999999887643221 11 246788899998888865554
No 177
>PRK09381 trxA thioredoxin; Provisional
Probab=73.59 E-value=20 Score=23.94 Aligned_cols=57 Identities=14% Similarity=-0.004 Sum_probs=33.7
Q ss_pred EEeccCCChhHHHHHHHHH----HhCCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCeec
Q 027486 5 KLIGAWPSPYVYRVIWALQ----LKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKPI 63 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 63 (223)
..++.++||.|+...-.++ ..+-.+....++......-....+. ..+|+++ .+|..+
T Consensus 26 v~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 26 VDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI--RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC--CcCCEEEEEeCCeEE
Confidence 4567889999997653332 2222356666666543333334454 5799986 566544
No 178
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=73.15 E-value=13 Score=25.48 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=32.2
Q ss_pred eEEe-ccCCChhHHHHHHHHHHhCCC---ceeeecCCCCCchHHHhhCCCCCccceEe
Q 027486 4 VKLI-GAWPSPYVYRVIWALQLKGIK---YEYVEENLSNKSDMLLKYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly-~~~~sp~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 57 (223)
+.++ +-++||+|+.++-++....-. ++...++.+. .++....... ..+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~-~~~l~~~~~v-~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDE-DKEKAEKYGV-ERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCc-CHHHHHHcCC-CcCCEEE
Confidence 4455 567999999887777644322 3444555443 4455544444 6799997
No 179
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=73.03 E-value=20 Score=24.45 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=35.9
Q ss_pred EEeccCCChhHHHHHHHHHHhC--C-CceeeecCCCCCchHHHhhCCCCCccceEe--eCCeecc
Q 027486 5 KLIGAWPSPYVYRVIWALQLKG--I-KYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKPIV 64 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~~g--i-~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l~ 64 (223)
..|+.++|+.|+.+.-.+...- . .+....||.... +...+.... ..+|++. .+|..+.
T Consensus 27 V~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-~~l~~~~~v-~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 27 CHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-PFLVEKLNI-KVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-HHHHHHCCC-ccCCEEEEEECCEEEE
Confidence 4668899999997776664421 1 245566665543 333343343 5799997 5776654
No 180
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=72.76 E-value=3.2 Score=36.69 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=42.9
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCC---ceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccch----HHHHHHHHh
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIK---YEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVES----TVILEYIEE 75 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS----~~I~~yL~~ 75 (223)
.+++|..+.||||-.+.-++...-+. ++...++....++...+.+- ..||.+..||..+.+. ..+++.+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v--~~VP~~~i~~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGI--QGVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCC--cccCEEEECCcEEEecCCCHHHHHHHHhh
Confidence 47899999999998776666554432 33333444443444333333 5799999777655442 344555544
Q ss_pred h
Q 027486 76 A 76 (223)
Q Consensus 76 ~ 76 (223)
.
T Consensus 198 ~ 198 (515)
T TIGR03140 198 T 198 (515)
T ss_pred c
Confidence 3
No 181
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=70.04 E-value=22 Score=24.06 Aligned_cols=57 Identities=12% Similarity=0.019 Sum_probs=31.7
Q ss_pred eEEeccCCChhHHHHHHHH-----HHhCCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCee
Q 027486 4 VKLIGAWPSPYVYRVIWAL-----QLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKP 62 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 62 (223)
+..++.++|+.|+...-.+ .+.+..+....|+.+.. +........ ..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHHHHcCC-ccCCEEEEEECCEE
Confidence 3456888999998554332 23333455556665432 233333333 5799987 56643
No 182
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=68.83 E-value=23 Score=27.21 Aligned_cols=53 Identities=15% Similarity=0.038 Sum_probs=33.0
Q ss_pred eEEeccCCChhHHHHHHHHHHhC---CCceeeecCCCCCchHHHhhCCCCCccceEee
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKG---IKYEYVEENLSNKSDMLLKYNPVHQKVPVLVH 58 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~g---i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~ 58 (223)
+++|+.++||+|..+.-++...- -.++...+|.... ++......- ..+|++..
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-~~~~~~~~V-~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-PDLAEKYGV-MSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-HHHHHHhCC-ccCCEEEE
Confidence 56789999999998887766532 1244445565443 333333333 46999984
No 183
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=64.58 E-value=35 Score=21.90 Aligned_cols=55 Identities=20% Similarity=0.139 Sum_probs=32.1
Q ss_pred EEeccCCChhHHHHHHHHHH----hCCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCe
Q 027486 5 KLIGAWPSPYVYRVIWALQL----KGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEK 61 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 61 (223)
..++.++|+.|+...-.+.. .+-.+....++.........+.+- ..+|++. .+|.
T Consensus 19 i~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~P~~~~~~~g~ 79 (101)
T TIGR01068 19 VDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI--RSIPTLLLFKNGK 79 (101)
T ss_pred EEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC--CcCCEEEEEeCCc
Confidence 45577889999876544432 232366666665543333344444 4699987 4553
No 184
>PTZ00051 thioredoxin; Provisional
Probab=64.39 E-value=33 Score=22.19 Aligned_cols=57 Identities=14% Similarity=-0.007 Sum_probs=32.2
Q ss_pred eEEeccCCChhHHHHHHHHHHh---CCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCee
Q 027486 4 VKLIGAWPSPYVYRVIWALQLK---GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKP 62 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~---gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 62 (223)
+..++.++|+.|+...-.+... .-.+....++......-..+.+- ..+|+++ .+|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENI--TSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCC--ceeeEEEEEeCCeE
Confidence 3467889999999775555432 22344555554432222333343 5699887 45544
No 185
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=63.29 E-value=26 Score=24.05 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=12.7
Q ss_pred eEEeccCCChhHHHHH
Q 027486 4 VKLIGAWPSPYVYRVI 19 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr 19 (223)
+..++.++||+|++..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 3566888999999875
No 186
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=63.10 E-value=35 Score=22.31 Aligned_cols=56 Identities=5% Similarity=-0.193 Sum_probs=31.7
Q ss_pred eEEeccCCChhHHHHHHHHHHh----CCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCe
Q 027486 4 VKLIGAWPSPYVYRVIWALQLK----GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEK 61 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 61 (223)
+..++.++|+.|+...-.+... +-.+.+..++.+....-..+.+- ..+|++. .+|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV--NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC--CccCEEEEEcCCC
Confidence 3467889999999665444222 21255566666543332233333 5789986 4554
No 187
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.16 E-value=24 Score=24.63 Aligned_cols=68 Identities=16% Similarity=0.110 Sum_probs=41.8
Q ss_pred cCCChhHHHH----HHHHHHhCCCceeeecCCCCCchHHHhhCCCC------CccceEe--e-CCeeccchHHHHHHHHh
Q 027486 9 AWPSPYVYRV----IWALQLKGIKYEYVEENLSNKSDMLLKYNPVH------QKVPVLV--H-DEKPIVESTVILEYIEE 75 (223)
Q Consensus 9 ~~~sp~~~~v----r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~------~~vP~L~--~-~g~~l~eS~~I~~yL~~ 75 (223)
-++||.|.++ +=.+.+..-...++.++..+++.|--..||+. --||+|. . .+..+.+..+-..+|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 4689998854 44555556667777776666555433334431 2389997 3 35667777776677665
Q ss_pred h
Q 027486 76 A 76 (223)
Q Consensus 76 ~ 76 (223)
.
T Consensus 122 ~ 122 (128)
T KOG3425|consen 122 M 122 (128)
T ss_pred H
Confidence 4
No 188
>PRK10996 thioredoxin 2; Provisional
Probab=60.76 E-value=51 Score=23.37 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=34.5
Q ss_pred eEEeccCCChhHHHHHHHHHH----hCCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCeec
Q 027486 4 VKLIGAWPSPYVYRVIWALQL----KGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKPI 63 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 63 (223)
+..++.++|+.|+...-.+.. .+-.+....+|......-..+.+- ..+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V--~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI--RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC--CccCEEEEEECCEEE
Confidence 346688899999965433332 233456666666544333334444 5699987 566543
No 189
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=57.73 E-value=53 Score=22.55 Aligned_cols=59 Identities=8% Similarity=-0.059 Sum_probs=31.4
Q ss_pred EEeccCCChhHHHHHHHHHH------hCCCceeeecCCCCCchHHHhhCCCCCccceEe--e-CCeecc
Q 027486 5 KLIGAWPSPYVYRVIWALQL------KGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--H-DEKPIV 64 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~------~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~-~g~~l~ 64 (223)
.-++.++|+.|+...-.+.. .+..|..+.++-.. .+.-...+..++-+|+++ + +|..+.
T Consensus 24 V~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 24 LLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCch
Confidence 34577899999977544444 22334444444222 121234455423499997 3 565544
No 190
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=57.15 E-value=9 Score=26.23 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=21.9
Q ss_pred cceEe-eCCeeccchHHHHHHHHhhCC
Q 027486 53 VPVLV-HDEKPIVESTVILEYIEEAWP 78 (223)
Q Consensus 53 vP~L~-~~g~~l~eS~~I~~yL~~~~~ 78 (223)
+|.+. .+|.++++|..|+++.+.+|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35555 799999999999999999875
No 191
>PHA03075 glutaredoxin-like protein; Provisional
Probab=57.07 E-value=19 Score=24.90 Aligned_cols=68 Identities=16% Similarity=0.189 Sum_probs=47.7
Q ss_pred CC-ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeC-CeeccchHHHHHHHHhhC
Q 027486 1 ME-QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHD-EKPIVESTVILEYIEEAW 77 (223)
Q Consensus 1 M~-~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~-g~~l~eS~~I~~yL~~~~ 77 (223)
|. .+.|+|-|.|+-|+-+.-+|....-+|+...|+.-+. .+-. |++-+|..+ +..+. ..+.+|+...+
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf------FsK~-g~v~~lg~d~~y~lI--nn~~~~lgne~ 70 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSF------FSKD-GQVKVLGMDKGYTLI--NNFFKHLGNEY 70 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee------eccC-CceEEEecccceehH--HHHHHhhcccE
Confidence 44 5789999999999999999999999999999874321 1222 778888753 43333 23556766543
No 192
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=56.06 E-value=41 Score=25.83 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=33.3
Q ss_pred eEEecc---CCChhHHHHHHHHHHh-----CCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCe
Q 027486 4 VKLIGA---WPSPYVYRVIWALQLK-----GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEK 61 (223)
Q Consensus 4 ~~Ly~~---~~sp~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 61 (223)
+.+|+. ++||.|+.+.=++... ++.+..+.++.+. .+......-. ..+|++. .+|.
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~-~~~l~~~~~V-~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE-DKEEAEKYGV-ERVPTTIILEEGK 88 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc-cHHHHHHcCC-CccCEEEEEeCCe
Confidence 567777 8999999777766554 2334445554433 3344333333 5799997 4553
No 193
>PHA02278 thioredoxin-like protein
Probab=55.81 E-value=60 Score=21.78 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=30.6
Q ss_pred EeccCCChhHHHHHHHHHHh----CCCceeeecCCCCC---chHHH-hhCCCCCccceEe--eCCeec
Q 027486 6 LIGAWPSPYVYRVIWALQLK----GIKYEYVEENLSNK---SDMLL-KYNPVHQKVPVLV--HDEKPI 63 (223)
Q Consensus 6 Ly~~~~sp~~~~vr~~l~~~----gi~~~~~~v~~~~~---~~~~~-~~~p~~~~vP~L~--~~g~~l 63 (223)
-|+-++|+.|+.+.=.+... +.......++.+.. .+.+. +.+- ..+|++. .+|..+
T Consensus 20 ~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I--~~iPT~i~fk~G~~v 85 (103)
T PHA02278 20 MITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI--MSTPVLIGYKDGQLV 85 (103)
T ss_pred EEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC--ccccEEEEEECCEEE
Confidence 35778999999666444332 22233444444421 23333 3444 4699997 577554
No 194
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=55.79 E-value=38 Score=21.21 Aligned_cols=37 Identities=22% Similarity=0.574 Sum_probs=21.7
Q ss_pred chHHHHHHHHhhCCC--CCCCCCCHHHHHHHHHHHHHHhhh
Q 027486 65 ESTVILEYIEEAWPR--HPLLPKDPYDRAAARFWIKFSDEN 103 (223)
Q Consensus 65 eS~~I~~yL~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~~ 103 (223)
|...|+.++..-||. ..+.+++ .+..++.|.....+.
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~--~k~~v~~W~~~L~d~ 43 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTD--SKETVDLWYDMLKDY 43 (71)
T ss_dssp HHHHHHHHHHHHST---TT---ST--HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCcchhccchhh--HHHHHHHHHHHHHhC
Confidence 556788888998883 2344444 245666776666553
No 195
>PF13728 TraF: F plasmid transfer operon protein
Probab=54.95 E-value=43 Score=25.96 Aligned_cols=52 Identities=12% Similarity=-0.001 Sum_probs=34.9
Q ss_pred eEEeccCCChhHH----HHHHHHHHhCCCceeeecCCC--------CCchH-HHhhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVY----RVIWALQLKGIKYEYVEENLS--------NKSDM-LLKYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~----~vr~~l~~~gi~~~~~~v~~~--------~~~~~-~~~~~p~~~~vP~L~ 57 (223)
+.+++...||+|+ .++.+....|+++..+.+|.. ..... ...++. ..+|+|.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcCCEEE
Confidence 4566778999997 567777778888888877632 01122 234555 4799986
No 196
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=54.39 E-value=57 Score=21.82 Aligned_cols=53 Identities=9% Similarity=0.096 Sum_probs=30.3
Q ss_pred eEEeccCCChhHHHHHHHHHH-----hCCCceeeecCCCCCchHHH-hhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVYRVIWALQL-----KGIKYEYVEENLSNKSDMLL-KYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 57 (223)
+..|+.++||.|+..--.+.. .+..+....++.+.....+. +.... ..+|++.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 456789999999966443322 23345555666543222332 22344 5799886
No 197
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=52.77 E-value=10 Score=26.49 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=13.4
Q ss_pred ccceEe--eCCeeccchHHHHHHHHhhCC
Q 027486 52 KVPVLV--HDEKPIVESTVILEYIEEAWP 78 (223)
Q Consensus 52 ~vP~L~--~~g~~l~eS~~I~~yL~~~~~ 78 (223)
.-|-|. -+|+.++|+-||++|+..-|.
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 447785 468999999999999988874
No 198
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=52.11 E-value=21 Score=26.56 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=26.9
Q ss_pred ceEEeccCCChhHH----HHHHHHHHh-CCCceeeecCCCC
Q 027486 3 QVKLIGAWPSPYVY----RVIWALQLK-GIKYEYVEENLSN 38 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~----~vr~~l~~~-gi~~~~~~v~~~~ 38 (223)
++++|+...||||. +++-+++.. ++.++.+++.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 37899999999987 445555666 8888888876543
No 199
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=51.93 E-value=62 Score=20.76 Aligned_cols=56 Identities=16% Similarity=0.075 Sum_probs=32.5
Q ss_pred EEeccCCChhHHHHHHHHHHh----CCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCee
Q 027486 5 KLIGAWPSPYVYRVIWALQLK----GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKP 62 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 62 (223)
..++.++|+.|+...-.+... +-.+....++.... ..+...-.. ..+|+++ .+|..
T Consensus 17 v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 17 VDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-PQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-HHHHHHcCC-CCCCEEEEEeCCEE
Confidence 455788999999765555432 22355566665543 344333333 4699997 56644
No 200
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=50.16 E-value=72 Score=21.01 Aligned_cols=55 Identities=11% Similarity=0.044 Sum_probs=29.9
Q ss_pred EEeccCCChhHHHHHHHHHH----hC-CCceeeecCCCCCchHHHhhCCCCCccceEe--eCCee
Q 027486 5 KLIGAWPSPYVYRVIWALQL----KG-IKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKP 62 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~----~g-i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~ 62 (223)
..|+.++|+.|+...-.+.. .+ -.+.+..++.+ ..+.....+- ..+|++. .+|..
T Consensus 22 v~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v--~~~Pt~~~~~~g~~ 83 (102)
T cd02948 22 VDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG--KCEPTFLFYKNGEL 83 (102)
T ss_pred EEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC--CcCcEEEEEECCEE
Confidence 45688899999966544432 22 12344455544 2232333333 5689886 56644
No 201
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=49.19 E-value=77 Score=23.06 Aligned_cols=61 Identities=8% Similarity=0.103 Sum_probs=34.2
Q ss_pred eEEeccCCChhHHHHHHHHHH-----hCCCceeeecCCCCCchHHHhhCCCC----CccceEe--eCCeecc
Q 027486 4 VKLIGAWPSPYVYRVIWALQL-----KGIKYEYVEENLSNKSDMLLKYNPVH----QKVPVLV--HDEKPIV 64 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~----~~vP~L~--~~g~~l~ 64 (223)
+..|+.++||.|+.+--.+.. .+-.++...||.+...+--.+.+-.. +++|++. .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 446788899999966543322 22346666777654332222233210 2389997 6776654
No 202
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.42 E-value=30 Score=27.81 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhCCCceeeecCCCC-CchHHHh---h-CCCCCccceEeeCCeeccchHHHHHH
Q 027486 15 VYRVIWALQLKGIKYEYVEENLSN-KSDMLLK---Y-NPVHQKVPVLVHDEKPIVESTVILEY 72 (223)
Q Consensus 15 ~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~---~-~p~~~~vP~L~~~g~~l~eS~~I~~y 72 (223)
|..||.+|+-.+|.|+++.|+++. ..+++.. . .-. ..+|.+..+|..|..-.-|.+.
T Consensus 150 C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~-~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 150 CNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKA-VSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhccccc-CccCeEEEccEEeccHHHhhhh
Confidence 889999999999999999999872 2233322 2 122 5699888899888876666554
No 203
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=48.38 E-value=28 Score=25.00 Aligned_cols=72 Identities=14% Similarity=0.064 Sum_probs=46.7
Q ss_pred ceEEeccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHh-hC-C-CCCccceEeeCCeec---cchHHHHHHHHhh
Q 027486 3 QVKLIGAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLK-YN-P-VHQKVPVLVHDEKPI---VESTVILEYIEEA 76 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~-~~-p-~~~~vP~L~~~g~~l---~eS~~I~~yL~~~ 76 (223)
++..|..|.|+.|..--=.|+.+|+.++.+..+-. ..+++ .+ | ....==+.+.+|..+ .--.+|.+.|++.
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~---~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~ 103 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF---LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEK 103 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH---HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCC
Confidence 57899999999999888889999999888866421 11111 10 0 001122445666554 2357899999887
Q ss_pred C
Q 027486 77 W 77 (223)
Q Consensus 77 ~ 77 (223)
.
T Consensus 104 p 104 (149)
T COG3019 104 P 104 (149)
T ss_pred C
Confidence 5
No 204
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=47.75 E-value=95 Score=21.70 Aligned_cols=60 Identities=13% Similarity=0.164 Sum_probs=35.9
Q ss_pred EeccCCChhHHHHHH-------HHHHhCCCceeeecCCCCCchH---HHh----hCCCCCccceEe---eCCeeccch
Q 027486 6 LIGAWPSPYVYRVIW-------ALQLKGIKYEYVEENLSNKSDM---LLK----YNPVHQKVPVLV---HDEKPIVES 66 (223)
Q Consensus 6 Ly~~~~sp~~~~vr~-------~l~~~gi~~~~~~v~~~~~~~~---~~~----~~p~~~~vP~L~---~~g~~l~eS 66 (223)
.++..+|++|++.-- +....+-.|..+.+|.+..++- +.. .+.. +-+|+++ .+|..+..+
T Consensus 21 ~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 21 SIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEeee
Confidence 357889999997742 2333344688888876543322 111 1122 3489887 467887765
No 205
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=47.48 E-value=76 Score=20.51 Aligned_cols=57 Identities=14% Similarity=-0.039 Sum_probs=29.8
Q ss_pred eEEeccCCChhHHHHHH----HHHHhC--CCceeeecCCCC-CchHHHhhCCCCCccceEe--eCCe
Q 027486 4 VKLIGAWPSPYVYRVIW----ALQLKG--IKYEYVEENLSN-KSDMLLKYNPVHQKVPVLV--HDEK 61 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~----~l~~~g--i~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~--~~g~ 61 (223)
+.+|+.++||.|+...= +..... -.+....++... ..+.+...... ..+|+++ .+|.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEEEEeCCC
Confidence 45678889999997642 222221 224444455442 13344333333 4689886 3454
No 206
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.78 E-value=1.6e+02 Score=24.15 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=46.4
Q ss_pred EEeccCCChhHHHHHH----HHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCeeccc------hHHHHHH
Q 027486 5 KLIGAWPSPYVYRVIW----ALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKPIVE------STVILEY 72 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l~e------S~~I~~y 72 (223)
.+++.|+|+-|...-= +.++.+=.|....|+.+..+.---.++. ..||+.. .+|.++.+ -..|-++
T Consensus 48 V~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi--qsIPtV~af~dGqpVdgF~G~qPesqlr~~ 125 (304)
T COG3118 48 VDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV--QSIPTVYAFKDGQPVDGFQGAQPESQLRQF 125 (304)
T ss_pred EEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc--CcCCeEEEeeCCcCccccCCCCcHHHHHHH
Confidence 4667888888875433 3344555788888887654333334555 5799986 56765532 2478888
Q ss_pred HHhhCC
Q 027486 73 IEEAWP 78 (223)
Q Consensus 73 L~~~~~ 78 (223)
|++..|
T Consensus 126 ld~~~~ 131 (304)
T COG3118 126 LDKVLP 131 (304)
T ss_pred HHHhcC
Confidence 888765
No 207
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=45.16 E-value=1e+02 Score=21.39 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=30.6
Q ss_pred CCChhHHHHHH----HHHHhCCCceeeecCCCC------CchHHHhhCCCCC-ccceEe--eCCeeccch
Q 027486 10 WPSPYVYRVIW----ALQLKGIKYEYVEENLSN------KSDMLLKYNPVHQ-KVPVLV--HDEKPIVES 66 (223)
Q Consensus 10 ~~sp~~~~vr~----~l~~~gi~~~~~~v~~~~------~~~~~~~~~p~~~-~vP~L~--~~g~~l~eS 66 (223)
++||.|+.+.= +.....-.+.++.|+.++ ....+....-. . .+|++. .++..+.|.
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~~ 106 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVED 106 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecch
Confidence 68999996543 333333235666666543 23444432222 3 699997 455555553
No 208
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=45.07 E-value=57 Score=21.98 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=32.9
Q ss_pred EEeccCCChhHHHHHHHHHHhCC---CceeeecCCCCCchHHHhhCCCCCccceEe--eCCeeccc
Q 027486 5 KLIGAWPSPYVYRVIWALQLKGI---KYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKPIVE 65 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l~e 65 (223)
..++.++|+.|+.+.-.++..-- .+....+|.... .+....-. ..+|++. .+|..+..
T Consensus 29 v~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~ 91 (113)
T cd02957 29 VHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDN 91 (113)
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEE
Confidence 45688899999976655543211 234455554432 33333232 4799997 57766543
No 209
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=43.47 E-value=92 Score=20.32 Aligned_cols=52 Identities=10% Similarity=-0.090 Sum_probs=29.3
Q ss_pred eEEeccCCChhHHHHHHHHH----HhCCCceeeecCCCCCchHHHhhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVYRVIWALQ----LKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 57 (223)
+..|+.++|+.|+++.=.+. ..+-.+....+|.+.. +.+...... ..+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~i-~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-ESLCQQANI-RAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHcCC-CcccEEE
Confidence 34678899999986544332 2222355556665543 333332333 5799887
No 210
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=41.78 E-value=85 Score=20.75 Aligned_cols=56 Identities=14% Similarity=0.061 Sum_probs=32.0
Q ss_pred eEEeccCCChhHHHHHHHHHHh-----C-C----CceeeecCCCCCchHHHhhCCCCCccceEe--eCCe
Q 027486 4 VKLIGAWPSPYVYRVIWALQLK-----G-I----KYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEK 61 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~-----g-i----~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 61 (223)
+..++.++|+.|+...-.+... + . .+....+|.+....-..+.+- ..+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v--~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI--NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC--CcCCEEEEEeCCc
Confidence 3466889999999776555321 1 1 245555665543332333443 5789987 4554
No 211
>PRK09266 hypothetical protein; Provisional
Probab=41.74 E-value=43 Score=26.67 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=39.4
Q ss_pred HHHHhCCCceeeecCCC---CCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHhhCC
Q 027486 21 ALQLKGIKYEYVEENLS---NKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEEAWP 78 (223)
Q Consensus 21 ~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~~~~ 78 (223)
.+...|+++++..++.. ...+.|. .|...|-+||-..|+..+.++..|.+.|.+.+.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfl-tnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFA-CNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhh-hcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 44556899999988764 3333444 454348999999888877655678788777663
No 212
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=40.64 E-value=32 Score=22.91 Aligned_cols=20 Identities=20% Similarity=0.106 Sum_probs=13.6
Q ss_pred eEEeccCCChhHHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQ 23 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~ 23 (223)
+.+++.++||||++..-.+.
T Consensus 9 v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 45678899999998865554
No 213
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=40.18 E-value=1.4e+02 Score=22.20 Aligned_cols=57 Identities=12% Similarity=-0.042 Sum_probs=33.1
Q ss_pred EeccCCChhHHHHHHHH---HHhCCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCeeccc
Q 027486 6 LIGAWPSPYVYRVIWAL---QLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKPIVE 65 (223)
Q Consensus 6 Ly~~~~sp~~~~vr~~l---~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l~e 65 (223)
.++.++|+.|+.+-=.| +..--.+.++.|+.... ......+. ..+|++. .+|..+..
T Consensus 89 ~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v~~ 150 (175)
T cd02987 89 HIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELIGN 150 (175)
T ss_pred EEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEEEE
Confidence 45778999998654333 22222356666665432 33344454 5799997 57766543
No 214
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=39.75 E-value=1.1e+02 Score=20.09 Aligned_cols=52 Identities=8% Similarity=-0.105 Sum_probs=28.6
Q ss_pred eEEeccCCChhHHHHHHHH----HHh---CCCceeeecCCCCCchHHHhhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVYRVIWAL----QLK---GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l----~~~---gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 57 (223)
+..|+.++||.|++..-.+ ... +..+....++......-....+. ..+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I--~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV--RGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC--ccccEEE
Confidence 3456788999999554333 222 33455555554432222233444 4699986
No 215
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=39.26 E-value=70 Score=19.86 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=21.0
Q ss_pred ccceEeeCCeeccchHHHHHHHHhhCC
Q 027486 52 KVPVLVHDEKPIVESTVILEYIEEAWP 78 (223)
Q Consensus 52 ~vP~L~~~g~~l~eS~~I~~yL~~~~~ 78 (223)
+=||+..+| ..+|-.+|.+||....+
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~~ 40 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNGG 40 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTSS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCCC
Confidence 358888777 88999999999998544
No 216
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=39.14 E-value=1e+02 Score=20.69 Aligned_cols=69 Identities=10% Similarity=0.146 Sum_probs=40.3
Q ss_pred EeccCCChhHHHHHHHHHHhCC--CceeeecCCCCCch--HHHhhC---CCCCccceEeeCCe-eccchHHHHHHHHhh
Q 027486 6 LIGAWPSPYVYRVIWALQLKGI--KYEYVEENLSNKSD--MLLKYN---PVHQKVPVLVHDEK-PIVESTVILEYIEEA 76 (223)
Q Consensus 6 Ly~~~~sp~~~~vr~~l~~~gi--~~~~~~v~~~~~~~--~~~~~~---p~~~~vP~L~~~g~-~l~eS~~I~~yL~~~ 76 (223)
|+|-..||.|.+..-.+.-..- .++.+.+......+ .....+ .. ..+-+ ..+|. ...++.|+..-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 4677899999988777777764 35555552111111 111111 22 23444 55665 999999998886555
No 217
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=37.00 E-value=48 Score=25.29 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=24.6
Q ss_pred ceEEeccCCChhHHH----HHHHHHHhCCCceeeecCC
Q 027486 3 QVKLIGAWPSPYVYR----VIWALQLKGIKYEYVEENL 36 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~----vr~~l~~~gi~~~~~~v~~ 36 (223)
++.+|+...||||.- ++-++...+++++.+++.+
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 478999999999873 4445556677777777654
No 218
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=36.95 E-value=28 Score=24.28 Aligned_cols=60 Identities=12% Similarity=0.115 Sum_probs=28.3
Q ss_pred ccCCChhHHHHHHH----HHHhCCCceeeecCCCCC------chHHHhh--CCCCCccceEe--eCCeeccchHH
Q 027486 8 GAWPSPYVYRVIWA----LQLKGIKYEYVEENLSNK------SDMLLKY--NPVHQKVPVLV--HDEKPIVESTV 68 (223)
Q Consensus 8 ~~~~sp~~~~vr~~----l~~~gi~~~~~~v~~~~~------~~~~~~~--~p~~~~vP~L~--~~g~~l~eS~~ 68 (223)
+.++||.|+++.-. +....-....+.+...++ .-.|+.. -.. ..||+|+ .++..+.|...
T Consensus 34 g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 34 GQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp S-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEECTSS-EEEHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEEECCCCccchhhh
Confidence 35689999966533 333322455554444433 2234431 112 4599998 45566766543
No 219
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=35.94 E-value=1.6e+02 Score=20.92 Aligned_cols=57 Identities=14% Similarity=-0.004 Sum_probs=29.8
Q ss_pred EEeccCCChhHHHHHHHHHH----hCCCceeeecCCCCC-chHH-HhhCCCCCccceEe--e-CCeec
Q 027486 5 KLIGAWPSPYVYRVIWALQL----KGIKYEYVEENLSNK-SDML-LKYNPVHQKVPVLV--H-DEKPI 63 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~----~gi~~~~~~v~~~~~-~~~~-~~~~p~~~~vP~L~--~-~g~~l 63 (223)
..|+.++|+.|+...=.+.. .+-.+.++.|+.+.. ...+ ...+- ..+|+++ + +|..+
T Consensus 25 V~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V--~~iPt~v~~~~~G~~v 90 (142)
T cd02950 25 VEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV--DGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC--CCCCEEEEECCCCCEE
Confidence 45577899999866544432 222344555544321 1222 33333 4589886 3 46544
No 220
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=35.74 E-value=1.2e+02 Score=19.55 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=29.7
Q ss_pred eEEeccCCChhHHHHHHHHHH-----hCCCceeeecCCCCCchHHHhhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVYRVIWALQL-----KGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 57 (223)
+..++.++||.|+...=.+.. .+..+....++... .+.+.+.... ..+|++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-TALPTIY 76 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-cccCEEE
Confidence 456788899999865533322 23345555666543 3334333333 5789987
No 221
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=35.49 E-value=1.2e+02 Score=19.43 Aligned_cols=56 Identities=9% Similarity=0.056 Sum_probs=31.1
Q ss_pred eEEeccCCChhHHHHHHHH-----HHhC--CCceeeecCCCCCchHHHhhCCCCCccceEe--eCCe
Q 027486 4 VKLIGAWPSPYVYRVIWAL-----QLKG--IKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEK 61 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l-----~~~g--i~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~ 61 (223)
+..++.++|+.|+...=.+ ...+ -.+....++...........+. ..+|++. .+|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV--RGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC--CcCCEEEEEeCCC
Confidence 3466888999999653322 2223 2455566665543333334443 4699886 4553
No 222
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=34.74 E-value=42 Score=20.27 Aligned_cols=31 Identities=23% Similarity=-0.001 Sum_probs=20.0
Q ss_pred EEeccCCChhHHHHHHHHHHhCCCceeeecC
Q 027486 5 KLIGAWPSPYVYRVIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~v~ 35 (223)
+||+.....-+..++-+|+..||++....-.
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 6777777767999999999999999888554
No 223
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=34.70 E-value=1.1e+02 Score=23.49 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=34.0
Q ss_pred eEEeccCCChhHHHHHHHHHHhCCCceee---ecCCCCCchHHHhhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGIKYEYV---EENLSNKSDMLLKYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~---~v~~~~~~~~~~~~~p~~~~vP~L~ 57 (223)
+.||-.....--.+||..+.-.|||-+.+ .|++....-.+..+.-. |++|+++
T Consensus 137 ~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg~~-g~lP~~l 192 (200)
T TIGR03759 137 LDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLGLQ-GQLPAVV 192 (200)
T ss_pred eeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHccCC-CCCCEEE
Confidence 44553332334668888899999985544 56665445555666544 7899997
No 224
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=34.46 E-value=52 Score=20.67 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=17.2
Q ss_pred eEEeccCCChhHHHHHHHHHHh
Q 027486 4 VKLIGAWPSPYVYRVIWALQLK 25 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~ 25 (223)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678899999999877766654
No 225
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=34.27 E-value=42 Score=25.31 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=17.5
Q ss_pred eEEeccCCChhHHHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQL 24 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~ 24 (223)
+.+|+.+.||||++..-.+..
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEECCCCccHHHHHHHHhh
Confidence 567888999999999877764
No 226
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=33.43 E-value=1.4e+02 Score=19.50 Aligned_cols=53 Identities=13% Similarity=-0.138 Sum_probs=28.7
Q ss_pred eEEeccCCChhHHHHHHHHH----HhCCCceeeecCCCC-CchHHHhhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVYRVIWALQ----LKGIKYEYVEENLSN-KSDMLLKYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~----~~gi~~~~~~v~~~~-~~~~~~~~~p~~~~vP~L~ 57 (223)
+..++.++|+.|+...-.+. ..+-.+....++.+. ....+...... ..+|++.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i-~~~Pt~~ 79 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV-QGFPTLK 79 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC-CcCCEEE
Confidence 45678889999986543332 222234455555543 12333333333 5699987
No 227
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=33.33 E-value=1.1e+02 Score=20.89 Aligned_cols=52 Identities=10% Similarity=-0.139 Sum_probs=30.3
Q ss_pred eEEeccCCChhHHHHHHHHHHhCC----CceeeecCCCCCchHHH-hhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGI----KYEYVEENLSNKSDMLL-KYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi----~~~~~~v~~~~~~~~~~-~~~p~~~~vP~L~ 57 (223)
+..|+-++|+.|+.+.-.+....- ......||.+.....-. +.+- ..+|++.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I--~~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF--FYFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC--cccCEEE
Confidence 346788999999977665554432 24455666553222221 2333 4689987
No 228
>KOG2456 consensus Aldehyde dehydrogenase [Energy production and conversion]
Probab=33.09 E-value=2.8e+02 Score=24.01 Aligned_cols=130 Identities=18% Similarity=0.105 Sum_probs=64.1
Q ss_pred ccCCChhHHHHHHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEeeCCeeccchHHHHHHHHh-hC---CCCCCC
Q 027486 8 GAWPSPYVYRVIWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLVHDEKPIVESTVILEYIEE-AW---PRHPLL 83 (223)
Q Consensus 8 ~~~~sp~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~~~g~~l~eS~~I~~yL~~-~~---~~~~l~ 83 (223)
-+.+||..-++.|..+.+.+--.+-++ ||+-|+.++++. |-..-++.+.. ++ ++.=+.
T Consensus 185 fyTGsp~VgkIim~aAaKhLTPvtLEL---------------GGKsP~~vd~~~---d~~ia~~RI~~gk~~N~GQtCva 246 (477)
T KOG2456|consen 185 FYTGSPRVGKIIMAAAAKHLTPVTLEL---------------GGKSPCYVDKNC---DLKIAARRIAWGKWMNSGQTCVA 246 (477)
T ss_pred EecCCchHHHHHHHHHHhcCCcEEEEc---------------CCCCCeeecCCc---CHHHHHHHHHHHhhccCCCeecc
Confidence 467899999999999998874333333 488899997664 22333333322 22 111133
Q ss_pred CCCH-HHHHHHHHHHHHHhhhhhhHHHHhhcCCchhHHHH-HHHHHHHHHHHHHcccCC-CCccccCCCchhHHHHHHHH
Q 027486 84 PKDP-YDRAAARFWIKFSDENLAPTFVAFYIGVGEEHEKA-IKEAKEKLKIIEEQGLGD-KKFFGGNEIGMADLVFGWIA 160 (223)
Q Consensus 84 p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~e~~L~~-~~~l~G~~~s~aD~~~~~~l 160 (223)
|+-. -.......++..+ ...+..+|+.+....... +-.-.+.+..+ ...|.+ ++-..|++-.-+|.++.+++
T Consensus 247 pDYiL~~k~~~~kli~al----k~~l~eFYG~n~~eS~d~sRiIn~~hf~Rl-~~ll~~~~kv~~Gg~~d~~d~~I~PTI 321 (477)
T KOG2456|consen 247 PDYILCSKSIQPKLIDAL----KSTLKEFYGENPKESKDLSRIINQRHFQRL-SALLDETGKVAIGGESDESDRYIAPTI 321 (477)
T ss_pred CCeEEecHhhhHHHHHHH----HHHHHHHhCCCccccccHHHHhhHHHHHHH-HHHhcCCCceecCCccchhhcccCCeE
Confidence 3200 0011222333333 233344555433332222 11112344455 555554 56666666666666666643
No 229
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=32.49 E-value=1.5e+02 Score=19.50 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=29.5
Q ss_pred eEEeccCCChhHHHHHHHHHHhCC---CceeeecCCCCCchHHHhhCCCCCccceEe--eCC
Q 027486 4 VKLIGAWPSPYVYRVIWALQLKGI---KYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDE 60 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g 60 (223)
+..++.++|+.|+...=.+....- .+....++.....+.+...... ..+|++. ++|
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V-~~~PT~~lf~~g 82 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV-VGFPTILLFNST 82 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC-eecCEEEEEcCC
Confidence 345678899999876644432211 1334445544223333333333 4689886 444
No 230
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=32.45 E-value=45 Score=26.48 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=16.1
Q ss_pred eEEeccCCChhHHHHHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQ 23 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~ 23 (223)
+.+|.-+.||||++..--+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 56778999999999876654
No 231
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=32.39 E-value=64 Score=20.71 Aligned_cols=52 Identities=12% Similarity=-0.076 Sum_probs=28.5
Q ss_pred eEEeccCCChhHHHHHHHHHH-----hCC-CceeeecCCCCCchHHHhhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVYRVIWALQL-----KGI-KYEYVEENLSNKSDMLLKYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~-----~gi-~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 57 (223)
+.+|+.++|+.|+...-.+.. .+- .+....++... ...+...... ..+|++.
T Consensus 17 ~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~i-~~~P~~~ 74 (102)
T TIGR01126 17 LVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-EKDLASRFGV-SGFPTIK 74 (102)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-hHHHHHhCCC-CcCCEEE
Confidence 567889999999875433322 221 24444444433 3343333333 4699885
No 232
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=31.59 E-value=1.4e+02 Score=20.62 Aligned_cols=56 Identities=11% Similarity=0.031 Sum_probs=32.8
Q ss_pred EeccCCChhHHHHHHHHHHh--CCC--ceeeecCCCCCchHHHhhCCCCCccceEe--eCCeec
Q 027486 6 LIGAWPSPYVYRVIWALQLK--GIK--YEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKPI 63 (223)
Q Consensus 6 Ly~~~~sp~~~~vr~~l~~~--gi~--~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l 63 (223)
-++-++||.|+.+.=.+... ..+ .....||.+.. +++....-. ..+|++. .+|..+
T Consensus 20 ~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-~~la~~~~V-~~iPTf~~fk~G~~v 81 (114)
T cd02954 20 RFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-PDFNKMYEL-YDPPTVMFFFRNKHM 81 (114)
T ss_pred EEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-HHHHHHcCC-CCCCEEEEEECCEEE
Confidence 35778999999775555332 222 34556666543 444433333 4699997 566554
No 233
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=31.57 E-value=1.4e+02 Score=21.91 Aligned_cols=34 Identities=18% Similarity=0.032 Sum_probs=22.5
Q ss_pred EEe-ccCCChhHH-------HHHHHHHHhCCCceeeecCCCC
Q 027486 5 KLI-GAWPSPYVY-------RVIWALQLKGIKYEYVEENLSN 38 (223)
Q Consensus 5 ~Ly-~~~~sp~~~-------~vr~~l~~~gi~~~~~~v~~~~ 38 (223)
.|| +-.+||-|+ +..-.+...+-|++++.|+.+.
T Consensus 37 ~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 37 GLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred EEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 455 445777777 3444555667789999998763
No 234
>PTZ00102 disulphide isomerase; Provisional
Probab=31.26 E-value=2.7e+02 Score=24.07 Aligned_cols=72 Identities=10% Similarity=0.081 Sum_probs=42.4
Q ss_pred eEEeccCCChhHHHHHHHH-------HHhCCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCeec-----cchHHH
Q 027486 4 VKLIGAWPSPYVYRVIWAL-------QLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKPI-----VESTVI 69 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l-------~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l-----~eS~~I 69 (223)
+..++.++|+.|+++.=.+ ...+-++....++......-..+.+- ..+|++. .+|..+ .....|
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i--~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGV--RGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCC--CcccEEEEEECCceEEecCCCCHHHH
Confidence 4567889999998664211 12234566666765543333334443 3589886 444332 345678
Q ss_pred HHHHHhhC
Q 027486 70 LEYIEEAW 77 (223)
Q Consensus 70 ~~yL~~~~ 77 (223)
.+|+.+..
T Consensus 131 ~~~l~~~~ 138 (477)
T PTZ00102 131 VSWIKKLT 138 (477)
T ss_pred HHHHHHhh
Confidence 89988864
No 235
>PRK13947 shikimate kinase; Provisional
Probab=31.22 E-value=69 Score=23.20 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=27.8
Q ss_pred CCceEEeccCCChhHHHHHHHHHHhCCCceee
Q 027486 1 MEQVKLIGAWPSPYVYRVIWALQLKGIKYEYV 32 (223)
Q Consensus 1 M~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~ 32 (223)
|.++.|.+.++|+-+...+.+.+..|++|-..
T Consensus 1 m~~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 1 MKNIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 67788999999999999999999999887443
No 236
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=31.11 E-value=1.4e+02 Score=18.71 Aligned_cols=52 Identities=10% Similarity=-0.137 Sum_probs=31.0
Q ss_pred eEEeccCCChhHHHHHHHHHH----h--CCCceeeecCCCCCchHHHhhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVYRVIWALQL----K--GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~----~--gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 57 (223)
+.+|+.++|++|+...-.+.. . +-.+....++... ...+...... ..+|++.
T Consensus 19 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02961 19 LVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV-RGYPTIK 76 (101)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC-CCCCEEE
Confidence 456788899999976655533 2 3345666666544 3333333332 4689886
No 237
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.61 E-value=1e+02 Score=24.16 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=16.8
Q ss_pred ceEEeccCCChhHH--HHHHHHHHhCCC
Q 027486 3 QVKLIGAWPSPYVY--RVIWALQLKGIK 28 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~--~vr~~l~~~gi~ 28 (223)
++.+|+-..||||. +-|+--+..+.+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~ 34 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYP 34 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcC
Confidence 57788999999998 333333333444
No 238
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=29.72 E-value=1.7e+02 Score=19.25 Aligned_cols=58 Identities=12% Similarity=0.025 Sum_probs=30.8
Q ss_pred EEeccCCChhHHHHHHHHHHh---CCCceeeecCCCCCc--hHHHhhCCCCCccceEe--eCCeec
Q 027486 5 KLIGAWPSPYVYRVIWALQLK---GIKYEYVEENLSNKS--DMLLKYNPVHQKVPVLV--HDEKPI 63 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~~---gi~~~~~~v~~~~~~--~~~~~~~p~~~~vP~L~--~~g~~l 63 (223)
..|+.++|+.|+...=.+... --.+.+..++.+... ..+...... ..+|++. .+|..+
T Consensus 20 v~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 20 LEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 345778899998654444321 113445556654322 234333333 4699887 466543
No 239
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=28.63 E-value=84 Score=23.18 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=21.6
Q ss_pred eEEeccCCChhHHH----HHHHHHHhCCCceeeecC
Q 027486 4 VKLIGAWPSPYVYR----VIWALQLKGIKYEYVEEN 35 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~----vr~~l~~~gi~~~~~~v~ 35 (223)
+++|+...||||.. ++-+....++.++.+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 46889999999984 344444556666666653
No 240
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=28.42 E-value=98 Score=20.88 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=24.2
Q ss_pred EEeccCCChhHHHHHHHHHHhCCCceeee
Q 027486 5 KLIGAWPSPYVYRVIWALQLKGIKYEYVE 33 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l~~~gi~~~~~~ 33 (223)
.|...+..|...-++.+++++|||+++..
T Consensus 59 vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 59 VLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred EEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 45566778899999999999999998874
No 241
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=27.52 E-value=23 Score=24.97 Aligned_cols=52 Identities=12% Similarity=0.081 Sum_probs=25.5
Q ss_pred eEEeccCCChhHH----HHHHHHHHh-CCCceeeecCCC-CCchHHHhhCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVY----RVIWALQLK-GIKYEYVEENLS-NKSDMLLKYNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~----~vr~~l~~~-gi~~~~~~v~~~-~~~~~~~~~~p~~~~vP~L~ 57 (223)
+.++.-++||-|+ .+.-+++.. +|+++.+..+-. +..+.|+. +-. ..||+++
T Consensus 45 ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~-~~IP~~I 102 (129)
T PF14595_consen 45 ILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGG-RSIPTFI 102 (129)
T ss_dssp EEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS---SSEEE
T ss_pred EEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCC-eecCEEE
Confidence 4567889999988 344555555 666666644311 11233333 443 5799998
No 242
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=26.75 E-value=68 Score=25.13 Aligned_cols=22 Identities=5% Similarity=0.048 Sum_probs=17.5
Q ss_pred eEEeccCCChhHHHHHHHHHHh
Q 027486 4 VKLIGAWPSPYVYRVIWALQLK 25 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~ 25 (223)
+.+|+-+.||||++..--+...
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~~ 132 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKDY 132 (232)
T ss_pred EEEEECCCChHHHHHHHHHHHH
Confidence 5688999999999987666543
No 243
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=26.63 E-value=3.7e+02 Score=22.88 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=42.2
Q ss_pred eEEeccCCChhHHHHHHHHH-----Hh--CCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCee-------ccchH
Q 027486 4 VKLIGAWPSPYVYRVIWALQ-----LK--GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKP-------IVEST 67 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~-----~~--gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~-------l~eS~ 67 (223)
+.+++.++|+.|++..=.+. +. +-++....|+.... ..+...... ..+|++. .+|.. ..+..
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHH
Confidence 45678899999997642221 22 32366666665543 333332332 4689886 44443 13456
Q ss_pred HHHHHHHhhCC
Q 027486 68 VILEYIEEAWP 78 (223)
Q Consensus 68 ~I~~yL~~~~~ 78 (223)
.|.+++.+..+
T Consensus 100 ~l~~~i~~~~~ 110 (462)
T TIGR01130 100 GIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHhcC
Confidence 78888877653
No 244
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=25.77 E-value=2.3e+02 Score=22.57 Aligned_cols=33 Identities=9% Similarity=-0.166 Sum_probs=25.4
Q ss_pred eEEeccCCChhHH----HHHHHHHHhCCCceeeecCC
Q 027486 4 VKLIGAWPSPYVY----RVIWALQLKGIKYEYVEENL 36 (223)
Q Consensus 4 ~~Ly~~~~sp~~~----~vr~~l~~~gi~~~~~~v~~ 36 (223)
+.+++-..||||+ .++.+....|+++-.+.+|.
T Consensus 147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG 183 (248)
T PRK13703 147 LMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDG 183 (248)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 4466778899998 57777788899888777764
No 245
>PRK13949 shikimate kinase; Provisional
Probab=25.03 E-value=1e+02 Score=22.64 Aligned_cols=32 Identities=13% Similarity=0.043 Sum_probs=27.3
Q ss_pred CCceEEeccCCChhHHHHHHHHHHhCCCceee
Q 027486 1 MEQVKLIGAWPSPYVYRVIWALQLKGIKYEYV 32 (223)
Q Consensus 1 M~~~~Ly~~~~sp~~~~vr~~l~~~gi~~~~~ 32 (223)
|.++.|.+.++|+-+.-.+++.+..|+++-..
T Consensus 1 m~~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 66788999999999999999999999775443
No 246
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=24.52 E-value=2e+02 Score=18.40 Aligned_cols=51 Identities=6% Similarity=-0.149 Sum_probs=28.1
Q ss_pred EEeccCCChhHHHHHHHH----HHhCCCceeeecCCCCCchHHHhhCCCCCccceEe
Q 027486 5 KLIGAWPSPYVYRVIWAL----QLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV 57 (223)
Q Consensus 5 ~Ly~~~~sp~~~~vr~~l----~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~ 57 (223)
.+++.++|+.|+...-.+ +...-.+....++......-....+. ..+|++.
T Consensus 23 v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i--~~~P~~~ 77 (103)
T cd03001 23 VEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV--RGFPTIK 77 (103)
T ss_pred EEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC--CccCEEE
Confidence 456788999998664322 22222345555555443333344555 3599886
No 247
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.06 E-value=78 Score=25.14 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=17.5
Q ss_pred ceEEeccCCChhHHHHHHHHH
Q 027486 3 QVKLIGAWPSPYVYRVIWALQ 23 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~~vr~~l~ 23 (223)
+.+||+.|+||+..--.++.+
T Consensus 155 kpTLyylPHcp~~LyeNiL~s 175 (281)
T KOG3131|consen 155 KPTLYYLPHCPYALYENILWS 175 (281)
T ss_pred ceeeEecCCCchHHHHHHHHH
Confidence 579999999999887766665
No 248
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=23.28 E-value=90 Score=18.89 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=15.4
Q ss_pred ceEEecc----CCChhHHHHHHHHHH
Q 027486 3 QVKLIGA----WPSPYVYRVIWALQL 24 (223)
Q Consensus 3 ~~~Ly~~----~~sp~~~~vr~~l~~ 24 (223)
+++||.+ ..|.||+||-..|..
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 3778754 456789999877653
No 249
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=23.26 E-value=3.7e+02 Score=21.01 Aligned_cols=73 Identities=10% Similarity=-0.039 Sum_probs=40.2
Q ss_pred eEEeccCCChhHHHHHHHHHHh----CCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCeec------cchHHHHH
Q 027486 4 VKLIGAWPSPYVYRVIWALQLK----GIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKPI------VESTVILE 71 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~l------~eS~~I~~ 71 (223)
+..++.++|+.|+...=.+... +-.+....+|.... +.+.+.... ..+|++. .+|..+ .....|.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~~ 133 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-LNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLAA 133 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-HHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHHH
Confidence 3466889999998654433221 21244445554432 333333333 5699887 566443 23456677
Q ss_pred HHHhhCC
Q 027486 72 YIEEAWP 78 (223)
Q Consensus 72 yL~~~~~ 78 (223)
++.+.+.
T Consensus 134 fi~~~~~ 140 (224)
T PTZ00443 134 FALGDFK 140 (224)
T ss_pred HHHHHHH
Confidence 7766653
No 250
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=22.49 E-value=1.5e+02 Score=20.54 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=26.0
Q ss_pred ccCCChhHHHHHHHHH-----HhCCCceeeecCCCCCc--hHHHhhCCCCCccceEeeCCe
Q 027486 8 GAWPSPYVYRVIWALQ-----LKGIKYEYVEENLSNKS--DMLLKYNPVHQKVPVLVHDEK 61 (223)
Q Consensus 8 ~~~~sp~~~~vr~~l~-----~~gi~~~~~~v~~~~~~--~~~~~~~p~~~~vP~L~~~g~ 61 (223)
...+||.|+.---.|. ..+-.++.+.|+.+... ..|.+... -..|++.|.+.
T Consensus 32 ~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~--~~~p~~~D~~~ 90 (149)
T cd02970 32 RGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF--LPFPVYADPDR 90 (149)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC--CCCeEEECCch
Confidence 3568999985322222 22234555655544221 22444443 25787776543
No 251
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.41 E-value=1.3e+02 Score=22.22 Aligned_cols=31 Identities=13% Similarity=-0.029 Sum_probs=20.4
Q ss_pred ceEEeccCCChhHH----HHHHHHHHh--CCCceeee
Q 027486 3 QVKLIGAWPSPYVY----RVIWALQLK--GIKYEYVE 33 (223)
Q Consensus 3 ~~~Ly~~~~sp~~~----~vr~~l~~~--gi~~~~~~ 33 (223)
++.+|..+.||||. +++-+.+.. +++++.+.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~ 38 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHL 38 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEe
Confidence 37899999999998 444444444 55555543
No 252
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=22.15 E-value=1.5e+02 Score=18.90 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHhh
Q 027486 153 DLVFGWIAKSFGVVEEVVGVKVLDADSFPRLHAWIGSFR 191 (223)
Q Consensus 153 D~~~~~~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~ 191 (223)
|+..|+++.++... +.+-. .++--++..|.+++.
T Consensus 43 DvL~~~ll~~L~~~----~r~~~-k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 43 DVLTFCLLERLSNP----GRSRL-KDDGTNISQWLQSLA 76 (77)
T ss_pred HHHHHHHHHHHhcc----cchhc-CcCCCCHHHHHHHHh
Confidence 99999988888522 22223 235588999999875
No 253
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.04 E-value=92 Score=23.22 Aligned_cols=31 Identities=19% Similarity=0.287 Sum_probs=19.8
Q ss_pred eEEeccCCChhHH----HHHHHHHHh----CCCceeeec
Q 027486 4 VKLIGAWPSPYVY----RVIWALQLK----GIKYEYVEE 34 (223)
Q Consensus 4 ~~Ly~~~~sp~~~----~vr~~l~~~----gi~~~~~~v 34 (223)
+.+|+...||||. +++-++... ++.++.+++
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 4688999999998 444444444 455555554
No 254
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.30 E-value=73 Score=27.83 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=50.5
Q ss_pred CCChhHHHHHHHHHHh--CCC-ceeeecC--CCCCchHHHhh---CC-CCCccceEe----e-C--CeeccchHHHHHHH
Q 027486 10 WPSPYVYRVIWALQLK--GIK-YEYVEEN--LSNKSDMLLKY---NP-VHQKVPVLV----H-D--EKPIVESTVILEYI 73 (223)
Q Consensus 10 ~~sp~~~~vr~~l~~~--gi~-~~~~~v~--~~~~~~~~~~~---~p-~~~~vP~L~----~-~--g~~l~eS~~I~~yL 73 (223)
..|||-.|+-+++.+. ++| |.++.|. ++.+.+|+.++ |- .+++-|++. + + |.-|.+...-++|.
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~~ 81 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEYA 81 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHHH
Confidence 4699999999999987 565 8888764 33555555543 21 125789885 3 2 46788899899998
Q ss_pred HhhCCCCC
Q 027486 74 EEAWPRHP 81 (223)
Q Consensus 74 ~~~~~~~~ 81 (223)
..-|+-.+
T Consensus 82 ~~yyg~~s 89 (452)
T cd05295 82 ESYYGITS 89 (452)
T ss_pred HHHhCccc
Confidence 88887443
No 255
>PLN02309 5'-adenylylsulfate reductase
Probab=21.14 E-value=2.8e+02 Score=24.42 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=30.7
Q ss_pred eEEeccCCChhHHHHHHHHH-----HhCCCceeeecCCCCCchHHHh--hCCCCCccceEe
Q 027486 4 VKLIGAWPSPYVYRVIWALQ-----LKGIKYEYVEENLSNKSDMLLK--YNPVHQKVPVLV 57 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~vr~~l~-----~~gi~~~~~~v~~~~~~~~~~~--~~p~~~~vP~L~ 57 (223)
+..|+.++|+.|+.+.-.+. +.+-.+.+..++.+.....+.. .+- ..+|++.
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I--~~~PTil 427 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL--GSFPTIL 427 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC--ceeeEEE
Confidence 45789999999986553332 2244466666665522233332 333 5789997
No 256
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=20.92 E-value=1.4e+02 Score=16.06 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=19.1
Q ss_pred CccceEeeCCeeccchHHHHHHHH
Q 027486 51 QKVPVLVHDEKPIVESTVILEYIE 74 (223)
Q Consensus 51 ~~vP~L~~~g~~l~eS~~I~~yL~ 74 (223)
|.+|....++..++....|.+|+.
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHh
Confidence 678887777788888888888875
No 257
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=20.51 E-value=4.2e+02 Score=23.56 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=44.5
Q ss_pred eEEeccCCChhHHHH-------HHHHHHhCCCceeeecCCCCCchHHHhhCCCCCccceEe--eCCee------ccchHH
Q 027486 4 VKLIGAWPSPYVYRV-------IWALQLKGIKYEYVEENLSNKSDMLLKYNPVHQKVPVLV--HDEKP------IVESTV 68 (223)
Q Consensus 4 ~~Ly~~~~sp~~~~v-------r~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~~~vP~L~--~~g~~------l~eS~~ 68 (223)
+.-||-|+|..|.+. --.|...|=+.....||.....+.-.+..= .-.|+|. .+|.. ..+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v--~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEV--RGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcC--CCCCeEEEEecCCcceeccCcccHHH
Confidence 356788888888732 333444444788888876532222122222 2378886 46653 356778
Q ss_pred HHHHHHhhCC
Q 027486 69 ILEYIEEAWP 78 (223)
Q Consensus 69 I~~yL~~~~~ 78 (223)
|+.||-++.+
T Consensus 124 Iv~wl~kq~g 133 (493)
T KOG0190|consen 124 IVKWLKKQSG 133 (493)
T ss_pred HHHHHHhccC
Confidence 9999988864
Done!