Query 027487
Match_columns 223
No_of_seqs 112 out of 333
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 10:39:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027487.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027487hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3077 Uncharacterized conser 100.0 1.5E-63 3.3E-68 437.9 18.6 195 24-222 55-252 (260)
2 PF03556 Cullin_binding: Culli 100.0 2.8E-45 6E-50 290.4 9.3 116 101-219 1-117 (117)
3 cd00051 EFh EF-hand, calcium b 93.2 0.58 1.3E-05 29.8 6.7 59 35-93 2-62 (63)
4 PF13833 EF-hand_8: EF-hand do 93.0 0.23 5E-06 32.9 4.5 50 46-95 3-53 (54)
5 KOG3077 Uncharacterized conser 92.9 0.12 2.7E-06 46.4 4.0 87 119-210 78-164 (260)
6 PTZ00183 centrin; Provisional 91.9 2.9 6.4E-05 32.6 10.4 66 30-95 14-81 (158)
7 PTZ00183 centrin; Provisional 91.7 1.1 2.3E-05 35.2 7.7 80 31-111 51-135 (158)
8 cd05031 S-100A10_like S-100A10 91.1 0.73 1.6E-05 34.3 5.8 67 32-98 7-82 (94)
9 cd00052 EH Eps15 homology doma 90.4 1 2.2E-05 30.3 5.6 60 36-97 2-63 (67)
10 cd05029 S-100A6 S-100A6: S-100 89.9 1.5 3.2E-05 32.7 6.5 64 33-96 10-80 (88)
11 smart00027 EH Eps15 homology d 89.7 1 2.2E-05 33.6 5.5 65 30-96 7-73 (96)
12 PTZ00184 calmodulin; Provision 89.4 8 0.00017 29.6 14.2 64 32-95 10-75 (149)
13 KOG0028 Ca2+-binding protein ( 88.1 4.5 9.9E-05 34.2 8.8 103 30-132 30-136 (172)
14 cd05030 calgranulins Calgranul 87.6 2.1 4.5E-05 31.7 6.0 64 33-96 8-80 (88)
15 PF13499 EF-hand_7: EF-hand do 87.4 2 4.3E-05 29.2 5.4 60 34-93 1-66 (66)
16 PTZ00184 calmodulin; Provision 86.8 3.1 6.7E-05 31.9 6.8 97 31-127 45-145 (149)
17 KOG0036 Predicted mitochondria 83.4 3.3 7.2E-05 39.8 6.4 78 34-114 83-162 (463)
18 cd00213 S-100 S-100: S-100 dom 83.0 5.9 0.00013 28.6 6.5 64 33-96 8-80 (88)
19 KOG0027 Calmodulin and related 82.7 13 0.00027 29.8 8.8 69 30-98 5-75 (151)
20 COG5126 FRQ1 Ca2+-binding prot 80.4 16 0.00034 30.7 8.8 87 27-114 11-104 (160)
21 PF09279 EF-hand_like: Phospho 79.7 3.3 7.2E-05 29.8 4.1 62 34-95 1-69 (83)
22 TIGR01446 DnaD_dom DnaD and ph 78.7 3.6 7.8E-05 29.0 3.9 65 38-105 4-72 (73)
23 COG5126 FRQ1 Ca2+-binding prot 78.3 8.8 0.00019 32.2 6.6 68 28-95 87-156 (160)
24 cd05025 S-100A1 S-100A1: S-100 77.2 15 0.00032 27.0 7.0 65 32-96 8-81 (92)
25 cd05027 S-100B S-100B: S-100B 75.2 15 0.00033 27.2 6.7 64 33-96 8-80 (88)
26 cd05022 S-100A13 S-100A13: S-1 75.2 16 0.00035 27.3 6.8 64 33-96 8-76 (89)
27 PF13833 EF-hand_8: EF-hand do 74.3 7.1 0.00015 25.5 4.2 47 81-127 2-50 (54)
28 cd05023 S-100A11 S-100A11: S-1 72.1 21 0.00045 26.6 6.7 65 33-97 9-82 (89)
29 PF05517 p25-alpha: p25-alpha 70.6 12 0.00025 30.9 5.5 96 35-130 1-123 (154)
30 PF00036 EF-hand_1: EF hand; 69.6 3.6 7.9E-05 24.5 1.7 18 79-96 12-29 (29)
31 cd05026 S-100Z S-100Z: S-100Z 68.7 31 0.00068 25.6 7.1 64 34-97 11-83 (93)
32 KOG0027 Calmodulin and related 67.3 29 0.00063 27.7 7.1 70 29-98 40-116 (151)
33 PF14658 EF-hand_9: EF-hand do 64.5 23 0.00051 25.4 5.3 50 46-95 13-64 (66)
34 PRK07571 bidirectional hydroge 59.0 23 0.00051 29.8 5.3 110 12-132 2-139 (169)
35 PLN02223 phosphoinositide phos 58.8 22 0.00048 35.3 5.8 69 27-95 10-92 (537)
36 PLN02964 phosphatidylserine de 57.6 50 0.0011 33.6 8.2 78 33-114 143-227 (644)
37 PF12763 EF-hand_4: Cytoskelet 54.1 27 0.00058 27.0 4.5 65 29-96 6-72 (104)
38 smart00027 EH Eps15 homology d 53.4 28 0.00062 25.6 4.5 69 62-131 4-73 (96)
39 PF13405 EF-hand_6: EF-hand do 52.6 16 0.00036 21.3 2.5 27 35-61 2-31 (31)
40 PF05042 Caleosin: Caleosin re 51.8 73 0.0016 27.2 7.1 63 26-88 89-159 (174)
41 cd00052 EH Eps15 homology doma 50.9 40 0.00087 22.2 4.6 31 77-108 9-39 (67)
42 cd03567 VHS_GGA VHS domain fam 49.2 1.3E+02 0.0029 24.3 8.1 92 35-126 2-129 (139)
43 KOG0036 Predicted mitochondria 46.8 1.3E+02 0.0028 29.3 8.6 90 27-116 8-116 (463)
44 PLN02228 Phosphoinositide phos 45.7 85 0.0018 31.5 7.6 67 29-95 20-92 (567)
45 PF13499 EF-hand_7: EF-hand do 43.6 81 0.0018 21.0 5.2 41 75-115 8-49 (66)
46 PLN02230 phosphoinositide phos 42.7 68 0.0015 32.4 6.4 69 27-95 23-102 (598)
47 KOG0030 Myosin essential light 42.1 1.1E+02 0.0023 25.6 6.4 65 31-95 9-77 (152)
48 KOG2643 Ca2+ binding protein, 41.5 94 0.002 30.4 6.8 83 46-132 301-389 (489)
49 PF01314 AFOR_C: Aldehyde ferr 40.6 14 0.00031 34.6 1.3 36 53-89 116-151 (382)
50 cd00252 SPARC_EC SPARC_EC; ext 40.5 1.6E+02 0.0034 23.1 7.0 61 29-93 44-106 (116)
51 PLN02222 phosphoinositide phos 39.8 70 0.0015 32.2 6.0 66 29-95 21-90 (581)
52 KOG0028 Ca2+-binding protein ( 39.5 1.5E+02 0.0032 25.2 7.0 67 29-95 102-170 (172)
53 PF11116 DUF2624: Protein of u 37.3 1.7E+02 0.0038 22.1 6.4 53 46-98 13-65 (85)
54 PRK10391 oriC-binding nucleoid 36.8 68 0.0015 23.5 4.0 39 85-125 2-40 (71)
55 smart00862 Trans_reg_C Transcr 35.5 92 0.002 21.2 4.6 53 64-117 6-60 (78)
56 KOG0037 Ca2+-binding protein, 33.9 3.2E+02 0.0068 24.3 8.4 66 31-96 55-123 (221)
57 PHA01083 hypothetical protein 33.7 58 0.0012 27.2 3.6 52 47-102 43-97 (149)
58 PF13443 HTH_26: Cro/C1-type H 33.1 25 0.00054 23.6 1.2 36 30-67 22-57 (63)
59 PF07261 DnaB_2: Replication i 30.5 6.2 0.00013 27.7 -2.3 60 48-108 16-75 (77)
60 PF00486 Trans_reg_C: Transcri 30.0 1.2E+02 0.0025 20.7 4.3 50 67-117 9-59 (77)
61 COG0177 Nth Predicted EndoIII- 29.9 53 0.0011 28.8 3.0 39 25-63 41-82 (211)
62 KOG0034 Ca2+/calmodulin-depend 29.8 2.9E+02 0.0062 23.6 7.4 136 29-187 26-173 (187)
63 cd05022 S-100A13 S-100A13: S-1 29.4 1.3E+02 0.0029 22.3 4.8 68 67-134 7-79 (89)
64 PLN02952 phosphoinositide phos 29.3 1.6E+02 0.0035 29.7 6.6 67 29-95 34-110 (599)
65 PF07864 DUF1651: Protein of u 29.2 35 0.00076 24.5 1.5 22 138-159 47-68 (75)
66 PF07531 TAFH: NHR1 homology t 29.0 63 0.0014 25.0 2.9 64 52-121 12-83 (96)
67 TIGR01565 homeo_ZF_HD homeobox 28.8 1.2E+02 0.0026 21.1 4.1 37 31-67 12-49 (58)
68 PF00046 Homeobox: Homeobox do 28.7 60 0.0013 21.3 2.5 36 31-69 11-46 (57)
69 CHL00137 rps13 ribosomal prote 27.9 2.5E+02 0.0054 22.3 6.3 56 47-115 24-81 (122)
70 PF12174 RST: RCD1-SRO-TAF4 (R 27.8 40 0.00086 24.4 1.6 16 81-96 39-54 (70)
71 cd00383 trans_reg_C Effector d 26.3 1.4E+02 0.003 21.2 4.3 55 62-117 22-77 (95)
72 cd05031 S-100A10_like S-100A10 26.1 1.3E+02 0.0028 22.0 4.1 31 81-111 24-60 (94)
73 PF08671 SinI: Anti-repressor 25.8 76 0.0017 19.3 2.3 27 164-191 4-30 (30)
74 COG3710 CadC DNA-binding winge 25.4 92 0.002 25.4 3.5 70 61-132 29-103 (148)
75 PF06535 RGM_N: Repulsive guid 24.2 22 0.00047 30.0 -0.4 15 197-212 116-130 (161)
76 PRK09849 putative oxidoreducta 24.1 1E+02 0.0022 31.7 4.3 30 55-86 371-400 (702)
77 smart00054 EFh EF-hand, calciu 24.0 1.1E+02 0.0024 15.4 2.7 18 78-95 11-28 (29)
78 KOG2873 Ubiquinol cytochrome c 23.6 1.8E+02 0.0039 26.6 5.3 49 121-172 201-252 (284)
79 cd04752 Commd4 COMM_Domain con 23.5 3.2E+02 0.0069 22.7 6.5 73 37-110 12-88 (174)
80 PLN02964 phosphatidylserine de 23.2 2.9E+02 0.0063 28.2 7.2 61 35-95 181-243 (644)
81 PRK10945 gene expression modul 23.1 1.3E+02 0.0028 22.1 3.5 38 85-125 7-44 (72)
82 PF13348 Y_phosphatase3C: Tyro 23.1 36 0.00078 23.5 0.6 37 31-71 27-64 (68)
83 KOG3911 Nucleolar protein NOP5 23.1 5.9E+02 0.013 24.2 8.6 119 67-191 26-197 (378)
84 smart00530 HTH_XRE Helix-turn- 23.0 1.3E+02 0.0029 17.6 3.3 27 40-66 28-55 (56)
85 PF04659 Arch_fla_DE: Archaeal 22.9 1.4E+02 0.0031 23.0 4.0 53 162-215 21-86 (99)
86 KOG0041 Predicted Ca2+-binding 22.6 2.5E+02 0.0055 24.9 5.8 59 36-94 102-162 (244)
87 PF07647 SAM_2: SAM domain (St 22.5 2E+02 0.0043 19.2 4.3 58 49-112 5-63 (66)
88 COG4976 Predicted methyltransf 22.3 62 0.0014 29.4 2.1 63 21-100 73-136 (287)
89 PF14788 EF-hand_10: EF hand; 22.2 2.4E+02 0.0052 19.3 4.5 47 49-95 3-49 (51)
90 PF04337 DUF480: Protein of un 21.8 98 0.0021 25.8 3.0 56 54-114 78-134 (148)
91 PF13624 SurA_N_3: SurA N-term 21.2 97 0.0021 24.3 2.9 60 48-108 84-144 (154)
92 PRK08561 rps15p 30S ribosomal 21.1 3.4E+02 0.0074 22.7 6.0 15 1-15 1-15 (151)
93 PF14490 HHH_4: Helix-hairpin- 20.8 2E+02 0.0043 21.3 4.3 41 30-70 20-76 (94)
94 PF00416 Ribosomal_S13: Riboso 20.7 3.9E+02 0.0084 20.4 6.5 78 47-140 22-101 (107)
95 smart00368 LRR_RI Leucine rich 20.7 93 0.002 18.0 2.0 16 46-61 12-27 (28)
96 PF09712 PHA_synth_III_E: Poly 20.7 2.7E+02 0.0058 25.3 5.9 38 49-87 114-159 (293)
97 PRK05988 formate dehydrogenase 20.7 1.9E+02 0.0042 23.8 4.6 91 32-132 8-126 (156)
98 cd03568 VHS_STAM VHS domain fa 20.5 4.6E+02 0.01 21.1 7.4 34 82-115 74-108 (144)
99 PRK05179 rpsM 30S ribosomal pr 20.4 3.8E+02 0.0083 21.3 6.1 56 47-115 24-81 (122)
No 1
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-63 Score=437.94 Aligned_cols=195 Identities=33% Similarity=0.686 Sum_probs=185.2
Q ss_pred ccCCCcccHHHHHHHHHhhcCC---CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCCCC
Q 027487 24 ARSAGKAKAKEIENFFDKYANG---GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVNN 100 (223)
Q Consensus 24 ~~~~~~~~~~~l~~lFd~Y~~~---~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~ds 100 (223)
++.....+.+.+.++|.+|+++ +.|++|||.+||+||||+|+|+++|||||+|+|++||+|||++|+.||.+++|||
T Consensus 55 ~~~~~~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS 134 (260)
T KOG3077|consen 55 ESVQARVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDS 134 (260)
T ss_pred hhhhccccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCc
Confidence 3445568889999999999998 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHhHhhhccCccccccccHHHHHHHHHHhhCCCchhhHHHHHHHHHhcCCCccCCh
Q 027487 101 LSKLKKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVINL 180 (223)
Q Consensus 101 i~~lk~~l~~l~~~l~~~~~Fk~~Y~f~F~f~k~~~~qK~L~le~Ai~~W~lll~~~~~~~l~~w~~FL~~~~~~k~Isk 180 (223)
+++|++.|+.++..++|.+.|+.+|+|||+|+++ +|||+|++++||+||.+||+.+++ .+++|++||+.+ +++.|+|
T Consensus 135 ~d~lq~~l~~l~~~l~d~~~Fk~iY~faf~fa~e-~~qk~Ld~~~ai~~w~ll~~~~~p-ll~~w~~FL~~~-~~~~~~K 211 (260)
T KOG3077|consen 135 IDKLQQRLDFLRSVLKDLEKFKSIYRFAFNFAKE-PGQKSLDLETAISLWKLLFGQTPP-LLDQWIQFLKDS-PNRAISK 211 (260)
T ss_pred HHHHHHHHHHHHHHHccHHHhhHHHHhhhhhccC-cCcCcCCHHHHHHHHHHHhCCCCc-hHHHHHHHHHhC-cCcccCc
Confidence 9999999999999999999999999999999995 799999999999999999988885 899999999875 6789999
Q ss_pred hhhhHHHHHhhhcCCCCCCCCCCCCCchhhHHHHHHHHHhhC
Q 027487 181 DQWLGIFRFCNEISFPDLENYDETQAWPLILDNFVDWLRENH 222 (223)
Q Consensus 181 D~W~~~l~F~~~v~~~dls~YDe~~AWP~lIDeFVe~~r~~~ 222 (223)
|||||+|+|++++. +|+|||||+||||+||||||||+|+++
T Consensus 212 DtW~~~l~Fs~~i~-~dlSnYDeegAWP~liDeFVe~~r~~~ 252 (260)
T KOG3077|consen 212 DTWNLLLDFSKTID-PDLSNYDEEGAWPVLIDEFVEYLRDKQ 252 (260)
T ss_pred ccHHHHHHHHHhcC-ccccCccccccchHHHHHHHHHHHHhc
Confidence 99999999999986 999999999999999999999999875
No 2
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=100.00 E-value=2.8e-45 Score=290.35 Aligned_cols=116 Identities=37% Similarity=0.740 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHhC-CCchhHHHHHhHhhhccCccccccccHHHHHHHHHHhhCCCchhhHHHHHHHHHhcCCCccCC
Q 027487 101 LSKLKKAISELEKEVR-TPPNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVIN 179 (223)
Q Consensus 101 i~~lk~~l~~l~~~l~-~~~~Fk~~Y~f~F~f~k~~~~qK~L~le~Ai~~W~lll~~~~~~~l~~w~~FL~~~~~~k~Is 179 (223)
|++||++|++|+++|. |+++|++||+|||+|+|+ +|||+|++|+||+||++||+++..++++.|++||+++ ++|+||
T Consensus 1 I~~lk~~l~~l~~~l~~d~~~F~~~Y~f~F~~~~~-~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~-~~k~Is 78 (117)
T PF03556_consen 1 IDKLKQKLPELRKELRSDPEYFKKFYRFTFDFARE-EGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEK-YKKAIS 78 (117)
T ss_dssp HHHHHHCHHHHHHHCCHSHHHHHHHHHHHHHHHS--TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHC-T-SEEE
T ss_pred CHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhCC-cccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc-CCcCcC
Confidence 6899999999999997 889999999999999996 6899999999999999999988446999999999875 689999
Q ss_pred hhhhhHHHHHhhhcCCCCCCCCCCCCCchhhHHHHHHHHH
Q 027487 180 LDQWLGIFRFCNEISFPDLENYDETQAWPLILDNFVDWLR 219 (223)
Q Consensus 180 kD~W~~~l~F~~~v~~~dls~YDe~~AWP~lIDeFVe~~r 219 (223)
||+|+|+++|+++++ +++++|||+||||+||||||||+|
T Consensus 79 kD~W~~~l~F~~~~~-~dls~Yde~~AWP~liDeFVe~~r 117 (117)
T PF03556_consen 79 KDTWNQFLDFFKTVD-EDLSNYDEEGAWPSLIDEFVEWLR 117 (117)
T ss_dssp HHHHHHHHHHHHH-H-CCHCC--TTSSS-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcC-ccccCCCCCCCCcHHHHHHHHHhC
Confidence 999999999999996 999999999999999999999997
No 3
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=93.20 E-value=0.58 Score=29.76 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=48.8
Q ss_pred HHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHh
Q 027487 35 IENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGL 93 (223)
Q Consensus 35 l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~ 93 (223)
+..+|..|..+ +.|+.+-+...+..+|..+.+..+-.+..++....-|.++-++|+..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 56788888654 689999999999999988887777778888887778999999998654
No 4
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=92.95 E-value=0.23 Score=32.85 Aligned_cols=50 Identities=16% Similarity=0.238 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHcCCC-CCCHHHHHHHHhhcccccccccHHHHHHHhhH
Q 027487 46 GIIDPDGIVTLCKDLELE-YTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 46 ~~I~~dG~~~~~~dLgv~-ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~ 95 (223)
+.|+.+.+.+.+..+|+. +.+-.+=.|...+-...-|.|+.+||+..|+.
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 568889999999888999 88888889999999999999999999998875
No 5
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.91 E-value=0.12 Score=46.36 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=64.6
Q ss_pred chhHHHHHhHhhhccCccccccccHHHHHHHHHHhhCCCchhhHHHHHHHHHhcCCCccCChhhhhHHHHHhhhcCCCCC
Q 027487 119 PNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFRRQVDLLIDYLKVQSNYKVINLDQWLGIFRFCNEISFPDL 198 (223)
Q Consensus 119 ~~Fk~~Y~f~F~f~k~~~~qK~L~le~Ai~~W~lll~~~~~~~l~~w~~FL~~~~~~k~IskD~W~~~l~F~~~v~~~dl 198 (223)
..+.-.|...+.|+.+ -|+...++.++|-.|.+. .+++. .+..|+ |+..-+.-..+|-|+|++.++|.+++- .|+
T Consensus 78 d~~~i~~dgi~~fc~d-lg~~p~~i~~LvlAwkl~-A~~m~-~Fsr~e-f~~g~~~l~~dS~d~lq~~l~~l~~~l-~d~ 152 (260)
T KOG3077|consen 78 DDNLIGPDGIEKFCED-LGVEPEDISVLVLAWKLG-AATMC-EFSREE-FLKGMTALGCDSIDKLQQRLDFLRSVL-KDL 152 (260)
T ss_pred cccccChHHHHHHHHH-hCCCchhHHHHHHHHHhc-cchhh-hhhHHH-HHHHHHHcCCCcHHHHHHHHHHHHHHH-ccH
Confidence 3388899999999975 689999999999999998 66653 233332 332212346899999999999999875 588
Q ss_pred CCCCCCCCchhh
Q 027487 199 ENYDETQAWPLI 210 (223)
Q Consensus 199 s~YDe~~AWP~l 210 (223)
+.|++-.+||..
T Consensus 153 ~~Fk~iY~faf~ 164 (260)
T KOG3077|consen 153 EKFKSIYRFAFN 164 (260)
T ss_pred HHhhHHHHhhhh
Confidence 877766555543
No 6
>PTZ00183 centrin; Provisional
Probab=91.85 E-value=2.9 Score=32.65 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=52.5
Q ss_pred ccHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhH
Q 027487 30 AKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 30 ~~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~ 95 (223)
..-+++..+|..+-.+ +.|+.+-+..++..+|..+....+-.+.-.+....-|.|+.++|+..+..
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 3446688889887533 78999999999999998877666666666677777899999999998765
No 7
>PTZ00183 centrin; Provisional
Probab=91.71 E-value=1.1 Score=35.19 Aligned_cols=80 Identities=19% Similarity=0.182 Sum_probs=43.2
Q ss_pred cHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcC--CCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCC-CCHHHHH
Q 027487 31 KAKEIENFFDKYANG--GIIDPDGIVTLCKDLE--LEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQV-NNLSKLK 105 (223)
Q Consensus 31 ~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLg--v~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~-dsi~~lk 105 (223)
....+.++|..+-.+ +.|+.+..+.++...- ..+++ .+--+...+....-|.+++++|...+..+|. -+-+.++
T Consensus 51 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~-~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~ 129 (158)
T PTZ00183 51 KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPRE-EILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQ 129 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHH-HHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH
Confidence 345677777776433 5677777766655431 11221 1112223344445577888888888777663 2344455
Q ss_pred HHHHHH
Q 027487 106 KAISEL 111 (223)
Q Consensus 106 ~~l~~l 111 (223)
..+..+
T Consensus 130 ~~~~~~ 135 (158)
T PTZ00183 130 EMIDEA 135 (158)
T ss_pred HHHHHh
Confidence 555444
No 8
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=91.09 E-value=0.73 Score=34.28 Aligned_cols=67 Identities=13% Similarity=0.197 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhcC---C-CCCCHHHHHHHHHH-----cCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCC
Q 027487 32 AKEIENFFDKYAN---G-GIIDPDGIVTLCKD-----LELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQV 98 (223)
Q Consensus 32 ~~~l~~lFd~Y~~---~-~~I~~dG~~~~~~d-----Lgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~ 98 (223)
-..|...|..|-+ + +.|+.+-+..++.. +|..+....+--+...+....-|.|+.++|+..|..+++
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 4567889999954 2 68999999998886 677877666666666778888899999999999987655
No 9
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=90.36 E-value=1 Score=30.30 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=44.3
Q ss_pred HHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcC
Q 027487 36 ENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ 97 (223)
Q Consensus 36 ~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~ 97 (223)
.++|..+-.+ +.|+.+.+.+++..+|++.+.+.- +...+....-|.|+.++|+..|..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~--i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQ--IWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHH--HHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 3578887433 789999999999999984444333 34456667779999999999987643
No 10
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=89.91 E-value=1.5 Score=32.74 Aligned_cols=64 Identities=20% Similarity=0.203 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHHH---cCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHc
Q 027487 33 KEIENFFDKYANG----GIIDPDGIVTLCKD---LELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 33 ~~l~~lFd~Y~~~----~~I~~dG~~~~~~d---Lgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l 96 (223)
..|.++|.+|... +.|+.+.+.+++.. +|..+.+-.+--+-..+....-|.|+-+||+.-|..+
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4577899999862 58999999999974 6877766666666667788888999999999887765
No 11
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=89.73 E-value=1 Score=33.59 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=49.5
Q ss_pred ccHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHc
Q 027487 30 AKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 30 ~~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l 96 (223)
.....+.+.|..+-.+ +.|+.+-+.+.+..+|++.+++.-+. -.+....-|.|+.++|+..|..+
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~--~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIW--NLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHH--HHhcCCCCCCcCHHHHHHHHHHH
Confidence 3456788889988544 78999999999999998766555433 23556667999999999988764
No 12
>PTZ00184 calmodulin; Provisional
Probab=89.44 E-value=8 Score=29.58 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhH
Q 027487 32 AKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 32 ~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~ 95 (223)
.+.+.+.|..+-.+ +.|+.+-+..++..+|.++.+..+-.+.-.+....-|.++.++|+..|..
T Consensus 10 ~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 75 (149)
T PTZ00184 10 IAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMAR 75 (149)
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHH
Confidence 45677788777333 78999999999999999988777777777788777899999999988875
No 13
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=88.12 E-value=4.5 Score=34.23 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=72.6
Q ss_pred ccHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhH-cC-CCCHHHHH
Q 027487 30 AKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT-LQ-VNNLSKLK 105 (223)
Q Consensus 30 ~~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~-l~-~dsi~~lk 105 (223)
....++..-|+-+-.. +.|+++++---.-.||.+|..-.++-|.--+....-|.|+-++|+.-|.. ++ -||.+.++
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 3445667677666544 89999999666778999999999998888888888899999999999866 33 46888888
Q ss_pred HHHHHHHHHhCCCchhHHHHHhHhhhc
Q 027487 106 KAISELEKEVRTPPNFADFYSFAFRYH 132 (223)
Q Consensus 106 ~~l~~l~~~l~~~~~Fk~~Y~f~F~f~ 132 (223)
..+...+..=.-.-.++.|=+-++.++
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhC
Confidence 877644333222223444444444443
No 14
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=87.61 E-value=2.1 Score=31.69 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHH-HcCCCCC----CHHHHHHHHhhcccccccccHHHHHHHhhHc
Q 027487 33 KEIENFFDKYANG----GIIDPDGIVTLCK-DLELEYT----DVRILMLAWKLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 33 ~~l~~lFd~Y~~~----~~I~~dG~~~~~~-dLgv~pe----d~~~L~La~~l~a~~mg~~tr~eF~~G~~~l 96 (223)
..|..+|.+|... +.|+.+-+..++. .+|-.+. +-.+=-+...+....-|.|+-++|+..+..+
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3567789999855 5899999999997 4443232 3444444555566777999999999998875
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=87.40 E-value=2 Score=29.20 Aligned_cols=60 Identities=18% Similarity=0.256 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCC--H--HHHHHHHhhcccccccccHHHHHHHh
Q 027487 34 EIENFFDKYANG--GIIDPDGIVTLCKDLELEYTD--V--RILMLAWKLKAVKLGYFTQDEWETGL 93 (223)
Q Consensus 34 ~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped--~--~~L~La~~l~a~~mg~~tr~eF~~G~ 93 (223)
+|.++|+.|=.+ +.|+.+-+.+++..++....+ + .+-.+...+-...-|.|+.+||++.|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 467788888544 788888888888888876422 1 11122333445556888888888654
No 16
>PTZ00184 calmodulin; Provisional
Probab=86.76 E-value=3.1 Score=31.93 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=56.1
Q ss_pred cHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcC-CCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCCC-CHHHHHH
Q 027487 31 KAKEIENFFDKYANG--GIIDPDGIVTLCKDLE-LEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVN-NLSKLKK 106 (223)
Q Consensus 31 ~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLg-v~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~d-si~~lk~ 106 (223)
....+.++|..+-.+ +.|+.+-.+.++...- .......+-.+...+....-|.+++++|...++.+|.. +-+.++.
T Consensus 45 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~ 124 (149)
T PTZ00184 45 TEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDE 124 (149)
T ss_pred CHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHH
Confidence 356788888887544 6788887776665432 12222222333334444556999999999999988764 4444555
Q ss_pred HHHHHHHHhCCCchhHHHHHh
Q 027487 107 AISELEKEVRTPPNFADFYSF 127 (223)
Q Consensus 107 ~l~~l~~~l~~~~~Fk~~Y~f 127 (223)
.+..+...-...-.|.+|+.+
T Consensus 125 ~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 125 MIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred HHHhcCCCCCCcCcHHHHHHH
Confidence 444432221222345555543
No 17
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=83.39 E-value=3.3 Score=39.83 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=56.5
Q ss_pred HHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCCCCHHHHHHHHHHH
Q 027487 34 EIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISEL 111 (223)
Q Consensus 34 ~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~dsi~~lk~~l~~l 111 (223)
+|-.+|.+..-+ +.|+++.|.++|.|+||++.|-..--+-..+--..-+.|+.+||.+-+.-.- .+.|..-+..+
T Consensus 83 ~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p---~s~i~di~~~W 159 (463)
T KOG0036|consen 83 ELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYP---ESDLEDIYDFW 159 (463)
T ss_pred HHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCC---hhHHHHHHHhh
Confidence 334444444322 6899999999999999999998888877888777788999999988776544 44444444444
Q ss_pred HHH
Q 027487 112 EKE 114 (223)
Q Consensus 112 ~~~ 114 (223)
+..
T Consensus 160 ~h~ 162 (463)
T KOG0036|consen 160 RHV 162 (463)
T ss_pred hhh
Confidence 444
No 18
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=82.97 E-value=5.9 Score=28.63 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=47.1
Q ss_pred HHHHHHHHhhcC--C--CCCCHHHHHHHHHH-cCCCC----CCHHHHHHHHhhcccccccccHHHHHHHhhHc
Q 027487 33 KEIENFFDKYAN--G--GIIDPDGIVTLCKD-LELEY----TDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 33 ~~l~~lFd~Y~~--~--~~I~~dG~~~~~~d-Lgv~p----ed~~~L~La~~l~a~~mg~~tr~eF~~G~~~l 96 (223)
+.+.+.|..|-. + +.|+.+.+.+++.. +|..+ ....+=-+.-.+....-|.|+-++|+..+..+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 456777988866 4 78999999999986 56433 23444445555677778999999999988765
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=82.67 E-value=13 Score=29.85 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=60.5
Q ss_pred ccHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCC
Q 027487 30 AKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQV 98 (223)
Q Consensus 30 ~~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~ 98 (223)
....++.+.|+.+-.+ +.|..+=+...+..||.+|..-.+-.+-..+....-|.|..++|+.-|...+.
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~ 75 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGE 75 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhc
Confidence 3456788889988544 78999999999999999999999999999999999999999999999987655
No 20
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=80.41 E-value=16 Score=30.71 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=66.4
Q ss_pred CCcccHHHHHHHHHhhc---CC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcC--CC
Q 027487 27 AGKAKAKEIENFFDKYA---NG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ--VN 99 (223)
Q Consensus 27 ~~~~~~~~l~~lFd~Y~---~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~--~d 99 (223)
.+.....+++++.+.|. .+ +.|+-+-+..++..||.+|.+..+.-|..-+.+ .-|.++-.+|+..|...- -+
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 33445555555555443 32 799999999999999999999999999999998 779999999999997743 35
Q ss_pred CHHHHHHHHHHHHHH
Q 027487 100 NLSKLKKAISELEKE 114 (223)
Q Consensus 100 si~~lk~~l~~l~~~ 114 (223)
+-++|+..+.-.+..
T Consensus 90 ~~Eel~~aF~~fD~d 104 (160)
T COG5126 90 KEEELREAFKLFDKD 104 (160)
T ss_pred cHHHHHHHHHHhCCC
Confidence 577777777665544
No 21
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=79.70 E-value=3.3 Score=29.84 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCC-CCCCHHHHHHHHHH----cCCCCCCHHHHHHHHhhc--ccccccccHHHHHHHhhH
Q 027487 34 EIENFFDKYANG-GIIDPDGIVTLCKD----LELEYTDVRILMLAWKLK--AVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 34 ~l~~lFd~Y~~~-~~I~~dG~~~~~~d----Lgv~ped~~~L~La~~l~--a~~mg~~tr~eF~~G~~~ 95 (223)
.|..+|.+|.++ ..|+.+.+.+|+.+ -.++++++.-++--+.-. ....+.+|.++|+.-|..
T Consensus 1 ei~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhCCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 478899999885 78999999999963 334455555554443221 224689999999988754
No 22
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=78.70 E-value=3.6 Score=29.01 Aligned_cols=65 Identities=9% Similarity=0.114 Sum_probs=42.9
Q ss_pred HHHhhcC-C-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhh--cccccccccHHHHHHHhhHcCCCCHHHHH
Q 027487 38 FFDKYAN-G-GIIDPDGIVTLCKDLELEYTDVRILMLAWKL--KAVKLGYFTQDEWETGLKTLQVNNLSKLK 105 (223)
Q Consensus 38 lFd~Y~~-~-~~I~~dG~~~~~~dLgv~ped~~~L~La~~l--~a~~mg~~tr~eF~~G~~~l~~dsi~~lk 105 (223)
+|++.-. + .....+-+..++++.|.+++ ++..++-+-+ +..++..+ +.-+..|++-|+.|+++.+
T Consensus 4 ~~e~~~gr~ls~~e~~~i~~~~~~~~~~~e-vI~~ai~~a~~~~~~~~~Yi--~~Il~~W~~~gi~T~e~~~ 72 (73)
T TIGR01446 4 FFEENFGRMLSPFEMEDLKYWLDEFGNSPE-LIKEALKEAVSNNKANYKYI--DAILNNWKNNGIKTVEDVE 72 (73)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHcCCCCHHHH--HHHHHHHHHcCCCCHHHHh
Confidence 4444433 1 44567888999999998744 5555555544 34444433 3566779999999999875
No 23
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=78.27 E-value=8.8 Score=32.20 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=55.5
Q ss_pred CcccHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhH
Q 027487 28 GKAKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 28 ~~~~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~ 95 (223)
......+|...|.-|=.+ +.|+.+=+...++-||-...+-.+=-|...+.-..-|.|+.++|++.+..
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 455678889999999655 78999999999999999987777766666666667899999999998865
No 24
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=77.25 E-value=15 Score=26.99 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhc-CC--C-CCCHHHHHHHHHH-cCC----CCCCHHHHHHHHhhcccccccccHHHHHHHhhHc
Q 027487 32 AKEIENFFDKYA-NG--G-IIDPDGIVTLCKD-LEL----EYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 32 ~~~l~~lFd~Y~-~~--~-~I~~dG~~~~~~d-Lgv----~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l 96 (223)
...|.+.|..|- .+ + .|+.+-+.+++.. +|. .|....+=-+...+....-|.|+-++|+.-+..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 456888999995 32 5 4999999999975 553 4444455555556677788999999999877664
No 25
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=75.24 E-value=15 Score=27.21 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=48.5
Q ss_pred HHHHHHHHhhc--CC-C-CCCHHHHHHHHHH-----cCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHc
Q 027487 33 KEIENFFDKYA--NG-G-IIDPDGIVTLCKD-----LELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 33 ~~l~~lFd~Y~--~~-~-~I~~dG~~~~~~d-----Lgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l 96 (223)
..|.+.|..|. +. + .|+.+-+..++.. +|-.+..-.+=-+.-.+....-|.|+-++|+.-+..+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45788999995 33 5 5999999999999 9977654444444445677778999999998776553
No 26
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=75.22 E-value=16 Score=27.33 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcC-C--CCCCHHHHHHHHHH-cCCCCCC-HHHHHHHHhhcccccccccHHHHHHHhhHc
Q 027487 33 KEIENFFDKYAN-G--GIIDPDGIVTLCKD-LELEYTD-VRILMLAWKLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 33 ~~l~~lFd~Y~~-~--~~I~~dG~~~~~~d-Lgv~ped-~~~L~La~~l~a~~mg~~tr~eF~~G~~~l 96 (223)
..|.+.|..|.. + +.|+.+.+..++.. ||-...+ -.+=-+...+....=|.|+-+||+.-|..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 457788888876 4 78999999999988 8844444 334444455666677999999998877665
No 27
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=74.28 E-value=7.1 Score=25.48 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=29.2
Q ss_pred cccccHHHHHHHhhHcCCC--CHHHHHHHHHHHHHHhCCCchhHHHHHh
Q 027487 81 LGYFTQDEWETGLKTLQVN--NLSKLKKAISELEKEVRTPPNFADFYSF 127 (223)
Q Consensus 81 mg~~tr~eF~~G~~~l~~d--si~~lk~~l~~l~~~l~~~~~Fk~~Y~f 127 (223)
-|.||+++|...++.+|.. |.+.+...+..++..=..--.|.+|..+
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~ 50 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISM 50 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHH
Confidence 3899999999999888765 5555555554444333323345555443
No 28
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=72.14 E-value=21 Score=26.61 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHHHc-----CCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcC
Q 027487 33 KEIENFFDKYANG----GIIDPDGIVTLCKDL-----ELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ 97 (223)
Q Consensus 33 ~~l~~lFd~Y~~~----~~I~~dG~~~~~~dL-----gv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~ 97 (223)
..|..+|.+|.+. +.|+.+.+..+++.- +-..++..+--+.-.+....=|.|+-+||+.-+..+-
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 4678899998855 279999999999875 2222333444445556666779999999998777653
No 29
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=70.59 E-value=12 Score=30.85 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=58.9
Q ss_pred HHHHHHhhc----CC-CCCCHHHHHHHHHHcCCCC---CCHHHHHHHHhhcccccccccHHHHHHHhhHc----CCC--C
Q 027487 35 IENFFDKYA----NG-GIIDPDGIVTLCKDLELEY---TDVRILMLAWKLKAVKLGYFTQDEWETGLKTL----QVN--N 100 (223)
Q Consensus 35 l~~lFd~Y~----~~-~~I~~dG~~~~~~dLgv~p---ed~~~L~La~~l~a~~mg~~tr~eF~~G~~~l----~~d--s 100 (223)
|+++|..|+ .. ..|+.....++|.|.||=. ....+=++-.+++++.-..|+-++|++.+..+ +++ +
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~~ 80 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKSS 80 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCTH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhccccc
Confidence 678999993 33 7899999999999999953 33344455566777776779999999998765 333 5
Q ss_pred HHHHHHHHH-----H--------HHHHhCCCchhHHHHHhHhh
Q 027487 101 LSKLKKAIS-----E--------LEKEVRTPPNFADFYSFAFR 130 (223)
Q Consensus 101 i~~lk~~l~-----~--------l~~~l~~~~~Fk~~Y~f~F~ 130 (223)
.+++...|- . ..+.+.|+..|.-+|.--|+
T Consensus 81 ~~~~~~kl~~~~~P~~~g~~~~~~v~rltD~s~YTG~hk~rf~ 123 (154)
T PF05517_consen 81 AEELKEKLTAGGGPSASGATKAGAVDRLTDKSTYTGSHKERFD 123 (154)
T ss_dssp HHHHHHHHHTT--SSSSS-TTS------SSSS-STTS---SS-
T ss_pred HHHHHHHHHccCccccccccccccccccCCCCccchhhhhcCC
Confidence 666666661 1 11223455666666666665
No 30
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=69.57 E-value=3.6 Score=24.50 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.2
Q ss_pred cccccccHHHHHHHhhHc
Q 027487 79 VKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 79 ~~mg~~tr~eF~~G~~~l 96 (223)
..=|.|+.+||+..|++|
T Consensus 12 d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 12 DGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp TSSSEEEHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHhC
Confidence 345889999999988765
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=68.72 E-value=31 Score=25.56 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=46.2
Q ss_pred HHHHHHHhhcCC---C-CCCHHHHHHHHHH-c----CCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcC
Q 027487 34 EIENFFDKYANG---G-IIDPDGIVTLCKD-L----ELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ 97 (223)
Q Consensus 34 ~l~~lFd~Y~~~---~-~I~~dG~~~~~~d-L----gv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~ 97 (223)
.|...|.+|.+. + .|+.+-+..++.. + +-.+.+-.+=-+...+....=|.|+-+||+.-+..+-
T Consensus 11 ~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 11 TLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 344559999853 3 4999999999977 3 2333434555566667777779999999998887763
No 32
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=67.25 E-value=29 Score=27.67 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=56.0
Q ss_pred cccHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCH----HHHHHHHh-hcccccccccHHHHHHHhhHcCC
Q 027487 29 KAKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDV----RILMLAWK-LKAVKLGYFTQDEWETGLKTLQV 98 (223)
Q Consensus 29 ~~~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~----~~L~La~~-l~a~~mg~~tr~eF~~G~~~l~~ 98 (223)
.+....+..+++++-.+ +.|+.+-...++...+....+. ..|.=|+. +-....|.||.+|+..-|..+|-
T Consensus 40 ~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 40 NPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGE 116 (151)
T ss_pred CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC
Confidence 36788899999999755 7899999999999888876543 35555554 46667899999999999999884
No 33
>PF14658 EF-hand_9: EF-hand domain
Probab=64.46 E-value=23 Score=25.45 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHcCC-CCCCHHHHHHHHhhccccc-ccccHHHHHHHhhH
Q 027487 46 GIIDPDGIVTLCKDLEL-EYTDVRILMLAWKLKAVKL-GYFTQDEWETGLKT 95 (223)
Q Consensus 46 ~~I~~dG~~~~~~dLgv-~ped~~~L~La~~l~a~~m-g~~tr~eF~~G~~~ 95 (223)
+.|-+.-+..|+..+|- +|+|-.+=-|+-.+-...- |.+.++.|+.-|+.
T Consensus 13 G~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 13 GRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred ceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 67888999999999999 9999999999999988887 99999999998875
No 34
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=59.03 E-value=23 Score=29.79 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=65.1
Q ss_pred CCCCCCcccccCccCCCcccHHHHHHHHHhhcCC---------------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhh
Q 027487 12 APQNPPAVKSSNARSAGKAKAKEIENFFDKYANG---------------GIIDPDGIVTLCKDLELEYTDVRILMLAWKL 76 (223)
Q Consensus 12 ~~~~~~~~~s~~~~~~~~~~~~~l~~lFd~Y~~~---------------~~I~~dG~~~~~~dLgv~ped~~~L~La~~l 76 (223)
+.-||.++|+ +....+.....+++++-.+|... +.|..+.+....+.|||.+.++.-++=-|-+
T Consensus 2 ~~~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~~~li~~L~~iQ~~~GyIp~e~~~~iA~~l~v~~a~V~gVatFY~~ 80 (169)
T PRK07571 2 TTDNPTTPPS-ATHPSGDKRFKVLEATMKRNQYRQDALIEVLHKAQELFGYLERDLLLYVARQLKLPLSRVYGVATFYHL 80 (169)
T ss_pred CCcCCCCCCC-ccCcCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHHHHHccc
Confidence 3445656654 23333345566889999999754 6799999999999999998776555444432
Q ss_pred -cccccccccHHHHHHHhhHcC-CCCH-HHH---HHHHHHHHHHhC-------CCchhHHHHHhHhhhc
Q 027487 77 -KAVKLGYFTQDEWETGLKTLQ-VNNL-SKL---KKAISELEKEVR-------TPPNFADFYSFAFRYH 132 (223)
Q Consensus 77 -~a~~mg~~tr~eF~~G~~~l~-~dsi-~~l---k~~l~~l~~~l~-------~~~~Fk~~Y~f~F~f~ 132 (223)
.-+-.|.+. +. |.++ ..+ ...+..|.+.|. .+..|.----.|++-+
T Consensus 81 f~~~P~Gk~~----------I~VC~g~aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~ClG~C 139 (169)
T PRK07571 81 FSLKPSGEHT----------CVVCTGTACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARCLGAC 139 (169)
T ss_pred cCcCCCCCEE----------EEEcCChHHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecccCcc
Confidence 222235543 32 3332 222 355666666662 2344555455555555
No 35
>PLN02223 phosphoinositide phospholipase C
Probab=58.82 E-value=22 Score=35.32 Aligned_cols=69 Identities=16% Similarity=0.077 Sum_probs=44.5
Q ss_pred CCcccHHHHHHHHHhhcCC-CCCCHHHHHHHHHHc-------CCCCCCHHHHHHHHhh------cccccccccHHHHHHH
Q 027487 27 AGKAKAKEIENFFDKYANG-GIIDPDGIVTLCKDL-------ELEYTDVRILMLAWKL------KAVKLGYFTQDEWETG 92 (223)
Q Consensus 27 ~~~~~~~~l~~lFd~Y~~~-~~I~~dG~~~~~~dL-------gv~ped~~~L~La~~l------~a~~mg~~tr~eF~~G 92 (223)
.....+..+.++|++|.+. +.++.+++.+|+.=| +...++...++=..+- +....+.++.++|..-
T Consensus 10 ~~~~~p~~v~~~f~~~~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~ 89 (537)
T PLN02223 10 HPANQPDLILNFFGNEFHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEF 89 (537)
T ss_pred CCCCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHH
Confidence 3445778899999999766 899999999999433 5555555555443221 1112244666777766
Q ss_pred hhH
Q 027487 93 LKT 95 (223)
Q Consensus 93 ~~~ 95 (223)
+..
T Consensus 90 L~s 92 (537)
T PLN02223 90 LFS 92 (537)
T ss_pred hcC
Confidence 644
No 36
>PLN02964 phosphatidylserine decarboxylase
Probab=57.58 E-value=50 Score=33.56 Aligned_cols=78 Identities=8% Similarity=0.036 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcCC--CCCCHHHHHHHHHHcC-CCCCCHH---HHHHHHhhcccccccccHHHHHHHhhHcCC-CCHHHHH
Q 027487 33 KEIENFFDKYANG--GIIDPDGIVTLCKDLE-LEYTDVR---ILMLAWKLKAVKLGYFTQDEWETGLKTLQV-NNLSKLK 105 (223)
Q Consensus 33 ~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLg-v~ped~~---~L~La~~l~a~~mg~~tr~eF~~G~~~l~~-dsi~~lk 105 (223)
.++.+.|+.+-.+ +.| +-..+..|| .+|++.. +--+...+....-|.|+.+||+..|..++. .+-+.++
T Consensus 143 ~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~ 218 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKE 218 (644)
T ss_pred HHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHH
Confidence 4455566666433 344 677788999 5887765 233333456666799999999999998874 5666677
Q ss_pred HHHHHHHHH
Q 027487 106 KAISELEKE 114 (223)
Q Consensus 106 ~~l~~l~~~ 114 (223)
..+..++.+
T Consensus 219 eaFk~fDkD 227 (644)
T PLN02964 219 ELFKAADLN 227 (644)
T ss_pred HHHHHhCCC
Confidence 777666543
No 37
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=54.14 E-value=27 Score=26.99 Aligned_cols=65 Identities=14% Similarity=0.240 Sum_probs=48.6
Q ss_pred cccHHHHHHHHHhhcCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhh-cccccccccHHHHHHHhhHc
Q 027487 29 KAKAKEIENFFDKYANG-GIIDPDGIVTLCKDLELEYTDVRILMLAWKL-KAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 29 ~~~~~~l~~lFd~Y~~~-~~I~~dG~~~~~~dLgv~ped~~~L~La~~l-~a~~mg~~tr~eF~~G~~~l 96 (223)
.....+..++|+..... +.|+.+....++..-|++.+.+.- -|-| -...-|..+++||+-+|+-+
T Consensus 6 ~~e~~~y~~~F~~l~~~~g~isg~~a~~~f~~S~L~~~~L~~---IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDPQDGKISGDQAREFFMKSGLPRDVLAQ---IWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CCHHHHHHHHHHCTSSSTTEEEHHHHHHHHHHTTSSHHHHHH---HHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCeEeHHHHHHHHHHcCCCHHHHHH---HHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 34456778899987544 789999999999999988754333 3333 44566999999999999864
No 38
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=53.39 E-value=28 Score=25.61 Aligned_cols=69 Identities=10% Similarity=-0.047 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHhh-cccccccccHHHHHHHhhHcCCCCHHHHHHHHHHHHHHhCCCchhHHHHHhHhhh
Q 027487 62 LEYTDVRILMLAWKL-KAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFYSFAFRY 131 (223)
Q Consensus 62 v~ped~~~L~La~~l-~a~~mg~~tr~eF~~G~~~l~~dsi~~lk~~l~~l~~~l~~~~~Fk~~Y~f~F~f 131 (223)
++++++..+--++.. -...-|.|+.+++...|+.+|+ +-+.++..+.....+-...-.|.+|+...-..
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGL-PQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 445555555555544 3345699999999999999886 33444444433322111122355555444333
No 39
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=52.60 E-value=16 Score=21.33 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=12.7
Q ss_pred HHHHHHhhcCC--CCCCHHHHHHHHH-HcC
Q 027487 35 IENFFDKYANG--GIIDPDGIVTLCK-DLE 61 (223)
Q Consensus 35 l~~lFd~Y~~~--~~I~~dG~~~~~~-dLg 61 (223)
|.++|+.|=.+ +.|+.+-+...+. .||
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 44555555322 4455555555555 344
No 40
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=51.77 E-value=73 Score=27.19 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=45.9
Q ss_pred CCCcccHHHHHHHHHhhcCC--CCCCHHHHHHHHHH--cCCCC----CCHHHHHHHHhhcccccccccHHH
Q 027487 26 SAGKAKAKEIENFFDKYANG--GIIDPDGIVTLCKD--LELEY----TDVRILMLAWKLKAVKLGYFTQDE 88 (223)
Q Consensus 26 ~~~~~~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~d--Lgv~p----ed~~~L~La~~l~a~~mg~~tr~e 88 (223)
....-.+.+++++|.+|... +.+...-+.+++.. .=.|| ....-..++|.|-.+.-|...||.
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~ 159 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKED 159 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHH
Confidence 66788999999999999874 78888888888875 22222 223445667777777788887765
No 41
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=50.86 E-value=40 Score=22.21 Aligned_cols=31 Identities=19% Similarity=0.029 Sum_probs=21.9
Q ss_pred cccccccccHHHHHHHhhHcCCCCHHHHHHHH
Q 027487 77 KAVKLGYFTQDEWETGLKTLQVNNLSKLKKAI 108 (223)
Q Consensus 77 ~a~~mg~~tr~eF~~G~~~l~~dsi~~lk~~l 108 (223)
....-|.|+.+|+...++.+|. +-+.++..+
T Consensus 9 D~~~~G~i~~~el~~~l~~~g~-~~~~~~~i~ 39 (67)
T cd00052 9 DPDGDGLISGDEARPFLGKSGL-PRSVLAQIW 39 (67)
T ss_pred CCCCCCcCcHHHHHHHHHHcCC-CHHHHHHHH
Confidence 3445699999999999998886 444444443
No 42
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=49.20 E-value=1.3e+02 Score=24.27 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=53.2
Q ss_pred HHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHH--HHHHHHhhc----------------------ccccccccHHH
Q 027487 35 IENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVR--ILMLAWKLK----------------------AVKLGYFTQDE 88 (223)
Q Consensus 35 l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~--~L~La~~l~----------------------a~~mg~~tr~e 88 (223)
++++-++--++ ...+.++++.+|+-++-+++.+. +-.|.-+++ ..=--+|...+
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~ 81 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFR 81 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHH
Confidence 34444444444 45677788888888877776533 333333332 22236889999
Q ss_pred HHHHhhHcCC------CCHHHHHHHHHHH----HHHhCCCchhHHHHH
Q 027487 89 WETGLKTLQV------NNLSKLKKAISEL----EKEVRTPPNFADFYS 126 (223)
Q Consensus 89 F~~G~~~l~~------dsi~~lk~~l~~l----~~~l~~~~~Fk~~Y~ 126 (223)
|++.+.++-- .+-...|..+-.| ...+.+...|++.|+
T Consensus 82 Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~ 129 (139)
T cd03567 82 FLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYD 129 (139)
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 9999877532 2445555555544 444544444666664
No 43
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=46.78 E-value=1.3e+02 Score=29.34 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=70.8
Q ss_pred CCcccHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCC-CCCHHHHHHHHhhcccccccccHHHHHHHhhHc-------
Q 027487 27 AGKAKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELE-YTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL------- 96 (223)
Q Consensus 27 ~~~~~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~-ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l------- 96 (223)
+...-+.++..+|+.+-.+ +.++++.+.+.+..|++. |..-..=.|...+.+.+-|...-+||.+-+..-
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~ 87 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRI 87 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHH
Confidence 3445567788999999765 789999999999999999 888888888999999999999999999887542
Q ss_pred ---------CCCCHHHHHHHHHHHHHHhC
Q 027487 97 ---------QVNNLSKLKKAISELEKEVR 116 (223)
Q Consensus 97 ---------~~dsi~~lk~~l~~l~~~l~ 116 (223)
|+-.+..|..+|.++-.+|.
T Consensus 88 F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~ 116 (463)
T KOG0036|consen 88 FQSIDLEHDGKIDPNEIWRYLKDLGIQLS 116 (463)
T ss_pred HhhhccccCCccCHHHHHHHHHHhCCccC
Confidence 23345666666666655553
No 44
>PLN02228 Phosphoinositide phospholipase C
Probab=45.73 E-value=85 Score=31.46 Aligned_cols=67 Identities=13% Similarity=0.254 Sum_probs=46.5
Q ss_pred cccHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCC-CCH-HHHHHHHhhccc----ccccccHHHHHHHhhH
Q 027487 29 KAKAKEIENFFDKYANGGIIDPDGIVTLCKDLELEY-TDV-RILMLAWKLKAV----KLGYFTQDEWETGLKT 95 (223)
Q Consensus 29 ~~~~~~l~~lFd~Y~~~~~I~~dG~~~~~~dLgv~p-ed~-~~L~La~~l~a~----~mg~~tr~eF~~G~~~ 95 (223)
...+++|..+|.+|...+.|+.+++.+|+.+..=+. .+. .+.-|-..++.. .-|.+|.++|..-+..
T Consensus 20 ~~~~~ei~~if~~~s~~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYSRNGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 447899999999998878899999999998865332 111 123333344321 2367999999888754
No 45
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=43.64 E-value=81 Score=20.96 Aligned_cols=41 Identities=22% Similarity=0.308 Sum_probs=30.6
Q ss_pred hhcccccccccHHHHHHHhhHcCCCC-HHHHHHHHHHHHHHh
Q 027487 75 KLKAVKLGYFTQDEWETGLKTLQVNN-LSKLKKAISELEKEV 115 (223)
Q Consensus 75 ~l~a~~mg~~tr~eF~~G~~~l~~ds-i~~lk~~l~~l~~~l 115 (223)
.+-...-|.|+++|+...++.++... -..++..+..+-+.+
T Consensus 8 ~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (66)
T PF13499_consen 8 KFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREF 49 (66)
T ss_dssp HHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHH
T ss_pred HHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence 34555679999999999999998654 556666666666655
No 46
>PLN02230 phosphoinositide phospholipase C 4
Probab=42.71 E-value=68 Score=32.37 Aligned_cols=69 Identities=14% Similarity=0.265 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHhhcCC-CCCCHHHHHHHHHHcCC-----CCCCHHHHHHHHhhc-----ccccccccHHHHHHHhhH
Q 027487 27 AGKAKAKEIENFFDKYANG-GIIDPDGIVTLCKDLEL-----EYTDVRILMLAWKLK-----AVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 27 ~~~~~~~~l~~lFd~Y~~~-~~I~~dG~~~~~~dLgv-----~ped~~~L~La~~l~-----a~~mg~~tr~eF~~G~~~ 95 (223)
.....+..+..+|.+|.+. +.++.+++.+|+.+-.= ++++..-++.-..-. ...-+.+|.++|..-+..
T Consensus 23 ~~~~p~~ei~~lf~~~s~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 23 TESGPVADVRDLFEKYADGDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred ccCCCcHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3455788999999999766 79999999999987662 233334444322111 112345899999887644
No 47
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=42.14 E-value=1.1e+02 Score=25.63 Aligned_cols=65 Identities=14% Similarity=0.167 Sum_probs=47.4
Q ss_pred cHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccc--cccccHHHHHHHhhH
Q 027487 31 KAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVK--LGYFTQDEWETGLKT 95 (223)
Q Consensus 31 ~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~--mg~~tr~eF~~G~~~ 95 (223)
...++.++|+-|-.. +.|+....---+-.||.+|.+..++-..-...+.. +-.++-++|+--++.
T Consensus 9 ~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~ 77 (152)
T KOG0030|consen 9 QMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQ 77 (152)
T ss_pred hHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHH
Confidence 335667777666433 78999999999999999999988887777776663 356666666654444
No 48
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=41.47 E-value=94 Score=30.42 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCCCCHHHHHHHHHHHHHHhCC------Cc
Q 027487 46 GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISELEKEVRT------PP 119 (223)
Q Consensus 46 ~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~dsi~~lk~~l~~l~~~l~~------~~ 119 (223)
..+.+|-..+|.++|-.+.-..+. ..+..-. -|.||..+|-.-+-.+-..+.++...++.+++.+..+ -+
T Consensus 301 ~kLs~deF~~F~e~Lq~Eil~lEF---~~~~~~~-~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~ 376 (489)
T KOG2643|consen 301 GKLSIDEFLKFQENLQEEILELEF---ERFDKGD-SGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQ 376 (489)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHH---HHhCccc-ccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHH
Confidence 789999999999999844332322 2222222 2999999999999888777778888888888888854 25
Q ss_pred hhHHHHHhHhhhc
Q 027487 120 NFADFYSFAFRYH 132 (223)
Q Consensus 120 ~Fk~~Y~f~F~f~ 132 (223)
.|+.|.+|..+.+
T Consensus 377 Ef~~Ff~Fl~~l~ 389 (489)
T KOG2643|consen 377 EFKAFFRFLNNLN 389 (489)
T ss_pred HHHHHHHHHhhhh
Confidence 7888888876654
No 49
>PF01314 AFOR_C: Aldehyde ferredoxin oxidoreductase, domains 2 & 3; InterPro: IPR001203 Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family [] contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates []. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea []; carboxylic acid reductase found in clostridia []; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum []. GAPOR may be involved in glycolysis [], but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases []. This entry represents the C-terminal region of these enzymes, containing the alpha-helical structural domains 2 and 3 [, ].; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016625 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1B25_C 1B4N_C 1AOR_B.
Probab=40.58 E-value=14 Score=34.59 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=29.9
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHH
Q 027487 53 IVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEW 89 (223)
Q Consensus 53 ~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF 89 (223)
+..+|.++|+|.-+... +|||.|.+-..|.|++++.
T Consensus 116 ~~~lcd~~GlDtis~G~-~ia~~me~~e~G~i~~~d~ 151 (382)
T PF01314_consen 116 ANDLCDDYGLDTISAGN-TIAWAMELYEKGLITKEDT 151 (382)
T ss_dssp HHHHHHHHTB-HHHHHH-HHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHhCCcHHHHHH-HHHHHHHHHHCCCCChhhc
Confidence 34689999999866654 8999999999999999887
No 50
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=40.48 E-value=1.6e+02 Score=23.11 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=45.5
Q ss_pred cccHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHh
Q 027487 29 KAKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGL 93 (223)
Q Consensus 29 ~~~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~ 93 (223)
.....+|.-.|.++=.+ +.|+.+=+..++ +.+....+--+...+.+..=|.||.+||..++
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45667788899999433 689999888776 44544444455666677778999999999988
No 51
>PLN02222 phosphoinositide phospholipase C 2
Probab=39.80 E-value=70 Score=32.17 Aligned_cols=66 Identities=17% Similarity=0.267 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCC----CCCHHHHHHHHhhcccccccccHHHHHHHhhH
Q 027487 29 KAKAKEIENFFDKYANGGIIDPDGIVTLCKDLELE----YTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 29 ~~~~~~l~~lFd~Y~~~~~I~~dG~~~~~~dLgv~----ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~ 95 (223)
...+..|..+|.+|.+.+.|+.+++.+|+.+-.=+ .++...|+=.+ -....-+.++.++|..-+..
T Consensus 21 ~~~~~ei~~if~~~~~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 21 SEAPREIKTIFEKYSENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-SSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCCcHHHHHHHHHhcCCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-hhhhhccCcCHHHHHHHhcC
Confidence 44677999999999877899999999999986544 33333332222 11223466899999988865
No 52
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=39.54 E-value=1.5e+02 Score=25.25 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhH
Q 027487 29 KAKAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 29 ~~~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~ 95 (223)
......|...|.-+.++ +.|++.-+-+.+..||=++.|-.+--.-.-..--.-|+|+.+||+.-|+.
T Consensus 102 ~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 102 RDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 33566677777777665 78889999999999998888877666655555556689999999888764
No 53
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=37.34 E-value=1.7e+02 Score=22.07 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCC
Q 027487 46 GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQV 98 (223)
Q Consensus 46 ~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~ 98 (223)
+.|..+-+++||..-||.......-.++..|+....-.|..++=..-++++--
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~ 65 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAK 65 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999988877766666543
No 54
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=36.77 E-value=68 Score=23.47 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=29.8
Q ss_pred cHHHHHHHhhHcCCCCHHHHHHHHHHHHHHhCCCchhHHHH
Q 027487 85 TQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFY 125 (223)
Q Consensus 85 tr~eF~~G~~~l~~dsi~~lk~~l~~l~~~l~~~~~Fk~~Y 125 (223)
|+.+|+-.+ -+|.|++.|-+.+..++..|.++..-..||
T Consensus 2 tk~eyLlkf--Rkcss~eTLEkv~e~~~y~L~~~~e~~~f~ 40 (71)
T PRK10391 2 TVQDYLLKF--RKISSLESLEKLFDHLNYTLTDDQEIINMY 40 (71)
T ss_pred cHHHHHHHH--HhcCcHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 677777444 469999999999999999998765555555
No 55
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=35.51 E-value=92 Score=21.20 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHhhcccccccccHHHHHHH-hhHcC-CCCHHHHHHHHHHHHHHhCC
Q 027487 64 YTDVRILMLAWKLKAVKLGYFTQDEWETG-LKTLQ-VNNLSKLKKAISELEKEVRT 117 (223)
Q Consensus 64 ped~~~L~La~~l~a~~mg~~tr~eF~~G-~~~l~-~dsi~~lk~~l~~l~~~l~~ 117 (223)
+..-+.-+|+.++..+.. .+|+++..+- |..-. ..+...++..|..|++.|.+
T Consensus 6 Lt~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~~ 60 (78)
T smart00862 6 LTPKEFRLLELLLRNPGR-VVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLED 60 (78)
T ss_pred cCHHHHHHHHHHHhCCCC-ccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHhc
Confidence 344455677888877655 8999999996 44322 45667899999999999853
No 56
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=33.90 E-value=3.2e+02 Score=24.26 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=52.6
Q ss_pred cHHHHHHHHHhhcCC--CCCCHHHHHHHHHHcCCCC-CCHHHHHHHHhhcccccccccHHHHHHHhhHc
Q 027487 31 KAKEIENFFDKYANG--GIIDPDGIVTLCKDLELEY-TDVRILMLAWKLKAVKLGYFTQDEWETGLKTL 96 (223)
Q Consensus 31 ~~~~l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~p-ed~~~L~La~~l~a~~mg~~tr~eF~~G~~~l 96 (223)
....|..+|..---+ +.|..+-+++.+...+-++ ....+-.|-.++..+.-|.+.-+||..-|+.+
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i 123 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI 123 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 355777888775333 7899999999998888887 44566677788999999999999999888765
No 57
>PHA01083 hypothetical protein
Probab=33.71 E-value=58 Score=27.15 Aligned_cols=52 Identities=15% Similarity=0.161 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhH---cCCCCHH
Q 027487 47 IIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT---LQVNNLS 102 (223)
Q Consensus 47 ~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~---l~~dsi~ 102 (223)
.|+-+-++.+++-+|+||+.+...+.|.+-+.|.. |.-|.+-.++ +|..+|+
T Consensus 43 ~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~----kalWesIaKKlnglgl~~is 97 (149)
T PHA01083 43 YISDEEAIFLAESAGIDPEIALLGCHADRNENPRA----KAIWESIAKKQNGLGLRTIS 97 (149)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHhccchhHHH
Confidence 68889999999999999999999999998887775 5556665555 4555544
No 58
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=33.11 E-value=25 Score=23.59 Aligned_cols=36 Identities=8% Similarity=0.107 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCCCCH
Q 027487 30 AKAKEIENFFDKYANGGIIDPDGIVTLCKDLELEYTDV 67 (223)
Q Consensus 30 ~~~~~l~~lFd~Y~~~~~I~~dG~~~~~~dLgv~ped~ 67 (223)
.+...|.+++..- ...+..+-+.++|+.||++|+++
T Consensus 22 is~~tl~~~~~~~--~~~~~~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 22 ISRSTLSRILNGK--PSNPSLDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp --HHHHHHHHTTT-------HHHHHHHHHHHT--HHHC
T ss_pred cCHHHHHHHHhcc--cccccHHHHHHHHHHcCCCHHHH
Confidence 3444455555421 15799999999999999998865
No 59
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=30.47 E-value=6.2 Score=27.74 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCCCCHHHHHHHH
Q 027487 48 IDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVNNLSKLKKAI 108 (223)
Q Consensus 48 I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~dsi~~lk~~l 108 (223)
...+-+.+++++.|.+++ ++..++-+-+.....-.=--+.-++.|...|+.|+++..++.
T Consensus 16 ~e~~~l~~~~~~~~~~~~-~v~~ai~~~~~~~~~~~~Yi~~Il~~W~~~gi~t~e~~~~~~ 75 (77)
T PF07261_consen 16 SEIEKLEKWIDDYGFSPE-VVNEAIEYALENNKRSFNYIEKILNNWKQKGIKTVEDAEEYE 75 (77)
T ss_dssp HHHHHHHHHHCCCHHHHH-HHHHHHHHHHHCT--SHHHHHHHHHHHHHCT--SCCCCT---
T ss_pred HHHHHHHHHHHHcCCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCHHHHHHHh
Confidence 444566666765555544 444444444421111122223566778888888877655443
No 60
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=30.00 E-value=1.2e+02 Score=20.72 Aligned_cols=50 Identities=18% Similarity=0.120 Sum_probs=36.8
Q ss_pred HHHHHHHHhhcccccccccHHHHHHHhhHcC-CCCHHHHHHHHHHHHHHhCC
Q 027487 67 VRILMLAWKLKAVKLGYFTQDEWETGLKTLQ-VNNLSKLKKAISELEKEVRT 117 (223)
Q Consensus 67 ~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~-~dsi~~lk~~l~~l~~~l~~ 117 (223)
.+.-+|+.++..+.. .+||++.++.+-.-. -.+-..+..+|..|++.|.+
T Consensus 9 ~e~~lL~~L~~~~~~-~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~~ 59 (77)
T PF00486_consen 9 KEFRLLELLLRNPGR-VVSREELIEALWGDEEDVSDNSLDVHISRLRKKLED 59 (77)
T ss_dssp HHHHHHHHHHHTTTS-EEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCC-CCCHHHhCChhhhcccccchhhHHHHHHHHHHHHhh
Confidence 445566666655433 799999998755544 37788999999999999843
No 61
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]
Probab=29.92 E-value=53 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.282 Sum_probs=32.1
Q ss_pred cCCCcccHHHHHHHHHhhcCC---CCCCHHHHHHHHHHcCCC
Q 027487 25 RSAGKAKAKEIENFFDKYANG---GIIDPDGIVTLCKDLELE 63 (223)
Q Consensus 25 ~~~~~~~~~~l~~lFd~Y~~~---~~I~~dG~~~~~~dLgv~ 63 (223)
..+-+...+...+||.+|..+ -.++.+++..++...|+-
T Consensus 41 qttD~~vn~at~~Lf~~~~t~e~l~~a~~~~l~~~I~~iGly 82 (211)
T COG0177 41 QTTDEVVNKATPALFKRYPTPEDLLNADEEELEELIKSIGLY 82 (211)
T ss_pred cCchHHHHHHHHHHHHHcCCHHHHHcCCHHHHHHHHHhcCCc
Confidence 444567778889999999987 478999999999999864
No 62
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=29.83 E-value=2.9e+02 Score=23.59 Aligned_cols=136 Identities=17% Similarity=0.229 Sum_probs=88.1
Q ss_pred cccHHHHHHHHHhhcCC------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCCCCHH
Q 027487 29 KAKAKEIENFFDKYANG------GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVNNLS 102 (223)
Q Consensus 29 ~~~~~~l~~lFd~Y~~~------~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~dsi~ 102 (223)
.-+..+|+.|+.+|+.- +.|..+-+..+. .+..+|=...++-+....+.... ++.++|++++.-..+.+..
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~--v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDP--VDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCc--cCHHHHHHHHhhhcCCccH
Confidence 35577888888888742 678899888777 88889988888888877776665 9999999999987776554
Q ss_pred HHHHHHHHHHHHhCCCchhHHHHHhHhhhccCccccccccHHHHHHHHHHhhCCCch---hhHHHHHHHHHhc---CCCc
Q 027487 103 KLKKAISELEKEVRTPPNFADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQFR---RQVDLLIDYLKVQ---SNYK 176 (223)
Q Consensus 103 ~lk~~l~~l~~~l~~~~~Fk~~Y~f~F~f~k~~~~qK~L~le~Ai~~W~lll~~~~~---~~l~~w~~FL~~~---~~~k 176 (223)
..|- +|+|..= +-.+...|.-+.-...-..+++..-. ..+..=++++-.+ ..--
T Consensus 103 ~~Kl-------------------~faF~vY-D~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG 162 (187)
T KOG0034|consen 103 REKL-------------------RFAFRVY-DLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDG 162 (187)
T ss_pred HHHH-------------------HHHHHHh-cCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCC
Confidence 4222 2343332 11234447777766777777764332 3344444444211 1223
Q ss_pred cCChhhhhHHH
Q 027487 177 VINLDQWLGIF 187 (223)
Q Consensus 177 ~IskD~W~~~l 187 (223)
.||.+-|+-++
T Consensus 163 ~IsfeEf~~~v 173 (187)
T KOG0034|consen 163 KISFEEFCKVV 173 (187)
T ss_pred cCcHHHHHHHH
Confidence 67777777554
No 63
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=29.36 E-value=1.3e+02 Score=22.31 Aligned_cols=68 Identities=15% Similarity=0.264 Sum_probs=40.4
Q ss_pred HHHHHHHHhhccc--ccccccHHHHHHHhhH-cCC--CCHHHHHHHHHHHHHHhCCCchhHHHHHhHhhhccC
Q 027487 67 VRILMLAWKLKAV--KLGYFTQDEWETGLKT-LQV--NNLSKLKKAISELEKEVRTPPNFADFYSFAFRYHLT 134 (223)
Q Consensus 67 ~~~L~La~~l~a~--~mg~~tr~eF~~G~~~-l~~--dsi~~lk~~l~~l~~~l~~~~~Fk~~Y~f~F~f~k~ 134 (223)
+..|+-++..=+. .-|.|+++|+..-++. +|- ...+.+++.+..++.+=...-.|.+|-......+..
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHH
Confidence 4455556555454 5699999999999998 772 222333333333332222234688877776666543
No 64
>PLN02952 phosphoinositide phospholipase C
Probab=29.27 E-value=1.6e+02 Score=29.75 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=44.4
Q ss_pred cccHHHHHHHHHhhcCC-CCCCHHHHHHHHHHcC----CCCCCHHHHHHHHh--hc-ccc--cccccHHHHHHHhhH
Q 027487 29 KAKAKEIENFFDKYANG-GIIDPDGIVTLCKDLE----LEYTDVRILMLAWK--LK-AVK--LGYFTQDEWETGLKT 95 (223)
Q Consensus 29 ~~~~~~l~~lFd~Y~~~-~~I~~dG~~~~~~dLg----v~ped~~~L~La~~--l~-a~~--mg~~tr~eF~~G~~~ 95 (223)
...++.|..+|.+|... +.|+.+.+.+|+.+-. +++++..-|+-... -+ ... -..++.++|..-+..
T Consensus 34 ~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 34 AEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred CCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 34688999999999876 7899999999998744 34444443322111 01 111 134789999988853
No 65
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=29.16 E-value=35 Score=24.54 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.7
Q ss_pred cccccHHHHHHHHHHhhCCCch
Q 027487 138 QKNIDIETICELLNLVLGPQFR 159 (223)
Q Consensus 138 qK~L~le~Ai~~W~lll~~~~~ 159 (223)
.|.|.++.|++.|+-|+..+|.
T Consensus 47 rr~l~~~~A~e~W~~L~~~GW~ 68 (75)
T PF07864_consen 47 RRRLTREEARELWKELQKTGWR 68 (75)
T ss_pred EEEEEHHHHHHHHHHHHHcCCE
Confidence 5889999999999999988774
No 66
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=28.99 E-value=63 Score=24.96 Aligned_cols=64 Identities=23% Similarity=0.338 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCCC---CHHHHHHHHhhcccccccccHHHHHHHhhH-cCC----CCHHHHHHHHHHHHHHhCCCchh
Q 027487 52 GIVTLCKDLELEYT---DVRILMLAWKLKAVKLGYFTQDEWETGLKT-LQV----NNLSKLKKAISELEKEVRTPPNF 121 (223)
Q Consensus 52 G~~~~~~dLgv~pe---d~~~L~La~~l~a~~mg~~tr~eF~~G~~~-l~~----dsi~~lk~~l~~l~~~l~~~~~F 121 (223)
-+++|+.+ .++|| .+..||.+-. -|.|+-|||...++. ++. .=+.=||+.||.|++++.+.+.|
T Consensus 12 tLi~las~-~~spev~~~Vr~LV~~L~-----~~~i~~EeF~~~Lq~~lns~pqP~lvPFLK~~lp~Lr~~l~~~~~~ 83 (96)
T PF07531_consen 12 TLIQLASD-KQSPEVGENVRELVQNLV-----DGKIEAEEFTSKLQEELNSSPQPYLVPFLKKSLPALRQELPNCARF 83 (96)
T ss_dssp HHHHHHCC-SC-CCHHHHHHHHHHHHH-----TTSS-HHHHHHHHHHHCTSS--TTHHHHHHHHHHHHHHCHCHHHHH
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHhcCCCCcchHHHHHHhHHHHHHHHHHHHHH
Confidence 35677777 45553 3556665543 378999999999977 443 33789999999999998654433
No 67
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=28.83 E-value=1.2e+02 Score=21.14 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=23.9
Q ss_pred cHHHHHHHHHhhcCC-CCCCHHHHHHHHHHcCCCCCCH
Q 027487 31 KAKEIENFFDKYANG-GIIDPDGIVTLCKDLELEYTDV 67 (223)
Q Consensus 31 ~~~~l~~lFd~Y~~~-~~I~~dG~~~~~~dLgv~ped~ 67 (223)
....|++.|++-.=- ..++.+-...||.+|||+..-+
T Consensus 12 Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vv 49 (58)
T TIGR01565 12 QKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVF 49 (58)
T ss_pred HHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHe
Confidence 334455555543211 2378889999999999986533
No 68
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=28.72 E-value=60 Score=21.27 Aligned_cols=36 Identities=22% Similarity=0.324 Sum_probs=26.5
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCCCCCHHH
Q 027487 31 KAKEIENFFDKYANGGIIDPDGIVTLCKDLELEYTDVRI 69 (223)
Q Consensus 31 ~~~~l~~lFd~Y~~~~~I~~dG~~~~~~dLgv~ped~~~ 69 (223)
.-..|++.|+. ...++.+-+..++..|||++..|..
T Consensus 11 q~~~L~~~f~~---~~~p~~~~~~~la~~l~l~~~~V~~ 46 (57)
T PF00046_consen 11 QLKVLEEYFQE---NPYPSKEEREELAKELGLTERQVKN 46 (57)
T ss_dssp HHHHHHHHHHH---SSSCHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHH---hcccccccccccccccccccccccc
Confidence 33455555554 5678889999999999999887654
No 69
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=27.85 E-value=2.5e+02 Score=22.33 Aligned_cols=56 Identities=9% Similarity=0.039 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHc--CCCCHHHHHHHHHHHHHHh
Q 027487 47 IIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTL--QVNNLSKLKKAISELEKEV 115 (223)
Q Consensus 47 ~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l--~~dsi~~lk~~l~~l~~~l 115 (223)
-||.-=..+.|..|||+|. .++|..|.++...--..+ ....-.+|+..+..-.+.+
T Consensus 24 GIG~~~A~~ic~~lgi~~~-------------~~~~~Lt~~qi~~l~~~i~~~~~i~~dL~~~~~~dI~rl 81 (122)
T CHL00137 24 GIGLTSAKEILEKANIDPD-------------IRTKDLTDEQISALREIIEENYQVEGDLRRFESLNIKRL 81 (122)
T ss_pred cccHHHHHHHHHHcCcCcC-------------cCcccCCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 3777888899999999998 788999988866554444 2233346666665444444
No 70
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=27.83 E-value=40 Score=24.39 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=14.3
Q ss_pred cccccHHHHHHHhhHc
Q 027487 81 LGYFTQDEWETGLKTL 96 (223)
Q Consensus 81 mg~~tr~eF~~G~~~l 96 (223)
-++|||++|++.++.+
T Consensus 39 ~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 39 KKKISREEFVRKLRQI 54 (70)
T ss_pred HCCCCHHHHHHHHHHH
Confidence 5899999999999884
No 71
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=26.34 E-value=1.4e+02 Score=21.17 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCC-CCHHHHHHHHHHHHHHhCC
Q 027487 62 LEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQV-NNLSKLKKAISELEKEVRT 117 (223)
Q Consensus 62 v~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~-dsi~~lk~~l~~l~~~l~~ 117 (223)
|.+..-+..+|+.++..+.. .+||++..+.+-.-.. .+-..+..+|..|++.|.+
T Consensus 22 v~Lt~~e~~lL~~L~~~~~~-~vs~~~l~~~lw~~~~~~~~~~l~~~I~rLRkkl~~ 77 (95)
T cd00383 22 VELTPKEFELLELLARNPGR-VLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLED 77 (95)
T ss_pred EEeCHHHHHHHHHHHhCCCC-cCCHHHHHHHhcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 44555666777777777654 8899999987644332 3567799999999999953
No 72
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=26.08 E-value=1.3e+02 Score=22.00 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=20.7
Q ss_pred cccccHHHHHHHhhH-----cCCC-CHHHHHHHHHHH
Q 027487 81 LGYFTQDEWETGLKT-----LQVN-NLSKLKKAISEL 111 (223)
Q Consensus 81 mg~~tr~eF~~G~~~-----l~~d-si~~lk~~l~~l 111 (223)
-|.|+++|+...++. +|+. +-+.+...+..+
T Consensus 24 dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~ 60 (94)
T cd05031 24 KNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDL 60 (94)
T ss_pred CCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHh
Confidence 489999999999886 3443 444455544433
No 73
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=25.80 E-value=76 Score=19.35 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCccCChhhhhHHHHHhh
Q 027487 164 LLIDYLKVQSNYKVINLDQWLGIFRFCN 191 (223)
Q Consensus 164 ~w~~FL~~~~~~k~IskD~W~~~l~F~~ 191 (223)
.|++.+.+.. .-+||++.=+.||.|.+
T Consensus 4 EW~~Li~eA~-~~Gls~eeir~FL~~~k 30 (30)
T PF08671_consen 4 EWVELIKEAK-ESGLSKEEIREFLEFNK 30 (30)
T ss_dssp HHHHHHHHHH-HTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCCHHHHHHHHHhCC
Confidence 5999998753 45999999999998853
No 74
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=25.43 E-value=92 Score=25.44 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=48.1
Q ss_pred CCCCCCHHHHHHHHhhcccccccccHHHHHH-HhhHcCCCCHHHHHHHHHHHHHHhCCC----chhHHHHHhHhhhc
Q 027487 61 ELEYTDVRILMLAWKLKAVKLGYFTQDEWET-GLKTLQVNNLSKLKKAISELEKEVRTP----PNFADFYSFAFRYH 132 (223)
Q Consensus 61 gv~ped~~~L~La~~l~a~~mg~~tr~eF~~-G~~~l~~dsi~~lk~~l~~l~~~l~~~----~~Fk~~Y~f~F~f~ 132 (223)
-|..+-.+.-||..+++ ..-..++|+++++ -|..-.+..-. |...|..||..|.+. .+++.|++==|.|.
T Consensus 29 ~v~l~~~~~~lL~~L~e-~~geVvsk~eL~~~VW~~~~v~~~~-Ltq~I~~LRr~L~d~~~~~~~I~TvPrrGyk~~ 103 (148)
T COG3710 29 VVKLGPRELKLLSLLLE-RAGEVVSKDELLDAVWPGRIVTVNT-LTQAISALRRALRDIGDGHRLIATVPRRGYKFT 103 (148)
T ss_pred EEEecHHHHHHHHHHHh-ccCceecHHHHHHHhCCCceEccCh-HHHHHHHHHHHHhccCCcceEEEEeCCcceEEe
Confidence 34456667778888888 3346899999999 57775553333 999999999999543 34566655444443
No 75
>PF06535 RGM_N: Repulsive guidance molecule (RGM) N-terminus; InterPro: IPR010536 This entry represents the N-terminal region of several mammalian and one bird sequence from Gallus gallus (Chicken). All of the mammalian proteins are hypothetical and have no known function but Q8JG54 from SWISSPROT from the chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum [].
Probab=24.18 E-value=22 Score=29.98 Aligned_cols=15 Identities=33% Similarity=0.880 Sum_probs=9.8
Q ss_pred CCCCCCCCCCchhhHH
Q 027487 197 DLENYDETQAWPLILD 212 (223)
Q Consensus 197 dls~YDe~~AWP~lID 212 (223)
++.-=-.+||||+ ||
T Consensus 116 ~fqTC~v~GAWPL-Id 130 (161)
T PF06535_consen 116 EFQTCKVEGAWPL-ID 130 (161)
T ss_pred Cceeeeeecceee-ec
Confidence 4444447899994 45
No 76
>PRK09849 putative oxidoreductase; Provisional
Probab=24.10 E-value=1e+02 Score=31.66 Aligned_cols=30 Identities=17% Similarity=0.062 Sum_probs=26.7
Q ss_pred HHHHHcCCCCCCHHHHHHHHhhcccccccccH
Q 027487 55 TLCKDLELEYTDVRILMLAWKLKAVKLGYFTQ 86 (223)
Q Consensus 55 ~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr 86 (223)
.+|++||+|. +.-. +|||.|.+-..|.+++
T Consensus 371 ~Lcn~lGlDt-S~G~-tIA~amEl~ekGil~~ 400 (702)
T PRK09849 371 NLFDDYGLWC-NYGQ-LHRDFTYCYSKGVFKR 400 (702)
T ss_pred HHHHHhCCcc-cHHH-HHHHHHHHHHCCCCCc
Confidence 8899999999 6644 8999999999999986
No 77
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=24.04 E-value=1.1e+02 Score=15.41 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=11.7
Q ss_pred ccccccccHHHHHHHhhH
Q 027487 78 AVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 78 a~~mg~~tr~eF~~G~~~ 95 (223)
...-|.++.++|...++.
T Consensus 11 ~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 11 KDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CCCCCcEeHHHHHHHHHh
Confidence 334567777777776654
No 78
>KOG2873 consensus Ubiquinol cytochrome c reductase assembly protein CBP3 [Energy production and conversion]
Probab=23.63 E-value=1.8e+02 Score=26.63 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=35.7
Q ss_pred hHHHHHhHhhhccCccccccccHHHHHHHHHHhhCCC---chhhHHHHHHHHHhc
Q 027487 121 FADFYSFAFRYHLTEEKQKNIDIETICELLNLVLGPQ---FRRQVDLLIDYLKVQ 172 (223)
Q Consensus 121 Fk~~Y~f~F~f~k~~~~qK~L~le~Ai~~W~lll~~~---~~~~l~~w~~FL~~~ 172 (223)
++.+|.=.|.|- | |==+=+-..|+++|+-||.++ -+.|++.=.+|++.+
T Consensus 201 ~~qf~gaifaYD--e-G~l~dD~vLA~alWRnlF~~r~~~D~~hle~vV~YvR~q 252 (284)
T KOG2873|consen 201 ERQFYGAIFAYD--E-GFLSDDRVLATALWRNLFSGRGNVDLVHLEAVVRYVRSQ 252 (284)
T ss_pred HHHHHHHHHHhc--c-cccccchHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHH
Confidence 566677667663 3 444445589999999999876 235889999999864
No 79
>cd04752 Commd4 COMM_Domain containing protein 4. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=23.52 E-value=3.2e+02 Score=22.71 Aligned_cols=73 Identities=18% Similarity=0.251 Sum_probs=51.4
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHcCCCCCCHHHH--HHHHhhcccccccccHHHHHHHhhHcCCCC--HHHHHHHHHH
Q 027487 37 NFFDKYANGGIIDPDGIVTLCKDLELEYTDVRIL--MLAWKLKAVKLGYFTQDEWETGLKTLQVNN--LSKLKKAISE 110 (223)
Q Consensus 37 ~lFd~Y~~~~~I~~dG~~~~~~dLgv~ped~~~L--~La~~l~a~~mg~~tr~eF~~G~~~l~~ds--i~~lk~~l~~ 110 (223)
++-..+.. +.|+.+-+.++..|+|++..++... +|.++|....---++.++|.+-+..+|.+. ++.+.+...+
T Consensus 12 ~v~~~~~~-~~~~~~~~~kl~~~~~~~~~~lk~~va~l~fiL~~A~k~n~~~~~l~~eL~~lglp~e~~~~l~~~~~~ 88 (174)
T cd04752 12 QVLKDLLG-EGIDYEKVLKLTADAKFESGDVKASIAVLSFILSSAAKYNVDGESLSSELQQLGLPKEHATSLCRSYEE 88 (174)
T ss_pred HHHHHHHh-ccCCHHHHHHHHHHhCCCHhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33444443 4599999999999999999887644 466777444444699999999999888754 4444444433
No 80
>PLN02964 phosphatidylserine decarboxylase
Probab=23.22 E-value=2.9e+02 Score=28.22 Aligned_cols=61 Identities=15% Similarity=-0.016 Sum_probs=46.7
Q ss_pred HHHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhH
Q 027487 35 IENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 35 l~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~ 95 (223)
+.++|..+-.+ +.|+.+-.+.++..+|-...+-.+.-+-..+.-..-|.||.+||.+.|+.
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 78889887433 78999999999999985444444444555556666799999999999988
No 81
>PRK10945 gene expression modulator; Provisional
Probab=23.13 E-value=1.3e+02 Score=22.10 Aligned_cols=38 Identities=21% Similarity=0.443 Sum_probs=29.0
Q ss_pred cHHHHHHHhhHcCCCCHHHHHHHHHHHHHHhCCCchhHHHH
Q 027487 85 TQDEWETGLKTLQVNNLSKLKKAISELEKEVRTPPNFADFY 125 (223)
Q Consensus 85 tr~eF~~G~~~l~~dsi~~lk~~l~~l~~~l~~~~~Fk~~Y 125 (223)
|+.+|+-.++ .|.|.+.|-+.+..++..|.+ ..+..||
T Consensus 7 tk~dyL~~fR--rcss~eTLEkvie~~~~~L~~-~E~~~f~ 44 (72)
T PRK10945 7 TKTDYLMRLR--RCQTIDTLERVIEKNKYELSD-DELAVFY 44 (72)
T ss_pred cHHHHHHHHH--hcCcHHHHHHHHHHhhccCCH-HHHHHHH
Confidence 8888886554 599999999999999988876 3444444
No 82
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=23.07 E-value=36 Score=23.51 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=24.1
Q ss_pred cHHHHHHHHHhhcCCCCCCHHHHHHHH-HHcCCCCCCHHHHH
Q 027487 31 KAKEIENFFDKYANGGIIDPDGIVTLC-KDLELEYTDVRILM 71 (223)
Q Consensus 31 ~~~~l~~lFd~Y~~~~~I~~dG~~~~~-~dLgv~ped~~~L~ 71 (223)
.+.-|...|+.-.. ...|+..|+ +-||++++++.-|.
T Consensus 27 ~~e~l~~~l~~i~~----~yGs~e~Yl~~~lgl~~~~i~~Lr 64 (68)
T PF13348_consen 27 RPEYLEAALDAIDE----RYGSVENYLREELGLSEEDIERLR 64 (68)
T ss_dssp -HHHHHHHHHHHHH----HHSSHHHHHHHT-T--HHHHHHHH
T ss_pred cHHHHHHHHHHHHH----HcCCHHHHHHHcCCCCHHHHHHHH
Confidence 45567777776655 356788999 67899999887663
No 83
>KOG3911 consensus Nucleolar protein NOP52/RRP1 [RNA processing and modification]
Probab=23.07 E-value=5.9e+02 Score=24.22 Aligned_cols=119 Identities=22% Similarity=0.277 Sum_probs=71.3
Q ss_pred HHHHHHHHhhccccccc-ccHHHHHHHhhHcC-C----CC---HHHHHHHHHHHHHHhCC--------------------
Q 027487 67 VRILMLAWKLKAVKLGY-FTQDEWETGLKTLQ-V----NN---LSKLKKAISELEKEVRT-------------------- 117 (223)
Q Consensus 67 ~~~L~La~~l~a~~mg~-~tr~eF~~G~~~l~-~----ds---i~~lk~~l~~l~~~l~~-------------------- 117 (223)
-.+=+|--++.+.+.-+ |++.+|+.-|+.|- | |- -+.|-..|..|.....+
T Consensus 26 rAlr~Lrkyi~ak~~k~~F~~~dflklWKGLfY~MWmqDkPllQeeLa~~laqLv~~f~~~~a~i~F~~~FwktM~rEW~ 105 (378)
T KOG3911|consen 26 RALRKLRKYISAKTQKEGFDQDDFLKLWKGLFYCMWMQDKPLLQEELADTLAQLVHIFTSTEAQILFVSAFWKTMCREWF 105 (378)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHhhHHHHhhcCCchHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhhhc
Confidence 34445555566666644 99999999998864 3 11 12333333333333211
Q ss_pred ------Cchh----HHHHHhHhhhccCccccccccHHHHHHHHHHhhC----C---------CchhhHHHHHHHHHhcCC
Q 027487 118 ------PPNF----ADFYSFAFRYHLTEEKQKNIDIETICELLNLVLG----P---------QFRRQVDLLIDYLKVQSN 174 (223)
Q Consensus 118 ------~~~F----k~~Y~f~F~f~k~~~~qK~L~le~Ai~~W~lll~----~---------~~~~~l~~w~~FL~~~~~ 174 (223)
...| |.+-+++|.+.+. ++=..+.--+||+.+.. + .| .+++.|++=|..- .
T Consensus 106 gIDr~RlDKflmLiRrvlr~~l~~Lk~----~~W~~~li~e~~~~~q~~~~~~~s~~np~Gi~f-Hf~dI~ldEL~kv-~ 179 (378)
T KOG3911|consen 106 GIDRLRLDKFLMLIRRVLRASLRVLKE----RNWEKDLIDEYLKVLQEWVLSPDSQSNPNGIKF-HFADILLDELDKV-G 179 (378)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH----cCchHHHHHHHHHHHHHhhcCCCCCCCCCccch-hHHHHHHHHHHHh-c
Confidence 1122 6677788888753 34444555578877763 1 13 4678888888643 4
Q ss_pred CccCChhhhhHHHH-Hhh
Q 027487 175 YKVINLDQWLGIFR-FCN 191 (223)
Q Consensus 175 ~k~IskD~W~~~l~-F~~ 191 (223)
...++.|+|+++++ |++
T Consensus 180 ~~e~~~~q~~~~~d~~~~ 197 (378)
T KOG3911|consen 180 GEELTADQNLLFIDPFCR 197 (378)
T ss_pred CCcchhhhhhcccCHHHH
Confidence 57899999998764 444
No 84
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=22.96 E-value=1.3e+02 Score=17.62 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=18.9
Q ss_pred HhhcCC-CCCCHHHHHHHHHHcCCCCCC
Q 027487 40 DKYANG-GIIDPDGIVTLCKDLELEYTD 66 (223)
Q Consensus 40 d~Y~~~-~~I~~dG~~~~~~dLgv~ped 66 (223)
.+|... ..+..+-+.++|+-||++++.
T Consensus 28 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 55 (56)
T smart00530 28 SRIENGKRKPSLETLKKLAKALGVSLDE 55 (56)
T ss_pred HHHHCCCCCCCHHHHHHHHHHhCCChhh
Confidence 344443 456788888888888888764
No 85
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=22.91 E-value=1.4e+02 Score=22.96 Aligned_cols=53 Identities=13% Similarity=0.330 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcC-------------CCccCChhhhhHHHHHhhhcCCCCCCCCCCCCCchhhHHHHH
Q 027487 162 VDLLIDYLKVQS-------------NYKVINLDQWLGIFRFCNEISFPDLENYDETQAWPLILDNFV 215 (223)
Q Consensus 162 l~~w~~FL~~~~-------------~~k~IskD~W~~~l~F~~~v~~~dls~YDe~~AWP~lIDeFV 215 (223)
+=.|++||.+.- ...-||.+.=.++++|++-+. .+-..-+..+.|...+|+=+
T Consensus 21 ~~eWLefLve~~G~~~~~~~L~YY~~igWISe~V~~~L~~~~~G~~-~~~~~~~~~~~~~Lt~~DH~ 86 (99)
T PF04659_consen 21 VFEWLEFLVERVGHNNAADALDYYESIGWISEEVREQLLKYLKGFK-YDHDDFEWKPSWKLTIDDHI 86 (99)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHcCCcCHHHHHHHHHHHhCCC-CCccccccCCCCCCCHHHHH
Confidence 345888887531 124689999999999998764 23332333788888888743
No 86
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=22.62 E-value=2.5e+02 Score=24.90 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=45.0
Q ss_pred HHHHHhhcCC--CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhh
Q 027487 36 ENFFDKYANG--GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLK 94 (223)
Q Consensus 36 ~~lFd~Y~~~--~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~ 94 (223)
...|.+|-.+ +.|+..-+-+++|-||-.-.++.+=-+.-.+--..-|.+|--||+--.+
T Consensus 102 ~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 102 ESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 5678888655 7899999999999999887777666666666666678888888876554
No 87
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=22.49 E-value=2e+02 Score=19.21 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHcCCCCCCHHHHHHHHhh-cccccccccHHHHHHHhhHcCCCCHHHHHHHHHHHH
Q 027487 49 DPDGIVTLCKDLELEYTDVRILMLAWKL-KAVKLGYFTQDEWETGLKTLQVNNLSKLKKAISELE 112 (223)
Q Consensus 49 ~~dG~~~~~~dLgv~ped~~~L~La~~l-~a~~mg~~tr~eF~~G~~~l~~dsi~~lk~~l~~l~ 112 (223)
+++.+.+++..+|+ +...-.....-+ |+..+-.+|.+.. +++|+.+....++.+..++
T Consensus 5 ~~~~v~~WL~~~gl--~~y~~~f~~~~i~g~~~L~~l~~~~L----~~lGI~~~~~r~kll~~i~ 63 (66)
T PF07647_consen 5 SPEDVAEWLKSLGL--EQYADNFRENGIDGLEDLLQLTEEDL----KELGITNLGHRRKLLSAIQ 63 (66)
T ss_dssp CHHHHHHHHHHTTC--GGGHHHHHHTTCSHHHHHTTSCHHHH----HHTTTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCc--HHHHHHHHHcCCcHHHHHhhCCHHHH----HHcCCCCHHHHHHHHHHHH
Confidence 46677888888887 333333333333 3355667777654 5788888877666655543
No 88
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=22.31 E-value=62 Score=29.37 Aligned_cols=63 Identities=22% Similarity=0.295 Sum_probs=44.7
Q ss_pred ccCccCCCcccHHHHHHHHHhhcCC-CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCCC
Q 027487 21 SSNARSAGKAKAKEIENFFDKYANG-GIIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQVN 99 (223)
Q Consensus 21 s~~~~~~~~~~~~~l~~lFd~Y~~~-~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~d 99 (223)
-|.+-.+.++++.=++.|||+|++. +. .+.+.||++ +...|+..++.-..|.|+ -|-.|||-
T Consensus 73 lg~~e~p~~pP~aYVe~LFD~~Ae~Fd~-------~LVdkL~Y~----vP~~l~emI~~~~~g~F~------~~lDLGCG 135 (287)
T COG4976 73 LGRGETPEKPPSAYVETLFDQYAERFDH-------ILVDKLGYS----VPELLAEMIGKADLGPFR------RMLDLGCG 135 (287)
T ss_pred hcCCCCCCCCchHHHHHHHHHHHHHHHH-------HHHHHhcCc----cHHHHHHHHHhccCCccc------eeeecccC
Confidence 3445555566777899999999985 43 356777776 235677778777777776 47788997
Q ss_pred C
Q 027487 100 N 100 (223)
Q Consensus 100 s 100 (223)
|
T Consensus 136 T 136 (287)
T COG4976 136 T 136 (287)
T ss_pred c
Confidence 6
No 89
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=22.24 E-value=2.4e+02 Score=19.28 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhH
Q 027487 49 DPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 49 ~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~ 95 (223)
+..-+.+++..++|++++--...|-..+.-..-|....+||+.=.+.
T Consensus 3 sf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 3 SFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 34567889999999999999999988888888899999999875544
No 90
>PF04337 DUF480: Protein of unknown function, DUF480; InterPro: IPR007432 This family consists of several proteins of uncharacterised function.; PDB: 3BZ6_A.
Probab=21.76 E-value=98 Score=25.78 Aligned_cols=56 Identities=14% Similarity=0.313 Sum_probs=38.8
Q ss_pred HHHHHHcCCCCCCHHHHHHHHhhccccccccc-HHHHHHHhhHcCCCCHHHHHHHHHHHHHH
Q 027487 54 VTLCKDLELEYTDVRILMLAWKLKAVKLGYFT-QDEWETGLKTLQVNNLSKLKKAISELEKE 114 (223)
Q Consensus 54 ~~~~~dLgv~ped~~~L~La~~l~a~~mg~~t-r~eF~~G~~~l~~dsi~~lk~~l~~l~~~ 114 (223)
.+||+-|++++....+|++..+=|..+.|++- |.+ +-...+++++....|..|...
T Consensus 78 Hr~~~~l~l~~~e~All~~LlLRGpQT~GELR~Rs~-----Rl~~F~d~~~Ve~~L~~L~~r 134 (148)
T PF04337_consen 78 HRFCNTLQLSPQELALLCLLLLRGPQTPGELRTRSE-----RLHEFADVAEVEAVLERLAER 134 (148)
T ss_dssp E-HHHHHT--HHHHHHHHHHHHH-SB-HHHHHHHHT-----TTS--SSHHHHHHHHHHHHHT
T ss_pred hhhhhhcCCCHHHHHHHHHHHHcCCCchhHHHhhhc-----cccCCCCHHHHHHHHHHHHhc
Confidence 37899999999999999999999999998862 222 224468888988888888654
No 91
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=21.24 E-value=97 Score=24.33 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHcCCCCCCHHHHHHHHhhcc-cccccccHHHHHHHhhHcCCCCHHHHHHHH
Q 027487 48 IDPDGIVTLCKDLELEYTDVRILMLAWKLKA-VKLGYFTQDEWETGLKTLQVNNLSKLKKAI 108 (223)
Q Consensus 48 I~~dG~~~~~~dLgv~ped~~~L~La~~l~a-~~mg~~tr~eF~~G~~~l~~dsi~~lk~~l 108 (223)
|.-.=+.+.++++||.+.|-.+=-.-....+ ..-|.++++.|.+.++..|.+ .+++++.|
T Consensus 84 I~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~~g~t-~~~~~~~l 144 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQQGMT-EEEFKEEL 144 (154)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcc-ccccchhh
Confidence 4445567788999999877555533333211 123889999999999988874 45555544
No 92
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=21.09 E-value=3.4e+02 Score=22.66 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=11.4
Q ss_pred CCCcccccCCCCCCC
Q 027487 1 MPRASSKRKSSAPQN 15 (223)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (223)
|.|-|++|+|...-.
T Consensus 1 M~rmh~~~kG~S~S~ 15 (151)
T PRK08561 1 MARMHTRRRGKSGST 15 (151)
T ss_pred CCCcCCCCCCCCCCC
Confidence 778899998865544
No 93
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=20.84 E-value=2e+02 Score=21.31 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHhhcCC----------------CCCCHHHHHHHHHHcCCCCCCHHHH
Q 027487 30 AKAKEIENFFDKYANG----------------GIIDPDGIVTLCKDLELEYTDVRIL 70 (223)
Q Consensus 30 ~~~~~l~~lFd~Y~~~----------------~~I~~dG~~~~~~dLgv~ped~~~L 70 (223)
.+.+...++|++|.+. .-|+..-+-+++..+|++++|+.=+
T Consensus 20 l~~~~a~kl~~~yg~~ai~~l~~nPY~L~~~i~gi~F~~aD~iA~~~g~~~~d~~Ri 76 (94)
T PF14490_consen 20 LSPKLAMKLYKKYGDDAIEILKENPYRLIEDIDGIGFKTADKIALKLGIEPDDPRRI 76 (94)
T ss_dssp --HHHHHHHHHHH-TTHHHHHHH-STCCCB-SSSSBHHHHHHHHHTTT--TT-HHHH
T ss_pred CCHHHHHHHHHHHhHHHHHHHHHChHHHHHHccCCCHHHHHHHHHHcCCCCCCHHHH
Confidence 3456778999999875 2466677788888999999987544
No 94
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S13 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S13 is known to be involved in binding fMet-tRNA and, hence, in the initiation of translation. It is a basic protein of 115 to 177 amino-acid residues that contains thee helices and a beta-hairpin in the core of the protein, forming a helix-two turns-helix (H2TH) motif, and a non-globular C-terminal extension. This family of ribosomal proteins is present in prokaryotes, eukaryotes and archaea [, ].; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3BBN_M 2QBB_M 3I1M_M 3OFP_M 3OFX_M 3OFO_M 1VS5_M 3OAQ_M 2QAL_M 3J18_M ....
Probab=20.75 E-value=3.9e+02 Score=20.38 Aligned_cols=78 Identities=15% Similarity=0.201 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcCC--CCHHHHHHHHHHHHHHhCCCchhHHH
Q 027487 47 IIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQV--NNLSKLKKAISELEKEVRTPPNFADF 124 (223)
Q Consensus 47 ~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~~--dsi~~lk~~l~~l~~~l~~~~~Fk~~ 124 (223)
-||.-=..+.|..|||+|. ..+|.+|.+++..--..+.- -.-.+|+..+..-.+.|.+-..++-
T Consensus 22 GIG~~~A~~Ic~~lgi~~~-------------~~~~~Ls~~~i~~l~~~i~~~~~i~~~L~~~~~~~i~rl~~i~syRG- 87 (107)
T PF00416_consen 22 GIGRRKAKQICKKLGINPN-------------KKVGDLSDEQIDKLRKIIEKNHLIENDLKRQVRENIKRLKKIKSYRG- 87 (107)
T ss_dssp TBCHHHHHHHHHHTTS-SS-------------SBTTTSTHHHHHHHHHHHHTHSTCHHHHHHHHHHHHHHHHHHTTHHH-
T ss_pred ccCHHHHHHHHHHcCCChh-------------hhcccCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhc-
Confidence 3778888899999999998 78899998877655444322 3345566665544444422222322
Q ss_pred HHhHhhhccCcccccc
Q 027487 125 YSFAFRYHLTEEKQKN 140 (223)
Q Consensus 125 Y~f~F~f~k~~~~qK~ 140 (223)
+++..++-. .|||+
T Consensus 88 ~RH~~gLpv--RGQRT 101 (107)
T PF00416_consen 88 IRHRKGLPV--RGQRT 101 (107)
T ss_dssp HHHHHTSBS--SSSTS
T ss_pred chhhCCCCC--CCCCC
Confidence 455555543 46775
No 95
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=20.72 E-value=93 Score=17.96 Aligned_cols=16 Identities=19% Similarity=0.381 Sum_probs=13.9
Q ss_pred CCCCHHHHHHHHHHcC
Q 027487 46 GIIDPDGIVTLCKDLE 61 (223)
Q Consensus 46 ~~I~~dG~~~~~~dLg 61 (223)
+.|+.+|+..+|+.|.
T Consensus 12 N~i~~~G~~~L~~~L~ 27 (28)
T smart00368 12 NKLGDEGARALAEALK 27 (28)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 6899999999998774
No 96
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=20.69 E-value=2.7e+02 Score=25.35 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHcCCCCCCH-H-------HHHHHHhhcccccccccHH
Q 027487 49 DPDGIVTLCKDLELEYTDV-R-------ILMLAWKLKAVKLGYFTQD 87 (223)
Q Consensus 49 ~~dG~~~~~~dLgv~ped~-~-------~L~La~~l~a~~mg~~tr~ 87 (223)
-++++..+.+.+.-.|++. . -=.+.-.|..|.+| ++|+
T Consensus 114 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~P~lG-~~Re 159 (293)
T PF09712_consen 114 PLDNWQDFFSSLSPDPEDFLEAFWKEQYRETLGRWLQMPALG-PSRE 159 (293)
T ss_pred HHHHHHHHHHhcccCchhhHhhhHHHHHHHHHHHHHcCCcCC-cCHH
Confidence 3566788888776666664 2 22455567778876 3454
No 97
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=20.66 E-value=1.9e+02 Score=23.80 Aligned_cols=91 Identities=10% Similarity=0.070 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhcCC---------------CCCCHHHHHHHHHHcCCCCCCHHHHHHHHhhc-ccccccccHHHHHHHhhH
Q 027487 32 AKEIENFFDKYANG---------------GIIDPDGIVTLCKDLELEYTDVRILMLAWKLK-AVKLGYFTQDEWETGLKT 95 (223)
Q Consensus 32 ~~~l~~lFd~Y~~~---------------~~I~~dG~~~~~~dLgv~ped~~~L~La~~l~-a~~mg~~tr~eF~~G~~~ 95 (223)
..++.++.++|.+. +.|..+.+...++-|||.+.++.-++=.|-+= -...|...
T Consensus 8 ~~~i~~ii~~y~~~~~~li~~L~~vQ~~~G~Ip~e~~~~iA~~l~v~~~~V~~vatFY~~f~~~p~Gk~~---------- 77 (156)
T PRK05988 8 AARIAAIIAEHKHLEGALLPILHAIQDEFGYVPEDAVPVIAEALNLSRAEVHGVITFYHDFRTHPPGRHV---------- 77 (156)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHhhccCCCCCCCEE----------
Confidence 44678888888754 68999999999999999998877666655442 22345544
Q ss_pred cC-CCCH----HHHHHHHHHHHHHhC-------CCchhHHHHHhHhhhc
Q 027487 96 LQ-VNNL----SKLKKAISELEKEVR-------TPPNFADFYSFAFRYH 132 (223)
Q Consensus 96 l~-~dsi----~~lk~~l~~l~~~l~-------~~~~Fk~~Y~f~F~f~ 132 (223)
+. |.++ ..=...+..|.+.|. .+..|.---..|++-+
T Consensus 78 I~VC~~~~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~~~~ClG~C 126 (156)
T PRK05988 78 LKLCRAEACQAMGGDALAAHAKARLGIDFHQTTADGAVTLEPVYCLGLC 126 (156)
T ss_pred EEEeCCchhhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEeeeecCcc
Confidence 32 3332 223455666666652 2344655555555555
No 98
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=20.47 E-value=4.6e+02 Score=21.15 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=22.5
Q ss_pred ccccHHHHHHHhhHcCCC-CHHHHHHHHHHHHHHh
Q 027487 82 GYFTQDEWETGLKTLQVN-NLSKLKKAISELEKEV 115 (223)
Q Consensus 82 g~~tr~eF~~G~~~l~~d-si~~lk~~l~~l~~~l 115 (223)
-+|...+|++-+.++--+ +-...|..+-.+.+..
T Consensus 74 ~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W 108 (144)
T cd03568 74 QEVASRDFTQELKKLINDRVHPTVKEKLREVVKQW 108 (144)
T ss_pred HHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 688999999999886544 4455555555444443
No 99
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=20.36 E-value=3.8e+02 Score=21.25 Aligned_cols=56 Identities=11% Similarity=0.101 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHcCCCCCCHHHHHHHHhhcccccccccHHHHHHHhhHcC--CCCHHHHHHHHHHHHHHh
Q 027487 47 IIDPDGIVTLCKDLELEYTDVRILMLAWKLKAVKLGYFTQDEWETGLKTLQ--VNNLSKLKKAISELEKEV 115 (223)
Q Consensus 47 ~I~~dG~~~~~~dLgv~ped~~~L~La~~l~a~~mg~~tr~eF~~G~~~l~--~dsi~~lk~~l~~l~~~l 115 (223)
-||.-=..+.|..|||+|. ..+|.+|.++...--..+. -..-.+|+..+.+-.+.|
T Consensus 24 GIG~~~a~~i~~~lgi~~~-------------~~~~~L~~~qi~~l~~~i~~~~~i~~dL~~~~~~dI~rl 81 (122)
T PRK05179 24 GIGRTRAKEILAAAGIDPD-------------TRVKDLTDEELDKIREEIDKNYKVEGDLRREVSMNIKRL 81 (122)
T ss_pred cccHHHHHHHHHHhCcCcc-------------cccccCCHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 3777778899999999998 7889999888766554443 223346666665444444
Done!