BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027488
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q38732|DAG_ANTMA DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1
Length = 230
Score = 285 bits (728), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/190 (75%), Positives = 160/190 (84%), Gaps = 5/190 (2%)
Query: 36 PSRAHSRSILTVRAGATDSEYSSKRSSSNEPRE----TIMLPGCDYNHWLIVMEFPKDPA 91
P ++ S + TVRA TD EYSS+R+++N TIMLPGCDYNHWLIVMEFPKDPA
Sbjct: 42 PIKSRSAAYPTVRA-LTDGEYSSRRNNNNNNSGEERETIMLPGCDYNHWLIVMEFPKDPA 100
Query: 92 PTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWV 151
PTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFKGLPGVLWV
Sbjct: 101 PTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWV 160
Query: 152 LPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTR 211
LPDSYIDVKNKDYGGDKYVNGEIIPC YPTYQP + + SKY SK Y R+RDGPPAE+R
Sbjct: 161 LPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQSRSSKYKSKAYVRQRDGPPAEQRRP 220
Query: 212 QAAGQSESAS 221
+ ES++
Sbjct: 221 KQEATPESST 230
>sp|Q9LKA5|UMP1_ARATH Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis
thaliana GN=At3g15000 PE=1 SV=1
Length = 395
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 112/181 (61%), Gaps = 8/181 (4%)
Query: 1 MATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVRAGATDSEYSSKR 60
++ L+ S +S PL S P +L L P + S +++V+ +T + SS
Sbjct: 18 LSFLFTRSFASSAPLAKS-PASSL-LSRSRPLVAAFSSVFRGGLVSVKGLSTQATSSSLN 75
Query: 61 S-----SSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEA 115
S+ P+ETI+L GCD+ HWL+V+E P+ PTR+++I++Y+ TLA ++GS +EA
Sbjct: 76 DPNPNWSNRPPKETILLDGCDFEHWLVVVEPPQG-EPTRDEIIDSYIKTLAQIVGSEDEA 134
Query: 116 KKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEII 175
+ +Y+ ST Y F VSE+ S K K L V WVLPDSY+DV+NKDYGG+ +++G+ +
Sbjct: 135 RMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAV 194
Query: 176 P 176
P
Sbjct: 195 P 195
>sp|B9LQZ7|SYS_HALLT Serine--tRNA ligase OS=Halorubrum lacusprofundi (strain ATCC 49239
/ DSM 5036 / JCM 8891 / ACAM 34) GN=serS PE=3 SV=1
Length = 456
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 149 LWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPNKRKES 190
LW+LP + + V N D+ + GE +P Y Y PN R+E+
Sbjct: 236 LWLLPTAEVPVTN--LHRDEILLGEDLPLKYQAYTPNFRQEA 275
>sp|Q2IA00|SPEF2_PIG Sperm flagellar protein 2 OS=Sus scrofa GN=SPEF2 PE=2 SV=1
Length = 1812
Score = 31.6 bits (70), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 96 QMIE-TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEK---------FKGL 145
++IE +Y+N++ TVL + E + + A+ T TGFQ + ++ F L
Sbjct: 1025 KLIENSYINSIKTVLRHLREGQHTVLAYLYDTRTGFQQFLRRPDHKQNFVSQWQADFNSL 1084
Query: 146 PGVLW 150
P LW
Sbjct: 1085 PDDLW 1089
>sp|Q9C5U1|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1
Length = 1036
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 112 MEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDY 164
M++ KK A + + F TVS E G+ G+L +L D+ +DV +DY
Sbjct: 437 MKQLKKKAEA-ADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTELDVTQQDY 488
>sp|Q89FG1|PQQE_BRAJA Coenzyme PQQ synthesis protein E OS=Bradyrhizobium japonicum
(strain USDA 110) GN=pqqE PE=3 SV=2
Length = 380
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 115 AKKNMYAFSTTTYTGFQCT-VSEETSEKFKGLPGVLWVLPDSYIDVKNKDYG--GDKYVN 171
A KN A T +CT + EE E+ KG + +V+PD Y K G G ++ N
Sbjct: 197 ALKNRAALMPTVAQLDECTRLVEEARERLKGRLSIDYVVPDYYALRPKKCMGGWGRQFFN 256
Query: 172 ----GEIIPC 177
G+++PC
Sbjct: 257 ISPAGKVLPC 266
>sp|A1SLQ7|RRF_NOCSJ Ribosome-recycling factor OS=Nocardioides sp. (strain BAA-499 /
JS614) GN=frr PE=3 SV=1
Length = 185
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 159 VKNKDYGGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERRTRQAAGQ 216
+++ D G + +G++I C +P +RKE Y+ + +G A R R+ A Q
Sbjct: 82 IRDSDLGVNPADDGKVIRCVFPELTEERRKE--YIKISRHKAEEGRVAVRNLRRTAKQ 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,042,904
Number of Sequences: 539616
Number of extensions: 3477063
Number of successful extensions: 6444
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 6438
Number of HSP's gapped (non-prelim): 16
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)