Query 027488
Match_columns 222
No_of_seqs 160 out of 539
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 17:58:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027488.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027488hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w2n_P Proprotein convertase s 99.5 3.4E-15 1.2E-19 116.3 3.9 75 78-159 38-113 (114)
2 3cnq_P Subtilisin BPN'; unclea 99.1 1.1E-10 3.7E-15 84.0 7.0 69 78-162 9-78 (80)
3 2qtw_A Proprotein convertase s 99.1 1E-10 3.4E-15 92.9 5.6 75 78-159 48-123 (124)
4 1v5i_B POIA1, IA-1=serine prot 98.4 7.1E-07 2.4E-11 64.5 7.9 70 78-159 3-75 (76)
5 2p4e_P Proprotein convertase s 97.7 1.7E-05 5.9E-10 78.3 3.8 77 78-161 76-153 (692)
6 3t41_A Epidermin leader peptid 96.5 0.0036 1.2E-07 57.0 6.0 74 68-161 35-110 (471)
7 3afg_A Subtilisin-like serine 95.6 0.014 4.7E-07 55.3 5.8 42 118-161 61-114 (539)
8 2z30_B TK-subtilisin; thermoco 94.0 0.028 9.5E-07 39.2 2.5 42 115-158 21-63 (65)
9 2z2z_A TK-subtilisin precursor 93.7 0.025 8.4E-07 50.8 2.1 42 118-161 25-67 (395)
10 3ftj_A MACB, macrolide export 23.3 45 0.0015 26.1 2.4 24 132-155 33-56 (226)
No 1
>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P
Probab=99.53 E-value=3.4e-15 Score=116.35 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=62.9
Q ss_pred ceEEEEecCCCCCCCChhhhHHHHHHHHHHHhCChHhhhcce-eeeeccceeeeecccCHHHHHHhhCCCCeEEEeCCCC
Q 027488 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY 156 (222)
Q Consensus 78 ktYIVyMd~p~~p~~s~~~v~ssh~~~LASVLGS~eeAk~~I-YSYs~hsfnGFAArLTeEEAekLs~~PGVVSVfPDs~ 156 (222)
+.|||+|+.... ...+..|++||.+++++ +.+...| |+|+ ++|+||+|+|+++|+++|+++|+|++|+||+.
T Consensus 38 ~~YIV~lk~~~~-----~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~-~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~ 110 (114)
T 2w2n_P 38 GTYVVVLKEETH-----LSQSERTARRLQAQAAR-RGYLTKILHVFH-GLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 110 (114)
T ss_dssp EEEEEEECTTCC-----HHHHHHHHHHHHHHHHH-TTCCCEEEEEEC-SSSSEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred CcEEEEECCCCC-----HHHHHHHHHHHHHHhhh-cccCCceEEEec-ccceEEEEEcCHHHHHHHHcCCCccEEEeCce
Confidence 689999975421 34577999999999864 2244567 9999 99999999999999999999999999999998
Q ss_pred ccc
Q 027488 157 IDV 159 (222)
Q Consensus 157 ~kL 159 (222)
++.
T Consensus 111 v~~ 113 (114)
T 2w2n_P 111 VFA 113 (114)
T ss_dssp EEE
T ss_pred Eec
Confidence 764
No 2
>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B
Probab=99.13 E-value=1.1e-10 Score=84.05 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=52.3
Q ss_pred ceEEEEecCCCCCCCChhhhHHHHHHHHHHHhCChHhhhcce-eeeeccceeeeecccCHHHHHHhhCCCCeEEEeCCCC
Q 027488 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY 156 (222)
Q Consensus 78 ktYIVyMd~p~~p~~s~~~v~ssh~~~LASVLGS~eeAk~~I-YSYs~hsfnGFAArLTeEEAekLs~~PGVVSVfPDs~ 156 (222)
+.|||.+...... . ..+..+..-. ...| |+|+ + |+||+|+|+++++++|+++|+|..|.||..
T Consensus 9 ~~YIV~~k~~~~~-----~---~~~~~~~~~~------g~~i~~~y~-~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~ 72 (80)
T 3cnq_P 9 KKYIVGFKQGFKS-----C---AKKEDVISEK------GGKLQKCFK-Y-VDAASATLNEKAVEELKKDPSVAYVEEDKL 72 (80)
T ss_dssp CEEEEEECTTCCS-----H---HHHHHHHHTT------TCEEEEECS-S-SSEEEEECCHHHHHHHHTCTTEEEEEECCE
T ss_pred CCEEEEECCCCCh-----H---HHHHHHHHHc------CCcceEEEc-c-cEEEEEEcCHHHHHHHHhCCCccEEEeCcE
Confidence 6899999754221 1 1122222222 2356 9999 8 999999999999999999999999999999
Q ss_pred cccCCC
Q 027488 157 IDVKNK 162 (222)
Q Consensus 157 ~kLhTk 162 (222)
++++|-
T Consensus 73 v~~~tt 78 (80)
T 3cnq_P 73 YRALSA 78 (80)
T ss_dssp EEECCC
T ss_pred EEEeee
Confidence 998863
No 3
>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P
Probab=99.08 E-value=1e-10 Score=92.90 Aligned_cols=75 Identities=17% Similarity=0.163 Sum_probs=57.0
Q ss_pred ceEEEEecCCCCCCCChhhhHHHHHHHHHHHhCChHhhhcce-eeeeccceeeeecccCHHHHHHhhCCCCeEEEeCCCC
Q 027488 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY 156 (222)
Q Consensus 78 ktYIVyMd~p~~p~~s~~~v~ssh~~~LASVLGS~eeAk~~I-YSYs~hsfnGFAArLTeEEAekLs~~PGVVSVfPDs~ 156 (222)
+.|||.|..... ...+..|.+|+.+++... .....| |+|+ +.|+||+|+|+++++++|+++|+|++|.||..
T Consensus 48 ~~YIV~~K~~~~-----~~~~~~~~~~l~~~~~~r-~~g~~i~~~Y~-~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~ 120 (124)
T 2qtw_A 48 GTYVVVLKEETH-----LSQSERTARRLQAQAARR-GYLTKILHVFH-GLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 120 (124)
T ss_dssp EEEEEEECTTCC-----HHHHHHHHHHHHHHHHHT-TCCCEEEEEEC-SSSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred CCEEEEECCCCC-----HHHHHHHHHHHHHHHhhc-ccCCceEEEec-ccceEEEEEcCHHHHHHHHcCCCCcEEEeCce
Confidence 689999975421 245667777776643100 011256 9999 99999999999999999999999999999987
Q ss_pred ccc
Q 027488 157 IDV 159 (222)
Q Consensus 157 ~kL 159 (222)
++.
T Consensus 121 v~a 123 (124)
T 2qtw_A 121 VFA 123 (124)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
No 4
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=98.44 E-value=7.1e-07 Score=64.51 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=54.9
Q ss_pred ceEEEEecCCCCCCCChhhhHHHHHHHHHHHhCChHhhhcce-eeeeccceeeeecccCHHHHHHhhCC--CCeEEEeCC
Q 027488 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGL--PGVLWVLPD 154 (222)
Q Consensus 78 ktYIVyMd~p~~p~~s~~~v~ssh~~~LASVLGS~eeAk~~I-YSYs~hsfnGFAArLTeEEAekLs~~--PGVVSVfPD 154 (222)
..|||.|.... ....++.|..|+...- ..| +.|....|+||+|.|++++++.|+.. |.|..|=+|
T Consensus 3 ~sYIV~lk~~~-----~~~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D 70 (76)
T 1v5i_B 3 GKFIVIFKNDV-----SEDKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (76)
T ss_dssp EEEEEEECTTC-----CHHHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred ceEEEEECCCC-----CHHHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence 57999995421 2346777888876642 257 99933899999999999999999999 889999999
Q ss_pred CCccc
Q 027488 155 SYIDV 159 (222)
Q Consensus 155 s~~kL 159 (222)
+.+.+
T Consensus 71 ~~v~~ 75 (76)
T 1v5i_B 71 HVAHA 75 (76)
T ss_dssp CEEEC
T ss_pred cEEeC
Confidence 87654
No 5
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Probab=97.70 E-value=1.7e-05 Score=78.30 Aligned_cols=77 Identities=17% Similarity=0.169 Sum_probs=55.6
Q ss_pred ceEEEEecCCCCCCCChhhhHHHHHHHHHHHhCChHhhhcce-eeeeccceeeeecccCHHHHHHhhCCCCeEEEeCCCC
Q 027488 78 NHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSY 156 (222)
Q Consensus 78 ktYIVyMd~p~~p~~s~~~v~ssh~~~LASVLGS~eeAk~~I-YSYs~hsfnGFAArLTeEEAekLs~~PGVVSVfPDs~ 156 (222)
..|||.|..... ...++.+..+|...+... .....| |+|+ +.|+||+++|+++++++|+++|+|.+|.||..
T Consensus 76 g~YIV~lk~~~~-----~~~~~~~~~~l~a~~~~~-g~~~~v~~~y~-~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~ 148 (692)
T 2p4e_P 76 GTYVVVLKEETH-----LSQSERTARRLQAQAARR-GYLTKILHVFH-GLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 148 (692)
T ss_dssp EEEEEEECTTCC-----HHHHHHHHHHHHHHHHHT-TCCCEEEEEEC-SSSCEEEEECCGGGHHHHHTSTTEEEEEEEEE
T ss_pred CcEEEEECCCCC-----HHHHHHHHHHHHHHHhhc-ccccceeeEee-ccccEEEEEeCHHHHHHHHcCCCceEEEeccc
Confidence 489999975321 234555666665533100 011245 9999 99999999999999999999999999999997
Q ss_pred cccCC
Q 027488 157 IDVKN 161 (222)
Q Consensus 157 ~kLhT 161 (222)
+..++
T Consensus 149 v~~~~ 153 (692)
T 2p4e_P 149 VFAQS 153 (692)
T ss_dssp EEEC-
T ss_pred cccCC
Confidence 65543
No 6
>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A
Probab=96.48 E-value=0.0036 Score=56.99 Aligned_cols=74 Identities=8% Similarity=0.147 Sum_probs=48.2
Q ss_pred ccccccCCCcceEEEEecCCCCCCCChhhhHHHHHHHHHHHhCChHhhhcce-eeeeccceeeeecccCHHHHHHhhC-C
Q 027488 68 ETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNM-YAFSTTTYTGFQCTVSEETSEKFKG-L 145 (222)
Q Consensus 68 ~~~l~~g~d~ktYIVyMd~p~~p~~s~~~v~ssh~~~LASVLGS~eeAk~~I-YSYs~hsfnGFAArLTeEEAekLs~-~ 145 (222)
+-+.+.+.+.+.|||.+... ..-.+.+. ...-.+ |.|. .++||+++|+++++++|++ +
T Consensus 35 ~~l~~~~~~~~~yiv~~~~~-----------~~~~~~~~-------~~g~~v~~~~~--~~~~~~~~~~~~~~~~L~~~~ 94 (471)
T 3t41_A 35 ENLYFQGSEELYYSVEYKNT-----------ATFNKLVK-------KKSLNVVYNIP--ELHVAQIKMTKMHANALANYK 94 (471)
T ss_dssp --------CCEEEEEEESCH-----------HHHHHHHH-------HHTCEEEEEEG--GGTEEEEEECHHHHHHHHTCT
T ss_pred ccceecCCCceEEEEEcCCH-----------HHHHHHHH-------hCCCEEEEecC--CccEEEEEeCHHHHHHHHhcC
Confidence 34556777778899965421 11122221 122234 8885 5999999999999999999 9
Q ss_pred CCeEEEeCCCCcccCC
Q 027488 146 PGVLWVLPDSYIDVKN 161 (222)
Q Consensus 146 PGVVSVfPDs~~kLhT 161 (222)
|+|.+|.|+..+.+++
T Consensus 95 p~V~~v~~~~~~~~~~ 110 (471)
T 3t41_A 95 NDIKYINATCSTCITS 110 (471)
T ss_dssp TTEEEEEECCSSCBCC
T ss_pred CCCcEEEecceecccc
Confidence 9999999999887764
No 7
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}
Probab=95.63 E-value=0.014 Score=55.28 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=37.1
Q ss_pred ce-eeeeccceeeeecccCHHHHHHh-----------hCCCCeEEEeCCCCcccCC
Q 027488 118 NM-YAFSTTTYTGFQCTVSEETSEKF-----------KGLPGVLWVLPDSYIDVKN 161 (222)
Q Consensus 118 ~I-YSYs~hsfnGFAArLTeEEAekL-----------s~~PGVVSVfPDs~~kLhT 161 (222)
.+ |+|. .|+||+++|+++++++| +++|+|.+|.||..+++..
T Consensus 61 ~v~~~~~--~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~ 114 (539)
T 3afg_A 61 KIKYNYH--IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAV 114 (539)
T ss_dssp EEEEECS--SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-
T ss_pred eEEEEee--eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccC
Confidence 45 9986 69999999999999999 8999999999999887754
No 8
>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B
Probab=94.04 E-value=0.028 Score=39.19 Aligned_cols=42 Identities=24% Similarity=0.267 Sum_probs=36.5
Q ss_pred hhcce-eeeeccceeeeecccCHHHHHHhhCCCCeEEEeCCCCcc
Q 027488 115 AKKNM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYID 158 (222)
Q Consensus 115 Ak~~I-YSYs~hsfnGFAArLTeEEAekLs~~PGVVSVfPDs~~k 158 (222)
..-.| |.|. .++|++|.|+++.+++|++.|||..|-+|....
T Consensus 21 ~gG~i~~~~~--~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 21 IGGHIVYQFK--LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp GTCEEEEECS--SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred CCCEEEEEec--CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 34467 8886 799999999999999999999999999998653
No 9
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A
Probab=93.72 E-value=0.025 Score=50.82 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=37.9
Q ss_pred ce-eeeeccceeeeecccCHHHHHHhhCCCCeEEEeCCCCcccCC
Q 027488 118 NM-YAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKN 161 (222)
Q Consensus 118 ~I-YSYs~hsfnGFAArLTeEEAekLs~~PGVVSVfPDs~~kLhT 161 (222)
.+ |.|. .++||+++|+++++++|+.+|+|.+|.||..+.+++
T Consensus 25 ~v~~~~~--~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~ 67 (395)
T 2z2z_A 25 HIVYQFK--LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLG 67 (395)
T ss_dssp EEEEECS--SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECC
T ss_pred EEEEEec--cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccC
Confidence 45 8887 499999999999999999999999999999987764
No 10
>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB; macrolide-specific pump, ABC-type transporter; 2.00A {Actinobacillus actinomycetemcomitans}
Probab=23.33 E-value=45 Score=26.09 Aligned_cols=24 Identities=8% Similarity=0.099 Sum_probs=21.3
Q ss_pred cccCHHHHHHhhCCCCeEEEeCCC
Q 027488 132 CTVSEETSEKFKGLPGVLWVLPDS 155 (222)
Q Consensus 132 ArLTeEEAekLs~~PGVVSVfPDs 155 (222)
..||++++++|+++|||..|-|-.
T Consensus 33 ~~lt~~d~~~l~~~p~V~~v~~~~ 56 (226)
T 3ftj_A 33 QNLKISDANTLSKQSYIQSVTPNT 56 (226)
T ss_dssp CCCBHHHHHHHHTSTTEEEEEEEE
T ss_pred CCCCHHHHHHHhcCCCceEEEEEE
Confidence 569999999999999999998854
Done!