BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027489
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 197 bits (502), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 90/135 (66%), Positives = 107/135 (79%), Gaps = 1/135 (0%)
Query: 80 DEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPA 139
D +T + +QQTM RIKDPK SLDFY+RVLG++LL++LDFP MKFSLYFL YED P
Sbjct: 24 DPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPK 83
Query: 140 DPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF 199
D ++T WTF + AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RF
Sbjct: 84 DKSEKTAWTFSRKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 142
Query: 200 ERLGVEFAKKPDGGK 214
E LGV+F KKPD GK
Sbjct: 143 EELGVKFVKKPDDGK 157
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 187 bits (474), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 103/135 (76%), Gaps = 1/135 (0%)
Query: 80 DEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPA 139
D +T + +QQTM R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P
Sbjct: 23 DPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPK 82
Query: 140 DPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF 199
+ ++ W + AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RF
Sbjct: 83 EKDEKIAWALSRKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 141
Query: 200 ERLGVEFAKKPDGGK 214
E LGV+F KKPD GK
Sbjct: 142 EELGVKFVKKPDDGK 156
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 187 bits (474), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 103/135 (76%), Gaps = 1/135 (0%)
Query: 80 DEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPA 139
D +T + +QQTM R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P
Sbjct: 27 DPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPK 86
Query: 140 DPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF 199
+ ++ W + AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RF
Sbjct: 87 EKDEKIAWALSRKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 145
Query: 200 ERLGVEFAKKPDGGK 214
E LGV+F KKPD GK
Sbjct: 146 EELGVKFVKKPDDGK 160
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 103/135 (76%), Gaps = 1/135 (0%)
Query: 80 DEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPA 139
D +T + +Q+TM R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P
Sbjct: 23 DPSTKDFLLQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPK 82
Query: 140 DPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF 199
+ ++ W + AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RF
Sbjct: 83 EKDEKIAWALSRKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 141
Query: 200 ERLGVEFAKKPDGGK 214
E LGV+F KKPD GK
Sbjct: 142 EELGVKFVKKPDDGK 156
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 25/130 (19%)
Query: 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVW 147
+ TM R+ D + S+DFY++VLGM LL+ + PE K+SL F+GY P
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGY-----GPET------- 50
Query: 148 TFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFA 207
+ A IELT+NWG + Y G + +GHI ++VD+ +ACE+ + G
Sbjct: 51 ---EEAVIELTYNWGVDK------YELGTA----YGHIALSVDNAAEACEKIRQNGGNVT 97
Query: 208 KKPDGGKAGS 217
++ K G+
Sbjct: 98 REAGPVKGGT 107
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 25/105 (23%)
Query: 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVW 147
M TM R+ D S+ FY+ LGM +L++ D PE K++L FLGY S+
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSS---------- 58
Query: 148 TFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDV 192
+ELT+N+G S +GHI I V+DV
Sbjct: 59 -----TVLELTYNYGVTS----------YKHDEAYGHIAIGVEDV 88
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 90 QTMFRIKDPKVSLDFYSRVLGM 111
QT+F+I D V L +Y+ +LGM
Sbjct: 115 QTLFKIHDKDVPLSYYTGILGM 136
>pdb|4EGV|A Chain A, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|B Chain B, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|C Chain C, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|D Chain D, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|E Chain E, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|F Chain F, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
Length = 520
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 145 TVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGI 187
V FG T L H E+ PD +G E RG+G+ GI
Sbjct: 136 VVLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGI 178
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 80 DEATNGYFMQQTMFR--------IKDPKVSLDFYSRVLGMSLL------KRLDFPEMKFS 125
D T + Q + R +K K + FYS++LGM ++ K L F + KF+
Sbjct: 12 DLGTENLYFQSMLIRRLDHIVMTVKSIKDTTMFYSKILGMEVMTFKEDRKALCFGDQKFN 71
Query: 126 LYFLG--YEDTASAPA 139
L+ +G +E A+ P
Sbjct: 72 LHEVGKEFEPKAAHPV 87
>pdb|2WL9|A Chain A, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|B Chain B, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|C Chain C, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|D Chain D, Crystal Structure Of Catechol 2,3-Dioxygenase
Length = 305
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 177 SEPRGFGHIGITVDDVYKACERFERLGVEFAKK-----PDG--GKAGSIHCS 221
+E +G GHI I DDV +A + LG+E A + P+G G +HC+
Sbjct: 142 TEGQGLGHIIIREDDVEEATRFYRLLGLEGAVEYKFALPNGAVGTPVFMHCN 193
>pdb|1W3A|A Chain A, Three Dimensional Structure Of A Novel Pore-Forming
Lectin From The Mushroom Laetiporus Sulphureus
pdb|1W3F|A Chain A, Crystal Structure Of The Hemolytic Lectin From The
Mushroom Laetiporus Sulphureus Complexed With
N-Acetyllactosamine In The Gamma Motif
pdb|1W3G|A Chain A, Hemolytic Lectin From The Mushroom Laetiporus Sulphureus
Complexed With Two N-Acetyllactosamine Molecules
Length = 315
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 55 FRLLSMASSE---PKESPANNPGLHTARDEATNGYF 87
FRLL AS + + SP+ + GL D+AT+ YF
Sbjct: 13 FRLLGFASRQVIFARNSPSPDVGLSPVNDQATDQYF 48
>pdb|2Y9F|A Chain A, High-Resolution Structural Insights On The Sugar-
Recognition And Fusion Tag Properties Of A Versatile B-
Trefoil Lectin Domain
pdb|2Y9G|A Chain A, High-Resolution Structural Insights On The
Sugar-Recognition And Fusion Tag Properties Of A
Versatile B-Trefoil Lectin Domain
Length = 150
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 55 FRLLSMASSE---PKESPANNPGLHTARDEATNGYF 87
FRLL AS + + SP+ + GL D+AT+ YF
Sbjct: 13 FRLLGFASRQVIFARNSPSPDVGLSPVNDQATDQYF 48
>pdb|2WL3|A Chain A, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|B Chain B, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|C Chain C, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|D Chain D, Crystal Structure Of Catechol 2,3-Dioxygenase
Length = 305
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 177 SEPRGFGHIGITVDDVYKACERFERLGVEFAKK-----PDGGKAGSI--HCS 221
+E +G GHI I DDV +A + LG+E A + P+G + HC+
Sbjct: 142 TEGQGLGHIIIREDDVEEATRFYRLLGLEGAVEYKFALPNGAVGTPVFXHCN 193
>pdb|3TJZ|B Chain B, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|E Chain E, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 355
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 72 NPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLY--FL 129
N G H EAT +F +F+ DP + Y + MS + D + SL
Sbjct: 56 NQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE-DVIIVTSSLTKDMT 114
Query: 130 GYEDTASAPA 139
G ED+ PA
Sbjct: 115 GKEDSYRGPA 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,053,185
Number of Sequences: 62578
Number of extensions: 267071
Number of successful extensions: 567
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 22
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)