Query 027489
Match_columns 222
No_of_seqs 208 out of 1105
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 10:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027489.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027489hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02367 lactoylglutathione ly 100.0 3.4E-42 7.5E-47 297.9 20.8 209 6-221 1-209 (233)
2 KOG2944 Glyoxalase [Carbohydra 100.0 2.1E-35 4.6E-40 239.5 9.1 154 67-221 2-155 (170)
3 PLN03042 Lactoylglutathione ly 99.9 1.5E-26 3.2E-31 194.7 19.4 161 60-221 1-161 (185)
4 cd08358 Glo_EDI_BRP_like_21 Th 99.7 2.6E-16 5.5E-21 125.2 13.5 103 86-221 1-114 (127)
5 TIGR00068 glyox_I lactoylgluta 99.7 2.7E-15 5.8E-20 120.3 15.8 107 79-210 9-115 (150)
6 cd07233 Glyoxalase_I Glyoxalas 99.6 2.1E-14 4.5E-19 108.9 14.8 110 88-221 1-110 (121)
7 PRK10291 glyoxalase I; Provisi 99.6 1.7E-14 3.7E-19 112.2 13.5 105 92-221 1-107 (129)
8 cd08353 Glo_EDI_BRP_like_7 Thi 99.6 3.8E-14 8.2E-19 111.4 14.5 115 86-221 2-128 (142)
9 PF13669 Glyoxalase_4: Glyoxal 99.6 1.8E-14 3.9E-19 109.9 10.6 107 89-220 1-109 (109)
10 cd07241 Glo_EDI_BRP_like_3 Thi 99.6 5.4E-14 1.2E-18 106.7 12.9 101 87-212 1-104 (125)
11 PRK11478 putative lyase; Provi 99.5 3.8E-13 8.3E-18 103.5 14.0 100 85-210 4-104 (129)
12 cd08342 HPPD_N_like N-terminal 99.5 2.2E-13 4.8E-18 107.4 12.6 109 88-221 1-110 (136)
13 TIGR03081 metmalonyl_epim meth 99.5 1.2E-13 2.6E-18 105.7 10.5 112 87-221 1-114 (128)
14 TIGR03645 glyox_marine lactoyl 99.5 4.5E-13 9.7E-18 109.5 14.0 101 86-209 3-121 (162)
15 PLN02300 lactoylglutathione ly 99.5 6.5E-13 1.4E-17 117.7 15.2 107 81-212 18-124 (286)
16 cd07249 MMCE Methylmalonyl-CoA 99.5 8E-13 1.7E-17 100.7 11.4 101 88-211 1-102 (128)
17 cd08352 Glo_EDI_BRP_like_1 Thi 99.5 3.2E-12 7E-17 96.5 13.9 101 86-212 2-103 (125)
18 cd07250 HPPD_C_like C-terminal 99.4 1.1E-12 2.4E-17 110.4 10.4 106 86-212 2-114 (191)
19 cd07257 THT_oxygenase_C The C- 99.4 1.4E-12 3.1E-17 105.3 10.2 96 87-211 1-100 (153)
20 cd07243 2_3_CTD_C C-terminal d 99.4 1.2E-11 2.6E-16 99.0 14.6 102 85-220 4-112 (143)
21 PF00903 Glyoxalase: Glyoxalas 99.4 8.7E-13 1.9E-17 99.6 7.1 111 87-219 1-114 (128)
22 PLN02300 lactoylglutathione ly 99.4 1E-11 2.2E-16 110.0 14.7 103 85-212 152-254 (286)
23 cd07263 Glo_EDI_BRP_like_16 Th 99.4 1.8E-11 3.9E-16 91.4 13.4 98 90-212 1-98 (119)
24 cd08347 PcpA_C_like C-terminal 99.4 9.1E-12 2E-16 101.6 12.5 104 87-220 1-107 (157)
25 cd07237 BphC1-RGP6_C_like C-te 99.4 1.3E-11 2.8E-16 99.9 13.3 97 82-211 4-106 (154)
26 KOG2943 Predicted glyoxalase [ 99.4 2E-12 4.3E-17 112.1 8.0 107 85-216 15-139 (299)
27 cd07255 Glo_EDI_BRP_like_12 Th 99.4 3.3E-11 7.2E-16 92.0 13.8 103 86-220 1-106 (125)
28 cd08346 PcpA_N_like N-terminal 99.3 2.3E-11 4.9E-16 92.2 12.5 110 87-219 1-114 (126)
29 cd07245 Glo_EDI_BRP_like_9 Thi 99.3 1.3E-11 2.8E-16 91.0 10.7 95 88-212 1-95 (114)
30 cd07256 HPCD_C_class_II C-term 99.3 6.1E-11 1.3E-15 96.6 13.6 87 86-206 2-91 (161)
31 cd08355 Glo_EDI_BRP_like_14 Th 99.3 1.3E-10 2.8E-15 88.8 14.6 99 91-214 3-101 (122)
32 cd09014 BphC-JF8_C_like C-term 99.3 7.1E-11 1.5E-15 96.9 13.6 97 85-212 4-103 (166)
33 cd08360 MhqB_like_C C-terminal 99.3 7.4E-11 1.6E-15 92.6 13.2 92 86-212 2-96 (134)
34 cd08348 BphC2-C3-RGP6_C_like T 99.3 9.7E-11 2.1E-15 90.9 13.5 104 87-220 1-107 (134)
35 cd08364 FosX FosX, a fosfomyci 99.3 9.2E-11 2E-15 92.0 13.1 101 86-220 3-109 (131)
36 cd07247 SgaA_N_like N-terminal 99.3 1.2E-10 2.6E-15 87.6 13.2 94 88-214 1-94 (114)
37 PRK04101 fosfomycin resistance 99.3 1.1E-10 2.5E-15 92.2 13.1 92 85-211 2-95 (139)
38 cd07265 2_3_CTD_N N-terminal d 99.3 1.5E-10 3.2E-15 88.7 13.1 90 85-211 2-94 (122)
39 cd08343 ED_TypeI_classII_C C-t 99.3 1.6E-10 3.5E-15 90.1 13.3 90 89-212 1-93 (131)
40 cd07253 Glo_EDI_BRP_like_2 Thi 99.3 1.8E-10 3.9E-15 86.9 12.7 97 86-212 2-99 (125)
41 cd07240 ED_TypeI_classII_N N-t 99.2 2.2E-10 4.9E-15 86.1 12.4 87 86-211 1-90 (117)
42 cd08351 ChaP_like ChaP, an enz 99.2 2.1E-10 4.5E-15 88.4 12.4 89 84-212 1-91 (123)
43 cd09011 Glo_EDI_BRP_like_23 Th 99.2 2.3E-10 5E-15 87.5 12.1 96 86-214 1-98 (120)
44 cd07242 Glo_EDI_BRP_like_6 Thi 99.2 4.3E-10 9.2E-15 86.3 13.2 96 87-212 1-102 (128)
45 cd06587 Glo_EDI_BRP_like This 99.2 5.3E-10 1.2E-14 81.0 12.9 91 90-211 1-91 (112)
46 TIGR03211 catechol_2_3 catecho 99.2 4.9E-10 1.1E-14 99.3 14.7 95 84-211 142-240 (303)
47 cd07246 Glo_EDI_BRP_like_8 Thi 99.2 1E-09 2.3E-14 82.8 14.4 96 91-213 5-100 (122)
48 cd08363 FosB FosB, a fosfomyci 99.2 2.2E-10 4.8E-15 89.9 10.7 98 88-220 1-102 (131)
49 cd09013 BphC-JF8_N_like N-term 99.2 6.3E-10 1.4E-14 85.2 12.5 85 85-207 4-91 (121)
50 cd07264 Glo_EDI_BRP_like_15 Th 99.2 7.9E-10 1.7E-14 84.2 12.8 101 88-213 1-103 (125)
51 cd07239 BphC5-RK37_C_like C-te 99.2 9.1E-10 2E-14 88.3 13.7 87 86-211 3-92 (144)
52 TIGR01263 4HPPD 4-hydroxypheny 99.2 1.8E-10 3.9E-15 105.3 10.8 107 84-211 155-268 (353)
53 cd08354 Glo_EDI_BRP_like_13 Th 99.2 9.4E-10 2E-14 83.2 12.8 106 88-220 1-109 (122)
54 cd07252 BphC1-RGP6_N_like N-te 99.2 7.7E-10 1.7E-14 85.0 12.3 85 87-210 2-89 (120)
55 PRK06724 hypothetical protein; 99.2 5.6E-10 1.2E-14 88.2 11.5 88 84-212 4-97 (128)
56 cd08359 Glo_EDI_BRP_like_22 Th 99.1 1.2E-09 2.5E-14 82.8 12.7 96 90-214 4-99 (119)
57 cd07244 FosA FosA, a Fosfomyci 99.1 5.9E-10 1.3E-14 85.6 11.1 95 87-220 1-97 (121)
58 TIGR02295 HpaD 3,4-dihydroxyph 99.1 9.1E-10 2E-14 96.9 13.2 93 84-210 133-230 (294)
59 cd09012 Glo_EDI_BRP_like_24 Th 99.1 6.6E-10 1.4E-14 85.4 10.7 101 88-214 1-104 (124)
60 cd08361 PpCmtC_N N-terminal do 99.1 1.3E-09 2.8E-14 84.5 12.2 86 85-211 4-92 (124)
61 cd07258 PpCmtC_C C-terminal do 99.1 1.1E-09 2.3E-14 87.8 11.9 87 89-212 1-90 (141)
62 cd08357 Glo_EDI_BRP_like_18 Th 99.1 1.1E-09 2.4E-14 83.2 11.0 94 90-211 2-97 (125)
63 TIGR03213 23dbph12diox 2,3-dih 99.1 1.7E-09 3.6E-14 95.4 13.2 93 84-210 139-237 (286)
64 cd07238 Glo_EDI_BRP_like_5 Thi 99.1 2.4E-09 5.1E-14 80.6 12.0 87 91-214 4-90 (112)
65 cd07266 HPCD_N_class_II N-term 99.1 1.9E-09 4.1E-14 82.1 11.5 88 85-210 2-92 (121)
66 cd07262 Glo_EDI_BRP_like_19 Th 99.1 2E-09 4.4E-14 82.1 11.7 92 88-212 1-98 (123)
67 cd08362 BphC5-RrK37_N_like N-t 99.1 2.3E-09 5.1E-14 81.1 11.9 86 86-210 2-90 (120)
68 cd08344 MhqB_like_N N-terminal 99.1 2.7E-09 5.9E-14 80.8 12.0 95 87-220 2-96 (112)
69 cd08345 Fosfomycin_RP Fosfomyc 99.0 2.3E-09 5E-14 80.3 10.1 83 90-209 1-85 (113)
70 cd07261 Glo_EDI_BRP_like_11 Th 99.0 4.6E-09 9.9E-14 79.1 11.6 89 91-212 2-93 (114)
71 cd07235 MRD Mitomycin C resist 99.0 2.7E-09 5.9E-14 81.3 10.2 99 88-215 1-103 (122)
72 TIGR02295 HpaD 3,4-dihydroxyph 99.0 5.2E-09 1.1E-13 92.1 13.1 98 85-220 2-102 (294)
73 cd08349 BLMA_like Bleomycin bi 99.0 9.2E-09 2E-13 76.5 12.6 87 92-212 3-90 (112)
74 cd07267 THT_Oxygenase_N N-term 99.0 9.6E-09 2.1E-13 78.0 12.9 85 86-210 2-86 (113)
75 PF12681 Glyoxalase_2: Glyoxal 99.0 2.5E-09 5.5E-14 79.3 8.4 87 93-212 1-87 (108)
76 cd07254 Glo_EDI_BRP_like_20 Th 99.0 1.4E-08 3.1E-13 77.2 12.6 87 89-212 3-92 (120)
77 TIGR03211 catechol_2_3 catecho 99.0 9.1E-09 2E-13 91.2 12.8 89 85-211 2-93 (303)
78 PLN02875 4-hydroxyphenylpyruva 98.9 2.5E-09 5.4E-14 99.7 8.7 105 85-210 178-295 (398)
79 cd08350 BLMT_like BLMT, a bleo 98.9 1.7E-08 3.8E-13 77.1 11.3 78 91-206 6-83 (120)
80 TIGR01263 4HPPD 4-hydroxypheny 98.9 1.7E-08 3.7E-13 92.3 11.5 103 86-212 1-103 (353)
81 TIGR03213 23dbph12diox 2,3-dih 98.9 2.9E-08 6.3E-13 87.5 11.8 86 86-210 2-90 (286)
82 COG3324 Predicted enzyme relat 98.8 1.2E-07 2.5E-12 75.6 12.0 106 82-219 4-110 (127)
83 cd07251 Glo_EDI_BRP_like_10 Th 98.8 1.3E-07 2.7E-12 71.2 10.8 94 91-212 2-98 (121)
84 cd08356 Glo_EDI_BRP_like_17 Th 98.7 1.2E-07 2.5E-12 72.5 10.3 77 91-207 5-81 (113)
85 COG2764 PhnB Uncharacterized p 98.4 1E-05 2.3E-10 65.2 12.6 94 92-213 5-109 (136)
86 PF13468 Glyoxalase_3: Glyoxal 98.4 2E-06 4.4E-11 70.8 8.4 98 88-205 1-101 (175)
87 KOG2943 Predicted glyoxalase [ 98.3 6.3E-07 1.4E-11 78.2 5.2 89 88-209 150-240 (299)
88 COG2514 Predicted ring-cleavag 98.3 1.1E-05 2.3E-10 71.4 12.6 95 81-208 4-101 (265)
89 COG3565 Predicted dioxygenase 98.2 6.3E-06 1.4E-10 64.7 7.5 97 86-211 3-101 (138)
90 cd06588 PhnB_like Escherichia 98.2 7.1E-05 1.5E-09 58.3 12.7 91 92-213 4-108 (128)
91 COG3185 4-hydroxyphenylpyruvat 98.0 9E-06 2E-10 74.3 4.9 106 85-212 165-276 (363)
92 COG0346 GloA Lactoylglutathion 97.8 2.7E-05 5.8E-10 57.4 4.5 34 86-119 1-34 (138)
93 COG3607 Predicted lactoylgluta 97.5 0.00066 1.4E-08 54.0 8.5 105 87-220 3-114 (133)
94 KOG0638 4-hydroxyphenylpyruvat 97.3 0.00048 1E-08 62.5 6.1 104 83-211 13-121 (381)
95 KOG0638 4-hydroxyphenylpyruvat 97.2 0.00019 4.2E-09 65.1 2.6 114 80-211 171-292 (381)
96 PLN02875 4-hydroxyphenylpyruva 97.0 0.005 1.1E-07 57.8 10.1 105 88-211 1-122 (398)
97 COG2514 Predicted ring-cleavag 97.0 0.0052 1.1E-07 54.6 9.4 88 82-199 163-253 (265)
98 PRK10148 hypothetical protein; 96.7 0.074 1.6E-06 43.0 12.9 28 91-118 5-33 (147)
99 PRK01037 trmD tRNA (guanine-N( 96.2 0.026 5.7E-07 52.1 8.7 90 82-212 242-334 (357)
100 PF14506 CppA_N: CppA N-termin 96.2 0.091 2E-06 41.7 10.5 38 88-131 1-38 (125)
101 PF14696 Glyoxalase_5: Hydroxy 94.5 0.38 8.1E-06 39.0 9.0 95 85-210 7-102 (139)
102 cd08353 Glo_EDI_BRP_like_7 Thi 92.6 0.59 1.3E-05 36.0 7.1 47 84-131 84-130 (142)
103 PF06983 3-dmu-9_3-mt: 3-demet 89.9 4.9 0.00011 31.1 9.7 17 96-112 11-27 (116)
104 KOG2944 Glyoxalase [Carbohydra 88.9 1.7 3.7E-05 36.2 6.7 47 83-132 111-158 (170)
105 cd08342 HPPD_N_like N-terminal 87.5 3.4 7.5E-05 31.9 7.5 57 86-161 68-124 (136)
106 PF13669 Glyoxalase_4: Glyoxal 86.9 0.89 1.9E-05 33.9 3.7 26 183-208 1-27 (109)
107 cd07249 MMCE Methylmalonyl-CoA 86.2 3.8 8.2E-05 30.2 6.8 47 84-131 69-116 (128)
108 PLN02367 lactoylglutathione ly 86.0 3.7 8E-05 36.0 7.5 55 86-160 168-222 (233)
109 cd08352 Glo_EDI_BRP_like_1 Thi 85.6 2.1 4.5E-05 31.4 5.1 29 181-209 3-32 (125)
110 PRK11478 putative lyase; Provi 85.1 6.1 0.00013 29.5 7.6 29 86-115 74-102 (129)
111 cd08344 MhqB_like_N N-terminal 83.0 2.1 4.5E-05 31.7 4.1 30 181-210 2-31 (112)
112 COG3185 4-hydroxyphenylpyruvat 82.3 12 0.00026 34.8 9.4 96 85-210 20-116 (363)
113 PRK10291 glyoxalase I; Provisi 81.0 8 0.00017 29.2 6.9 55 86-159 64-119 (129)
114 cd07253 Glo_EDI_BRP_like_2 Thi 80.4 4.8 0.0001 29.4 5.3 31 181-211 3-34 (125)
115 PLN03042 Lactoylglutathione ly 80.2 9.5 0.00021 32.0 7.6 55 86-160 120-174 (185)
116 PF14507 CppA_C: CppA C-termin 79.5 1 2.3E-05 34.6 1.4 25 85-110 3-27 (101)
117 cd07265 2_3_CTD_N N-terminal d 77.4 5.3 0.00012 29.7 4.8 31 180-210 3-34 (122)
118 cd07241 Glo_EDI_BRP_like_3 Thi 77.2 17 0.00038 26.4 7.5 29 86-115 69-100 (125)
119 cd07233 Glyoxalase_I Glyoxalas 77.0 19 0.00041 26.2 7.7 31 87-118 70-100 (121)
120 cd07267 THT_Oxygenase_N N-term 76.9 4.8 0.0001 29.8 4.4 29 181-209 3-31 (113)
121 TIGR03081 metmalonyl_epim meth 76.8 8.2 0.00018 28.5 5.7 29 86-115 71-99 (128)
122 cd08346 PcpA_N_like N-terminal 75.8 3.8 8.2E-05 30.1 3.5 29 181-209 1-30 (126)
123 cd08360 MhqB_like_C C-terminal 75.0 12 0.00026 28.6 6.3 30 86-115 61-92 (134)
124 PF12681 Glyoxalase_2: Glyoxal 74.7 24 0.00052 25.1 7.6 33 85-118 54-86 (108)
125 TIGR00068 glyox_I lactoylgluta 74.3 11 0.00024 29.5 6.1 30 180-209 16-46 (150)
126 PF06185 YecM: YecM protein; 72.7 58 0.0013 27.7 10.2 31 84-114 31-61 (185)
127 cd07266 HPCD_N_class_II N-term 72.7 7.7 0.00017 28.6 4.6 30 181-210 4-34 (121)
128 cd07244 FosA FosA, a Fosfomyci 72.3 8.2 0.00018 28.8 4.7 30 181-210 1-31 (121)
129 cd07252 BphC1-RGP6_N_like N-te 72.1 7.1 0.00015 29.2 4.3 30 181-210 2-32 (120)
130 cd08364 FosX FosX, a fosfomyci 70.8 8.9 0.00019 29.4 4.6 29 181-209 4-33 (131)
131 PRK11700 hypothetical protein; 70.8 31 0.00067 29.4 8.1 29 85-113 37-65 (187)
132 cd07240 ED_TypeI_classII_N N-t 70.3 9.6 0.00021 27.6 4.6 30 181-210 2-32 (117)
133 cd07235 MRD Mitomycin C resist 69.6 11 0.00024 27.8 4.9 25 183-207 2-26 (122)
134 cd07245 Glo_EDI_BRP_like_9 Thi 69.1 8.3 0.00018 27.2 3.9 30 182-211 1-31 (114)
135 cd08362 BphC5-RrK37_N_like N-t 68.1 11 0.00025 27.5 4.6 30 181-210 3-33 (120)
136 cd08359 Glo_EDI_BRP_like_22 Th 68.0 29 0.00062 25.3 6.8 26 90-116 69-94 (119)
137 cd04882 ACT_Bt0572_2 C-termina 67.3 11 0.00024 24.8 4.0 26 181-206 39-64 (65)
138 cd06587 Glo_EDI_BRP_like This 66.7 11 0.00024 26.0 4.1 28 184-211 1-29 (112)
139 cd09013 BphC-JF8_N_like N-term 66.5 13 0.00028 27.6 4.7 29 181-209 6-35 (121)
140 cd07263 Glo_EDI_BRP_like_16 Th 64.9 36 0.00078 24.2 6.7 32 85-117 65-96 (119)
141 cd07255 Glo_EDI_BRP_like_12 Th 64.8 16 0.00035 26.9 4.9 30 181-210 2-32 (125)
142 cd07257 THT_oxygenase_C The C- 63.2 38 0.00083 26.7 7.1 31 86-116 66-98 (153)
143 cd07238 Glo_EDI_BRP_like_5 Thi 63.1 52 0.0011 23.7 7.3 28 88-116 58-85 (112)
144 TIGR03645 glyox_marine lactoyl 61.2 39 0.00085 27.0 6.9 28 85-113 91-118 (162)
145 cd07237 BphC1-RGP6_C_like C-te 59.2 48 0.001 26.2 7.0 31 86-116 72-104 (154)
146 cd07262 Glo_EDI_BRP_like_19 Th 58.0 20 0.00043 26.5 4.3 29 182-210 1-33 (123)
147 cd07258 PpCmtC_C C-terminal do 57.7 54 0.0012 25.7 7.0 31 85-115 54-86 (141)
148 cd07246 Glo_EDI_BRP_like_8 Thi 57.6 69 0.0015 23.1 7.7 31 86-117 67-97 (122)
149 PF07063 DUF1338: Domain of un 57.2 16 0.00036 33.2 4.3 43 89-132 36-83 (302)
150 cd07264 Glo_EDI_BRP_like_15 Th 56.5 58 0.0012 23.7 6.7 27 89-116 73-99 (125)
151 cd07247 SgaA_N_like N-terminal 56.5 72 0.0016 22.9 7.6 30 87-117 61-90 (114)
152 cd07243 2_3_CTD_C C-terminal d 56.2 59 0.0013 25.3 7.0 30 86-115 66-97 (143)
153 PRK06724 hypothetical protein; 55.9 70 0.0015 24.6 7.2 29 87-115 63-93 (128)
154 cd08358 Glo_EDI_BRP_like_21 Th 55.0 26 0.00057 27.5 4.7 30 181-210 2-32 (127)
155 cd08349 BLMA_like Bleomycin bi 53.2 70 0.0015 22.6 6.5 24 88-112 59-82 (112)
156 cd09011 Glo_EDI_BRP_like_23 Th 52.0 92 0.002 22.8 7.2 28 88-115 65-92 (120)
157 cd08347 PcpA_C_like C-terminal 50.8 60 0.0013 25.9 6.3 30 85-114 63-94 (157)
158 cd08348 BphC2-C3-RGP6_C_like T 50.7 66 0.0014 24.0 6.3 31 86-116 64-96 (134)
159 cd08361 PpCmtC_N N-terminal do 50.0 26 0.00057 26.3 3.9 29 181-209 6-35 (124)
160 cd08351 ChaP_like ChaP, an enz 49.8 28 0.00061 25.9 4.0 28 181-208 4-32 (123)
161 cd04883 ACT_AcuB C-terminal AC 48.5 41 0.0009 22.6 4.4 28 181-208 41-70 (72)
162 cd08345 Fosfomycin_RP Fosfomyc 47.9 27 0.00059 25.1 3.6 27 184-210 1-28 (113)
163 cd07268 Glo_EDI_BRP_like_4 Thi 46.8 1.6E+02 0.0035 24.2 9.9 27 88-114 2-28 (149)
164 cd08343 ED_TypeI_classII_C C-t 45.0 1.3E+02 0.0028 22.5 8.0 32 85-116 57-90 (131)
165 cd09012 Glo_EDI_BRP_like_24 Th 44.8 84 0.0018 23.2 6.0 28 88-115 69-98 (124)
166 cd07242 Glo_EDI_BRP_like_6 Thi 44.6 1.2E+02 0.0027 22.1 7.7 32 85-117 66-100 (128)
167 cd07251 Glo_EDI_BRP_like_10 Th 42.6 96 0.0021 22.2 5.9 31 85-116 65-95 (121)
168 COG4747 ACT domain-containing 42.6 24 0.00051 28.3 2.6 25 184-208 111-135 (142)
169 PF13468 Glyoxalase_3: Glyoxal 42.2 39 0.00084 27.3 4.0 26 84-109 150-175 (175)
170 cd07254 Glo_EDI_BRP_like_20 Th 40.6 1.4E+02 0.003 21.6 6.9 30 86-115 57-88 (120)
171 cd09014 BphC-JF8_C_like C-term 40.1 96 0.0021 24.8 6.0 28 87-114 69-98 (166)
172 cd04906 ACT_ThrD-I_1 First of 37.4 58 0.0013 23.3 3.9 28 181-208 40-71 (85)
173 cd07250 HPPD_C_like C-terminal 36.7 48 0.001 27.5 3.8 31 85-116 81-111 (191)
174 cd07239 BphC5-RK37_C_like C-te 34.0 1.4E+02 0.003 23.2 5.9 30 86-115 58-89 (144)
175 PRK04101 fosfomycin resistance 33.5 1.8E+02 0.004 22.1 6.4 29 86-115 62-92 (139)
176 COG3603 Uncharacterized conser 29.8 52 0.0011 26.2 2.6 25 183-207 103-127 (128)
177 cd08354 Glo_EDI_BRP_like_13 Th 28.8 1.3E+02 0.0027 21.7 4.6 28 183-210 2-30 (122)
178 cd08355 Glo_EDI_BRP_like_14 Th 27.1 2.5E+02 0.0053 20.4 7.2 28 88-116 69-96 (122)
179 cd04908 ACT_Bt0572_1 N-termina 26.8 1.2E+02 0.0027 20.2 3.9 24 184-207 42-65 (66)
180 KOG4657 Uncharacterized conser 26.5 45 0.00098 29.3 1.9 20 97-116 146-165 (246)
181 PF13176 TPR_7: Tetratricopept 26.1 31 0.00067 20.5 0.6 17 95-111 12-28 (36)
182 cd04885 ACT_ThrD-I Tandem C-te 25.0 1.1E+02 0.0024 20.7 3.4 27 181-207 38-67 (68)
183 cd04880 ACT_AAAH-PDT-like ACT 24.6 2.1E+02 0.0046 19.4 4.9 31 185-215 2-39 (75)
184 PF15067 FAM124: FAM124 family 23.0 5.3E+02 0.012 22.8 9.3 30 87-116 128-159 (236)
185 cd04886 ACT_ThrD-II-like C-ter 22.8 1.7E+02 0.0038 18.8 4.0 25 183-207 45-72 (73)
186 cd04909 ACT_PDH-BS C-terminal 20.5 94 0.002 20.7 2.3 24 183-206 43-69 (69)
No 1
>PLN02367 lactoylglutathione lyase
Probab=100.00 E-value=3.4e-42 Score=297.87 Aligned_cols=209 Identities=73% Similarity=1.108 Sum_probs=183.3
Q ss_pred ceecccccccccceeecccCCCCCccCCCCccccccCcccchhcccchhhhhhcccCCCCCCCCCCCCCCCCCCccCCCc
Q 027489 6 SISCSTSLSRLSIFSRLTSSTRPLFLSPSSLPFFSSTKTTTSWFKASNRFRLLSMASSEPKESPANNPGLHTARDEATNG 85 (222)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 85 (222)
+|++++++||||+|++|+ +| +++.|+....+.+.+ +-.|+++|+|..+|++ .++++.++++|+|..||++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~ 73 (233)
T PLN02367 1 SYSIATAISRLSPLILIV-KP-YSSGSSFITCFCNST----RKPKRFDRLRVFSMAS-EPKESPANNPGLSTSPDEATKG 73 (233)
T ss_pred CchhhhhhhhccceEEec-CC-cccCCcceeeccccc----cccccccceeeecccc-CCccCcccCcccccCCCCCCCC
Confidence 578999999999999999 66 666666544444333 3458889999999994 6788999999999999999999
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
+.++|++|+|+|+++|++||+++|||++..+.++++++|+++|+++++..++|.|..+++.|.++++..|||+++++.+.
T Consensus 74 ~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n~g~e~ 153 (233)
T PLN02367 74 YIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHNWGTES 153 (233)
T ss_pred cEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999987665667777788999999889999999999776
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCCcceEEEe
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKAGSIHCS 221 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~m~~laFi 221 (222)
++.+..|++||..+.|++||||.|+|+++++++|+++|++++++|.+|.+.+++||
T Consensus 154 ~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFI 209 (233)
T PLN02367 154 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFI 209 (233)
T ss_pred cccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEE
Confidence 55555588888777899999999999999999999999999999999998889987
No 2
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-35 Score=239.47 Aligned_cols=154 Identities=53% Similarity=0.837 Sum_probs=145.1
Q ss_pred CCCCCCCCCCCCCccCCCceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccce
Q 027489 67 ESPANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTV 146 (222)
Q Consensus 67 ~~~~~~~~~~~~~~~~t~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~ 146 (222)
.+++++.++|..+++.+..+.++|++++|+|+.+|+.||++++||.+....++++++|+++|++++...++|.+...+..
T Consensus 2 ~s~~~~~~l~~~~~~~~~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v 81 (170)
T KOG2944|consen 2 ASDANALGLFSRADSSTPTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSV 81 (170)
T ss_pred CccccchhhhcccCCCCchhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCce
Confidence 46789999999999999999999999999999999999999999999999899999999999999877778888777779
Q ss_pred eecCCCcEEEEeecCCCCCCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCCcceEEEe
Q 027489 147 WTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKAGSIHCS 221 (222)
Q Consensus 147 w~~~~~~~IEL~~~~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~m~~laFi 221 (222)
|++++...+||++|||++++++.. |++||.+|+|++||||+|+||+++|++|+++||+|.++|.||+||++||+
T Consensus 82 ~~~~~~~~~ELthn~Gtes~~~~~-~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~ 155 (170)
T KOG2944|consen 82 FVFSRNAKLELTHNWGTESPPDQA-YLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFL 155 (170)
T ss_pred EEecccCceeeecCCCCCCCcchh-hcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEE
Confidence 999999999999999999877544 99999999999999999999999999999999999999999999999997
No 3
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.95 E-value=1.5e-26 Score=194.66 Aligned_cols=161 Identities=81% Similarity=1.331 Sum_probs=131.0
Q ss_pred ccCCCCCCCCCCCCCCCCCCccCCCceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCC
Q 027489 60 MASSEPKESPANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPA 139 (222)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~ 139 (222)
|+ ++.++|+.+.+|+|.++|-+|++++++|++|+|+|+++|++||+++|||++..+.++++.+++++|+++++....|.
T Consensus 1 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~ 79 (185)
T PLN03042 1 MA-SASKESAANNPGLCGNPDEATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPT 79 (185)
T ss_pred CC-CCCcCCcccCcccccCCCCCCCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCc
Confidence 45 36688999999999999999999999999999999999999999999999998888877789999998764332344
Q ss_pred CCcccceeecCCCcEEEEeecCCCCCCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCCcceEE
Q 027489 140 DPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKAGSIH 219 (222)
Q Consensus 140 d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~m~~la 219 (222)
+...+..|++.+...|||+++++.+..+....|..++..+.|++||||.|+||++++++|+++|+++...|..+....++
T Consensus 80 ~~~~~~~~l~~~~~~lEL~~~~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~ 159 (185)
T PLN03042 80 DPPERTVWTFGRKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLA 159 (185)
T ss_pred chhhcccccccCCCEEEEEEcCCCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEE
Confidence 44456788888999999998766443222222555543446999999999999999999999999999888877666777
Q ss_pred Ee
Q 027489 220 CS 221 (222)
Q Consensus 220 Fi 221 (222)
||
T Consensus 160 fi 161 (185)
T PLN03042 160 FI 161 (185)
T ss_pred EE
Confidence 75
No 4
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.71 E-value=2.6e-16 Score=125.18 Aligned_cols=103 Identities=26% Similarity=0.453 Sum_probs=77.0
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCC-----------CcEEEEEEecCCCCCCCCCCcccceeecCCCcE
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPAT 154 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~-----------~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~ 154 (222)
+++.|++|+|+|+++|++||+++|||++..+.++++ +++.++++++.++. ....
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~---------------~~~~ 65 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPED---------------DHFV 65 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCC---------------CccE
Confidence 478999999999999999999999999988887776 55666777753210 1568
Q ss_pred EEEeecCCCCCCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCCcceEEEe
Q 027489 155 IELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKAGSIHCS 221 (222)
Q Consensus 155 IEL~~~~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~m~~laFi 221 (222)
|||+++++... |+.|+ + |++|.|+++ ++.++|+++|+++...|. +++||
T Consensus 66 lEL~~n~~~~~------~~~g~----~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-----~~~fi 114 (127)
T cd08358 66 VELTYNYGIGD------YELGN----D--FLGITIHSK-QAVSNAKKHNWPVTEVED-----GVYEV 114 (127)
T ss_pred EEeEecCCCCC------CCCCC----C--EEEEEEECH-HHHHHHHHCCCceecCCC-----CEEEE
Confidence 99999876532 54442 4 566666666 455999999999987664 26776
No 5
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.67 E-value=2.7e-15 Score=120.26 Aligned_cols=107 Identities=59% Similarity=0.985 Sum_probs=82.6
Q ss_pred CccCCCceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEe
Q 027489 79 RDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELT 158 (222)
Q Consensus 79 ~~~~t~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~ 158 (222)
.||.|+.+++.|+.|.|.|++++++||+++|||++..+.+.+++.+.+++++.++.. ....+++.
T Consensus 9 ~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~ 73 (150)
T TIGR00068 9 ADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDET---------------SAAVIELT 73 (150)
T ss_pred cCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCC---------------CccEEEEe
Confidence 689999999999999999999999999999999998766555555556677654210 13456765
Q ss_pred ecCCCCCCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecC
Q 027489 159 HNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 210 (222)
Q Consensus 159 ~~~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P 210 (222)
.+++... +..+ .+..|++|.|+|++++.+++.++|++++.+|
T Consensus 74 ~~~~~~~------~~~~----~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~ 115 (150)
T TIGR00068 74 HNWGTEK------YDLG----NGFGHIAIGVDDVYKACERVRALGGNVVREP 115 (150)
T ss_pred ecCCCCc------ccCC----CceeEEEEecCCHHHHHHHHHHcCCccccCC
Confidence 4433211 2222 3788999999999999999999999998877
No 6
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.62 E-value=2.1e-14 Score=108.86 Aligned_cols=110 Identities=55% Similarity=0.965 Sum_probs=81.0
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCC
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~ 167 (222)
|+|++|.|+|++++++||+++|||++......+++++..+++..++.. ....+++....+...
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~l~~~~~~~~-- 63 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDED---------------SEGVLELTYNWGTEE-- 63 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCC---------------CccEEEEEecCCCCC--
Confidence 589999999999999999999999998766555445666777654310 135677765433211
Q ss_pred CCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCCcceEEEe
Q 027489 168 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKAGSIHCS 221 (222)
Q Consensus 168 ~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~m~~laFi 221 (222)
++..+ .+..|++|.|+|+++++++++++|+++..+|..+....++|+
T Consensus 64 ---~~~~~----~~~~~i~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~ 110 (121)
T cd07233 64 ---PYDNG----NGFGHLAFAVDDVYAACERLEEMGVEVTKPPGDGGMKGIAFI 110 (121)
T ss_pred ---CcCCC----CCeEEEEEEeCCHHHHHHHHHHCCCEEeeCCccCCCceEEEE
Confidence 12222 367899999999999999999999999999876655555554
No 7
>PRK10291 glyoxalase I; Provisional
Probab=99.61 E-value=1.7e-14 Score=112.16 Aligned_cols=105 Identities=40% Similarity=0.751 Sum_probs=76.5
Q ss_pred EEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCCcc
Q 027489 92 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 171 (222)
Q Consensus 92 ~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~~~ 171 (222)
+|.|+|++++++||+++|||++..+...++..+.++|++.++.. ....++++.+++...
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~------ 59 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPET---------------EEAVIELTYNWGVDK------ 59 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCC---------------CcceEEeeecCCCCC------
Confidence 58899999999999999999998776666666777888764311 135678876544211
Q ss_pred CCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCC--CCcceEEEe
Q 027489 172 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG--GKAGSIHCS 221 (222)
Q Consensus 172 y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~d--G~m~~laFi 221 (222)
+..| .+++|+||.|+|+++++++|+++|+++..+|.. +....++||
T Consensus 60 ~~~g----~~~~hlaf~V~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i 107 (129)
T PRK10291 60 YELG----TAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFV 107 (129)
T ss_pred CcCC----CCeeEEEEEeCCHHHHHHHHHHcCCccccCCcccCCCceEEEEE
Confidence 3333 378899999999999999999999999876533 222345664
No 8
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.60 E-value=3.8e-14 Score=111.43 Aligned_cols=115 Identities=16% Similarity=0.221 Sum_probs=76.1
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCC-----------CcEEEEEEecCCCCCCCCCCcccceeecCCCcE
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPAT 154 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~-----------~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~ 154 (222)
.+++|++|.|+|++++++||++ |||++..+..+++ .+..+.++... .+...
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----------------~g~~~ 63 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP-----------------DGHSR 63 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC-----------------CCCce
Confidence 5799999999999999999998 9999876544322 11223333321 12468
Q ss_pred EEEeecCCCCCCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCC-CcceEEEe
Q 027489 155 IELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-KAGSIHCS 221 (222)
Q Consensus 155 IEL~~~~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG-~m~~laFi 221 (222)
|||+.+..+...+.-. .... ...|+.||||.|+|+++++++|+++|+++..+|.+. .....+|+
T Consensus 64 iel~~~~~~~~~~~~~-~~~~--~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~ 128 (142)
T cd08353 64 LELSKFHHPAVIADHR-PAPV--NALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYI 128 (142)
T ss_pred EEEEEecCCCCcCcCC-CCCC--CCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEE
Confidence 9998753322111000 1011 124788999999999999999999999999876543 33455554
No 9
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.58 E-value=1.8e-14 Score=109.88 Aligned_cols=107 Identities=25% Similarity=0.334 Sum_probs=79.6
Q ss_pred EEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCC
Q 027489 89 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 168 (222)
Q Consensus 89 ~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~ 168 (222)
+|++|.|+|++++++||+++||++.......+..+....++..+++ ...|||+++.+...
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~iELi~p~~~~~--- 60 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG-----------------PVQIELIQPLDGDS--- 60 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE-----------------TEEEEEEEESSTTC---
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC-----------------cEEEEEEEeCCCCc---
Confidence 6999999999999999999999998877666555666666665431 26899997654321
Q ss_pred CccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecC-CCC-CcceEEE
Q 027489 169 FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP-DGG-KAGSIHC 220 (222)
Q Consensus 169 ~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P-~dG-~m~~laF 220 (222)
+. ...+ .|++||||.|+|+++++++|+++|++++.++ ..| .-..++|
T Consensus 61 ~~-~~~~----~gi~Hia~~v~D~d~~~~~l~~~G~~~~~~~~~~g~~g~r~~f 109 (109)
T PF13669_consen 61 PL-DRGG----GGIHHIAFEVDDLDAAIARLEAQGFRVLDEGPRPGRPGRRVAF 109 (109)
T ss_dssp HH-HHTS----SEEEEEEEEESHHHHHHHHHHHTTECEEECEEEETGTCSEEEE
T ss_pred cc-ccCC----CCEEEEEEEeCCHHHHHHHHHHCCCEEcccCcccCCCCcEEEC
Confidence 10 1122 5999999999999999999999999998764 344 3456655
No 10
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.57 E-value=5.4e-14 Score=106.72 Aligned_cols=101 Identities=24% Similarity=0.390 Sum_probs=71.9
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d 166 (222)
+++|++|.|+|++++++||+++|||+.......+..++..+|+..++ +..++|.........
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~ 62 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD------------------GARLELMTRPDIAPS 62 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC------------------CcEEEEEcCcccCCC
Confidence 57999999999999999999999999865543333344556666532 356888753221110
Q ss_pred CCCccCCCCCCCCCceeEEEEEeC---CHHHHHHHHHhCCCeEEecCCC
Q 027489 167 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 167 ~~~~~y~~gn~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v~~P~d 212 (222)
+ ... ...|+.|+||.|+ |+++++++|+++|+++..+|..
T Consensus 63 ~----~~~---~~~g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~ 104 (125)
T cd07241 63 P----NEG---ERTGWAHLAFSVGSKEAVDELTERLRADGYLIIGEPRT 104 (125)
T ss_pred c----ccC---CCCceEEEEEECCCHHHHHHHHHHHHHCCCEEEeCcee
Confidence 0 111 1247899999996 4899999999999999987743
No 11
>PRK11478 putative lyase; Provisional
Probab=99.52 E-value=3.8e-13 Score=103.52 Aligned_cols=100 Identities=22% Similarity=0.217 Sum_probs=67.2
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCC-CcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~-~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~ 163 (222)
..+++|++|.|+|++++++||+++|||++..+...++ ..+.. .+..+ +...|+|+.....
T Consensus 4 i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~-~~~~~------------------~~~~l~l~~~~~~ 64 (129)
T PRK11478 4 LKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKG-DLALN------------------GQYVIELFSFPFP 64 (129)
T ss_pred cceecEEEEEcCCHHHHHHHHHHHhCCEeccccccccccccee-eEecC------------------CCcEEEEEEecCC
Confidence 4578999999999999999999999999865321111 11211 11111 1457888753222
Q ss_pred CCCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecC
Q 027489 164 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 210 (222)
Q Consensus 164 e~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P 210 (222)
...+ .+....|+.|+||.|+|+++++++|+++|+++...+
T Consensus 65 ~~~~-------~~~~~~g~~hi~f~v~d~~~~~~~l~~~G~~~~~~~ 104 (129)
T PRK11478 65 PERP-------SRPEACGLRHLAFSVDDIDAAVAHLESHNVKCEAIR 104 (129)
T ss_pred CCCC-------CCCCCCceeEEEEEeCCHHHHHHHHHHcCCeeeccc
Confidence 1111 011124788999999999999999999999987543
No 12
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.52 E-value=2.2e-13 Score=107.43 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=73.3
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCC
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~ 167 (222)
++|++|.|+|++++++||+++|||++..+...++ ...+++..+ ...|+|..........
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~--~~~~~~~~g-------------------~~~l~l~~~~~~~~~~ 59 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSED--KASYLLRQG-------------------DINFVLNSPLNSFAPV 59 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCc--eEEEEEEcC-------------------CEEEEEecCCCCCCch
Confidence 5899999999999999999999999987643221 223444322 3456665321111100
Q ss_pred CCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCC-CcceEEEe
Q 027489 168 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-KAGSIHCS 221 (222)
Q Consensus 168 ~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG-~m~~laFi 221 (222)
..+... .+.+..|++|.|+|+++++++++++|++++.+|.+. ....++||
T Consensus 60 --~~~~~~--~~~g~~hia~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i 110 (136)
T cd08342 60 --ADFLEK--HGDGVCDVAFRVDDAAAAYERAVARGAKPVQEPVEEPGELKIAAI 110 (136)
T ss_pred --HHHHHh--cCCceEEEEEEeCCHHHHHHHHHHcCCeEccCceecCCeEEEEEE
Confidence 001000 124788999999999999999999999999999873 33345554
No 13
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.52 E-value=1.2e-13 Score=105.66 Aligned_cols=112 Identities=24% Similarity=0.401 Sum_probs=77.2
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d 166 (222)
+++|++|.|+|++++++||+++|||++.....+++..+..+++..+ ...|+|....+...
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-------------------~~~i~l~~~~~~~~- 60 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG-------------------NTKVELLEPLGEDS- 60 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC-------------------CEEEEEEecCCCCC-
Confidence 5789999999999999999999999987654444434455665543 35688875322211
Q ss_pred CCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEec-CCCCCc-ceEEEe
Q 027489 167 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKK-PDGGKA-GSIHCS 221 (222)
Q Consensus 167 ~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~-P~dG~m-~~laFi 221 (222)
+ ...+...+ ..|..|+||.|+|+++++++++++|++++.+ |..+.. +.++|+
T Consensus 61 ~-~~~~~~~~--~~g~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~ 114 (128)
T TIGR03081 61 P-IAKFLEKN--GGGIHHIAIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFL 114 (128)
T ss_pred h-HHHHHhcC--CCceEEEEEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEe
Confidence 0 00011111 2478899999999999999999999999864 666654 344553
No 14
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.51 E-value=4.5e-13 Score=109.52 Aligned_cols=101 Identities=22% Similarity=0.188 Sum_probs=68.5
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEec--CC----------------CCcEEEEEEecCCCCCCCCCCccccee
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLD--FP----------------EMKFSLYFLGYEDTASAPADPVDRTVW 147 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~--~p----------------~~~~~l~flg~~~~~~~p~d~~~~~~w 147 (222)
.+++|++|.|+|+++|++||+++|||++..+.. .+ ...+.++++..++
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-------------- 68 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD-------------- 68 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC--------------
Confidence 478999999999999999999999998864210 00 0113344444321
Q ss_pred ecCCCcEEEEeecCCCCCCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEec
Q 027489 148 TFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKK 209 (222)
Q Consensus 148 ~~~~~~~IEL~~~~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~ 209 (222)
+..|||+...+... + .........|+.|+||.|+|+++++++++++|+++...
T Consensus 69 ----~~~ieL~~~~~~~~-~----~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~ 121 (162)
T TIGR03645 69 ----RIGVELFEFKNQEN-P----EDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMP 121 (162)
T ss_pred ----CCcEEEEeccCCCC-C----CcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCC
Confidence 45699987543221 1 11000012488999999999999999999999886543
No 15
>PLN02300 lactoylglutathione lyase
Probab=99.50 E-value=6.5e-13 Score=117.67 Aligned_cols=107 Identities=36% Similarity=0.656 Sum_probs=81.1
Q ss_pred cCCCceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeec
Q 027489 81 EATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (222)
Q Consensus 81 ~~t~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~ 160 (222)
|.....++.|++|.|+|++++++||+++|||++..+.+.+++.+..+|++.++.. ....++|..+
T Consensus 18 ~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~---------------~~~~lel~~~ 82 (286)
T PLN02300 18 PKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED---------------SNFVVELTYN 82 (286)
T ss_pred CccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCC---------------CceEEEEecc
Confidence 4455789999999999999999999999999998766666666666777654210 1356788654
Q ss_pred CCCCCCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCC
Q 027489 161 WGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 161 ~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~d 212 (222)
.+... +..+ .|+.|++|.|+|+++++++++++|+++...|..
T Consensus 83 ~~~~~------~~~~----~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~ 124 (286)
T PLN02300 83 YGVDK------YDIG----TGFGHFGIAVEDVAKTVELVKAKGGKVTREPGP 124 (286)
T ss_pred CCCCc------cccC----CCccEEEEEeCCHHHHHHHHHHCCCeeecCCcc
Confidence 33221 2222 378999999999999999999999999887754
No 16
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.46 E-value=8e-13 Score=100.66 Aligned_cols=101 Identities=25% Similarity=0.423 Sum_probs=72.8
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCC-CCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCC
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p-~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d 166 (222)
++|+.|.|+|++++.+||+++|||+.......+ ++.+..+++..+ +..++|..+......
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~l~l~~~~~~~~~ 61 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG-------------------NVQIELIEPLDDDSP 61 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC-------------------CEEEEEEEECCCCCc
Confidence 579999999999999999999999997754432 223445566542 467888765432211
Q ss_pred CCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCC
Q 027489 167 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 167 ~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~ 211 (222)
. ..+.. ....|..|++|.|+|+++++++++++|+++..+|.
T Consensus 62 ~--~~~~~--~~~~g~~h~~f~v~d~~~~~~~l~~~G~~~~~~~~ 102 (128)
T cd07249 62 I--AKFLE--KRGEGLHHIAFEVDDIDAALARLKAQGVRLLQEGP 102 (128)
T ss_pred H--HHHHh--cCCCceEEEEEEeCCHHHHHHHHHHCCCeeeccCC
Confidence 0 00000 11247899999999999999999999999998886
No 17
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.45 E-value=3.2e-12 Score=96.49 Aligned_cols=101 Identities=22% Similarity=0.320 Sum_probs=69.0
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCC-CcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~-~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
.+++|++|.|.|++++++||+++|||++..+...++ ..+.+ .+...+ +..++|+......
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~~------------------~~~i~l~~~~~~~ 62 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLNG------------------GYQLELFSFPNPP 62 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecCC------------------CcEEEEEEcCCCC
Confidence 478999999999999999999999999876532222 12221 222211 3567776432211
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCC
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~d 212 (222)
..+ . +....|..|++|.|+|+++++++++++|+++...|..
T Consensus 63 ~~~----~---~~~~~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~~~~ 103 (125)
T cd08352 63 ERP----S---YPEACGLRHLAFSVEDIEAAVKHLKAKGVEVEPIRVD 103 (125)
T ss_pred CCC----C---CCcCCCceEEEEEeCCHHHHHHHHHHcCCcccccccc
Confidence 110 0 0112478899999999999999999999999876644
No 18
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.42 E-value=1.1e-12 Score=110.40 Aligned_cols=106 Identities=24% Similarity=0.407 Sum_probs=74.5
Q ss_pred eEEEEEEEEeC--CHHHHHHHHHhccCcEEEEEecCCC--CcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecC
Q 027489 86 YFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 161 (222)
Q Consensus 86 ~~l~Hv~L~V~--DlekSi~FY~~vLGf~l~~~~~~p~--~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~ 161 (222)
.+++|+++.|+ |++++++||+++|||+.....+.++ .......+..++ ....|+|....
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~-----------------g~i~l~L~~~~ 64 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD-----------------GKIRIPLNEPA 64 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC-----------------CcEEEEEecCC
Confidence 36899999999 9999999999999999887765433 223334444322 14567776433
Q ss_pred CCCCC---CCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCC
Q 027489 162 GTESD---PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 162 g~e~d---~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~d 212 (222)
..... ..+..++.| .|++||||.|+|+++++++|+++|++++..|..
T Consensus 65 ~~~~~s~~~~fl~~~~G----~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P~~ 114 (191)
T cd07250 65 SGKRKSQIQEFLEYYGG----AGVQHIALATDDIFATVAALRARGVEFLPIPDN 114 (191)
T ss_pred CCCCccHHHHHHHHhCC----CceeEEEEECCCHHHHHHHHHHcCCeeccCchh
Confidence 21010 001012223 489999999999999999999999999988853
No 19
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.41 E-value=1.4e-12 Score=105.34 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=65.6
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCC-CCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p-~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
+++|++|.|+|++++++||+++|||++......+ +.+...+|+..+++.. +. ....+.+..
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-----------~~~~~~l~~------ 62 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEE-YV-----------DHHTLALAQ------ 62 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCC-cc-----------cchHHHHhc------
Confidence 5789999999999999999999999987654443 2233456665532100 00 001111110
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeCCHHHHH---HHHHhCCCeEEecCC
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPD 211 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~---~rL~~~GV~~v~~P~ 211 (222)
+. ..|+.||||.|+|+++++ ++|+++|+++...|.
T Consensus 63 ---------~~--~~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g 100 (153)
T cd07257 63 ---------GP--ESGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVG 100 (153)
T ss_pred ---------CC--CCceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCC
Confidence 00 147899999999999986 999999999986664
No 20
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.40 E-value=1.2e-11 Score=99.01 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=68.2
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcE-EEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~-~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~ 163 (222)
..+++|++|+|+|++++++||+++|||++..+...+++.. ..+|+..++. ...+.+..
T Consensus 4 ~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-----------------~h~~~~~~---- 62 (143)
T cd07243 4 AHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-----------------PHDIAFVG---- 62 (143)
T ss_pred CceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-----------------cceEEEec----
Confidence 4579999999999999999999999999866543333222 2234433210 12233321
Q ss_pred CCCCCCccCCCCCCCCCceeEEEEEeCCHHH---HHHHHHhCCCeEEecCC-CC--CcceEEE
Q 027489 164 ESDPDFKGYHNGNSEPRGFGHIGITVDDVYK---ACERFERLGVEFAKKPD-GG--KAGSIHC 220 (222)
Q Consensus 164 e~d~~~~~y~~gn~~p~G~~HIaf~VdDVda---a~~rL~~~GV~~v~~P~-dG--~m~~laF 220 (222)
.. ..++.|+||.|+|+++ ++++|+++|+++...|. .| ....++|
T Consensus 63 --------~~-----~~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf 112 (143)
T cd07243 63 --------GP-----DGKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYF 112 (143)
T ss_pred --------CC-----CCCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEE
Confidence 00 1378999999999877 67899999999986663 23 2344554
No 21
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.39 E-value=8.7e-13 Score=99.61 Aligned_cols=111 Identities=28% Similarity=0.372 Sum_probs=69.7
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEecC--CCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDF--PEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~--p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
+|+|++|.|+|++++++||+++|||++...... .......+++..+ ...++|..+....
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~ 61 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG-------------------EGHIELFLNPSPP 61 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST-------------------SSCEEEEEEESSS
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc-------------------ccceeeeeecccc
Confidence 689999999999999999999999999987652 1222233444432 3456666554332
Q ss_pred CCCCCccCC-CCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCCcceEE
Q 027489 165 SDPDFKGYH-NGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKAGSIH 219 (222)
Q Consensus 165 ~d~~~~~y~-~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~m~~la 219 (222)
.... ... .++ ...++.|+++.++|+++++++|++.|+++...|..+......
T Consensus 62 ~~~~--~~~~~~~-~~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~ 114 (128)
T PF00903_consen 62 PRAS--GHSFPEH-GGHHIAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGY 114 (128)
T ss_dssp SSSE--EEHHHSH-TSEEEEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEE
T ss_pred cccc--ccccccc-cceeEEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEE
Confidence 2110 000 000 011334444445578889999999999999988654444433
No 22
>PLN02300 lactoylglutathione lyase
Probab=99.38 E-value=1e-11 Score=110.01 Aligned_cols=103 Identities=35% Similarity=0.663 Sum_probs=79.5
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
..++.|+.|.|+|++++.+||+++|||++....+.++.+|...++++++.. ....+++..+.+..
T Consensus 152 ~~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~lel~~~~~~~ 216 (286)
T PLN02300 152 PEPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPED---------------KTTVLELTYNYGVT 216 (286)
T ss_pred CCcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCC---------------CccEEEEeecCCCC
Confidence 447889999999999999999999999998665555556777777654310 13467887654432
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCC
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~d 212 (222)
. +..|+ +++|++|.|+|+++++++++++|++++.+|.+
T Consensus 217 ~------~~~g~----~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~ 254 (286)
T PLN02300 217 E------YTKGN----AYAQIAIGTDDVYKTAEAIKLVGGKITREPGP 254 (286)
T ss_pred c------cccCC----ceeEEEEecCCHHHHHHHHHHcCCeEecCCcc
Confidence 1 33343 78899999999999999999999999988754
No 23
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.38 E-value=1.8e-11 Score=91.43 Aligned_cols=98 Identities=18% Similarity=0.298 Sum_probs=67.5
Q ss_pred EEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCC
Q 027489 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (222)
Q Consensus 90 Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~ 169 (222)
|++|.|.|++++++||+++|||++....+.. .++.+++++.++. ....|++....+....
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~-~~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~~--- 60 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMG-GGFRWVTVAPPGS----------------PETSLVLAPPANPAAM--- 60 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccC-CCcEEEEEeCCCC----------------CeeEEEEeCCCCcccc---
Confidence 8999999999999999999999998765422 2233444443221 0245655533222110
Q ss_pred ccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCC
Q 027489 170 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 170 ~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~d 212 (222)
. .. .+.+..|++|.|+|+++++++++++|+++..+|.+
T Consensus 61 ~-~~----~~~~~~~~~~~v~di~~~~~~l~~~g~~~~~~~~~ 98 (119)
T cd07263 61 S-GL----QPGGTPGLVLATDDIDATYEELKARGVEFSEEPRE 98 (119)
T ss_pred c-cc----cCCCceEEEEEehHHHHHHHHHHhCCCEEeecccc
Confidence 0 11 12467899999999999999999999999988843
No 24
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.37 E-value=9.1e-12 Score=101.59 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=70.3
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d 166 (222)
.++|++|.|+|++++.+||+++|||++..+.. +.+ .|...++. .+..|+|........
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~~--~~~~~~~~----------------~~~~l~l~~~~~~~~- 58 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---DRV--RLEEGGGG----------------PGAVVDVLEEPDQPR- 58 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---CEE--EEEecCCC----------------CCCEEEEEeCCCCCC-
Confidence 36899999999999999999999999976543 222 23322210 146788865421110
Q ss_pred CCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecCCCCCcceEEE
Q 027489 167 PDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKAGSIHC 220 (222)
Q Consensus 167 ~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P~dG~m~~laF 220 (222)
...+ ..++.||||.|+| +++++++|+++|+++......+.++.++|
T Consensus 59 -----~~~~---~~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~~~~~~~~~s~yf 107 (157)
T cd08347 59 -----GRPG---AGTVHHVAFRVPDDEELEAWKERLEALGLPVSGIVDRFYFKSLYF 107 (157)
T ss_pred -----Cccc---CCceEEEEEECCCHHHHHHHHHHHHHCCCCcccccccccEEEEEE
Confidence 0111 1478899999998 99999999999998654433445555554
No 25
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.37 E-value=1.3e-11 Score=99.86 Aligned_cols=97 Identities=22% Similarity=0.377 Sum_probs=68.4
Q ss_pred CCCceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCC---CCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEe
Q 027489 82 ATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP---EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELT 158 (222)
Q Consensus 82 ~t~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p---~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~ 158 (222)
.|..++++|++|.|+|++++++||+++|||++......+ +......|+..++. ...+.+.
T Consensus 4 ~~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~i~~~ 66 (154)
T cd07237 4 VTGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR-----------------HHSLALA 66 (154)
T ss_pred ccCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC-----------------CCCEEEE
Confidence 466789999999999999999999999999986543321 11234455544221 2334443
Q ss_pred ecCCCCCCCCCccCCCCCCCCCceeEEEEEeCCHH---HHHHHHHhCCCeEEecCC
Q 027489 159 HNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPD 211 (222)
Q Consensus 159 ~~~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVd---aa~~rL~~~GV~~v~~P~ 211 (222)
.. .. +.++.||||.|+|++ +++++|+++|+++..+|.
T Consensus 67 ~~------------~~----~~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~ 106 (154)
T cd07237 67 EG------------PG----PKRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLG 106 (154)
T ss_pred cC------------CC----CceeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCC
Confidence 21 00 137899999998754 689999999999987764
No 26
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=2e-12 Score=112.09 Aligned_cols=107 Identities=38% Similarity=0.636 Sum_probs=89.6
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCC-----------CcEEEEEEecCCCCCCCCCCcccceeecCCCc
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPA 153 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~-----------~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~ 153 (222)
.-++-|+.+.|-|.+++++||+++|||+++...+|++ ++|+-.|+|++. +|. +.
T Consensus 15 ~~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGp-----Eds----------hF 79 (299)
T KOG2943|consen 15 TRRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGP-----EDS----------HF 79 (299)
T ss_pred chheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCC-----Ccc----------cE
Confidence 5578899999999999999999999999999989988 678889999974 443 68
Q ss_pred EEEEeecCCCCCCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCC-------CeEEecCCCCCcc
Q 027489 154 TIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLG-------VEFAKKPDGGKAG 216 (222)
Q Consensus 154 ~IEL~~~~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~G-------V~~v~~P~dG~m~ 216 (222)
.|||++|.|... |..|| +|+||.|.++|+-..++.++..| +-+++.|+..++.
T Consensus 80 ViELTYNYgV~~------YelGn----dfg~i~I~s~dv~~~ve~v~~p~~~~~g~~~~~v~dPdGykF~ 139 (299)
T KOG2943|consen 80 VIELTYNYGVSK------YELGN----DFGGITIASDDVFSKVEKVNAPGGKGSGCGIAFVKDPDGYKFY 139 (299)
T ss_pred EEEEEeccCccc------eeccC----CcccEEEeHHHHHHHHHHhcCcCCcccceEEEEEECCCCcEEE
Confidence 999999998754 88887 99999999999999988888743 5566777554443
No 27
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.35 E-value=3.3e-11 Score=91.99 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=69.9
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
++++|+.|.|+|++++++||+++|||++.... + . .++++.++. ...|.|....+...
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~l~~~~~-----------------~~~l~l~~~~~~~~ 57 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D-S--TAVLGTGGK-----------------RPLLVLEEDPDAPP 57 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C-C--EEEEecCCC-----------------eEEEEEEeCCCCCc
Confidence 47999999999999999999999999998652 1 1 244554320 24566654322110
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeC---CHHHHHHHHHhCCCeEEecCCCCCcceEEE
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKAGSIHC 220 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v~~P~dG~m~~laF 220 (222)
+ ... ..|..|++|.|+ |+++++++++++|+++......+..+.++|
T Consensus 58 -~----~~~----~~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 106 (125)
T cd07255 58 -A----PPG----ATGLYHFAILLPSRADLAAALRRLIELGIPLVGASDHLVSEALYL 106 (125)
T ss_pred -c----cCC----CCcEEEEEEECCCHHHHHHHHHHHHHcCCceeccccccceeEEEE
Confidence 0 111 137789999997 499999999999999865544444444444
No 28
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.35 E-value=2.3e-11 Score=92.15 Aligned_cols=110 Identities=21% Similarity=0.234 Sum_probs=70.9
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCC-cEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM-KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~-~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
.++|++|.|+|++++++||+++|||++..+...++. .....++..+.. ..+..|+|........
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~~ 65 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLG---------------SPGTLLTFFEWPDAGP 65 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCC---------------CCCCEEEEEecCCCCC
Confidence 368999999999999999999999998776543221 112233332210 0145688875422211
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeC---CHHHHHHHHHhCCCeEEecCCCCCcceEE
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKAGSIH 219 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v~~P~dG~m~~la 219 (222)
+ .+....+..|+||.|+ |+++++++++++|+++...+..+.++.++
T Consensus 66 -~-------~~~~~~~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 114 (126)
T cd08346 66 -K-------GRRGPGQIHHIAFSVPSEASLDAWRERLRAAGVPVSGVVDHFGERSIY 114 (126)
T ss_pred -C-------CCCCCCcEEEEEEEcCCHHHHHHHHHHHHHcCCcccceEeecceEEEE
Confidence 0 0011246789999998 57999999999999987655433334443
No 29
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.34 E-value=1.3e-11 Score=90.96 Aligned_cols=95 Identities=23% Similarity=0.270 Sum_probs=67.0
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCC
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~ 167 (222)
|+|++|.|+|++++++||+++|||++..+...+. ...++..++ ...++|....+....
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~------------------~~~i~l~~~~~~~~~- 58 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGD------------------GPQLHLIEEDPPDAL- 58 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCC------------------CcEEEEEecCCCccc-
Confidence 5799999999999999999999999875433221 123333322 236777654322110
Q ss_pred CCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCC
Q 027489 168 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 168 ~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~d 212 (222)
.+ ...+..|++|.|+|+++++++++++|++++..+..
T Consensus 59 ----~~----~~~~~~~~~~~v~d~~~~~~~l~~~g~~~~~~~~~ 95 (114)
T cd07245 59 ----PE----GPGRDDHIAFRVDDLDAFRARLKAAGVPYTESDVP 95 (114)
T ss_pred ----cC----CCcccceEEEEeCCHHHHHHHHHHcCCCcccccCC
Confidence 01 11366899999999999999999999999887754
No 30
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.30 E-value=6.1e-11 Score=96.58 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=59.9
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
++++|++|.|+|++++++||+++|||++......+++.....|+..++. ...+.+...
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~i~l~~~----- 59 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG-----------------VHDTALTGG----- 59 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC-----------------cceEEEecC-----
Confidence 5799999999999999999999999998654333222222334432210 123433210
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeE
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEF 206 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~ 206 (222)
.+ .++.|+||.|+| +++++++|+++|+.+
T Consensus 60 --------~~----~~~~Hiaf~v~~~~~v~~~~~~L~~~G~~~ 91 (161)
T cd07256 60 --------NG----PRLHHVAFWVPEPHNIIRTCDLLAAAGYSD 91 (161)
T ss_pred --------CC----CceeEEEEEcCCHHHHHHHHHHHHHcCCCc
Confidence 11 267899999986 888899999999863
No 31
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.30 E-value=1.3e-10 Score=88.84 Aligned_cols=99 Identities=15% Similarity=0.170 Sum_probs=66.4
Q ss_pred EEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCCc
Q 027489 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (222)
Q Consensus 91 v~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~~ 170 (222)
..|.|+|++++++||+++||+++......+++......+..+ +..+.|...+......
T Consensus 3 p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~l~~~~~~~~~~--- 60 (122)
T cd08355 3 PTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG-------------------DGGVMVGSVRDDYRAS--- 60 (122)
T ss_pred EEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC-------------------CEEEEEecCCCccccc---
Confidence 468999999999999999999998765333333333334432 2345555433221100
Q ss_pred cCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCC
Q 027489 171 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK 214 (222)
Q Consensus 171 ~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~ 214 (222)
. ... ...+..|++|.|+|+++++++++++|++++.+|.+..
T Consensus 61 -~-~~~-~~~~~~~~~~~v~d~d~~~~~l~~~G~~v~~~~~~~~ 101 (122)
T cd08355 61 -S-ARA-GGAGTQGVYVVVDDVDAHYERARAAGAEILREPTDTP 101 (122)
T ss_pred -c-ccc-CCCceEEEEEEECCHHHHHHHHHHCCCEEeeCccccC
Confidence 0 000 1125579999999999999999999999998886644
No 32
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.30 E-value=7.1e-11 Score=96.87 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=65.9
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
..+++|++|.|+|++++++||+++|||++......+++.....|+...+. ...+.+... .
T Consensus 4 i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~l~~~--~- 63 (166)
T cd09014 4 VRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK-----------------VHDVAYTRD--P- 63 (166)
T ss_pred cceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC-----------------ceeEEEecC--C-
Confidence 56799999999999999999999999998765443333222344443210 123333211 0
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecCCC
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P~d 212 (222)
. + .+.++.|+||.|+| +++++++|+++|++++..|.+
T Consensus 64 -------~--~--~~~~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~ 103 (166)
T cd09014 64 -------A--G--ARGRLHHLAYALDTREDVLRAADIFLENGIFIEAGPGK 103 (166)
T ss_pred -------C--C--CCCCceEEEEECCCHHHHHHHHHHHHHcCCccccCCcc
Confidence 0 0 11367899999986 557889999999999877754
No 33
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.30 E-value=7.4e-11 Score=92.59 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=64.7
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
.+++|++|.|+|++++++||+++|||++....+ . ...|+..++.. ....|.|.... .
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~---------------~~~~i~l~~~~--~- 58 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGG---------------DHHNLFLIKTP--A- 58 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCC---------------CCcEEEEecCC--C-
Confidence 368999999999999999999999999876532 1 12455443210 13456664221 0
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeCCHHHHH---HHHHhCCCeEEecCCC
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDG 212 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~---~rL~~~GV~~v~~P~d 212 (222)
. ..|+.|+||.|+|++++. ++|+++|+++...|..
T Consensus 59 --------~----~~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~ 96 (134)
T cd08360 59 --------P----MAGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGR 96 (134)
T ss_pred --------C----CCcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCC
Confidence 0 137899999999988766 6999999998766643
No 34
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.29 E-value=9.7e-11 Score=90.94 Aligned_cols=104 Identities=25% Similarity=0.369 Sum_probs=70.3
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d 166 (222)
+|+|+.|.|+|++++++||+++|||++....+. . ...|+..+.. ....+.+....+...
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~--~~~~~~~~~~----------------~~~~l~l~~~~~~~~- 59 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--G--GLVFLSRDPD----------------EHHQIALITGRPAAP- 59 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--C--cEEEEEecCC----------------CceEEEEEecCCCCC-
Confidence 589999999999999999999999998765321 1 2345543310 134566654322110
Q ss_pred CCCccCCCCCCCCCceeEEEEEeCCHH---HHHHHHHhCCCeEEecCCCCCcceEEE
Q 027489 167 PDFKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGGKAGSIHC 220 (222)
Q Consensus 167 ~~~~~y~~gn~~p~G~~HIaf~VdDVd---aa~~rL~~~GV~~v~~P~dG~m~~laF 220 (222)
.. ...+++|++|.|+|++ ++++++.++|+++...+..+..+.++|
T Consensus 60 ------~~---~~~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~ 107 (134)
T cd08348 60 ------PP---GPAGLNHIAFEVDSLDDLRDLYERLRAAGITPVWPVDHGNAWSIYF 107 (134)
T ss_pred ------CC---CCCCceEEEEEeCCHHHHHHHHHHHHHCCCCccccCCCCceeEEEE
Confidence 00 1247789999998755 588999999999987766554444443
No 35
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.28 E-value=9.2e-11 Score=91.99 Aligned_cols=101 Identities=20% Similarity=0.258 Sum_probs=65.9
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCC--cEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM--KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~--~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~ 163 (222)
.+++|+.|.|+|++++++||+++|||++..+...... .....+. . ++..|+|... +
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~-~-------------------~~~~i~l~~~-~- 60 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL-I-------------------GGLWIAIMEG-D- 60 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE-c-------------------CCeEEEEecC-C-
Confidence 4799999999999999999999999987654321100 0001111 1 1345666421 1
Q ss_pred CCCCCCccCCCCCCCCCceeEEEEEeC--CHHHHHHHHHhCCCeEEecC--CCCCcceEEE
Q 027489 164 ESDPDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKP--DGGKAGSIHC 220 (222)
Q Consensus 164 e~d~~~~~y~~gn~~p~G~~HIaf~Vd--DVdaa~~rL~~~GV~~v~~P--~dG~m~~laF 220 (222)
. .. ..+..|+||.|+ |+++++++|+++|+++.... ..|..+.++|
T Consensus 61 ~-------~~-----~~~~~Hiaf~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf 109 (131)
T cd08364 61 S-------LQ-----ERTYNHIAFKISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYF 109 (131)
T ss_pred C-------CC-----CCCceEEEEEcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEE
Confidence 0 10 126789999998 79999999999999986432 2233455655
No 36
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.28 E-value=1.2e-10 Score=87.64 Aligned_cols=94 Identities=19% Similarity=0.103 Sum_probs=64.8
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCC
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~ 167 (222)
+.|++|.|+|++++++||+++|||++..... +...+ .++..++ ...+.+.......
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~------------------~~~~~~~~~~~~~--- 56 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG------------------GAVGGLMKAPEPA--- 56 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC------------------ccEEEEecCCCCC---
Confidence 3799999999999999999999999875432 12223 3333321 1234444321110
Q ss_pred CCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCC
Q 027489 168 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK 214 (222)
Q Consensus 168 ~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~ 214 (222)
. ...+..|++|.|+|+++++++++++|++++.+|.+..
T Consensus 57 -----~----~~~~~~~~~f~v~di~~~~~~l~~~g~~~~~~~~~~~ 94 (114)
T cd07247 57 -----A----GSPPGWLVYFAVDDVDAAAARVEAAGGKVLVPPTDIP 94 (114)
T ss_pred -----C----CCCCeEEEEEEeCCHHHHHHHHHHCCCEEEeCCcccC
Confidence 0 1124569999999999999999999999998886543
No 37
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.27 E-value=1.1e-10 Score=92.23 Aligned_cols=92 Identities=18% Similarity=0.312 Sum_probs=64.8
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
..+++|+.|.|+|++++++||+++|||++..+.. ...++..+ +..+.|....+ .
T Consensus 2 i~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~-------------------g~~l~l~~~~~-~ 55 (139)
T PRK04101 2 LKGINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN-------------------GLWIALNEEKD-I 55 (139)
T ss_pred CCcEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC-------------------CeEEEeeccCC-C
Confidence 3468999999999999999999999999875421 12344432 23455532211 1
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEeC--CHHHHHHHHHhCCCeEEecCC
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~Vd--DVdaa~~rL~~~GV~~v~~P~ 211 (222)
+ .++ ...+++|++|.|+ |+++++++++++|+++...|.
T Consensus 56 --~------~~~-~~~~~~hiaf~v~~~dv~~~~~~l~~~G~~i~~~~~ 95 (139)
T PRK04101 56 --P------RNE-IHQSYTHIAFSIEEEDFDHWYQRLKENDVNILPGRE 95 (139)
T ss_pred --C------Ccc-CCCCeeEEEEEecHHHHHHHHHHHHHCCceEcCCcc
Confidence 0 010 1236789999998 999999999999999976653
No 38
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.27 E-value=1.5e-10 Score=88.67 Aligned_cols=90 Identities=23% Similarity=0.330 Sum_probs=63.0
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
.++++|+.|.|+|++++++||+++|||++..... ++ . .|+...+.. ....+.|.. +
T Consensus 2 ~~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~-~~~~~~~~~---------------~~~~~~l~~--~-- 57 (122)
T cd07265 2 VLRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--R-VYLKAWDEF---------------DHHSIVLRE--A-- 57 (122)
T ss_pred cceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--e-EEEEccCCC---------------cccEEEecc--C--
Confidence 4689999999999999999999999999875431 21 1 233321100 023344421 0
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEeC---CHHHHHHHHHhCCCeEEecCC
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v~~P~ 211 (222)
. ..++.|++|.|+ |+++++++++++|+++...|.
T Consensus 58 ---------~----~~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~~ 94 (122)
T cd07265 58 ---------D----TAGLDFMGFKVLDDADLEKLEARLQAYGVAVERIPA 94 (122)
T ss_pred ---------C----CCCeeEEEEEeCCHHHHHHHHHHHHHCCCcEEEccc
Confidence 0 126789999997 799999999999999987653
No 39
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.26 E-value=1.6e-10 Score=90.10 Aligned_cols=90 Identities=21% Similarity=0.385 Sum_probs=65.8
Q ss_pred EEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCC
Q 027489 89 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 168 (222)
Q Consensus 89 ~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~ 168 (222)
+|+.|.|+|++++++||+++|||++......+ +....+|+..++. ...|++... .
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~l~~~~~--~----- 55 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED-----------------HHDLALFPG--P----- 55 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC-----------------cceEEEEcC--C-----
Confidence 59999999999999999999999987765433 2234456654321 235555421 0
Q ss_pred CccCCCCCCCCCceeEEEEEeCCHH---HHHHHHHhCCCeEEecCCC
Q 027489 169 FKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDG 212 (222)
Q Consensus 169 ~~~y~~gn~~p~G~~HIaf~VdDVd---aa~~rL~~~GV~~v~~P~d 212 (222)
. ..++.|++|.|+|++ +++++++++|+++..+|.+
T Consensus 56 ---~------~~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i~~~~~~ 93 (131)
T cd08343 56 ---E------RPGLHHVAFEVESLDDILRAADRLAANGIQIEFGPGR 93 (131)
T ss_pred ---C------CCCeeEEEEEcCCHHHHHHHHHHHHHcCCeeEECCCc
Confidence 0 137789999999874 7899999999999987754
No 40
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.25 E-value=1.8e-10 Score=86.88 Aligned_cols=97 Identities=21% Similarity=0.305 Sum_probs=66.2
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
.+++|+.|.|+|++++++||+++|||++....+.+ .+ ..+..+ ...++|....+. .
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~--~~~~~~-------------------~~~~~l~~~~~~-~ 57 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GR--KALRFG-------------------SQKINLHPVGGE-F 57 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccC--Cc--eEEEeC-------------------CEEEEEecCCCc-c
Confidence 46899999999999999999999999987653321 12 222322 245666532211 1
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeCC-HHHHHHHHHhCCCeEEecCCC
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVDD-VYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~VdD-Vdaa~~rL~~~GV~~v~~P~d 212 (222)
.+. ... ...|..|++|.|++ +++++++++++|+++..+|.+
T Consensus 58 ~~~--~~~----~~~~~~hi~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 99 (125)
T cd07253 58 EPA--AGS----PGPGSDDLCLITEPPIDELVAHLEAHGVPIEEGPVP 99 (125)
T ss_pred CcC--ccC----CCCCCceEEEEecccHHHHHHHHHHCCceeecCccc
Confidence 010 011 12477899999975 999999999999999877643
No 41
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.23 E-value=2.2e-10 Score=86.07 Aligned_cols=87 Identities=23% Similarity=0.389 Sum_probs=63.7
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
++++|+.|.|+|++++++||+++|||++....+ . ..|+..++. ....+.+... .
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~----~--~~~~~~~~~----------------~~~~~~~~~~--~-- 54 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA----G--SVYLRCSED----------------DHHSLVLTEG--D-- 54 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC----C--eEEEecCCC----------------CcEEEEEEeC--C--
Confidence 479999999999999999999999999886532 1 234443210 0234444321 0
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeC---CHHHHHHHHHhCCCeEEecCC
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v~~P~ 211 (222)
..+..|++|.|+ |++++.++++++|+++...|.
T Consensus 55 -------------~~~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~~~~~ 90 (117)
T cd07240 55 -------------EPGVDALGFEVASEEDLEALAAHLEAAGVAPEEASD 90 (117)
T ss_pred -------------CCCceeEEEEcCCHHHHHHHHHHHHHcCCceEEcCc
Confidence 025689999997 689999999999999988874
No 42
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.23 E-value=2.1e-10 Score=88.39 Aligned_cols=89 Identities=16% Similarity=0.351 Sum_probs=63.6
Q ss_pred CceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCC
Q 027489 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (222)
Q Consensus 84 ~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~ 163 (222)
|.++++|+.|.|+|+++|++||+++|||++.... +.+. ++..++ +..|++...
T Consensus 1 ~~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~~--~~~~~~------------------~~~l~~~~~--- 53 (123)
T cd08351 1 MTVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPFA--VVKLDN------------------GVSLDFAQP--- 53 (123)
T ss_pred CcceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCEE--EEEcCC------------------CcEEEEecC---
Confidence 3578999999999999999999999999987632 2222 222221 234555421
Q ss_pred CCCCCCccCCCCCCCCCceeEEEEEeC--CHHHHHHHHHhCCCeEEecCCC
Q 027489 164 ESDPDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 164 e~d~~~~~y~~gn~~p~G~~HIaf~Vd--DVdaa~~rL~~~GV~~v~~P~d 212 (222)
. .. .+..|++|.|+ |+++++++++++|+++...|..
T Consensus 54 ~-------~~------~~~~h~a~~v~~~dl~~~~~~l~~~G~~~~~~~~~ 91 (123)
T cd08351 54 D-------GE------IPPQHYAFLVSEEEFDRIFARIRERGIDYWADPQR 91 (123)
T ss_pred C-------CC------CCcceEEEEeCHHHHHHHHHHHHHcCCceecCCcc
Confidence 0 00 13479999887 6999999999999999877654
No 43
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.22 E-value=2.3e-10 Score=87.46 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=61.8
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCC-C
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT-E 164 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~-e 164 (222)
+++.|+.|.|+|+++|++||+++|||++..+. +. + ..+ . + +..|.+...+.. .
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~--~~--~-~~~-~--~------------------~~~l~~~~~~~~~~ 54 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDF--GE--N-VTF-E--G------------------GFALQEGYSWLEGI 54 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeecc--Cc--e-EEE-e--c------------------cceeccchhhhccC
Confidence 47899999999999999999999999986532 21 1 122 1 1 111111111100 0
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCC-eEEecCCCCC
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGV-EFAKKPDGGK 214 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV-~~v~~P~dG~ 214 (222)
..+. ...+ .+..|++|.|+|+++++++++++|+ +++.+|.+.+
T Consensus 55 ~~~~---~~~~----~~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~~ 98 (120)
T cd09011 55 SKAD---IIEK----SNNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEHP 98 (120)
T ss_pred Cccc---cccc----CCceEEEEEehhhHHHHHHHHhcCCcEEecCcccCC
Confidence 0000 1111 2447999999999999999999985 7888887644
No 44
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.21 E-value=4.3e-10 Score=86.33 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=66.9
Q ss_pred EEEEEEEEeCCHHHHHHHHHhcc---CcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVL---GMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vL---Gf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~ 163 (222)
+++|+.|.|+|++++++||+++| ||++....+ + ... |....+ +..|+|......
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~~~--~~~~~~------------------~~~i~l~~~~~~ 57 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-GRS--WRAGDG------------------GTYLVLQQADGE 57 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-Cce--EEecCC------------------ceEEEEEecccC
Confidence 47899999999999999999999 999877542 1 111 222111 457777643221
Q ss_pred CCCCCCccCCCCCCCCCceeEEEEEeC---CHHHHHHHHHhCCCeEEecCCC
Q 027489 164 ESDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 164 e~d~~~~~y~~gn~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v~~P~d 212 (222)
.. +. ...+ ..|++|+||.|+ |+++++++++++|+++...|.+
T Consensus 58 ~~-~~---~~~~---~~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~~~~~ 102 (128)
T cd07242 58 SA-GR---HDRR---NPGLHHLAFRAPSREAVDELYARLAKRGAEILYAPRE 102 (128)
T ss_pred CC-cc---cccC---CcCeeEEEEEcCCHHHHHHHHHHHHHcCCeEecCCcc
Confidence 11 00 1111 247889999997 4899999999999999987764
No 45
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.21 E-value=5.3e-10 Score=80.96 Aligned_cols=91 Identities=27% Similarity=0.345 Sum_probs=67.1
Q ss_pred EEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCC
Q 027489 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (222)
Q Consensus 90 Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~ 169 (222)
|+.+.|+|++++++||+++|||++...... ......++..+ +..|+|....+...
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~--~~~~~~~~~~~-------------------~~~i~l~~~~~~~~---- 55 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN--GGAEFAVLGLG-------------------GTRLELFEGDEPAP---- 55 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc--CCEEEEEEecC-------------------CceEEEecCCCCCC----
Confidence 889999999999999999999998876542 11234455432 35677865432210
Q ss_pred ccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCC
Q 027489 170 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 170 ~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~ 211 (222)
.. .+.+..|++|.|+|++++.++++++|+.+...+.
T Consensus 56 --~~----~~~~~~~~~~~v~~~~~~~~~l~~~g~~~~~~~~ 91 (112)
T cd06587 56 --AP----SGGGGVHLAFEVDDVDAAYERLKAAGVEVLGEPR 91 (112)
T ss_pred --cc----cCCCeeEEEEECCCHHHHHHHHHHcCCcccCCCc
Confidence 10 1236789999999999999999999999988774
No 46
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.20 E-value=4.9e-10 Score=99.29 Aligned_cols=95 Identities=18% Similarity=0.303 Sum_probs=64.8
Q ss_pred CceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcE-EEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCC
Q 027489 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWG 162 (222)
Q Consensus 84 ~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~-~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g 162 (222)
...+++|++|.|+|++++++||+++|||++......+++.. ...|+..++. ...+.+...
T Consensus 142 ~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~-- 202 (303)
T TIGR03211 142 GARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK-----------------AHDIAFVGD-- 202 (303)
T ss_pred CceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC-----------------CcccceecC--
Confidence 35689999999999999999999999999876544333332 2334433210 111222110
Q ss_pred CCCCCCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecCC
Q 027489 163 TESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 163 ~e~d~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P~ 211 (222)
. + +.+++|+||.|+| +++++++|+++|+++..+|.
T Consensus 203 ----------~-~---~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~ 240 (303)
T TIGR03211 203 ----------P-E---PGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPT 240 (303)
T ss_pred ----------C-C---CCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCc
Confidence 0 0 1248899999986 66688999999999987774
No 47
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.20 E-value=1e-09 Score=82.83 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=65.6
Q ss_pred EEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCCc
Q 027489 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (222)
Q Consensus 91 v~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~~ 170 (222)
+.|.|+|++++++||+++||+++......+++.+....+..+ +..+++..... . .. ..
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~l~~~~~-~-~~-~~ 62 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG-------------------DSVLMLADEFP-E-HG-SP 62 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC-------------------CEEEEEecCCc-c-cC-CC
Confidence 458999999999999999999998776544444444444433 23556643211 1 00 00
Q ss_pred cCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCC
Q 027489 171 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG 213 (222)
Q Consensus 171 ~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG 213 (222)
.. .+.+..|++|.|+|++++++++.+.|++++.+|...
T Consensus 63 ~~-----~~~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~ 100 (122)
T cd07246 63 AS-----WGGTPVSLHLYVEDVDATFARAVAAGATSVMPPADQ 100 (122)
T ss_pred CC-----CCCceEEEEEEeCCHHHHHHHHHHCCCeEecCcccc
Confidence 01 113557999999999999999999999999888643
No 48
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.18 E-value=2.2e-10 Score=89.90 Aligned_cols=98 Identities=20% Similarity=0.275 Sum_probs=65.3
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCC
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~ 167 (222)
|+|+.|.|+|++++++||+++|||++.... + .. .++..+ +..+++..... . +
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~---~-~~--~~~~~~-------------------~~~l~l~~~~~-~--~ 52 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLG---E-KT--AYFTIG-------------------GTWLALNEEPD-I--P 52 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccC---C-cc--ceEeeC-------------------ceEEEEEccCC-C--C
Confidence 589999999999999999999999986531 1 11 233332 23455543221 1 0
Q ss_pred CCccCCCCCCCCCceeEEEEEeCC--HHHHHHHHHhCCCeEEecCCC--CCcceEEE
Q 027489 168 DFKGYHNGNSEPRGFGHIGITVDD--VYKACERFERLGVEFAKKPDG--GKAGSIHC 220 (222)
Q Consensus 168 ~~~~y~~gn~~p~G~~HIaf~VdD--Vdaa~~rL~~~GV~~v~~P~d--G~m~~laF 220 (222)
... ...+.+||+|.|++ +++++++++++|+++..+|.. +..+.++|
T Consensus 53 ----~~~---~~~~~~hiaf~v~~~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f 102 (131)
T cd08363 53 ----RNE---IRQSYTHIAFTIEDSEFDAFYTRLKEAGVNILPGRKRDVRDRKSIYF 102 (131)
T ss_pred ----cCC---cCccceEEEEEecHHHHHHHHHHHHHcCCcccCCCccccCcceEEEE
Confidence 011 12367899999984 999999999999998766532 23344544
No 49
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.17 E-value=6.3e-10 Score=85.15 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=61.1
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
..+++|+.|.|+|++++++||+++|||++..+.+ . ..|+...+.. ....+++....
T Consensus 4 i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~----~--~~~l~~~~~~---------------~~~~~~l~~~~--- 59 (121)
T cd09013 4 IAHLAHVELLTPKPEESLWFFTDVLGLEETGREG----Q--SVYLRAWGDY---------------EHHSLKLTESP--- 59 (121)
T ss_pred ccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC----C--eEEEEeccCC---------------CccEEEEeeCC---
Confidence 4589999999999999999999999999876532 1 2344432110 02345553210
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEeC---CHHHHHHHHHhCCCeEE
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFA 207 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v 207 (222)
..|..|+||.|+ |+++++++++++|+++.
T Consensus 60 --------------~~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~ 91 (121)
T cd09013 60 --------------EAGLGHIAWRASSPEALERRVAALEASGLGIG 91 (121)
T ss_pred --------------CCceEEEEEEcCCHHHHHHHHHHHHHcCCccc
Confidence 126789999997 58899999999999974
No 50
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.17 E-value=7.9e-10 Score=84.18 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=60.7
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC-C
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES-D 166 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~-d 166 (222)
+.|+.|.|+|++++.+||+++|||++....+ .+.|. -+..+ ...+.+........ .
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~--~~~~~-------------------~~~~~~~~~~~~~~~~ 57 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYG--ELETG-------------------ETTLAFASHDLAESNL 57 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEE--EecCC-------------------cEEEEEEccccccccc
Confidence 4799999999999999999999999865322 22221 11111 12222221100000 0
Q ss_pred C-CCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCC
Q 027489 167 P-DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG 213 (222)
Q Consensus 167 ~-~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG 213 (222)
+ ...+ ...... .+..|++|.|+|+++++++++++|+++..+|...
T Consensus 58 ~~~~~~-~~~~~~-~~~~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~ 103 (125)
T cd07264 58 KGGFVK-ADPAQP-PAGFEIAFVTDDVAAAFARAVEAGAVLVSEPKEK 103 (125)
T ss_pred ccCccC-CccccC-CCcEEEEEEcCCHHHHHHHHHHcCCEeccCCccC
Confidence 0 0000 000001 2335999999999999999999999998888553
No 51
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.17 E-value=9.1e-10 Score=88.30 Aligned_cols=87 Identities=16% Similarity=0.341 Sum_probs=62.8
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
.+++|+.|.|+|++++++||+++|||++..... + ...|+..++. ...+.+...
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~-----------------~~~~~l~~~----- 55 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSD-----------------HHSIAIARG----- 55 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCC-----------------cceEEEccC-----
Confidence 489999999999999999999999999864321 1 1245554321 234444311
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeCCHHHHH---HHHHhCCCeEEecCC
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPD 211 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~---~rL~~~GV~~v~~P~ 211 (222)
. . .++.|++|.|+|++++. ++|+++|+++...|.
T Consensus 56 -------~-~----~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~ 92 (144)
T cd07239 56 -------P-H----PSLNHVAFEMPSIDEVMRGIGRMIDKGIDILWGPG 92 (144)
T ss_pred -------C-C----CceEEEEEECCCHHHHHHHHHHHHHcCCceeeCCc
Confidence 0 0 26789999999987775 899999999987663
No 52
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.17 E-value=1.8e-10 Score=105.28 Aligned_cols=107 Identities=20% Similarity=0.385 Sum_probs=72.5
Q ss_pred CceEEEEEEEEeC--CHHHHHHHHHhccCcEEEEEecCCC--CcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEee
Q 027489 84 NGYFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 159 (222)
Q Consensus 84 ~~~~l~Hv~L~V~--DlekSi~FY~~vLGf~l~~~~~~p~--~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~ 159 (222)
...+++|+++.|+ |++++++||+++|||++....+.+. .......+...+ +...|+|..
T Consensus 155 ~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~-----------------g~~~i~L~e 217 (353)
T TIGR01263 155 GLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPD-----------------GKVKIPLNE 217 (353)
T ss_pred CeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCC-----------------CcEEEEEec
Confidence 3557999999999 9999999999999999987655322 111111122111 246678864
Q ss_pred cCCCCCC---CCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCC
Q 027489 160 NWGTESD---PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 160 ~~g~e~d---~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~ 211 (222)
+...... ..+...+.| .|++||||.|+|+++++++|+++|++++..|.
T Consensus 218 p~~~~~~s~i~~fl~~~~g----~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P~ 268 (353)
T TIGR01263 218 PASGKDKSQIEEFLEFYNG----AGVQHIALNTDDIVRTVRALRARGVEFLDTPD 268 (353)
T ss_pred cCCCCCCCHHHHHHHHcCC----CCccEEEEEcCCHHHHHHHHHHcCCccCcCCH
Confidence 3211110 001112334 48999999999999999999999999998874
No 53
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.16 E-value=9.4e-10 Score=83.25 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=66.6
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCC
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~ 167 (222)
+.|+.|.|.|++++++||+++|||++..+ +++.+ .++..++ ...+.+..........
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~---~~~~~--~~l~~~~------------------~~~~~l~~~~~~~~~~ 57 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLK---EDRRL--AFFWVGG------------------RGMLLLFDPGATSTPG 57 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeec---CCCce--EEEEcCC------------------CcEEEEEecCCccccc
Confidence 35899999999999999999999998764 22223 3444432 2334443321111000
Q ss_pred CCccCCCCCCCCCceeEEEEEe--CCHHHHHHHHHhCCCeEEecCC-CCCcceEEE
Q 027489 168 DFKGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKPD-GGKAGSIHC 220 (222)
Q Consensus 168 ~~~~y~~gn~~p~G~~HIaf~V--dDVdaa~~rL~~~GV~~v~~P~-dG~m~~laF 220 (222)
.. .. . ....+..|++|.| +|++++++++.++|+++...+. .+..+.++|
T Consensus 58 ~~--~~-~-~~~~~~~~~~~~v~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 109 (122)
T cd08354 58 GE--IP-P-HGGSGPGHFAFAIPAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYF 109 (122)
T ss_pred CC--CC-C-CCCCCccEEEEEcCHHHHHHHHHHHHhcCCceeccccCCCCeeEEEE
Confidence 00 00 0 0124778999999 5799999999999999877665 233444443
No 54
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.16 E-value=7.7e-10 Score=84.98 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=60.7
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d 166 (222)
++.|+.|.|+|+++|++||+++|||++..+.+ . . ..|+..++. +..+.|... .
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~-~--~~~~~~~~~-----------------~~~~~l~~~--~--- 54 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D-G--ALYLRMDDR-----------------AWRIAVHPG--E--- 54 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC--C-C--eEEEEccCC-----------------ceEEEEEeC--C---
Confidence 57899999999999999999999999865421 1 1 123333221 234444321 0
Q ss_pred CCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecC
Q 027489 167 PDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKP 210 (222)
Q Consensus 167 ~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P 210 (222)
. .++.|++|.|++ +++++++|+++|+++...|
T Consensus 55 --------~----~~~~~~~f~v~~~~dl~~~~~~l~~~Gv~~~~~~ 89 (120)
T cd07252 55 --------A----DDLAYAGWEVADEAALDALAARLRAAGVAVEEGS 89 (120)
T ss_pred --------C----CceeEEEEEECCHHHHHHHHHHHHHcCCeEEEcC
Confidence 0 266899999974 8999999999999998765
No 55
>PRK06724 hypothetical protein; Provisional
Probab=99.15 E-value=5.6e-10 Score=88.16 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=59.1
Q ss_pred CceEEEEEEEEeCCHHHHHHHHHhcc---CcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeec
Q 027489 84 NGYFMQQTMFRIKDPKVSLDFYSRVL---GMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (222)
Q Consensus 84 ~~~~l~Hv~L~V~DlekSi~FY~~vL---Gf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~ 160 (222)
+..+++|+.|.|+|+++|++||+++| ||+..... .| ..+ ...|-|. .
T Consensus 4 ~~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~---------~~-~~g-------------------~~~l~l~-~ 53 (128)
T PRK06724 4 LRAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEV---------AY-STG-------------------ESEIYFK-E 53 (128)
T ss_pred cCcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeE---------ee-eCC-------------------CeeEEEe-c
Confidence 56789999999999999999999977 55543211 11 111 1223232 1
Q ss_pred CCCCCCCCCccCCCCCCCCCceeEEEEEe---CCHHHHHHHHHhCCCeEEecCCC
Q 027489 161 WGTESDPDFKGYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 161 ~g~e~d~~~~~y~~gn~~p~G~~HIaf~V---dDVdaa~~rL~~~GV~~v~~P~d 212 (222)
+... ... ..|..|+||.| +|+|+++++++++|+++..+|.+
T Consensus 54 ~~~~-------~~~----~~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~ 97 (128)
T PRK06724 54 VDEE-------IVR----TLGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPME 97 (128)
T ss_pred CCcc-------ccC----CCCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcc
Confidence 1110 000 13678999998 78999999999999999877754
No 56
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.15 E-value=1.2e-09 Score=82.85 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=62.5
Q ss_pred EEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCC
Q 027489 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (222)
Q Consensus 90 Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~ 169 (222)
+..|.|+|+++|++||+++|||++.... ..+ .++..++. ...|.|... .....+.
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~~-----------------~~~l~l~~~-~~~~~~~- 58 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWY--VSLRSPDG-----------------GVELAFMLP-GHETVPA- 58 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcE--EEEecCCC-----------------ceEEEEccC-CCCCCcc-
Confidence 5789999999999999999999987642 122 23333221 245555421 1111010
Q ss_pred ccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCC
Q 027489 170 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK 214 (222)
Q Consensus 170 ~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~ 214 (222)
.. ......+ .|++|.|+|+++++++++++|+++..+|.+..
T Consensus 59 --~~-~~~~~~~-~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~ 99 (119)
T cd08359 59 --AQ-YQFQGQG-LILNFEVDDVDAEYERLKAEGLPIVLPLRDEP 99 (119)
T ss_pred --hh-cccCCce-EEEEEEECCHHHHHHHHHhcCCCeeeccccCC
Confidence 00 0011124 49999999999999999999999988887644
No 57
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.14 E-value=5.9e-10 Score=85.60 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=64.2
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d 166 (222)
+++|+.|.|+|++++++||+++|||++....+ +. .++..+ +..+.+.....
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~~----~~~~~~-------------------~~~~~l~~~~~---- 51 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--KG----AYLEAG-------------------DLWLCLSVDAN---- 51 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--Cc----eEEecC-------------------CEEEEEecCCC----
Confidence 47899999999999999999999999875432 21 233322 12333422111
Q ss_pred CCCccCCCCCCCCCceeEEEEEe--CCHHHHHHHHHhCCCeEEecCCCCCcceEEE
Q 027489 167 PDFKGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKPDGGKAGSIHC 220 (222)
Q Consensus 167 ~~~~~y~~gn~~p~G~~HIaf~V--dDVdaa~~rL~~~GV~~v~~P~dG~m~~laF 220 (222)
.... .+..|++|.| +|+++++++++++|+++..++.+. .+.++|
T Consensus 52 -----~~~~----~~~~hi~f~v~~~dl~~~~~~l~~~G~~~~~~~~~~-~~~~~f 97 (121)
T cd07244 52 -----VGPA----KDYTHYAFSVSEEDFASLKEKLRQAGVKEWKENTSE-GDSFYF 97 (121)
T ss_pred -----CCCC----CCeeeEEEEeCHHHHHHHHHHHHHcCCcccCCCCCC-ccEEEE
Confidence 1111 2568999998 579999999999999987766542 234444
No 58
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.13 E-value=9.1e-10 Score=96.93 Aligned_cols=93 Identities=24% Similarity=0.349 Sum_probs=64.6
Q ss_pred CceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCC
Q 027489 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 163 (222)
Q Consensus 84 ~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~ 163 (222)
...+++|+.|.|+|++++++||+++|||++......+.+.+...|+..++. ...+.+..
T Consensus 133 ~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~---- 191 (294)
T TIGR02295 133 SPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG-----------------VHDIALTN---- 191 (294)
T ss_pred cceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC-----------------cCceEeec----
Confidence 567999999999999999999999999998765443333333344432210 12233321
Q ss_pred CCCCCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCe--EEecC
Q 027489 164 ESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVE--FAKKP 210 (222)
Q Consensus 164 e~d~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~--~v~~P 210 (222)
. ++ .|++|+||.|+| +++++++|+++|++ +...|
T Consensus 192 --------~-~~----~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p 230 (294)
T TIGR02295 192 --------G-NG----PRLHHIAYWVHDPLNIIKACDILASAGLSDSIERGP 230 (294)
T ss_pred --------C-CC----CceeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCC
Confidence 0 11 378999999998 55679999999998 55555
No 59
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.13 E-value=6.6e-10 Score=85.39 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=62.5
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCC
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~ 167 (222)
++++.|.|+|+++|++||++ |||++......+ +.. .+ ..++ ...|.|........
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~--~~~-~~-~~~~------------------~~~l~l~~~~~~~~-- 55 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE--KAA-CM-VISD------------------NIFVMLLTEDFFQT-- 55 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCC--CeE-EE-EECC------------------ceEEEEEcHHHHhh--
Confidence 36789999999999999976 999987533322 221 12 1121 24566653211100
Q ss_pred CCccCCCCCCCCCceeEEEEEeC---CHHHHHHHHHhCCCeEEecCCCCC
Q 027489 168 DFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGK 214 (222)
Q Consensus 168 ~~~~y~~gn~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v~~P~dG~ 214 (222)
+.........+.+..|++|.|+ ||++++++++++|++++.+|.+..
T Consensus 56 -~~~~~~~~~~~~~~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~ 104 (124)
T cd09012 56 -FTPKPIADTKKSTEVLISLSADSREEVDELVEKALAAGGKEFREPQDHG 104 (124)
T ss_pred -ccCCCcccCCCCCeEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccCC
Confidence 0000000001234569999998 588999999999999998887654
No 60
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.12 E-value=1.3e-09 Score=84.53 Aligned_cols=86 Identities=16% Similarity=0.223 Sum_probs=62.4
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
..++.|+.|.|+|++++++||+++|||++..+. + . ..|+..++. +..+.+.. +.
T Consensus 4 ~~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~--~--~--~~~l~~~~~-----------------~~~i~l~~--~~- 57 (124)
T cd08361 4 LQDIAYVRLGTRDLAGATRFATDILGLQVAERT--A--K--ATYFRSDAR-----------------DHTLVYIE--GD- 57 (124)
T ss_pred EEEeeEEEEeeCCHHHHHHHHHhccCceeccCC--C--C--eEEEEcCCc-----------------cEEEEEEe--CC-
Confidence 468899999999999999999999999986542 1 1 234443321 23344431 10
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecCC
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P~ 211 (222)
.+..|++|.|+| +++++++++++|+++...+.
T Consensus 58 ---------------~~~~~iaf~v~~~~dv~~~~~~l~~~G~~~~~~~~ 92 (124)
T cd08361 58 ---------------PAEQASGFELRDDDALESAATELEQYGHEVRRGTA 92 (124)
T ss_pred ---------------CceEEEEEEECCHHHHHHHHHHHHHcCCceEEcCH
Confidence 145799999986 99999999999999876553
No 61
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.12 E-value=1.1e-09 Score=87.82 Aligned_cols=87 Identities=16% Similarity=0.195 Sum_probs=60.8
Q ss_pred EEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCC
Q 027489 89 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 168 (222)
Q Consensus 89 ~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~ 168 (222)
.|+.|+|+|++++++||+++|||++..+.+ . ...|+...+.. ....+.+..
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~---~--~~~~l~~~~~~---------------~~h~~~~~~--------- 51 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE---D--RIVFMRCHPNP---------------FHHTFAVGP--------- 51 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC---C--EEEEEEcCCCC---------------Ccceeeecc---------
Confidence 489999999999999999999999876542 1 23565532210 012222210
Q ss_pred CccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecCCC
Q 027489 169 FKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 169 ~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P~d 212 (222)
. ...+++||+|.|+| +++++++|+++|+++...|..
T Consensus 52 ---~-----~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~ 90 (141)
T cd07258 52 ---A-----SSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGR 90 (141)
T ss_pred ---C-----CCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCce
Confidence 0 01488999999986 457799999999999887754
No 62
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.11 E-value=1.1e-09 Score=83.17 Aligned_cols=94 Identities=20% Similarity=0.324 Sum_probs=56.7
Q ss_pred EEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCC
Q 027489 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (222)
Q Consensus 90 Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~ 169 (222)
|++|.|+|+++|++||+++|||++....+ .+ .++..+ +..+.|........+..
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~-------------------~~~~~l~~~~~~~~~~~- 55 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFF-------------------GHQLVAHLSPNFNADAS- 55 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--cccccc-------------------CcEEEEEeccCCCcccc-
Confidence 99999999999999999999999865321 11 222221 12233321111100000
Q ss_pred ccCCCCCCCCCceeEEE--EEeCCHHHHHHHHHhCCCeEEecCC
Q 027489 170 KGYHNGNSEPRGFGHIG--ITVDDVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 170 ~~y~~gn~~p~G~~HIa--f~VdDVdaa~~rL~~~GV~~v~~P~ 211 (222)
.....+ ...+..|++ |.++|+++++++|+++|+++..+|.
T Consensus 56 ~~~~~~--~~~~~~h~~~~~~~~dv~~~~~~l~~~g~~~~~~p~ 97 (125)
T cd08357 56 DNAVDG--HPVPVPHFGLILSEEEFDALAERLEAAGVEFLIEPY 97 (125)
T ss_pred cCCCCC--CccCCceEEEEEeHHHHHHHHHHHHHCCCcEecCcc
Confidence 000011 112456775 4668999999999999999987764
No 63
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.09 E-value=1.7e-09 Score=95.37 Aligned_cols=93 Identities=23% Similarity=0.430 Sum_probs=63.8
Q ss_pred CceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCC--C-cEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeec
Q 027489 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE--M-KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (222)
Q Consensus 84 ~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~--~-~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~ 160 (222)
...+|+|++|.|+|++++++||+++|||++......+. + .+..+|+..++. ...+.+...
T Consensus 139 ~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~-----------------~~~~~l~~~ 201 (286)
T TIGR03213 139 GDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER-----------------HHSLAFAAG 201 (286)
T ss_pred CCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC-----------------cceEEEecC
Confidence 35789999999999999999999999999876543321 1 123456554321 223444211
Q ss_pred CCCCCCCCCccCCCCCCCCCceeEEEEEeCCHHH---HHHHHHhCCCeEEecC
Q 027489 161 WGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYK---ACERFERLGVEFAKKP 210 (222)
Q Consensus 161 ~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVda---a~~rL~~~GV~~v~~P 210 (222)
.. ..+++|+||.|+|+++ ++++|+++|+ ....|
T Consensus 202 ------------~~----~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~ 237 (286)
T TIGR03213 202 ------------PS----EKRLNHLMLEVDTLDDVGLALDRVDADGI-VASTL 237 (286)
T ss_pred ------------CC----CCceEEEEEEcCCHHHHHHHHHHHHHCCC-EEecC
Confidence 00 1378999999998666 8999999999 44444
No 64
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.09 E-value=2.4e-09 Score=80.61 Aligned_cols=87 Identities=21% Similarity=0.326 Sum_probs=59.7
Q ss_pred EEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCCc
Q 027489 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (222)
Q Consensus 91 v~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~~ 170 (222)
..|.|+|++++++||+++|||++... .+ + ..++..++. ....+.+....+
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~----~~-~-~~~~~~~~~----------------~~~~~~~~~~~~-------- 53 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMD----HG-W-IATFASPQN----------------MTVQVSLATEGG-------- 53 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEc----CC-c-eEEEeecCC----------------CCcEEEEecCCC--------
Confidence 46899999999999999999998643 11 1 233332210 024455542110
Q ss_pred cCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCC
Q 027489 171 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK 214 (222)
Q Consensus 171 ~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~ 214 (222)
. + .+..|++|.|+|+++++++|+++|+++..+|.+..
T Consensus 54 -~--~----~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~ 90 (112)
T cd07238 54 -T--A----TVVPDLSIEVDDVDAALARAVAAGFAIVYGPTDEP 90 (112)
T ss_pred -C--C----CCCCEEEEEeCCHHHHHHHHHhcCCeEecCCccCC
Confidence 0 1 13469999999999999999999999998886543
No 65
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.09 E-value=1.9e-09 Score=82.08 Aligned_cols=88 Identities=26% Similarity=0.324 Sum_probs=61.3
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
..++.|+.|.|+|++++++||+++|||++....+ .+ .|+...+.. ....+.+... .
T Consensus 2 ~~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~--~~~~~~~~~---------------~~~~~~~~~~--~- 57 (121)
T cd07266 2 ILRLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DR--IYLRGLEEF---------------IHHSLVLTKA--P- 57 (121)
T ss_pred cceeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----Ce--EEEEecCCC---------------ceEEEEEeeC--C-
Confidence 4589999999999999999999999999865421 12 233321100 0223333211 0
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEe---CCHHHHHHHHHhCCCeEEecC
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKP 210 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~V---dDVdaa~~rL~~~GV~~v~~P 210 (222)
..++.|++|.| +|+++++++++++|+++...|
T Consensus 58 --------------~~~~~hi~~~v~~~~dv~~~~~~l~~~g~~~~~~~ 92 (121)
T cd07266 58 --------------VAGLGHIAFRVRSEEDLDKAEAFFQELGLPTEWVE 92 (121)
T ss_pred --------------CCceeEEEEECCCHHHHHHHHHHHHHcCCCccccc
Confidence 12678999999 479999999999999997654
No 66
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.09 E-value=2e-09 Score=82.11 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=62.5
Q ss_pred EEEEEEEeCCHHHHHHHHHhc---cCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 88 MQQTMFRIKDPKVSLDFYSRV---LGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~v---LGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
++|+.|.|+|+++|++||+++ |||++..+. .+ .+ +.| ..++ ....+.|..+.+..
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~--~~-~~-~~~-~~~~-----------------~~~~~~l~~~~~~~ 58 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED--GP-GA-VGY-GKGG-----------------GGPDFWVTKPFDGE 58 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec--CC-ce-eEe-ccCC-----------------CCceEEEeccccCC
Confidence 579999999999999999999 699986543 11 22 223 2221 13456665432111
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecCCC
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P~d 212 (222)
. .. +.+..|++|.|+| +++++++++++|+++..+|.+
T Consensus 59 ~------~~-----~~~~~hi~f~v~~~~~v~~~~~~~~~~g~~~~~~~~~ 98 (123)
T cd07262 59 P------AT-----AGNGTHVAFAAPSREAVDAFHAAALAAGGTDEGAPGL 98 (123)
T ss_pred C------CC-----CCCceEEEEECCCHHHHHHHHHHHHHcCCccCCCCCC
Confidence 0 11 1244799999987 788999999999999888755
No 67
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.08 E-value=2.3e-09 Score=81.13 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=60.7
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
-+|+|+.|.|+|++++++||+++|||+.....+ ++ .++..++. ....+.+... .
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~~----------------~~~~~~~~~~---~- 55 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GI--VYLRATGS----------------EHHILRLRRS---D- 55 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CE--EEEECCCC----------------ccEEEEeccC---C-
Confidence 378999999999999999999999999875421 22 24442210 0122333210 0
Q ss_pred CCCCccCCCCCCCCCceeEEEEEe---CCHHHHHHHHHhCCCeEEecC
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKP 210 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~V---dDVdaa~~rL~~~GV~~v~~P 210 (222)
..++.|++|.| +|+++++++++++|+++..+|
T Consensus 56 -------------~~~~~~~~~~v~~~~~l~~~~~~l~~~G~~~~~~~ 90 (120)
T cd08362 56 -------------RNRLDVVSFSVASRADVDALARQVAARGGTVLSEP 90 (120)
T ss_pred -------------CCCCceEEEEeCCHHHHHHHHHHHHHcCCceecCC
Confidence 02567999999 568999999999999998765
No 68
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.08 E-value=2.7e-09 Score=80.82 Aligned_cols=95 Identities=17% Similarity=0.271 Sum_probs=60.3
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d 166 (222)
+|.|+.|.|+|++++.+||+ +|||++..+. + .. .+...++. ...+.+... . .
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~-~~--~~~~~~~~-----------------~~~~~~~~~--~-~- 53 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D-GL--ELRTAGND-----------------HRWARLLEG--A-R- 53 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C-ce--EEEecCCC-----------------ceEEEeecC--C-C-
Confidence 68999999999999999997 7999986542 1 11 23222210 123333211 0 0
Q ss_pred CCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCCcceEEE
Q 027489 167 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKAGSIHC 220 (222)
Q Consensus 167 ~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~m~~laF 220 (222)
. .....++.|.++|+++++++++++|++++.+|..+....++|
T Consensus 54 ---------~--~~~~~~~~~~~~d~~~~~~~l~~~Gi~~~~~~~~~~~~~~~~ 96 (112)
T cd08344 54 ---------K--RLAYLSFGIFEDDFAAFARHLEAAGVALAAAPPGADPDGVWF 96 (112)
T ss_pred ---------C--ceeeEEEEeEhhhHHHHHHHHHHcCCceecCCCcCCCCEEEE
Confidence 0 012234555668999999999999999987764444445544
No 69
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.04 E-value=2.3e-09 Score=80.33 Aligned_cols=83 Identities=24% Similarity=0.401 Sum_probs=57.4
Q ss_pred EEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCC
Q 027489 90 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 169 (222)
Q Consensus 90 Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~ 169 (222)
|+.|.|+|++++++||+++|||++..+.+ . ..++..+ +..+.+.....
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~-------------------~~~l~~~~~~~------- 48 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELA-------------------GLWICLMEEDS------- 48 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEec-------------------CeEEEeccCCC-------
Confidence 89999999999999999999999876532 1 1223322 23444432211
Q ss_pred ccCCCCCCCCCceeEEEEEe--CCHHHHHHHHHhCCCeEEec
Q 027489 170 KGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKK 209 (222)
Q Consensus 170 ~~y~~gn~~p~G~~HIaf~V--dDVdaa~~rL~~~GV~~v~~ 209 (222)
. .+ .+.++.|++|.| +|+++++++++++|+++...
T Consensus 49 --~-~~--~~~~~~hiaf~v~~~d~~~~~~~l~~~G~~~~~~ 85 (113)
T cd08345 49 --L-QG--PERTYTHIAFQIQSEEFDEYTERLKALGVEMKPE 85 (113)
T ss_pred --c-CC--CCCCccEEEEEcCHHHHHHHHHHHHHcCCccCCC
Confidence 0 00 113678999999 47999999999999998754
No 70
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.03 E-value=4.6e-09 Score=79.12 Aligned_cols=89 Identities=24% Similarity=0.412 Sum_probs=60.4
Q ss_pred EEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCCc
Q 027489 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (222)
Q Consensus 91 v~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~~ 170 (222)
+.|.|+|+++|++||+++|||++.... + .+.. +..++ +..+.+....+...
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~--~--~~~~--~~~~~------------------~~~~~l~~~~~~~~----- 52 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS--P--TFAL--FVLGS------------------GVKLGLWSRHTVEP----- 52 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC--C--ceEE--EEeCC------------------CcEEEEeeccccCC-----
Confidence 679999999999999999999976532 1 2322 22221 24566653322110
Q ss_pred cCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecCCC
Q 027489 171 GYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 171 ~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P~d 212 (222)
.... ..+..|++|.|+| +++++++++++|+++..+|.+
T Consensus 53 -~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~~~~~~ 93 (114)
T cd07261 53 -ASDA---TGGGSELAFMVDDGAAVDALYAEWQAKGVKIIQEPTE 93 (114)
T ss_pred -CCCC---CCCceEEEEEcCCHHHHHHHHHHHHHCCCeEecCccc
Confidence 0000 1356899999975 889999999999999988865
No 71
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.03 E-value=2.7e-09 Score=81.32 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=59.5
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC-C
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES-D 166 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~-d 166 (222)
|+|++|.|+|+++|++||+. |||++....+ ...+ ..+..++ +..|.|........ .
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~--~~~~--~~~~~~~------------------~~~l~l~~~~~~~~~~ 57 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEAD--DEPH--VEAVLPG------------------GVRLAWDTVESIRSFT 57 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcC--CCCc--EEEEeCC------------------CEEEEEEcccceeeec
Confidence 57999999999999999964 9999754321 1111 2222221 12333321100000 0
Q ss_pred CCCccCCCCCCCCCceeEEEEEeC---CHHHHHHHHHhCCCeEEecCCCCCc
Q 027489 167 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKA 215 (222)
Q Consensus 167 ~~~~~y~~gn~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v~~P~dG~m 215 (222)
+. .. ....+..|++|.|+ |+++++++++++|+++..+|.+..+
T Consensus 58 ~~---~~---~~~~~~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~ 103 (122)
T cd07235 58 PG---WT---PTGGHRIALAFLCETPAEVDALYAELVGAGYPGHKEPWDAPW 103 (122)
T ss_pred CC---CC---CCCCCcEEEEEEcCCHHHHHHHHHHHHHCCCCcCCCCccCCC
Confidence 00 00 00124468888765 8999999999999999988876554
No 72
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.02 E-value=5.2e-09 Score=92.14 Aligned_cols=98 Identities=22% Similarity=0.336 Sum_probs=67.3
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
..+++|+.|.|+|++++++||+++|||++..+.+ .+ .|+...+.. ....+.|....
T Consensus 2 i~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~~--~~~~~~~~~---------------~~~~l~l~~~~--- 57 (294)
T TIGR02295 2 ILRTGHVELRVTDLDKSREFYVDLLGFRETESDK----EY--IYLRGIEEF---------------QHHSLVLTKAP--- 57 (294)
T ss_pred CceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----Ce--EEEeccCcC---------------CceEEEeeeCC---
Confidence 4689999999999999999999999999876521 12 233211100 01234443210
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEeC---CHHHHHHHHHhCCCeEEecCCCCCcceEEE
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKAGSIHC 220 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v~~P~dG~m~~laF 220 (222)
+ .++.|++|.|+ |+++++++|+++|+++...+..+..+.++|
T Consensus 58 ----------~----~~~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~~~~~~~~ 102 (294)
T TIGR02295 58 ----------S----AALSYIGFRVSKEEDLDKAADFFQKLGHPVRLVRDGGQPEALRV 102 (294)
T ss_pred ----------C----cCccEEEEEeCCHHHHHHHHHHHHhcCCcEEeecCCCCceEEEE
Confidence 0 25789999997 789999999999999987665544454444
No 73
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.02 E-value=9.2e-09 Score=76.47 Aligned_cols=87 Identities=25% Similarity=0.319 Sum_probs=60.6
Q ss_pred EEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCCcc
Q 027489 92 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 171 (222)
Q Consensus 92 ~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~~~ 171 (222)
.|.|+|++++++||+++|||++..... ... +.++..+ +..++|....+...
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~--~~~~~~~-------------------~~~~~l~~~~~~~~------ 53 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPG--YAFLSRG-------------------GAQLMLSEHDGDEP------ 53 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCc--EEEEEeC-------------------CEEEEEeccCCCCC------
Confidence 489999999999999999999876542 122 2344432 35666654322110
Q ss_pred CCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCe-EEecCCC
Q 027489 172 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVE-FAKKPDG 212 (222)
Q Consensus 172 y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~-~v~~P~d 212 (222)
. ...+..|++|.|+|++++.++++++|++ +..+|..
T Consensus 54 ~-----~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~ 90 (112)
T cd08349 54 V-----PLGRGGSVYIEVEDVDALYAELKAKGADLIVYPPED 90 (112)
T ss_pred C-----CCCCcEEEEEEeCCHHHHHHHHHHcCCcceecCccC
Confidence 1 1124569999999999999999999999 5666654
No 74
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.02 E-value=9.6e-09 Score=78.02 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=59.2
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
.++.|+.|.|+|++++.+||++ |||++..+.+ + . .|+..++. ...+.+.. .+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~--~--~~~~~~~~-----------------~~~~~~~~-~~--- 53 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D--E--LYYRGYGT-----------------DPFVYVAR-KG--- 53 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C--e--EEEecCCC-----------------ccEEEEcc-cC---
Confidence 4789999999999999999999 9999865421 1 1 23332210 11222211 10
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecC
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 210 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P 210 (222)
. ..++.|++|.|+|.+++.+.++++|+.+...+
T Consensus 54 --------~----~~~~~~~af~v~~~~~~~~~~~~~g~~~~~~~ 86 (113)
T cd07267 54 --------E----KARFVGAAFEAASRADLEKAAALPGASVIDDL 86 (113)
T ss_pred --------C----cCcccEEEEEECCHHHHHHHHHcCCCeeecCC
Confidence 0 12678999999999999999999999987654
No 75
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=98.98 E-value=2.5e-09 Score=79.34 Aligned_cols=87 Identities=25% Similarity=0.387 Sum_probs=59.1
Q ss_pred EEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCCccC
Q 027489 93 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 172 (222)
Q Consensus 93 L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~~~y 172 (222)
|.|+|++++++||+++|||++....+ .+..+..+... .....++....... .
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~-----------------~~~~~~~~~~~~~~-------~ 52 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGFRF-----------------HDGVIEFLQFPDPP-------G 52 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETEEE-----------------EEEEEEEEEEESSS-------S
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEeccch-----------------hhhhHHHccCCccc-------c
Confidence 68999999999999999999988432 22222221100 01233444321110 0
Q ss_pred CCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCC
Q 027489 173 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 173 ~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~d 212 (222)
.+.+..|++|.|+|+++++++++++|++++.+|.+
T Consensus 53 -----~~~~~~~~~~~v~dv~~~~~~l~~~G~~~~~~~~~ 87 (108)
T PF12681_consen 53 -----PPGGGFHLCFEVEDVDALYERLKELGAEIVTEPRD 87 (108)
T ss_dssp -----SSSSEEEEEEEESHHHHHHHHHHHTTSEEEEEEEE
T ss_pred -----CCCceeEEEEEEcCHHHHHHHHHHCCCeEeeCCEE
Confidence 12367899999999999999999999999888765
No 76
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=98.98 E-value=1.4e-08 Score=77.19 Aligned_cols=87 Identities=28% Similarity=0.424 Sum_probs=59.1
Q ss_pred EEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCC
Q 027489 89 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 168 (222)
Q Consensus 89 ~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~ 168 (222)
.|+.|.|+|++++.+||+++||++..... + .+. .|.. .+. ...+.+..+ ...
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~--~--~~~-~~~~-~~~-----------------~~~~~~~~~--~~~--- 54 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVR--D--DYA-KFLL-EDP-----------------RLNFVLNER--PGA--- 54 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEeccc--C--Cee-EEEe-cCC-----------------ceEEEEecC--CCC---
Confidence 49999999999999999999999976542 1 121 2221 110 122323211 100
Q ss_pred CccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecCCC
Q 027489 169 FKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 169 ~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P~d 212 (222)
. ..+..|++|.|+| +++++++++++|+++...|..
T Consensus 55 ------~---~~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~ 92 (120)
T cd07254 55 ------P---GGGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDT 92 (120)
T ss_pred ------C---CCCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCc
Confidence 0 0267899999987 788999999999999877654
No 77
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=98.97 E-value=9.1e-09 Score=91.19 Aligned_cols=89 Identities=25% Similarity=0.348 Sum_probs=62.9
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
.++++|+.|.|+|++++++||+++|||++..+.+ . . .++...+.. ....+.+...
T Consensus 2 i~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~--~---~-~~~~~~~~~---------------~~~~~~l~~~---- 56 (303)
T TIGR03211 2 VMRLGHVELRVLDLEESLKHYTDVLGLEETGRDG--Q---R-VYLKAWDEW---------------DHYSVILTEA---- 56 (303)
T ss_pred cceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--c---e-EEEEecccc---------------ccceEeeccC----
Confidence 4689999999999999999999999999876532 1 1 233321100 0223433211
Q ss_pred CCCCCccCCCCCCCCCceeEEEEEeC---CHHHHHHHHHhCCCeEEecCC
Q 027489 165 SDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 165 ~d~~~~~y~~gn~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v~~P~ 211 (222)
. ..|+.|++|.|+ |+++++++|+++|+++...|.
T Consensus 57 ---------~----~~g~~hiaf~v~~~~dl~~~~~~l~~~G~~~~~~~~ 93 (303)
T TIGR03211 57 ---------D----TAGLDHMAFKVESEADLERLVKRLEAYGVGTGWIPA 93 (303)
T ss_pred ---------C----CCceeEEEEEeCCHHHHHHHHHHHHHcCCCeeeccC
Confidence 0 136789999998 799999999999999987664
No 78
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.95 E-value=2.5e-09 Score=99.74 Aligned_cols=105 Identities=12% Similarity=0.238 Sum_probs=73.5
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCC-----cEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEee
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM-----KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 159 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~-----~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~ 159 (222)
..+++|+++.|+|++.+++||+++|||+..+..+.++. +.....+..++ +...|+|..
T Consensus 178 l~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~-----------------g~v~ipLnE 240 (398)
T PLN02875 178 LRRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN-----------------EMVLLPLNE 240 (398)
T ss_pred cceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC-----------------CcEEEEecc
Confidence 45899999999999999999999999998876554321 12333444322 145677765
Q ss_pred cCCC---CC-CCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhC----CCeEEecC
Q 027489 160 NWGT---ES-DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERL----GVEFAKKP 210 (222)
Q Consensus 160 ~~g~---e~-d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~----GV~~v~~P 210 (222)
.... .+ ...|...+.| .|++||||.|+|+.+++++|+++ |++|+..|
T Consensus 241 P~~~~~~~SqI~eFL~~~~G----~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 241 PTFGTKRKSQIQTYLEHNEG----PGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred CCCCCCCcChHHHHHHhcCC----CCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 3211 11 0112112333 49999999999999999999999 99999866
No 79
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=98.93 E-value=1.7e-08 Score=77.13 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=55.1
Q ss_pred EEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCCc
Q 027489 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (222)
Q Consensus 91 v~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~~ 170 (222)
..|.|+|+++|++||++ |||++..+.+ . .+ .++..+ +..|+|......
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~--~-~~--~~~~~~-------------------~~~l~l~~~~~~------- 53 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQA--A-GY--MILRRG-------------------DLELHFFAHPDL------- 53 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCC--C-CE--EEEEcC-------------------CEEEEEEecCcC-------
Confidence 57999999999999999 9999876532 1 22 334432 346777643211
Q ss_pred cCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeE
Q 027489 171 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEF 206 (222)
Q Consensus 171 ~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~ 206 (222)
..+ ....|++|.|+|+++++++++++|+++
T Consensus 54 --~~~----~~~~~~~~~v~dvd~~~~~l~~~G~~~ 83 (120)
T cd08350 54 --DPA----TSPFGCCLRLPDVAALHAEFRAAGLPE 83 (120)
T ss_pred --CCC----CCcceEEEEeCCHHHHHHHHHHhCccc
Confidence 000 123589999999999999999999985
No 80
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.88 E-value=1.7e-08 Score=92.29 Aligned_cols=103 Identities=20% Similarity=0.213 Sum_probs=70.6
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
+.++|+.+.|+|++++++||.+.|||++.........+... .+..+ ...|+|....+..+
T Consensus 1 ~~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~~-~~~~G-------------------~~~l~L~~~~~~~s 60 (353)
T TIGR01263 1 DGFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKASH-VLRQG-------------------QINFVLTAPYSSDS 60 (353)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCceeEE-EEEeC-------------------CEEEEEecCCCCCc
Confidence 36899999999999999999999999998762222222111 12221 46788875432211
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCC
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~d 212 (222)
+ ...+.. ..+.|..|+||.|+|+++++++++++|++++.+|.+
T Consensus 61 -~-~~~~~~--~hg~gv~~iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~ 103 (353)
T TIGR01263 61 -P-AADFAA--KHGDGVKDVAFRVDDAAAAFEAAVERGAEPVQAPVE 103 (353)
T ss_pred -h-HHHHHH--hCCCceEEEEEEECCHHHHHHHHHHCCCEeccCCcc
Confidence 0 000111 012488999999999999999999999999988754
No 81
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=98.86 E-value=2.9e-08 Score=87.50 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=61.6
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
.++.|+.|.|+|+++|++||+++|||++.... +++ . .|+..++. +..+.|... +
T Consensus 2 ~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~--~~~--~-~~~~~~~~-----------------~~~~~l~~~-~--- 55 (286)
T TIGR03213 2 RGLGYLGIGVSDVDAWREFATEVLGMMVASEG--END--A-LYLRLDSR-----------------AHRIAVHPG-E--- 55 (286)
T ss_pred ceeeEEEEEeCCHHHHHHHHHhccCcccccCC--CCc--e-EEEEcCCC-----------------ceEEEEEEC-C---
Confidence 47899999999999999999999999975431 111 1 24343321 233444321 0
Q ss_pred CCCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecC
Q 027489 166 DPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKP 210 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P 210 (222)
..++.|++|.|+| ++++.++|+++|+++...|
T Consensus 56 -------------~~~~~~~~f~V~~~~~l~~~~~~L~~~Gv~~~~~~ 90 (286)
T TIGR03213 56 -------------SDDLAYAGWEVADEAGLDQVKEKLEKAGVAVTVAS 90 (286)
T ss_pred -------------cCCeeeEeeeeCCHHHHHHHHHHHHHcCCceEECC
Confidence 0256799999998 8899999999999998765
No 82
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=98.79 E-value=1.2e-07 Score=75.62 Aligned_cols=106 Identities=20% Similarity=0.217 Sum_probs=70.3
Q ss_pred CCCceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecC
Q 027489 82 ATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 161 (222)
Q Consensus 82 ~t~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~ 161 (222)
..+...+.|.-|.|.|++++++||.+|||+++....+..++.+ +.+..++. +. +..+ ....
T Consensus 4 ~~~~~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y--~~f~~~~~----~~-----------gG~l--~~~~ 64 (127)
T COG3324 4 AGEKGTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRY--AVFPADGA----GA-----------GGGL--MARP 64 (127)
T ss_pred cccCCccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceE--EEEECCCc----cc-----------ccee--ccCC
Confidence 3456678899999999999999999999999987644433333 33332221 00 1121 1110
Q ss_pred CCCCCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCCC-cceEE
Q 027489 162 GTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-AGSIH 219 (222)
Q Consensus 162 g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG~-m~~la 219 (222)
. +..+ .+..++.|.|+|+|+..+|.+++|..+++++..-+ ...++
T Consensus 65 ~---------~~p~----~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a 110 (127)
T COG3324 65 G---------SPPG----GGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPGGGRIA 110 (127)
T ss_pred c---------CCCC----CCCEEEEEecCChHHHHHHHHhcCCeEEecccccCCceEEE
Confidence 0 1111 13358999999999999999999999999887644 44443
No 83
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.76 E-value=1.3e-07 Score=71.23 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=58.2
Q ss_pred EEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCCc
Q 027489 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (222)
Q Consensus 91 v~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~~ 170 (222)
|.|.|+|++++.+||+++|||++..+ . +..+ .++..+ +..++|...........
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~-~--~~~~--~~~~~~-------------------~~~~~l~~~~~~~~~~~-- 55 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSAD-S--NDGV--AFFQLG-------------------GLVLALFPREELAKDAG-- 55 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceeccc-C--CCce--EEEEcC-------------------CeEEEEecchhhhhhcC--
Confidence 67999999999999999999998765 1 1122 344432 34566653221100000
Q ss_pred cCCCCCCCCCceeEEEEEe---CCHHHHHHHHHhCCCeEEecCCC
Q 027489 171 GYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 171 ~y~~gn~~p~G~~HIaf~V---dDVdaa~~rL~~~GV~~v~~P~d 212 (222)
..... ...+..|++|.+ +|+++++++++++|+++..+|..
T Consensus 56 -~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~ 98 (121)
T cd07251 56 -VPVPP-PGFSGITLAHNVRSEEEVDAVLARAAAAGATIVKPPQD 98 (121)
T ss_pred -CCCCC-CCccceEEEEEcCCHHHHHHHHHHHHhCCCEEecCCcc
Confidence 00000 011334566655 68999999999999999877754
No 84
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=98.74 E-value=1.2e-07 Score=72.47 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=52.5
Q ss_pred EEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCCCCc
Q 027489 91 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 170 (222)
Q Consensus 91 v~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~~~~ 170 (222)
..|.|+|+++|++||++ |||++..+. + .+ .++..+ +..+.|... ..+.
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~--~--~~--~~l~~~-------------------~~~l~l~~~-~~~~----- 52 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWEN--D--NL--AYFRLG-------------------NCAFYLQDY-YVKD----- 52 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecC--C--CE--EEEEcC-------------------CEEEEeecC-CCcc-----
Confidence 35889999999999987 999997652 2 22 444433 234444321 1100
Q ss_pred cCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEE
Q 027489 171 GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFA 207 (222)
Q Consensus 171 ~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v 207 (222)
. .+..|++|.|+|+++++++|+++|+++.
T Consensus 53 -~-------~~~~~~~~~v~did~~~~~l~~~G~~~~ 81 (113)
T cd08356 53 -W-------AENSMLHLEVDDLEAYYEHIKALGLPKK 81 (113)
T ss_pred -c-------ccCCEEEEEECCHHHHHHHHHHcCCccc
Confidence 0 1225899999999999999999999753
No 85
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=1e-05 Score=65.21 Aligned_cols=94 Identities=22% Similarity=0.293 Sum_probs=62.8
Q ss_pred EEEeC-CHHHHHHHHHhccCcEEEEEecCCCC----------cEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeec
Q 027489 92 MFRIK-DPKVSLDFYSRVLGMSLLKRLDFPEM----------KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (222)
Q Consensus 92 ~L~V~-DlekSi~FY~~vLGf~l~~~~~~p~~----------~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~ 160 (222)
.|.++ |.+++++||+++||.++..+..++++ ...+.-|..+ +..|.+...
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~-------------------g~~im~sd~ 65 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG-------------------GSTIMLSDA 65 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC-------------------CEEEEEecC
Confidence 47788 99999999999999999998887763 2222222222 234444332
Q ss_pred CCCCCCCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCCC
Q 027489 161 WGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG 213 (222)
Q Consensus 161 ~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~dG 213 (222)
.+... .+.++ .--.-|-+.++|++++++++.+.|++++.++++.
T Consensus 66 ~~~~~------~~~~~---~~s~~l~~~~~d~da~f~~a~~aGa~v~mpl~~~ 109 (136)
T COG2764 66 FPDMG------ATEGG---GTSLSLDLYVEDVDAVFERAAAAGATVVMPLEDT 109 (136)
T ss_pred CCccC------cccCC---CeeEEEEEEehHHHHHHHHHHhcCCeEEecchhc
Confidence 22111 22222 1123567788899999999999999999998763
No 86
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.35 E-value=2e-06 Score=70.82 Aligned_cols=98 Identities=15% Similarity=0.282 Sum_probs=53.6
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCC
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~ 167 (222)
|+|+.+.|+|++++.++|++.|||++......+.++.....+-.+ ..+|||+...+....+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~-------------------~~YlEli~i~~~~~~~ 61 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG-------------------DGYLELIAIDPEAPAP 61 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S-------------------SSEEEEEEES-HHHST
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC-------------------CceEEEEEeCCccccc
Confidence 689999999999999999999999999877666533333333332 2399998642211111
Q ss_pred CCccCCCC--C-CCCCceeEEEEEeCCHHHHHHHHHhCCCe
Q 027489 168 DFKGYHNG--N-SEPRGFGHIGITVDDVYKACERFERLGVE 205 (222)
Q Consensus 168 ~~~~y~~g--n-~~p~G~~HIaf~VdDVdaa~~rL~~~GV~ 205 (222)
.. +...+ . ....|+.++|+.++|+++..+++++.|+.
T Consensus 62 ~~-~~~~~~~~~~~~~g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 62 DR-GRWFGLDRLAGGEGLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp GG-GT-TTTHHHHT--EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred cc-ccceechhhcCCCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 00 00000 0 01258899999999999999999999986
No 87
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.34 E-value=6.3e-07 Score=78.16 Aligned_cols=89 Identities=28% Similarity=0.511 Sum_probs=67.4
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCCC
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 167 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d~ 167 (222)
+.+++|+|.|+++|+.||.+.|||++... +.++....|+|+++ ...|||+++.+.-.
T Consensus 150 v~~V~l~VgdL~ks~kyw~~~lgM~ilek----eek~t~~~mgYgd~-----------------q~~LElt~~~~~id-- 206 (299)
T KOG2943|consen 150 VLQVMLNVGDLQKSIKYWEKLLGMKILEK----EEKYTRARMGYGDE-----------------QCVLELTYNYDVID-- 206 (299)
T ss_pred eEEEEEEehhHHHHHHHHHHHhCcchhhh----hhhhhhhhhccCCc-----------------ceEEEEEeccCccc--
Confidence 67899999999999999999999999875 23456677898763 57899998865432
Q ss_pred CCccCCCCCCCCCceeEEEEEe--CCHHHHHHHHHhCCCeEEec
Q 027489 168 DFKGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKK 209 (222)
Q Consensus 168 ~~~~y~~gn~~p~G~~HIaf~V--dDVdaa~~rL~~~GV~~v~~ 209 (222)
+.. |++.|+|.+ +|+..+.+.++..+-++..+
T Consensus 207 ----~~k------g~griafaip~d~~~~l~e~iK~~n~~i~~~ 240 (299)
T KOG2943|consen 207 ----RAK------GFGRIAFAIPTDDLPKLQEAIKSANGTILTP 240 (299)
T ss_pred ----ccc------cceeEEEeccccccccHHHHHHHhccccccc
Confidence 332 567777776 57888888888886555443
No 88
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.32 E-value=1.1e-05 Score=71.42 Aligned_cols=95 Identities=17% Similarity=0.306 Sum_probs=68.5
Q ss_pred cCCCceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeec
Q 027489 81 EATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (222)
Q Consensus 81 ~~t~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~ 160 (222)
+.+..+.+..+.|.|+|+++...||+++||+++..+.+ ..+-++.++ ...|.|.++
T Consensus 4 ~~~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg------------------~~LL~L~q~ 59 (265)
T COG2514 4 ALTTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG------------------TPLLTLEQF 59 (265)
T ss_pred ccCCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC------------------EEEEEEEeC
Confidence 34567899999999999999999999999999988643 123455543 245666554
Q ss_pred CCCCCCCCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEe
Q 027489 161 WGTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAK 208 (222)
Q Consensus 161 ~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~ 208 (222)
......+ +. .-|+.|++|.+++ +..++.++.+.|+.+..
T Consensus 60 ~~a~~~~----~~-----~aGLyH~AfLlP~r~~L~~~l~hl~~~~~~l~G 101 (265)
T COG2514 60 PDARRPP----PR-----AAGLYHTAFLLPTREDLARVLNHLAEEGIPLVG 101 (265)
T ss_pred CCCCCCC----cc-----ccceeeeeeecCCHHHHHHHHHHHHhcCCcccc
Confidence 3322110 11 1388999999986 77788999999998863
No 89
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=98.20 E-value=6.3e-06 Score=64.68 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=59.8
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 165 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~ 165 (222)
..+-|++|.|.|++++.+||.++||++.....+.- ..+-|.|. ...++|........
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd~w---vdfDfyGH--------------------Q~v~Hl~~q~~~~~ 59 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTDTW---VDFDFYGH--------------------QVVAHLTPQPDSQG 59 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccceE---EEeeeccc--------------------EEEEEecCCccccc
Confidence 44569999999999999999999999986543210 11122231 23444543221111
Q ss_pred CCCCccCCCCCCCCCceeEE--EEEeCCHHHHHHHHHhCCCeEEecCC
Q 027489 166 DPDFKGYHNGNSEPRGFGHI--GITVDDVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 166 d~~~~~y~~gn~~p~G~~HI--af~VdDVdaa~~rL~~~GV~~v~~P~ 211 (222)
+.. . .|..- ..-|+ .+.++|..++.+||+++|+.+..+|.
T Consensus 60 ~g~---V-~~~~v--~~pHfGvVl~~edW~alaerlea~gi~~~i~P~ 101 (138)
T COG3565 60 SGK---V-DGHGV--PPPHFGVVLPVEDWFALAERLEAAGIPFHIPPK 101 (138)
T ss_pred Ccc---c-CCCCC--CCccceEEEEHHHHHHHHHHHHHcCCCcccCce
Confidence 100 1 11101 12244 45678999999999999999988873
No 90
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=98.15 E-value=7.1e-05 Score=58.28 Aligned_cols=91 Identities=12% Similarity=0.081 Sum_probs=55.0
Q ss_pred EEEe-CCHHHHHHHHHhccCcEEEEEecCCCC----------cEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeec
Q 027489 92 MFRI-KDPKVSLDFYSRVLGMSLLKRLDFPEM----------KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (222)
Q Consensus 92 ~L~V-~DlekSi~FY~~vLGf~l~~~~~~p~~----------~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~ 160 (222)
.|.+ .|.+++++||+++||+++......++. .+.+..+..+ +..|.+...
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~-------------------g~~l~~~d~ 64 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIG-------------------GQRLMASDG 64 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEEC-------------------CEEEEEEcC
Confidence 4677 999999999999999999876543221 1112222221 234444322
Q ss_pred CCCCCCCCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecCCCC
Q 027489 161 WGTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGG 213 (222)
Q Consensus 161 ~g~e~d~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P~dG 213 (222)
.. +. . ... .+-.++++.|+| +++++++|.+.| +++.+|.+.
T Consensus 65 ~~-~~----~-~~~-----~~~~~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~ 108 (128)
T cd06588 65 GP-GF----P-FTF-----GNGISLSVECDSEEEADRLFEALSEGG-TVLMPLQKT 108 (128)
T ss_pred CC-CC----C-CCC-----CCCEEEEEECCCHHHHHHHHHHHhcCC-eEeccchhc
Confidence 11 10 0 101 123579999986 777889987776 777777654
No 91
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.96 E-value=9e-06 Score=74.31 Aligned_cols=106 Identities=19% Similarity=0.314 Sum_probs=71.2
Q ss_pred ceEEEEEEEEeC--CHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCC
Q 027489 85 GYFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWG 162 (222)
Q Consensus 85 ~~~l~Hv~L~V~--DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g 162 (222)
-..++|+...|+ .++....||+++|||+....++.++ +....+-. .+.+....|.|.-|..
T Consensus 165 ~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~-p~tgl~Sr----------------am~Sp~G~vrlplN~s 227 (363)
T COG3185 165 LTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPG-PITGLRSR----------------AMVSPCGKVRLPLNES 227 (363)
T ss_pred ceeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccC-CcccEEEe----------------eEecCCCcEEeecccC
Confidence 358999986665 8999999999999999998877764 22222110 1111223455554432
Q ss_pred CCCCCCC-ccC---CCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCCC
Q 027489 163 TESDPDF-KGY---HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 163 ~e~d~~~-~~y---~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~d 212 (222)
.. +..+ ..+ ..| .|++||+|.++|+.+++++++++|+++...|+.
T Consensus 228 ~~-~~sqi~efl~~y~G----~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~t 276 (363)
T COG3185 228 AD-DKSQIGEFLREYRG----EGIQHIAFGTDDIYATVAALRERGVKFLPIPET 276 (363)
T ss_pred CC-chhHHHHHHHHhCC----CcceEEEecccHHHHHHHHHHHcCCccCCCchh
Confidence 21 1110 001 123 489999999999999999999999999987753
No 92
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=97.82 E-value=2.7e-05 Score=57.42 Aligned_cols=34 Identities=29% Similarity=0.493 Sum_probs=30.7
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDF 119 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~ 119 (222)
++++|++|.|+|+++|++||+++|||++......
T Consensus 1 ~~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~ 34 (138)
T COG0346 1 MGIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVN 34 (138)
T ss_pred CceEEEEEeeCCHhHhHHHHHhhcCCeeeeeccc
Confidence 4689999999999999999999999999887543
No 93
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=97.52 E-value=0.00066 Score=54.00 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=63.2
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCCCC
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 166 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e~d 166 (222)
.+.-++|.|+|+++|.+||+. |||+.-..+... . ...++-.+ ...+-|..+.-
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde--~-a~~mi~~~-------------------ni~vMLL~~~~---- 55 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDE--D-AACMIISD-------------------NIFVMLLEEAR---- 55 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCcccc--c-ceeEEEec-------------------cEEEEEeccHH----
Confidence 455689999999999999965 999986544321 1 12222211 23333432110
Q ss_pred CCCccCCCCC---CCCCceeEEEEEeC---CHHHHHHHHHhCCCeEEecCCC-CCcceEEE
Q 027489 167 PDFKGYHNGN---SEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG-GKAGSIHC 220 (222)
Q Consensus 167 ~~~~~y~~gn---~~p~G~~HIaf~Vd---DVdaa~~rL~~~GV~~v~~P~d-G~m~~laF 220 (222)
|..+.++. .....---||+.+. +||+++++..+.|.+..++|.+ |.|.+..|
T Consensus 56 --fq~F~~~~i~dt~~s~evli~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~f 114 (133)
T COG3607 56 --FQTFTKRQIADTTKSREVLISLSAGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSF 114 (133)
T ss_pred --hhhhcccccccccCCceEEEEeccCcHHHHHHHHHHHHHcCCCCCCCccccccccceee
Confidence 00011100 00011235788875 4999999999999999888876 78887766
No 94
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00048 Score=62.51 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=65.1
Q ss_pred CCceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCC--CcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeec
Q 027489 83 TNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (222)
Q Consensus 83 t~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~--~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~ 160 (222)
-+-.+++||.+.|.|-+.+..||+..|||+.....+... ..+..+-+.. ++...-+...
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~-------------------g~~vFv~~s~ 73 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQ-------------------GKIVFVFNSA 73 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhc-------------------CCEEEEEecC
Confidence 346799999999999999999999999999765322111 1111000111 1122222221
Q ss_pred CCCCCCCCCccCCCCC---CCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCC
Q 027489 161 WGTESDPDFKGYHNGN---SEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 161 ~g~e~d~~~~~y~~gn---~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~ 211 (222)
.++.. +. | |+ ....|.-.+||.|+|.+++...+.++|+.+..+|.
T Consensus 74 ~~p~~-~~---~--G~~l~~HgdgvkdvafeVeD~da~~~~~va~Ga~v~~~p~ 121 (381)
T KOG0638|consen 74 YNPDN-SE---Y--GDHLVKHGDGVKDVAFEVEDADAIFQEAVANGAKVVRPPW 121 (381)
T ss_pred CCCCc-hh---h--hhhhhhcccchhceEEEecchHHHHHHHHHcCCcccCCcc
Confidence 11111 00 1 10 01135678999999999999999999999998883
No 95
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.00019 Score=65.06 Aligned_cols=114 Identities=18% Similarity=0.279 Sum_probs=75.5
Q ss_pred ccCCCceEEEEEEEEeC--CHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEE
Q 027489 80 DEATNGYFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIEL 157 (222)
Q Consensus 80 ~~~t~~~~l~Hv~L~V~--DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL 157 (222)
-|.....+++|+...++ .++.+.+||.++|||...+..+.+. ...-|-+ .+...+-+...+|.+
T Consensus 171 l~~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~--v~te~Sa------------Lrs~vlan~~esi~m 236 (381)
T KOG0638|consen 171 LPKGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQ--VHTEYSA------------LRSIVLANYEESIKM 236 (381)
T ss_pred CCccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcch--hhhHHHH------------HHHHHHhcCCccEEE
Confidence 45567889999999999 5889999999999999887655322 1000000 011111122345556
Q ss_pred eecCCCCCC------CCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCC
Q 027489 158 THNWGTESD------PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 158 ~~~~g~e~d------~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~ 211 (222)
.-|.+.... ..+..|+.| .|.+||++.++||-.+.+.++++|++|...|.
T Consensus 237 pinEp~~G~k~ksQIqeyv~y~gG----~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps 292 (381)
T KOG0638|consen 237 PINEPAPGKKKKSQIQEYVEYHGG----AGVQHIALNTEDIIEAIRGLRARGGEFLSPPS 292 (381)
T ss_pred eccCCCCCCccHHHHHHHHHhcCC----CceeeeeecchHHHHHHHHHHhcCCccccCCH
Confidence 544332211 111125555 49999999999999999999999999998874
No 96
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=97.03 E-value=0.005 Score=57.84 Aligned_cols=105 Identities=18% Similarity=0.234 Sum_probs=64.1
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCC--cEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCC--
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM--KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT-- 163 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~--~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~-- 163 (222)
++||-+.|.|.+++..||+..|||+.........+ ....+-+.-+ ...+-|+.....
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g-------------------~i~fv~~~~~~~~~ 61 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG-------------------DLVFLFTAPYSPKI 61 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC-------------------CEEEEEeCCCCCcc
Confidence 58999999999999999999999998764332111 1111222221 233334332111
Q ss_pred CC--CCCCcc-CCCC----------CCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecCC
Q 027489 164 ES--DPDFKG-YHNG----------NSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD 211 (222)
Q Consensus 164 e~--d~~~~~-y~~g----------n~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P~ 211 (222)
+. +....+ .+.. ...+.|..-+||.|+|++++++++.++|+..+.+|.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~ 122 (398)
T PLN02875 62 GAGDDDPASTAPHPSFSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPT 122 (398)
T ss_pred ccccccccccccccccCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCc
Confidence 00 000000 0000 011247889999999999999999999999988775
No 97
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=97.01 E-value=0.0052 Score=54.61 Aligned_cols=88 Identities=20% Similarity=0.409 Sum_probs=57.9
Q ss_pred CCCceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecC
Q 027489 82 ATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 161 (222)
Q Consensus 82 ~t~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~ 161 (222)
...+..|.||-|.|.|++++..||+++|||+...+ .+. -.|+..++- +..|.+ ..|
T Consensus 163 ~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~--~~~----A~F~a~G~Y-----------------HHHia~-N~W 218 (265)
T COG2514 163 LPAGTIIGHVHLKVADLEEAEQFYEDVLGLEVTAR--GPS----ALFLASGDY-----------------HHHLAA-NTW 218 (265)
T ss_pred CCCCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeec--CCc----ceEEecCCc-----------------ceeEEE-ecc
Confidence 44588999999999999999999999999999876 232 247776641 344433 345
Q ss_pred CCCCCCCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHH
Q 027489 162 GTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERF 199 (222)
Q Consensus 162 g~e~d~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL 199 (222)
..... ..++....|+..+.+.+++ ++....++
T Consensus 219 ~s~~~------~~~~~~~~GLa~~~i~~~~~~~l~~~~~~~ 253 (265)
T COG2514 219 NSRGA------RPRNANASGLAWLEIHTPDPEKLDATGTRL 253 (265)
T ss_pred ccCCC------CCCCCCCCCcceEEEEcCCcccccccccce
Confidence 44321 1111122578888888887 44444444
No 98
>PRK10148 hypothetical protein; Provisional
Probab=96.65 E-value=0.074 Score=43.02 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=22.7
Q ss_pred EEEEeC-CHHHHHHHHHhccCcEEEEEec
Q 027489 91 TMFRIK-DPKVSLDFYSRVLGMSLLKRLD 118 (222)
Q Consensus 91 v~L~V~-DlekSi~FY~~vLGf~l~~~~~ 118 (222)
.-|... |.+++++||+++||.++.....
T Consensus 5 pyL~f~g~a~eAi~FY~~~Fgae~~~~~~ 33 (147)
T PRK10148 5 PYLSFAGNCADAIAYYQQTLGAELLYKIS 33 (147)
T ss_pred EEEEeCCCHHHHHHHHHHHhCCEEEEEEE
Confidence 346665 8999999999999999876653
No 99
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=96.22 E-value=0.026 Score=52.14 Aligned_cols=90 Identities=19% Similarity=0.341 Sum_probs=57.1
Q ss_pred CCCceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecC
Q 027489 82 ATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 161 (222)
Q Consensus 82 ~t~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~ 161 (222)
.+-.-+.-|++|.|+|+++|.+||+.+||+.. +. ++. . .-+ ++ ..+-+....
T Consensus 242 ~~~~~~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs----de~-a-~cm--~d-------------------tI~vMllt~ 293 (357)
T PRK01037 242 EVFSPKTFSVVLEVQDLRRAKKFYSKMFGLEC-WD----GDK-L-FLL--GK-------------------TSLYLQQTK 293 (357)
T ss_pred hccCCceEEEEeeeCCHHHHHHHHHHHhCCCC-CC----CCc-c-ccc--cC-------------------cEEEEEecC
Confidence 34455778999999999999999999988874 22 211 1 112 11 122222211
Q ss_pred CCCCCCCCccCCCCCCCCCceeEEEEEeCC---HHHHHHHHHhCCCeEEecCCC
Q 027489 162 GTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG 212 (222)
Q Consensus 162 g~e~d~~~~~y~~gn~~p~G~~HIaf~VdD---Vdaa~~rL~~~GV~~v~~P~d 212 (222)
. |+ ... .-.-+|+.+++ ||+++++..++|.....+|+|
T Consensus 294 ~---D~-----~~~-----~evLl~Ls~~Sre~VD~lv~~A~aaGG~~~~~~~D 334 (357)
T PRK01037 294 A---EK-----KNR-----GTTTLSLELECEHDFVRFLRRWEMLGGELGEQADG 334 (357)
T ss_pred C---CC-----CCc-----ceEEEEeccCCHHHHHHHHHHHHHcCCCCCCCccc
Confidence 1 11 111 22458899975 899999999999977666655
No 100
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=96.21 E-value=0.091 Score=41.67 Aligned_cols=38 Identities=29% Similarity=0.629 Sum_probs=27.6
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEec
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY 131 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~ 131 (222)
|.+-.|+|+|-+.-++||+++|||+++.... .++++|.
T Consensus 1 f~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~ 38 (125)
T PF14506_consen 1 FIIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGD 38 (125)
T ss_dssp -EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-
T ss_pred CcCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecC
Confidence 3466899999999999999999999987632 2456665
No 101
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=94.47 E-value=0.38 Score=38.97 Aligned_cols=95 Identities=23% Similarity=0.310 Sum_probs=57.2
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
...++|+-+.|.|.++...++ +.|||+...+.. +-...+ | .-+ ...+-|.. .+.
T Consensus 7 ~~G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hr--sk~v~l-~-rQG-------------------~I~~vln~--ep~ 60 (139)
T PF14696_consen 7 LDGFDFVEFAVPDAQALAQLF-TALGFQPVARHR--SKDVTL-Y-RQG-------------------DINFVLNS--EPD 60 (139)
T ss_dssp EEEEEEEEEE-SSTTSCHHHH-CCCCEEEECCEC--CCSEEE-E-EET-------------------TEEEEEEE--EST
T ss_pred CCCeEEEEEecCCHHHHHHHH-HHhCcceEEecC--CcceEE-E-EeC-------------------CEEEEEeC--CCc
Confidence 457899999999977777777 679999886532 212222 1 211 23343332 211
Q ss_pred CC-CCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecC
Q 027489 165 SD-PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 210 (222)
Q Consensus 165 ~d-~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P 210 (222)
+. .++...| | .+..-++|.|+|.++++++..++|.+.+.+|
T Consensus 61 s~a~~~~~~H-G----~sv~aiafrV~Da~~A~~rA~~~GA~~~~~~ 102 (139)
T PF14696_consen 61 SFAAEFAAQH-G----PSVCAIAFRVDDAAAAYERAVALGAEPVQEP 102 (139)
T ss_dssp SCHHHHHHHH-S----SEEEEEEEEES-HHHHHHHHHHTT--EEEEE
T ss_pred chHHHHHHhc-C----CEEEEEEEEeCCHHHHHHHHHHcCCcCcccC
Confidence 10 0000011 2 4788999999999999999999999988776
No 102
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=92.65 E-value=0.59 Score=36.05 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=32.1
Q ss_pred CceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEec
Q 027489 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGY 131 (222)
Q Consensus 84 ~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~ 131 (222)
..-.++|+++.|.|++++.+-.++ .|.++.........+....|+..
T Consensus 84 ~~~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~D 130 (142)
T cd08353 84 NALGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRG 130 (142)
T ss_pred CCCCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEEC
Confidence 355788999999999999999976 68887653211112234455554
No 103
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=89.88 E-value=4.9 Score=31.07 Aligned_cols=17 Identities=35% Similarity=0.677 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHhccCcE
Q 027489 96 KDPKVSLDFYSRVLGMS 112 (222)
Q Consensus 96 ~DlekSi~FY~~vLGf~ 112 (222)
.+.++|++||+++||-.
T Consensus 11 g~a~eA~~fY~~vf~~~ 27 (116)
T PF06983_consen 11 GNAEEALEFYKEVFGGS 27 (116)
T ss_dssp S-HHHHHHHHHHHSTTE
T ss_pred CCHHHHHHHHHHHcCCC
Confidence 68999999999999854
No 104
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=88.92 E-value=1.7 Score=36.15 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=35.4
Q ss_pred CCceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcE-EEEEEecC
Q 027489 83 TNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYE 132 (222)
Q Consensus 83 t~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~-~l~flg~~ 132 (222)
+....++||++.|+|++++..-.++ +|.+...+.. +|+. .++|+-..
T Consensus 111 ~~prGfgHIci~V~di~sac~~lke-kGV~f~Kk~~--dGk~K~iaF~~dp 158 (170)
T KOG2944|consen 111 KEPRGFGHICIEVDDINSACERLKE-KGVRFKKKLK--DGKMKPIAFLHDP 158 (170)
T ss_pred CCCCccceEEEEeCCHHHHHHHHHH-hCceeeecCC--CccccceeEEECC
Confidence 3346899999999999999999965 8999766654 4444 46676643
No 105
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=87.54 E-value=3.4 Score=31.86 Aligned_cols=57 Identities=9% Similarity=-0.029 Sum_probs=40.1
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecC
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 161 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~ 161 (222)
-.+.|+++.|.|++++.+-.++ .|.++.............+|+...+ +..|||.+..
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~------------------G~~ie~~~~~ 124 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYG------------------DSLHTLVDRK 124 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccC------------------CcEEEEEecC
Confidence 4588999999999999888865 7999876544322334555655433 5789998643
No 106
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=86.93 E-value=0.89 Score=33.95 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=22.1
Q ss_pred eEEEEEeCCHHHHHHHHHh-CCCeEEe
Q 027489 183 GHIGITVDDVYKACERFER-LGVEFAK 208 (222)
Q Consensus 183 ~HIaf~VdDVdaa~~rL~~-~GV~~v~ 208 (222)
+|++|.|+|++++.+.+.+ .|+....
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~ 27 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWE 27 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEE
Confidence 5999999999999999999 8987643
No 107
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=86.24 E-value=3.8 Score=30.24 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=32.6
Q ss_pred CceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEec-CCCCcEEEEEEec
Q 027489 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLD-FPEMKFSLYFLGY 131 (222)
Q Consensus 84 ~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~-~p~~~~~l~flg~ 131 (222)
..-.+.|+++.|.|++++.+..++ .|.++..... .+.++...+|+..
T Consensus 69 ~~~g~~h~~f~v~d~~~~~~~l~~-~G~~~~~~~~~~~~~g~~~~~~d~ 116 (128)
T cd07249 69 RGEGLHHIAFEVDDIDAALARLKA-QGVRLLQEGPRIGAGGKRVAFLHP 116 (128)
T ss_pred CCCceEEEEEEeCCHHHHHHHHHH-CCCeeeccCCCccCCCCEEEEEec
Confidence 356688999999999999998865 6888876543 2223344455553
No 108
>PLN02367 lactoylglutathione lyase
Probab=85.97 E-value=3.7 Score=36.05 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=39.3
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeec
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~ 160 (222)
..++|+++.|.|++++.+-.++ .|.++........+ ...+|+...+ +..|||.+.
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~g~~-~riaFIkDPD------------------Gn~IEL~e~ 222 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKKPNDGKM-KGIAFIKDPD------------------GYWIEIFDL 222 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeCCccCCc-eEEEEEECCC------------------CCEEEEEec
Confidence 4799999999999999999955 99998754332221 2345665433 578999854
No 109
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=85.56 E-value=2.1 Score=31.38 Aligned_cols=29 Identities=28% Similarity=0.474 Sum_probs=25.3
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEec
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKK 209 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~ 209 (222)
+++|+++.|+|++++.+.+++ .|.++...
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~ 32 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIRE 32 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeee
Confidence 678999999999999999985 79887644
No 110
>PRK11478 putative lyase; Provisional
Probab=85.14 E-value=6.1 Score=29.50 Aligned_cols=29 Identities=7% Similarity=0.104 Sum_probs=24.1
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEE
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLK 115 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~ 115 (222)
..+.|+++.|.|+++..+--.+ .|.++..
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~ 102 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEA 102 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeec
Confidence 4578999999999999887755 7998764
No 111
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=82.98 E-value=2.1 Score=31.69 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=26.1
Q ss_pred ceeEEEEEeCCHHHHHHHHHhCCCeEEecC
Q 027489 181 GFGHIGITVDDVYKACERFERLGVEFAKKP 210 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P 210 (222)
++.|+++.|.|++++.+.++..|.++....
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~~~ 31 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVREEG 31 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEeec
Confidence 678999999999999999998999886543
No 112
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=82.26 E-value=12 Score=34.84 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=59.7
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeecCCCC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 164 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~~g~e 164 (222)
...+.++-+.|+|++.+..=|-..|||+...+.... ...++ . ...|.|+-|....
T Consensus 20 ~~GfeFvEf~~~d~~~~l~~l~~~lGF~~~~~Hrsk--~v~l~--r---------------------QGdinlvvn~~~~ 74 (363)
T COG3185 20 TDGFEFVEFAVPDPQEALGALLGQLGFTAVAKHRSK--AVTLY--R---------------------QGDINLVVNAEPD 74 (363)
T ss_pred CCceeEEEEecCCHHHHHHHHHHHhCcccccccccc--ceeEE--E---------------------eCCEEEEEcCCCc
Confidence 556778889999997666666688999987653321 12221 1 1234444443322
Q ss_pred C-CCCCccCCCCCCCCCceeEEEEEeCCHHHHHHHHHhCCCeEEecC
Q 027489 165 S-DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 210 (222)
Q Consensus 165 ~-d~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~~rL~~~GV~~v~~P 210 (222)
+ ..++ +. ..+.+..-++|.|+|...+.+|.+++|.+....+
T Consensus 75 s~a~~f--~~---~Hgps~~a~a~~V~DA~~A~a~A~a~gA~~~~~~ 116 (363)
T COG3185 75 SFAAEF--LD---KHGPSACAMAFRVDDAEQALARALALGARTIDTE 116 (363)
T ss_pred chhhHH--HH---hcCCchheeEEeeCCHHHHHHHHHHcCCccccCC
Confidence 1 0111 10 1124677899999999999999999999544433
No 113
>PRK10291 glyoxalase I; Provisional
Probab=81.05 E-value=8 Score=29.23 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=36.6
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEe-cCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEee
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRL-DFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 159 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~-~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~ 159 (222)
-.+.|+++.|.|++++.+-.++ .|.++.... +.+.+....+|+...+ +..|||..
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPd------------------G~~iel~~ 119 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPD------------------GYKIELIE 119 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCC------------------CCEEEEEE
Confidence 3688999999999998888855 788876421 2222323345555332 57899975
No 114
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=80.43 E-value=4.8 Score=29.35 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=26.7
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEecCC
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKKPD 211 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~P~ 211 (222)
+++|+.+.|+|+++..+-+++ .|.++...+.
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~ 34 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGE 34 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecccc
Confidence 678999999999999999988 7988776553
No 115
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=80.23 E-value=9.5 Score=32.02 Aligned_cols=55 Identities=18% Similarity=0.153 Sum_probs=37.7
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecCCCCCCCCCCcccceeecCCCcEEEEeec
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 160 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~~~~~~p~d~~~~~~w~~~~~~~IEL~~~ 160 (222)
-.+.|+++.|.|++++.+..++ .|.++...... ......+|+...+ +..|||...
T Consensus 120 ~G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~~-~~~~~~~fi~DPd------------------G~~IEl~e~ 174 (185)
T PLN03042 120 RGFGHIGITVDDVYKACERFEK-LGVEFVKKPDD-GKMKGLAFIKDPD------------------GYWIEIFDL 174 (185)
T ss_pred CCccEEEEEcCCHHHHHHHHHH-CCCeEEeCCcc-CCceeEEEEECCC------------------CCEEEEEEC
Confidence 3689999999999999999865 89988753221 1122345554332 578998753
No 116
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=79.54 E-value=1 Score=34.57 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=12.6
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccC
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLG 110 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLG 110 (222)
.+.+..+.|.|+| +++.+||.++||
T Consensus 3 ~F~~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 3 QFEFESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp SEEE-EEEEEE-T--T---S--H---
T ss_pred ceEEEEEEEeCCC-hhHHHHHHhccc
Confidence 5788899999999 889999999987
No 117
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=77.36 E-value=5.3 Score=29.71 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=26.2
Q ss_pred CceeEEEEEeCCHHHHHHHHHh-CCCeEEecC
Q 027489 180 RGFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (222)
Q Consensus 180 ~G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~P 210 (222)
.+++|+.+.|+|++++.+-+++ .|.++....
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~ 34 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGRD 34 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeeec
Confidence 3689999999999999999977 798876543
No 118
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=77.22 E-value=17 Score=26.42 Aligned_cols=29 Identities=7% Similarity=-0.017 Sum_probs=19.9
Q ss_pred eEEEEEEEEeCCH---HHHHHHHHhccCcEEEE
Q 027489 86 YFMQQTMFRIKDP---KVSLDFYSRVLGMSLLK 115 (222)
Q Consensus 86 ~~l~Hv~L~V~Dl---ekSi~FY~~vLGf~l~~ 115 (222)
-.+.|+++.|.|. ++..+..++ .|.++..
T Consensus 69 ~g~~hi~f~v~~~~~v~~~~~~l~~-~g~~~~~ 100 (125)
T cd07241 69 TGWAHLAFSVGSKEAVDELTERLRA-DGYLIIG 100 (125)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHH-CCCEEEe
Confidence 3578999999765 555555533 6888765
No 119
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=76.97 E-value=19 Score=26.18 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=25.7
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEec
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLD 118 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~ 118 (222)
.+.|+++.|.|++++.+-..+ .|.++.....
T Consensus 70 ~~~~i~~~v~did~~~~~l~~-~G~~~~~~~~ 100 (121)
T cd07233 70 GFGHLAFAVDDVYAACERLEE-MGVEVTKPPG 100 (121)
T ss_pred CeEEEEEEeCCHHHHHHHHHH-CCCEEeeCCc
Confidence 688999999999999888864 8999876543
No 120
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=76.88 E-value=4.8 Score=29.80 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=25.5
Q ss_pred ceeEEEEEeCCHHHHHHHHHhCCCeEEec
Q 027489 181 GFGHIGITVDDVYKACERFERLGVEFAKK 209 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~~GV~~v~~ 209 (222)
+++|+.+.|+|++++.+.+++.|.+....
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHHcCCEEEEe
Confidence 57899999999999999999999887544
No 121
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=76.83 E-value=8.2 Score=28.51 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=24.3
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEE
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLK 115 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~ 115 (222)
-.++|+++.|.|++++.+...+ .|.++..
T Consensus 71 ~g~~~i~~~v~di~~~~~~l~~-~G~~~~~ 99 (128)
T TIGR03081 71 GGIHHIAIEVDDIEAALETLKE-KGVRLID 99 (128)
T ss_pred CceEEEEEEcCCHHHHHHHHHH-CCCcccC
Confidence 4678999999999999998865 6888765
No 122
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=75.85 E-value=3.8 Score=30.05 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=24.4
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEec
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKK 209 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~ 209 (222)
|++|+++.|+|++++.+.+++ .|.+....
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~ 30 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKK 30 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeee
Confidence 468999999999999999987 58877543
No 123
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=75.03 E-value=12 Score=28.59 Aligned_cols=30 Identities=10% Similarity=-0.058 Sum_probs=25.2
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhc--cCcEEEE
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRV--LGMSLLK 115 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~v--LGf~l~~ 115 (222)
..++|+++.|.|+++..+.|.++ .|.++..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~ 92 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGW 92 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCcccc
Confidence 57899999999999999988877 6777653
No 124
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=74.71 E-value=24 Score=25.09 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=26.6
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEec
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLD 118 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~~ 118 (222)
.....|+.+.|.|+++..+...+ +|.++.....
T Consensus 54 ~~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~~~ 86 (108)
T PF12681_consen 54 PGGGFHLCFEVEDVDALYERLKE-LGAEIVTEPR 86 (108)
T ss_dssp SSSEEEEEEEESHHHHHHHHHHH-TTSEEEEEEE
T ss_pred CCceeEEEEEEcCHHHHHHHHHH-CCCeEeeCCE
Confidence 44678999999999999999865 7999765543
No 125
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=74.28 E-value=11 Score=29.46 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=26.0
Q ss_pred CceeEEEEEeCCHHHHHHHHHh-CCCeEEec
Q 027489 180 RGFGHIGITVDDVYKACERFER-LGVEFAKK 209 (222)
Q Consensus 180 ~G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~ 209 (222)
.++.|+++.|.|++++.+.+++ .|.++...
T Consensus 16 ~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~ 46 (150)
T TIGR00068 16 RRLLHTMLRVGDLDKSLDFYTEVLGMKLLRK 46 (150)
T ss_pred ceEEEEEEEecCHHHHHHHHHHhcCCEEEEE
Confidence 5889999999999999999986 69887543
No 126
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=72.70 E-value=58 Score=27.70 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=24.0
Q ss_pred CceEEEEEEEEeCCHHHHHHHHHhccCcEEE
Q 027489 84 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLL 114 (222)
Q Consensus 84 ~~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~ 114 (222)
..+.++|++|||.+.+.+-++-+..+.....
T Consensus 31 ~~~~~DHialRvn~~~~A~~~~~~l~~~G~l 61 (185)
T PF06185_consen 31 SQYEIDHIALRVNSNETAERWKQALLQCGEL 61 (185)
T ss_dssp TT-EEEEEEEE-S-HHHHHHHHHHHTTTEEE
T ss_pred cccCCcEEEEecCCHHHHHHHHHHHHHhChh
Confidence 3788999999999999999999998866544
No 127
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=72.70 E-value=7.7 Score=28.65 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=25.7
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEecC
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~P 210 (222)
++.|+.+.|+|++++.+-+++ .|.++....
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~ 34 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEED 34 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeccC
Confidence 678999999999999999988 798876543
No 128
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=72.30 E-value=8.2 Score=28.82 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=25.0
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEecC
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~P 210 (222)
|++|+.+.|.|++++.+.+++ .|.++....
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~ 31 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRW 31 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEec
Confidence 468999999999999999977 688876543
No 129
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=72.10 E-value=7.1 Score=29.20 Aligned_cols=30 Identities=20% Similarity=0.403 Sum_probs=25.5
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEecC
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~P 210 (222)
+++|+++.|.|++++.+.+++ +|.++...+
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~ 32 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRP 32 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCC
Confidence 468999999999999999977 699876553
No 130
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=70.84 E-value=8.9 Score=29.37 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=24.7
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEec
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKK 209 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~ 209 (222)
++.|+++.|+|++++++.+++ .|.+.+..
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEe
Confidence 789999999999999999977 68776543
No 131
>PRK11700 hypothetical protein; Provisional
Probab=70.76 E-value=31 Score=29.40 Aligned_cols=29 Identities=7% Similarity=0.021 Sum_probs=24.8
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEE
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSL 113 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l 113 (222)
.+..+|++|||.+.+.+-+|-+..+....
T Consensus 37 ~~~~DHialR~n~~~tAe~w~~~l~~~G~ 65 (187)
T PRK11700 37 QLEADHIALRCNQNETAERWRQGFLQCGE 65 (187)
T ss_pred cccCcEEEEeeCCHHHHHHHHHHHHHhch
Confidence 67789999999999999999988775543
No 132
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=70.34 E-value=9.6 Score=27.65 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=26.3
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEecC
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~P 210 (222)
.++|+.|.|+|++++.+-+++ .|.++....
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~ 32 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRD 32 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeec
Confidence 468999999999999999999 798887654
No 133
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=69.62 E-value=11 Score=27.76 Aligned_cols=25 Identities=36% Similarity=0.712 Sum_probs=22.5
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCeEE
Q 027489 183 GHIGITVDDVYKACERFERLGVEFA 207 (222)
Q Consensus 183 ~HIaf~VdDVdaa~~rL~~~GV~~v 207 (222)
.|+++.|+|++++.+-++++|.++.
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~ 26 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFP 26 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceec
Confidence 5899999999999999988998764
No 134
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=69.06 E-value=8.3 Score=27.23 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=24.4
Q ss_pred eeEEEEEeCCHHHHHHHHH-hCCCeEEecCC
Q 027489 182 FGHIGITVDDVYKACERFE-RLGVEFAKKPD 211 (222)
Q Consensus 182 ~~HIaf~VdDVdaa~~rL~-~~GV~~v~~P~ 211 (222)
++|+++.|+|++++.+.++ -.|.+....+.
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~ 31 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPP 31 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCC
Confidence 4699999999999999997 56888765543
No 135
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=68.15 E-value=11 Score=27.52 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=25.4
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEecC
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~P 210 (222)
+++|+.|.|.|++++.+.+++ .|.+.....
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~ 33 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAED 33 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEec
Confidence 789999999999999999987 688876443
No 136
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=68.00 E-value=29 Score=25.32 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=22.0
Q ss_pred EEEEEeCCHHHHHHHHHhccCcEEEEE
Q 027489 90 QTMFRIKDPKVSLDFYSRVLGMSLLKR 116 (222)
Q Consensus 90 Hv~L~V~DlekSi~FY~~vLGf~l~~~ 116 (222)
|+.+.|.|+++..+...+ .|.++...
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~~ 94 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVLP 94 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeeec
Confidence 899999999999999976 68876644
No 137
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.27 E-value=11 Score=24.78 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=23.2
Q ss_pred ceeEEEEEeCCHHHHHHHHHhCCCeE
Q 027489 181 GFGHIGITVDDVYKACERFERLGVEF 206 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~~GV~~ 206 (222)
+...+.|.+++.+.+.+.|+++|.++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 45688999999999999999999876
No 138
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=66.72 E-value=11 Score=26.04 Aligned_cols=28 Identities=36% Similarity=0.577 Sum_probs=24.6
Q ss_pred EEEEEeCCHHHHHHHHHh-CCCeEEecCC
Q 027489 184 HIGITVDDVYKACERFER-LGVEFAKKPD 211 (222)
Q Consensus 184 HIaf~VdDVdaa~~rL~~-~GV~~v~~P~ 211 (222)
|+.+.|.|+++.++-+.+ .|.+......
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~ 29 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNG 29 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeec
Confidence 789999999999999998 8988877664
No 139
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=66.54 E-value=13 Score=27.59 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=25.3
Q ss_pred ceeEEEEEeCCHHHHHHHHHhC-CCeEEec
Q 027489 181 GFGHIGITVDDVYKACERFERL-GVEFAKK 209 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~~-GV~~v~~ 209 (222)
+++|+.+.|+|++++.+-+++. |.++...
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHHhCcCCEEEee
Confidence 7899999999999999999884 9887654
No 140
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=64.85 E-value=36 Score=24.24 Aligned_cols=32 Identities=6% Similarity=-0.030 Sum_probs=26.3
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEEe
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRL 117 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~ 117 (222)
.-...|+.+.|.|+++..+--.+ .|.++....
T Consensus 65 ~~~~~~~~~~v~di~~~~~~l~~-~g~~~~~~~ 96 (119)
T cd07263 65 PGGTPGLVLATDDIDATYEELKA-RGVEFSEEP 96 (119)
T ss_pred CCCceEEEEEehHHHHHHHHHHh-CCCEEeecc
Confidence 34677999999999999999875 898887654
No 141
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=64.75 E-value=16 Score=26.90 Aligned_cols=30 Identities=20% Similarity=0.465 Sum_probs=25.5
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEecC
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~P 210 (222)
.++|+.+.|+|++++.+.+++ .|.++....
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~ 32 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERT 32 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcC
Confidence 468999999999999999987 688887654
No 142
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=63.20 E-value=38 Score=26.72 Aligned_cols=31 Identities=10% Similarity=-0.099 Sum_probs=24.1
Q ss_pred eEEEEEEEEeCCHHHHHHHHHh--ccCcEEEEE
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSR--VLGMSLLKR 116 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~--vLGf~l~~~ 116 (222)
-.++|+++.|.|+++....|.. ..|+++...
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~ 98 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWG 98 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeec
Confidence 4689999999999999866554 368877643
No 143
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=63.11 E-value=52 Score=23.74 Aligned_cols=28 Identities=11% Similarity=0.187 Sum_probs=22.7
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEE
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKR 116 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~ 116 (222)
..|+.+.|.|++++.+-.++ .|.++...
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~ 85 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYG 85 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecC
Confidence 35899999999999988855 78887653
No 144
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=61.19 E-value=39 Score=27.02 Aligned_cols=28 Identities=7% Similarity=-0.226 Sum_probs=23.6
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEE
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSL 113 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l 113 (222)
...+.|+++.|.|+++..+..++ .|.+.
T Consensus 91 ~~g~~Hla~~v~dida~~~~l~~-~G~~~ 118 (162)
T TIGR03645 91 KTGVFHFCVQDPDVEGLAERIVA-AGGKK 118 (162)
T ss_pred cccceEEEEEcCCHHHHHHHHHH-cCCcc
Confidence 46799999999999999999976 57654
No 145
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=59.24 E-value=48 Score=26.18 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=23.2
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhc--cCcEEEEE
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRV--LGMSLLKR 116 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~v--LGf~l~~~ 116 (222)
-.++|+++.|.|++...+++.++ .|.++...
T Consensus 72 ~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~ 104 (154)
T cd07237 72 KRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMT 104 (154)
T ss_pred ceeEEEEEEcCCHHHHHHHHHHHHHcCCceecc
Confidence 46999999999988766666544 68887643
No 146
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=57.98 E-value=20 Score=26.46 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=24.2
Q ss_pred eeEEEEEeCCHHHHHHHHHh----CCCeEEecC
Q 027489 182 FGHIGITVDDVYKACERFER----LGVEFAKKP 210 (222)
Q Consensus 182 ~~HIaf~VdDVdaa~~rL~~----~GV~~v~~P 210 (222)
+.|+.+.|.|++++.+-+++ +|.+....+
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~ 33 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED 33 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec
Confidence 36999999999999999987 598876554
No 147
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=57.69 E-value=54 Score=25.68 Aligned_cols=31 Identities=10% Similarity=0.072 Sum_probs=23.3
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhc--cCcEEEE
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRV--LGMSLLK 115 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~v--LGf~l~~ 115 (222)
...++|+++.|.|.+...++|..+ .|.++..
T Consensus 54 ~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~ 86 (141)
T cd07258 54 SSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVF 86 (141)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCcEEe
Confidence 468999999999987666666554 5777654
No 148
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=57.60 E-value=69 Score=23.05 Aligned_cols=31 Identities=6% Similarity=-0.073 Sum_probs=23.2
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhccCcEEEEEe
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRL 117 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~ 117 (222)
....|+.+.|.|+++..+-..+ .|.++....
T Consensus 67 ~~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~~ 97 (122)
T cd07246 67 GTPVSLHLYVEDVDATFARAVA-AGATSVMPP 97 (122)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-CCCeEecCc
Confidence 3456999999999988776654 588876543
No 149
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=57.18 E-value=16 Score=33.20 Aligned_cols=43 Identities=19% Similarity=0.256 Sum_probs=32.5
Q ss_pred EEEEEE--eC---CHHHHHHHHHhccCcEEEEEecCCCCcEEEEEEecC
Q 027489 89 QQTMFR--IK---DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYE 132 (222)
Q Consensus 89 ~Hv~L~--V~---DlekSi~FY~~vLGf~l~~~~~~p~~~~~l~flg~~ 132 (222)
+|++|+ .. .++.-.+++ ..|||+....++++..+..-.++...
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F-~~lGy~~~G~Y~f~~kkl~a~~f~p~ 83 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIF-AALGYEPVGYYDFPAKKLHATWFRPP 83 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHH-HTTTEEEEEEEEEGGGTEEEEEEEET
T ss_pred eeeEEEecCCCchhHHHHHHHH-HHcCCEEcceecccccCceEEEecCC
Confidence 899999 33 578888888 57999999999988766544444443
No 150
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=56.53 E-value=58 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=21.7
Q ss_pred EEEEEEeCCHHHHHHHHHhccCcEEEEE
Q 027489 89 QQTMFRIKDPKVSLDFYSRVLGMSLLKR 116 (222)
Q Consensus 89 ~Hv~L~V~DlekSi~FY~~vLGf~l~~~ 116 (222)
.|+.+.|+|++++.+.-.+ .|.++...
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~~ 99 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVSE 99 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEeccC
Confidence 3889999999999888864 68887653
No 151
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=56.47 E-value=72 Score=22.90 Aligned_cols=30 Identities=13% Similarity=-0.003 Sum_probs=23.9
Q ss_pred EEEEEEEEeCCHHHHHHHHHhccCcEEEEEe
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRL 117 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~~ 117 (222)
...|+.+.|+|+++..+-..+ .|.++....
T Consensus 61 ~~~~~~f~v~di~~~~~~l~~-~g~~~~~~~ 90 (114)
T cd07247 61 PGWLVYFAVDDVDAAAARVEA-AGGKVLVPP 90 (114)
T ss_pred CeEEEEEEeCCHHHHHHHHHH-CCCEEEeCC
Confidence 456889999999999888865 698877543
No 152
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=56.20 E-value=59 Score=25.33 Aligned_cols=30 Identities=10% Similarity=-0.087 Sum_probs=22.0
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhc--cCcEEEE
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRV--LGMSLLK 115 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~v--LGf~l~~ 115 (222)
-.++|+++.|.|+++..+-+..+ .|.++..
T Consensus 66 ~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~ 97 (143)
T cd07243 66 GKLHHFSFFLESWEDVLKAGDIISMNDVSIDI 97 (143)
T ss_pred CCceEEEEEcCCHHHHHHHHHHHHHcCCceEE
Confidence 35899999999999866555443 6877653
No 153
>PRK06724 hypothetical protein; Provisional
Probab=55.88 E-value=70 Score=24.63 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=19.5
Q ss_pred EEEEEEEEeCCHHHHHHHHHhc--cCcEEEE
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRV--LGMSLLK 115 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~v--LGf~l~~ 115 (222)
...|+++.|.+.+.--++|+.. .|.++..
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~ 93 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSSTKIKIIR 93 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHHCCCEEec
Confidence 4679999996555555555544 6888653
No 154
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=54.96 E-value=26 Score=27.51 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=25.4
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEecC
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKKP 210 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~P 210 (222)
.+.|+++.|.|+++..+-.++ +|.+++.+.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeee
Confidence 467999999999999999965 799986644
No 155
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=53.18 E-value=70 Score=22.62 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=20.1
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcE
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMS 112 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~ 112 (222)
-.|+.+.|.|+++..+-.++ .|.+
T Consensus 59 ~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 59 GGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred cEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 34789999999999988865 7887
No 156
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=52.01 E-value=92 Score=22.79 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=21.1
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEE
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLK 115 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~ 115 (222)
-.|+.+.|.|+++..+--++.=|.+...
T Consensus 65 ~~~l~~~v~dvd~~~~~l~~~g~~~~~~ 92 (120)
T cd09011 65 NFELYFEEEDFDAFLDKLKRYDNIEYVH 92 (120)
T ss_pred ceEEEEEehhhHHHHHHHHhcCCcEEec
Confidence 3599999999999999997633345543
No 157
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=50.76 E-value=60 Score=25.90 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=19.9
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhc--cCcEEE
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRV--LGMSLL 114 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~v--LGf~l~ 114 (222)
...++|+++.|.|.+..-++|.++ .|+++.
T Consensus 63 ~~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~ 94 (157)
T cd08347 63 AGTVHHVAFRVPDDEELEAWKERLEALGLPVS 94 (157)
T ss_pred CCceEEEEEECCCHHHHHHHHHHHHHCCCCcc
Confidence 356899999999955444455444 477643
No 158
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=50.74 E-value=66 Score=23.99 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=23.9
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhcc--CcEEEEE
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVL--GMSLLKR 116 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vL--Gf~l~~~ 116 (222)
..++|+++.|.|.+.-.+.|.++. |.++...
T Consensus 64 ~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~ 96 (134)
T cd08348 64 AGLNHIAFEVDSLDDLRDLYERLRAAGITPVWP 96 (134)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHCCCCcccc
Confidence 467899999999998877877654 7776543
No 159
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=49.98 E-value=26 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=24.7
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEec
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAKK 209 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~~ 209 (222)
.++|+++.|.|++++++.+++ +|.+....
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~ 35 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAER 35 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccC
Confidence 568999999999999999988 59887544
No 160
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=49.76 E-value=28 Score=25.89 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=23.9
Q ss_pred ceeEEEEEeCCHHHHHHHHHh-CCCeEEe
Q 027489 181 GFGHIGITVDDVYKACERFER-LGVEFAK 208 (222)
Q Consensus 181 G~~HIaf~VdDVdaa~~rL~~-~GV~~v~ 208 (222)
.+.|+++.|.|++++.+.+++ .|.++..
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~ 32 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAK 32 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeee
Confidence 568999999999999999976 5887765
No 161
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.52 E-value=41 Score=22.57 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=21.5
Q ss_pred ceeEEEEEeC--CHHHHHHHHHhCCCeEEe
Q 027489 181 GFGHIGITVD--DVYKACERFERLGVEFAK 208 (222)
Q Consensus 181 G~~HIaf~Vd--DVdaa~~rL~~~GV~~v~ 208 (222)
+...+.|.++ |.+.+.+.|+++|+++.-
T Consensus 41 ~~~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 41 DNKILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred CeEEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 3455666664 888999999999998753
No 162
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=47.92 E-value=27 Score=25.10 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=21.8
Q ss_pred EEEEEeCCHHHHHHHHHh-CCCeEEecC
Q 027489 184 HIGITVDDVYKACERFER-LGVEFAKKP 210 (222)
Q Consensus 184 HIaf~VdDVdaa~~rL~~-~GV~~v~~P 210 (222)
|+++.|+|++++.+-+++ .|.+.....
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~ 28 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSS 28 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeecc
Confidence 789999999999988888 577765544
No 163
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=46.84 E-value=1.6e+02 Score=24.17 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=22.8
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEE
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLL 114 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~ 114 (222)
.+|++|||.+.+.+-+|.+..+....+
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~l 28 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGEL 28 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchh
Confidence 589999999999999999888755533
No 164
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=45.01 E-value=1.3e+02 Score=22.51 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=22.9
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhc--cCcEEEEE
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRV--LGMSLLKR 116 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~v--LGf~l~~~ 116 (222)
...+.|+++.|.|.+...+.|+++ .|.++...
T Consensus 57 ~~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i~~~ 90 (131)
T cd08343 57 RPGLHHVAFEVESLDDILRAADRLAANGIQIEFG 90 (131)
T ss_pred CCCeeEEEEEcCCHHHHHHHHHHHHHcCCeeEEC
Confidence 346889999999998655566543 48877653
No 165
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=44.85 E-value=84 Score=23.16 Aligned_cols=28 Identities=4% Similarity=-0.012 Sum_probs=21.2
Q ss_pred EEEEEEEeCCHHHHHHHHHhc--cCcEEEE
Q 027489 88 MQQTMFRIKDPKVSLDFYSRV--LGMSLLK 115 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~v--LGf~l~~ 115 (222)
..|+++.|.|.+..-++|.++ .|.++..
T Consensus 69 ~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~ 98 (124)
T cd09012 69 EVLISLSADSREEVDELVEKALAAGGKEFR 98 (124)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHCCCcccC
Confidence 469999999888777788765 4666654
No 166
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=44.56 E-value=1.2e+02 Score=22.12 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=21.6
Q ss_pred ceEEEEEEEEeCC---HHHHHHHHHhccCcEEEEEe
Q 027489 85 GYFMQQTMFRIKD---PKVSLDFYSRVLGMSLLKRL 117 (222)
Q Consensus 85 ~~~l~Hv~L~V~D---lekSi~FY~~vLGf~l~~~~ 117 (222)
...++|+++.|.| ++++.+-.++ .|.++....
T Consensus 66 ~~g~~hia~~v~~~~d~~~~~~~l~~-~g~~~~~~~ 100 (128)
T cd07242 66 NPGLHHLAFRAPSREAVDELYARLAK-RGAEILYAP 100 (128)
T ss_pred CcCeeEEEEEcCCHHHHHHHHHHHHH-cCCeEecCC
Confidence 4457899999986 5555555543 588877643
No 167
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=42.57 E-value=96 Score=22.23 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=19.0
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEE
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKR 116 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~ 116 (222)
...+.|....++|+++..+-..+ .|.++...
T Consensus 65 ~~~~~~~~~~~~d~~~~~~~l~~-~G~~~~~~ 95 (121)
T cd07251 65 GITLAHNVRSEEEVDAVLARAAA-AGATIVKP 95 (121)
T ss_pred ceEEEEEcCCHHHHHHHHHHHHh-CCCEEecC
Confidence 34455555555677777776654 68887643
No 168
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=42.56 E-value=24 Score=28.25 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=22.4
Q ss_pred EEEEEeCCHHHHHHHHHhCCCeEEe
Q 027489 184 HIGITVDDVYKACERFERLGVEFAK 208 (222)
Q Consensus 184 HIaf~VdDVdaa~~rL~~~GV~~v~ 208 (222)
-+-+.|+|+|++.+-|+++|+.++.
T Consensus 111 lli~r~ed~d~~~~aLed~gi~~~~ 135 (142)
T COG4747 111 LLIVRVEDIDRAIKALEDAGIKLIG 135 (142)
T ss_pred EEEEEhhHHHHHHHHHHHcCCeecC
Confidence 4678999999999999999999864
No 169
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=42.23 E-value=39 Score=27.33 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=23.2
Q ss_pred CceEEEEEEEEeCCHHHHHHHHHhcc
Q 027489 84 NGYFMQQTMFRIKDPKVSLDFYSRVL 109 (222)
Q Consensus 84 ~~~~l~Hv~L~V~DlekSi~FY~~vL 109 (222)
....|.++.+.++|++++.++|.++|
T Consensus 150 g~~~i~~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 150 GALGITRVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp TTEEEEEEEEEETTHHHHHHHHHHH-
T ss_pred ccceEEEEEEEeCCHHHHHHHHHhhC
Confidence 47799999999999999999999875
No 170
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=40.61 E-value=1.4e+02 Score=21.64 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=22.0
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhcc--CcEEEE
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVL--GMSLLK 115 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vL--Gf~l~~ 115 (222)
-.+.|+++.|.|.+...++|.++- |.++..
T Consensus 57 ~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~ 88 (120)
T cd07254 57 GGLNHLGVQVDSAEEVAEAKARAEAAGLPTFK 88 (120)
T ss_pred CCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEc
Confidence 467899999999766666666554 777654
No 171
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=40.15 E-value=96 Score=24.82 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=20.4
Q ss_pred EEEEEEEEeCCHHHHHHHHHhc--cCcEEE
Q 027489 87 FMQQTMFRIKDPKVSLDFYSRV--LGMSLL 114 (222)
Q Consensus 87 ~l~Hv~L~V~DlekSi~FY~~v--LGf~l~ 114 (222)
.++|+++.|.|.+...++|.++ .|.++.
T Consensus 69 ~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~ 98 (166)
T cd09014 69 RLHHLAYALDTREDVLRAADIFLENGIFIE 98 (166)
T ss_pred CceEEEEECCCHHHHHHHHHHHHHcCCccc
Confidence 5799999999888666665544 466654
No 172
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.37 E-value=58 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=23.2
Q ss_pred ceeEEEEEeCC----HHHHHHHHHhCCCeEEe
Q 027489 181 GFGHIGITVDD----VYKACERFERLGVEFAK 208 (222)
Q Consensus 181 G~~HIaf~VdD----Vdaa~~rL~~~GV~~v~ 208 (222)
+.-.+.+.|+| ++++.+.|+++|+++..
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVD 71 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEE
Confidence 33567789888 99999999999999864
No 173
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=36.72 E-value=48 Score=27.53 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=26.6
Q ss_pred ceEEEEEEEEeCCHHHHHHHHHhccCcEEEEE
Q 027489 85 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKR 116 (222)
Q Consensus 85 ~~~l~Hv~L~V~DlekSi~FY~~vLGf~l~~~ 116 (222)
+-.++|+++.|.|++++++-.++ -|.+++..
T Consensus 81 G~Gv~HIAf~vdDI~~~~~~L~~-~Gv~~l~~ 111 (191)
T cd07250 81 GAGVQHIALATDDIFATVAALRA-RGVEFLPI 111 (191)
T ss_pred CCceeEEEEECCCHHHHHHHHHH-cCCeeccC
Confidence 46899999999999999999976 68887653
No 174
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=34.04 E-value=1.4e+02 Score=23.22 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=23.0
Q ss_pred eEEEEEEEEeCCHHHHHHHHHhcc--CcEEEE
Q 027489 86 YFMQQTMFRIKDPKVSLDFYSRVL--GMSLLK 115 (222)
Q Consensus 86 ~~l~Hv~L~V~DlekSi~FY~~vL--Gf~l~~ 115 (222)
-.++|+++.|.|++...+++.++- |.++..
T Consensus 58 ~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~ 89 (144)
T cd07239 58 PSLNHVAFEMPSIDEVMRGIGRMIDKGIDILW 89 (144)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHcCCceee
Confidence 368899999999999987776654 666543
No 175
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=33.48 E-value=1.8e+02 Score=22.06 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=22.3
Q ss_pred eEEEEEEEEeC--CHHHHHHHHHhccCcEEEE
Q 027489 86 YFMQQTMFRIK--DPKVSLDFYSRVLGMSLLK 115 (222)
Q Consensus 86 ~~l~Hv~L~V~--DlekSi~FY~~vLGf~l~~ 115 (222)
..+.|+++.|. |+++..+...+ .|.++..
T Consensus 62 ~~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~ 92 (139)
T PRK04101 62 QSYTHIAFSIEEEDFDHWYQRLKE-NDVNILP 92 (139)
T ss_pred CCeeEEEEEecHHHHHHHHHHHHH-CCceEcC
Confidence 45789999987 88888888765 6887653
No 176
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=29.83 E-value=52 Score=26.22 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=22.3
Q ss_pred eEEEEEeCCHHHHHHHHHhCCCeEE
Q 027489 183 GHIGITVDDVYKACERFERLGVEFA 207 (222)
Q Consensus 183 ~HIaf~VdDVdaa~~rL~~~GV~~v 207 (222)
.|+-+.-+|++++++.|+++|.++.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 5888888999999999999998864
No 177
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.80 E-value=1.3e+02 Score=21.69 Aligned_cols=28 Identities=32% Similarity=0.368 Sum_probs=23.2
Q ss_pred eEEEEEeCCHHHHHHHHHh-CCCeEEecC
Q 027489 183 GHIGITVDDVYKACERFER-LGVEFAKKP 210 (222)
Q Consensus 183 ~HIaf~VdDVdaa~~rL~~-~GV~~v~~P 210 (222)
.|+++.|.|++++.+.+++ .|.++...+
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~ 30 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKE 30 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecC
Confidence 5889999999999999975 688877643
No 178
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=27.13 E-value=2.5e+02 Score=20.36 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=21.2
Q ss_pred EEEEEEEeCCHHHHHHHHHhccCcEEEEE
Q 027489 88 MQQTMFRIKDPKVSLDFYSRVLGMSLLKR 116 (222)
Q Consensus 88 l~Hv~L~V~DlekSi~FY~~vLGf~l~~~ 116 (222)
-.|+.+.|.|++++.+-..+ .|.++...
T Consensus 69 ~~~~~~~v~d~d~~~~~l~~-~G~~v~~~ 96 (122)
T cd08355 69 TQGVYVVVDDVDAHYERARA-AGAEILRE 96 (122)
T ss_pred eEEEEEEECCHHHHHHHHHH-CCCEEeeC
Confidence 35899999999888776654 58887754
No 179
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=26.78 E-value=1.2e+02 Score=20.19 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEEeCCHHHHHHHHHhCCCeEE
Q 027489 184 HIGITVDDVYKACERFERLGVEFA 207 (222)
Q Consensus 184 HIaf~VdDVdaa~~rL~~~GV~~v 207 (222)
.+-+.++|.+++.+.|+++|.++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 455566898899999999999864
No 180
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.46 E-value=45 Score=29.34 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=17.5
Q ss_pred CHHHHHHHHHhccCcEEEEE
Q 027489 97 DPKVSLDFYSRVLGMSLLKR 116 (222)
Q Consensus 97 DlekSi~FY~~vLGf~l~~~ 116 (222)
|+.+++.||.+.||+++...
T Consensus 146 ~~~e~a~wy~dyLGleie~~ 165 (246)
T KOG4657|consen 146 DIHEAASWYNDYLGLEIEAG 165 (246)
T ss_pred ccHHHHHHHHHhcCceeeec
Confidence 67888999999999998764
No 181
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=26.10 E-value=31 Score=20.54 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=13.3
Q ss_pred eCCHHHHHHHHHhccCc
Q 027489 95 IKDPKVSLDFYSRVLGM 111 (222)
Q Consensus 95 V~DlekSi~FY~~vLGf 111 (222)
..|.++++++|++.|.+
T Consensus 12 ~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp CT-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 46899999999997754
No 182
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.97 E-value=1.1e+02 Score=20.74 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=21.0
Q ss_pred ceeEEEEEeCC---HHHHHHHHHhCCCeEE
Q 027489 181 GFGHIGITVDD---VYKACERFERLGVEFA 207 (222)
Q Consensus 181 G~~HIaf~VdD---Vdaa~~rL~~~GV~~v 207 (222)
+.-++.+.+.| ++++.+.|+++|.++.
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 34567888865 7888999999998763
No 183
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=24.56 E-value=2.1e+02 Score=19.41 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=21.8
Q ss_pred EEEEeCC----HHHHHHHHHhCCCeEE---ecCCCCCc
Q 027489 185 IGITVDD----VYKACERFERLGVEFA---KKPDGGKA 215 (222)
Q Consensus 185 Iaf~VdD----Vdaa~~rL~~~GV~~v---~~P~dG~m 215 (222)
+.|.++| +..+.+-++++|+.+. ..|..+..
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~ 39 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGL 39 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCC
Confidence 4566654 7888999999999875 45655533
No 184
>PF15067 FAM124: FAM124 family
Probab=23.01 E-value=5.3e+02 Score=22.80 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=24.7
Q ss_pred EEEEEEEEeC--CHHHHHHHHHhccCcEEEEE
Q 027489 87 FMQQTMFRIK--DPKVSLDFYSRVLGMSLLKR 116 (222)
Q Consensus 87 ~l~Hv~L~V~--DlekSi~FY~~vLGf~l~~~ 116 (222)
.+--+.|.|+ |.+.+++||+-+|+-+....
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~ 159 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQ 159 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCccee
Confidence 4455678888 99999999999999887654
No 185
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.78 E-value=1.7e+02 Score=18.77 Aligned_cols=25 Identities=4% Similarity=0.131 Sum_probs=18.4
Q ss_pred eEEEEEeCC---HHHHHHHHHhCCCeEE
Q 027489 183 GHIGITVDD---VYKACERFERLGVEFA 207 (222)
Q Consensus 183 ~HIaf~VdD---Vdaa~~rL~~~GV~~v 207 (222)
.++.+.+.| ++.+.+.|++.|.++.
T Consensus 45 ~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 45 VELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred EEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 345556655 4588999999999875
No 186
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.47 E-value=94 Score=20.69 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=17.9
Q ss_pred eEEEEEe---CCHHHHHHHHHhCCCeE
Q 027489 183 GHIGITV---DDVYKACERFERLGVEF 206 (222)
Q Consensus 183 ~HIaf~V---dDVdaa~~rL~~~GV~~ 206 (222)
+++.|.+ +|.+++.+.|+++|+++
T Consensus 43 ~~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 43 GILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 3455556 46889999999999864
Done!