BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027490
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQI 119
NPAVT+ A FP K++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEV 84
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA---------YDEHRVSKLGASVAGGLIVTVMIYA 91
+ +V+ I+A LL + G A Y EH S G S+ L+V +++ A
Sbjct: 89 IAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH--SPGGYSMLSALVVELVLSA 146
Query: 92 VGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPART 151
G + H T FA P IA+G A+ + +++ PV+ S+NPAR+
Sbjct: 147 -GFLLVIH---GATDKFAPAGFAP---------IAIGLALTLIGLISIPVTNFSVNPARS 193
Query: 152 VGPAIASSFYKGIW 165
AI ++G W
Sbjct: 194 TAVAI----FQGGW 203
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQI 119
NPAVT+ A FP K++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEV 84
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA---------YDEHRVSKLGASVAGGLIVTVMIYA 91
+ +V+ I+A LL + G A Y EH S G S+ L+V +++ A
Sbjct: 89 IAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH--SPGGYSMLSALVVELVLSA 146
Query: 92 VGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPART 151
G + H T FA P IA+G A+ + +++ PV+ S+NPAR+
Sbjct: 147 -GFLLVIH---GATDKFAPAGFAP---------IAIGLALTLIGLISIPVTNFSVNPARS 193
Query: 152 VGPAIASSFYKGIW 165
AI ++G W
Sbjct: 194 TAVAI----FQGGW 203
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 2 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 61
Query: 100 MNPAVTLAFAAVRHFPWKQI 119
NPAVT+ A FP K++
Sbjct: 62 FNPAVTIGLWAGGRFPAKEV 81
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA---------YDEHRVSKLGASVAGGLIVTVMIYA 91
+ +V+ I+A LL + G A Y EH S G S+ L+V +++ A
Sbjct: 86 IAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH--SPGGYSMLSALVVELVLSA 143
Query: 92 VGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPART 151
G + H T FA P IA+G A+ + +++ PV+ S+NPAR+
Sbjct: 144 -GFLLVIH---GATDKFAPAGFAP---------IAIGLALTLIHLISIPVTNTSVNPARS 190
Query: 152 VGPAIASSFYKGIW 165
AI ++G W
Sbjct: 191 TAVAI----FQGGW 200
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF CGSA L+A + + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQI 119
NPAVT+ A FP K++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEV 84
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA---------YDEHRVSKLGASVAGGLIVTVMIYA 91
+ +V+ I+A LL + G A Y EH S G S+ L+V +++ A
Sbjct: 89 IAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH--SPGGYSMLSALVVELVLSA 146
Query: 92 VGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPART 151
G + H T FA P IA+G A+ + +++ PV+ S+NPAR+
Sbjct: 147 -GFLLVIH---GATDKFAPAGFAP---------IAIGLALTLIHLISIPVTNTSVNPARS 193
Query: 152 VGPAIASSFYKGIW 165
AI ++G W
Sbjct: 194 TAVAI----FQGGW 203
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF GSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQI 119
NPAVT+ A FP K++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEV 84
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA---------YDEHRVSKLGASVAGGLIVTVMIYA 91
+ +V+ I+A LL + G A Y EH S G S+ L+V +++ A
Sbjct: 89 IAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH--SPGGYSMLSALVVELVLSA 146
Query: 92 VGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPART 151
G + H T FA P IA+G A+ + +++ PV+ S+NPAR+
Sbjct: 147 -GFLLVIH---GATDKFAPAGFAP---------IAIGLALTLIHLISIPVTNCSVNPARS 193
Query: 152 VGPAIASSFYKGIW 165
AI ++G W
Sbjct: 194 TAVAI----FQGGW 203
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF GSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQI 119
NPAVT+ A FP K++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEV 84
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 28/134 (20%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA---------YDEHRVSKLGASVAGGLIVTVMIYA 91
+ +V+ I+A LL + G A Y EH S G S+ L+V +++ A
Sbjct: 89 IAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH--SPGGYSMLSALVVELVLSA 146
Query: 92 VGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPART 151
G + H T FA P IA+G A + +++ PV+ S+NPAR+
Sbjct: 147 -GFLLVIH---GATDKFAPAGFAP---------IAIGLACTLIHLISIPVTNTSVNPARS 193
Query: 152 VGPAIASSFYKGIW 165
AI ++G W
Sbjct: 194 TAVAI----FQGGW 203
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
RK+ AE T+ LVF GSA L+A + E + G ++A GL V M +AVGHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 100 MNPAVTLAFAAVRHFPWKQI 119
NPAVT+ A FP K++
Sbjct: 65 FNPAVTIGLWAGGRFPAKEV 84
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 28/134 (20%)
Query: 41 LRKVIAEIIATYLLVFVTCGSAALSA---------YDEHRVSKLGASVAGGLIVTVMIYA 91
+ +V+ I+A LL + G A Y EH S G S+ L+V +++ A
Sbjct: 89 IAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH--SPGGYSMLSALVVELVLSA 146
Query: 92 VGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPART 151
G + H T FA P IA+G A+ + +++ PV+ S+NPAR+
Sbjct: 147 -GFLLVIH---GATDKFAPAGFAP---------IAIGLALTLIHLISIPVTNCSVNPARS 193
Query: 152 VGPAIASSFYKGIW 165
AI ++G W
Sbjct: 194 TAVAI----FQGGW 203
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 42 RKVIAEIIATYLLVFVTCGSAALSA-YDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHM 100
RK++AE T+ LVF CGSA +A + E + G ++A GL V M YAVG ISG H
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHF 90
Query: 101 NPAVTLAFAAVRHFP 115
NPAV++ FP
Sbjct: 91 NPAVSVGLTVAGRFP 105
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 125 IAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFY--KGIWVYLVGPVTGTFMGAWSY 182
IA+G A+ + +++ PV+ S+NPAR+ G A+ + + +W++ + P+ G GA +
Sbjct: 190 IAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIW 249
Query: 183 NMIRETD 189
+ E D
Sbjct: 250 KLFGEKD 256
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 33/160 (20%)
Query: 42 RKVIAEIIATYLLVFVTCGSAALS-----------------AYDEHRVSKLGASVAGGLI 84
++ IAE I T++LVF GSAA++ + +A G
Sbjct: 6 KRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFA 65
Query: 85 VTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQ-----IGELAGIAVGSAVCITSVLAG 139
+ IYA+G+ISG H+NPAVT+ +V+ FP ++ I +L G A GS + + G
Sbjct: 66 IAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIG 125
Query: 140 PVSGGSMNPARTVGPAIASSFYKGI--WVYLVGPVTGTFM 177
A TVG A++ + GI W ++ V GTF+
Sbjct: 126 ---------AATVGGLGATAPFPGISYWQAMLAEVVGTFL 156
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 26/170 (15%)
Query: 31 VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIY 90
+W+ PG R+V+ IIA L AA ++ + + +GA+ GGL T
Sbjct: 89 LWSVKKFPG--REVVPYIIAQLL-------GAAFGSFIFLQCAGIGAATVGGLGATAPFP 139
Query: 91 AVGH-------ISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSG 143
+ + + G + + A P AGI +G V G +SG
Sbjct: 140 GISYWQAMLAEVVGTFLLMITIMGIAVDERAP----KGFAGIIIGLTVAGIITTLGNISG 195
Query: 144 GSMNPARTVGPAIASSFYKG--IW----VYLVGPVTGTFMGAWSYNMIRE 187
S+NPART GP + + G +W +Y++GP+ G + A +Y +
Sbjct: 196 SSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 16/121 (13%)
Query: 33 NEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAY----DEHRVS-KLGASVAGGLIVTV 87
+E F R V+AE +AT L VF++ GSA Y ++ V + S+A GL +
Sbjct: 3 SEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIAT 62
Query: 88 MIYAVGHISGAHMNPAVTLA---------FAAVRHFPWKQIGELAGIAVGSAVCITSVLA 138
+ +VGHISGAH+NPAVTL F A+ + + +G + A+ S ITS L
Sbjct: 63 LAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSG--ITSSLT 120
Query: 139 G 139
G
Sbjct: 121 G 121
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 117 KQIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTF 176
+ +G A +A+G +V + +LA +G +NPAR+ G A+ + + W++ VGP G
Sbjct: 162 RDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGA 221
Query: 177 MGAWSYNMI---RETD 189
+ Y+ I R +D
Sbjct: 222 LAVLIYDFILAPRSSD 237
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 33 NEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGA-------SVAGGLIV 85
+E F R V+AE +A L +F++ GSA Y GA S+A GL +
Sbjct: 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSI 62
Query: 86 TVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGG 144
+ +VGHISGAH+NPAVTL QI L I A C+ +++A + G
Sbjct: 63 ATLAQSVGHISGAHLNPAVTLGL-----LLSCQISVLRAIMYIIAQCVGAIVATAILSG 116
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 117 KQIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTF 176
+ +G +A+G +V + +LA +G +NPAR+ G ++ + ++ W++ VGP G
Sbjct: 164 RDLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAA 223
Query: 177 MGAWSYNMI---RETD 189
+ Y+ I R +D
Sbjct: 224 LAVLIYDFILAPRSSD 239
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE AT VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 9 FWRAIFAEFFATLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 66
Query: 100 MNPAVTLAF---------AAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPAR 150
+NPAVT AF A+ + + +G +AG AV +V +V G ++ +++P
Sbjct: 67 VNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHPGV 125
Query: 151 TVGPA 155
+VG A
Sbjct: 126 SVGQA 130
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 118 QIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFM 177
++G +A +AVG ++ + + +G MNPAR+ PAI + + WVY VGPV G +
Sbjct: 156 RLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGL 214
Query: 178 GAWSYNMI 185
G+ Y+ +
Sbjct: 215 GSLLYDFL 222
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE AT VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 5 FWRAIFAEFFATLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 62
Query: 100 MNPAVTLAFA---------AVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPAR 150
+NPAVT AF A+ + + +G +AG AV +V +V G ++ +++P
Sbjct: 63 VNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHPGV 121
Query: 151 TVGPA 155
+VG A
Sbjct: 122 SVGQA 126
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 118 QIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFM 177
++G +A +AVG ++ + + +G MNPAR+ PAI + + WVY VGPV G +
Sbjct: 152 RLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGL 210
Query: 178 GAWSYNMI 185
G+ Y+ +
Sbjct: 211 GSLLYDFL 218
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE AT VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 3 FWRAIFAEFFATLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 60
Query: 100 MNPAVTLAFA---------AVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPAR 150
+NPAVT AF A+ + + +G +AG AV +V +V G ++ +++P
Sbjct: 61 VNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHPGV 119
Query: 151 TVGPA 155
+VG A
Sbjct: 120 SVGQA 124
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 118 QIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFM 177
++G +A +AVG ++ + + +G MNPAR+ PAI + + WVY VGPV G +
Sbjct: 150 RLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGL 208
Query: 178 GAWSYNMI 185
G+ Y+ +
Sbjct: 209 GSLLYDFL 216
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
F R + AE A+ VF G++ A V L ++A GL + ++ AVGHISGAH
Sbjct: 9 FWRAICAEFFASLFYVFFGLGASLRWAPGPLHV--LQVALAFGLALATLVQAVGHISGAH 66
Query: 100 MNPAVTLAF---------AAVRHFPWKQIGELAGIAVGSAVCITSVLAGPVSGGSMNPAR 150
+NPAVT AF A+ + + +G +AG AV +V +V G ++ +++P
Sbjct: 67 VNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAV-RGNLALNTLHPGV 125
Query: 151 TVGPA 155
+VG A
Sbjct: 126 SVGQA 130
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 118 QIGELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFM 177
++G +A +AVG ++ + + +G MNPAR+ PAI + + WVY VGPV G +
Sbjct: 156 RLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGL 214
Query: 178 GAWSYNMI 185
G+ Y+ +
Sbjct: 215 GSLLYDFL 222
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 31/145 (21%)
Query: 42 RKVIAEIIATYLLVFVTCGSAALSAYDEHRVSK-----------------LGASVAGGLI 84
++ AE++ T++LVF G+A ++ + K +A L
Sbjct: 7 KRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALA 66
Query: 85 VTVMIYAVGHISGAHMNPAVTLAFAAVRHFPWKQ-----IGELAGIAVGSAVCITSVLAG 139
+ +IY++G ISGAH+NPAVT+A ++ FP ++ + + G A+GS + + V G
Sbjct: 67 IAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACV--G 124
Query: 140 PVSGGSMNPARTVGPAIASSFYKGI 164
P A TVG A++ + GI
Sbjct: 125 PA-------AATVGGLGATAPFPGI 142
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 122 LAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYK-GIW----VYLVGPVTGTF 176
AG+ +G V G ++G S+NPART GP + S +W +Y++GP+ G
Sbjct: 175 FAGLVIGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAV 234
Query: 177 MGAWSYNMIRE 187
AW YN + +
Sbjct: 235 AAAWLYNYLAK 245
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 125 IAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNM 184
+A+G +V I + A +G SMNPAR+ GPA+ ++ W+Y VGP+ G + Y
Sbjct: 169 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEY 228
Query: 185 I 185
+
Sbjct: 229 V 229
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 31 VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVM 88
VW + F + V AE +A + V ++ GS E+ V + S+ GL + M
Sbjct: 7 VWTQ----AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATM 62
Query: 89 IYAVGHISGAHMNPAVTLAFAAVR 112
+ GHISG H+NPAVT+A R
Sbjct: 63 VQCFGHISGGHINPAVTVAMVCTR 86
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 125 IAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNM 184
+A+G +V I + A +G SMNPAR+ GPA+ ++ W+Y VGP+ G + Y
Sbjct: 169 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEY 228
Query: 185 I 185
+
Sbjct: 229 V 229
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 31 VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVM 88
VW + F + V AE +A + V ++ GS E+ V + S+ GL + M
Sbjct: 7 VWTQ----AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATM 62
Query: 89 IYAVGHISGAHMNPAVTLAFAAVR 112
+ GHISG H+NPAVT+A R
Sbjct: 63 VQCFGHISGGHINPAVTVAMVCTR 86
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 125 IAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNM 184
+A+G +V I + A +G SMNPAR+ GPA+ ++ W+Y VGP+ G + Y
Sbjct: 208 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEY 267
Query: 185 I 185
+
Sbjct: 268 V 268
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 31 VWNEHYPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVM 88
VW + F + V AE +A + V ++ GS E+ V + S+ GL + M
Sbjct: 46 VWTQ----AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATM 101
Query: 89 IYAVGHISGAHMNPAVTLAFAAVR 112
+ GHISG H+NPAVT+A R
Sbjct: 102 VQCFGHISGGHINPAVTVAMVCTR 125
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAH 99
FL+ V AE +AT + VF GSA + + L ++A GL + + A+G +SG H
Sbjct: 11 FLKAVFAEFLATLIFVFFGLGSAL--KWPSALPTILQIALAFGLAIGTLAQALGPVSGGH 68
Query: 100 MNPAVTLAF 108
+NPA+TLA
Sbjct: 69 INPAITLAL 77
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 125 IAVGSAVCITSVLAGPVSGGSMNPARTVGPAIA-SSFYKGIWVYLVGPVTGTFMGAWSYN 183
+++G +V + ++ +G SMNPAR+ GPA+ + F WV+ VGP+ G + A Y
Sbjct: 164 LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYF 223
Query: 184 MIRETDKPAHAISPGSLSFKLR 205
+ + P SLS R
Sbjct: 224 ---------YLLFPNSLSLSER 236
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 125 IAVGSAVCITSVLAGPVSGGSMNPARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNM 184
+A+G +V I + A +G SMNPAR+ GPA+ ++ W+Y VGP+ G + Y
Sbjct: 160 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEY 219
Query: 185 I 185
+
Sbjct: 220 V 220
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDEHR--VSKLGASVAGGLIVTVMIYAVGHISG 97
F + V AE +A + V ++ GS E V + S+ GL + M+ GHISG
Sbjct: 3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISG 62
Query: 98 AHMNPAVTLAFAAVR 112
H+NPAVT+A R
Sbjct: 63 GHINPAVTVAMVCTR 77
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDE---HRVSKLGASVAGGLIVTVMIYAVGHIS 96
F R IAE IAT L +++T + + + V LG + A G ++ V++Y IS
Sbjct: 37 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 97 GAHMNPAVTLAFAAVR 112
G H+NPAVT R
Sbjct: 97 GGHINPAVTFGLFLAR 112
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 122 LAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAI---ASSFYKGIWVYLVGPVTG 174
LA + +G AV + + P++G +NPAR+ G A+ ++ + W++ VGP G
Sbjct: 197 LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 252
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDE---HRVSKLGASVAGGLIVTVMIYAVGHIS 96
F R IAE IAT L +++T + + + V LG + A G ++ V++Y IS
Sbjct: 56 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 115
Query: 97 GAHMNPAVTLAFAAVR 112
G H+NPAVT R
Sbjct: 116 GGHINPAVTFGLFLAR 131
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 122 LAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAI---ASSFYKGIWVYLVGPVTG 174
LA + +G AV + + P++G +NPAR+ G A+ ++ + W++ VGP G
Sbjct: 216 LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 271
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDE---HRVSKLGASVAGGLIVTVMIYAVGHIS 96
F R IAE IAT L +++T + + + V LG + A G ++ V++Y IS
Sbjct: 60 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 97 GAHMNPAVTLAFAAVR 112
G H+NPAVT R
Sbjct: 120 GGHINPAVTFGLFLAR 135
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 122 LAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAI---ASSFYKGIWVYLVGPVTG 174
LA + +G AV + + P++G +NPAR+ G A+ ++ + W++ VGP G
Sbjct: 220 LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 275
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDE---HRVSKLGASVAGGLIVTVMIYAVGHIS 96
F R IAE IAT L +++T + + + V LG + A G ++ V++Y IS
Sbjct: 60 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 97 GAHMNPAVTLAFAAVR 112
G H+NPAVT R
Sbjct: 120 GGHINPAVTFGLFLAR 135
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 122 LAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAI---ASSFYKGIWVYLVGPVTG 174
LA + +G AV + + P++G +NPAR+ G A+ ++ + W++ VGP G
Sbjct: 220 LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 275
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%)
Query: 43 KVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNP 102
+ IAE + T LL+F G A + SV GL V + IY +SGAH+NP
Sbjct: 10 QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNP 69
Query: 103 AVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAG 139
AVT+A F +++ V A C +++ G
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYG 106
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 120 GELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIAS--------SFYKG-----IWV 166
G LA + +G + + GP++G +MNPAR GP + + +F G V
Sbjct: 176 GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLV 235
Query: 167 YLVGPVTGTFMGAWSYNMI 185
L GP+ G +GA++Y +
Sbjct: 236 PLFGPIVGAIVGAFAYRKL 254
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 40 FLRKVIAEIIATYLLVFVTCGSAALSAYDE---HRVSKLGASVAGGLIVTVMIYAVGHIS 96
F R IAE IAT L +++T + + + V LG + A G ++ V++Y IS
Sbjct: 37 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 97 GAHMNPAVTLAFAAVR 112
G H+NPAVT R
Sbjct: 97 GGHINPAVTFGLFLAR 112
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 122 LAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAI---ASSFYKGIWVYLVGPVTG 174
LA + +G AV + + P++G +NPAR+ G A+ ++ + W++ VGP G
Sbjct: 197 LAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIG 252
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%)
Query: 43 KVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLGASVAGGLIVTVMIYAVGHISGAHMNP 102
+ IAE + T LL+F G A + SV GL V + IY +SGAH+NP
Sbjct: 10 QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNP 69
Query: 103 AVTLAFAAVRHFPWKQIGELAGIAVGSAVCITSVLAG 139
AVT+A F +++ V A C +++ G
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYG 106
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 13/79 (16%)
Query: 120 GELAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIAS--------SFYKG-----IWV 166
G LA + +G + + GP++G +MNPAR GP + + +F G V
Sbjct: 176 GPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLV 235
Query: 167 YLVGPVTGTFMGAWSYNMI 185
L GP+ G +GA++Y +
Sbjct: 236 PLFGPIVGAIVGAFAYRKL 254
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 122 LAGIAVGSAVCITSVLAGPVSGGSMNPARTVGPAIAS-SFYKGIWVYLVGPVTGTFMGAW 180
A +G A+ I ++ +G +NPAR+ GPA+A+ SF W+Y +GP+ G F+
Sbjct: 199 FAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYS 258
Query: 181 SYNMIR----ETDKPAH 193
+ M + +T P
Sbjct: 259 IWQMWKWLNYQTTNPGQ 275
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 78 SVAGGLIVTVMIYAVGHISGAHMNPAVTLAFAAVRHFP 115
S G V V ++ +SG ++NPAVTLA R P
Sbjct: 89 SFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARAIP 126
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 13/104 (12%)
Query: 36 YPPGFLRKVIAEIIATYLLVFVTCGSAALSAYDEHRVSKLG----ASVAGGLIVTVMIYA 91
+ ++R+ I E + T++L+F+ G+ A + H G + GL V I
Sbjct: 5 FYKSYVREFIGEFLGTFVLMFLGEGATA----NFHTTGLSGDWYKLCLGWGLAVFFGILV 60
Query: 92 VGHISGAHMNPAVTLAFAAVRHFPWKQI-----GELAGIAVGSA 130
+SGAH+N AV++ +++ F K+I +L G VG++
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTS 104
>pdb|3RB9|A Chain A, Crystal Structure Of The M. Tuberculosis Beta Clamp
pdb|3RB9|B Chain B, Crystal Structure Of The M. Tuberculosis Beta Clamp
Length = 395
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 148 PARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRL 207
PAR P ++ V L G G + + Y + E A +SPGS+ R L
Sbjct: 27 PARPAVPVLSG-------VLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLL 79
Query: 208 KSNEQAHNNDPLD 220
+A N P+D
Sbjct: 80 SDITRALPNKPVD 92
>pdb|3P16|A Chain A, Crystal Structure Of Dna Polymerase Iii Sliding Clamp
pdb|3P16|B Chain B, Crystal Structure Of Dna Polymerase Iii Sliding Clamp
pdb|3P16|C Chain C, Crystal Structure Of Dna Polymerase Iii Sliding Clamp
pdb|3P16|D Chain D, Crystal Structure Of Dna Polymerase Iii Sliding Clamp
pdb|3P16|E Chain E, Crystal Structure Of Dna Polymerase Iii Sliding Clamp
pdb|3P16|F Chain F, Crystal Structure Of Dna Polymerase Iii Sliding Clamp
Length = 408
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 148 PARTVGPAIASSFYKGIWVYLVGPVTGTFMGAWSYNMIRETDKPAHAISPGSLSFKLRRL 207
PAR P ++ V L G G + + Y + E A +SPGS+ R L
Sbjct: 40 PARPAVPVLSG-------VLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLL 92
Query: 208 KSNEQAHNNDPLD 220
+A N P+D
Sbjct: 93 SDITRALPNKPVD 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,711,676
Number of Sequences: 62578
Number of extensions: 250921
Number of successful extensions: 682
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 86
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)