Query 027491
Match_columns 222
No_of_seqs 171 out of 1202
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 10:43:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027491.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027491hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14857 tatA twin arginine tr 99.8 1.7E-19 3.7E-24 139.6 8.6 50 120-169 1-50 (90)
2 PRK14858 tatA twin arginine tr 99.8 2.8E-19 6E-24 142.5 8.6 48 122-169 1-48 (108)
3 TIGR01410 tatB twin arginine-t 99.8 1.9E-19 4E-24 135.8 4.3 73 123-202 1-73 (80)
4 PRK00404 tatB sec-independent 99.8 4.5E-19 9.7E-24 146.9 6.9 47 122-168 1-47 (141)
5 PRK01770 sec-independent trans 99.8 2.2E-19 4.7E-24 152.5 4.1 48 122-169 1-48 (171)
6 PRK00708 sec-independent trans 99.7 9.1E-19 2E-23 152.7 5.4 48 122-169 1-48 (209)
7 PRK01919 tatB sec-independent 99.7 1.3E-18 2.8E-23 147.7 4.9 48 122-169 1-48 (169)
8 PRK04654 sec-independent trans 99.7 1.8E-18 3.9E-23 151.2 5.2 48 122-169 1-48 (214)
9 PRK04098 sec-independent trans 99.7 2.8E-18 6E-23 144.4 5.7 48 122-169 1-48 (158)
10 PRK03100 sec-independent trans 99.7 2.1E-18 4.6E-23 142.0 4.6 48 122-169 1-49 (136)
11 PRK01371 sec-independent trans 99.7 4.4E-17 9.5E-22 134.5 9.8 55 122-179 1-55 (137)
12 PRK00575 tatA twin arginine tr 99.7 3.1E-17 6.7E-22 127.8 7.9 48 122-169 1-48 (92)
13 PRK00182 tatB sec-independent 99.7 1.2E-17 2.6E-22 140.8 5.1 48 122-169 1-49 (160)
14 COG1826 TatA Sec-independent p 99.7 5E-17 1.1E-21 124.9 7.3 48 122-169 1-48 (94)
15 PRK14861 tatA twin arginine tr 99.7 3.5E-17 7.7E-22 118.7 6.0 49 121-169 1-49 (61)
16 PRK14860 tatA twin arginine tr 99.7 1.5E-17 3.2E-22 122.0 2.6 45 122-166 1-45 (64)
17 PRK14859 tatA twin arginine tr 99.7 2.2E-17 4.8E-22 120.7 2.6 46 122-167 1-46 (63)
18 PF02416 MttA_Hcf106: mttA/Hcf 99.6 2.5E-16 5.5E-21 110.8 5.3 45 125-169 1-45 (53)
19 PRK01614 tatE twin arginine tr 99.6 1.3E-16 2.8E-21 122.8 3.4 47 122-168 1-47 (85)
20 PRK03625 tatE twin arginine tr 99.6 2.5E-16 5.4E-21 116.4 4.5 47 122-168 1-47 (67)
21 TIGR01411 tatAE twin arginine- 99.6 3.1E-16 6.8E-21 108.4 4.3 45 124-168 1-45 (47)
22 PRK01833 tatA twin arginine tr 99.6 3.6E-16 7.9E-21 117.6 4.5 47 122-168 1-47 (74)
23 PRK04598 tatA twin arginine tr 99.6 4.6E-16 1E-20 118.8 3.5 46 122-167 1-46 (81)
24 PRK00442 tatA twin arginine tr 99.6 3.2E-15 7E-20 116.6 7.2 46 122-167 1-46 (92)
25 PRK00191 tatA twin arginine tr 99.6 1.2E-15 2.7E-20 117.2 4.6 47 123-169 1-47 (84)
26 PRK02958 tatA twin arginine tr 99.6 1.4E-15 3.1E-20 114.1 4.0 47 122-168 1-47 (73)
27 PRK01470 tatA twin arginine tr 99.6 1.6E-15 3.4E-20 107.0 3.8 45 123-167 1-45 (51)
28 PRK04561 tatA twin arginine tr 99.6 1.1E-15 2.4E-20 115.4 3.1 47 122-168 1-47 (75)
29 PRK03554 tatA twin arginine tr 99.5 3.4E-15 7.3E-20 115.9 3.8 46 122-167 1-46 (89)
30 PRK00720 tatA twin arginine tr 99.5 5.4E-15 1.2E-19 112.3 2.9 46 122-167 1-46 (78)
31 PRK14858 tatA twin arginine tr 83.6 2.1 4.5E-05 34.7 4.5 38 152-189 24-61 (108)
32 PRK14857 tatA twin arginine tr 83.5 4.9 0.00011 31.6 6.4 38 151-188 25-62 (90)
33 PF12732 YtxH: YtxH-like prote 83.2 2.5 5.3E-05 30.8 4.4 49 131-179 9-58 (74)
34 PRK14473 F0F1 ATP synthase sub 69.6 7.6 0.00016 31.9 4.1 12 120-131 1-12 (164)
35 PF06103 DUF948: Bacterial pro 67.6 13 0.00028 27.7 4.7 29 149-177 20-48 (90)
36 PRK00404 tatB sec-independent 62.7 35 0.00076 29.0 6.8 27 143-169 26-52 (141)
37 PRK14472 F0F1 ATP synthase sub 59.3 16 0.00035 30.4 4.3 14 119-132 10-23 (175)
38 KOG3726 Uncharacterized conser 56.2 11 0.00023 39.3 3.2 33 111-143 92-124 (717)
39 PRK13454 F0F1 ATP synthase sub 49.5 26 0.00057 29.7 4.1 35 134-168 41-75 (181)
40 PF13730 HTH_36: Helix-turn-he 42.9 65 0.0014 21.3 4.5 46 124-169 2-51 (55)
41 COG1687 AzlD Predicted branche 41.6 25 0.00055 28.7 2.6 19 139-157 25-43 (106)
42 PF01994 Trm56: tRNA ribose 2' 39.3 18 0.00039 30.1 1.5 41 113-153 23-67 (120)
43 PHA02047 phage lambda Rz1-like 39.1 94 0.002 25.3 5.5 70 130-199 5-83 (101)
44 TIGR02209 ftsL_broad cell divi 37.7 97 0.0021 22.4 5.0 25 156-180 32-56 (85)
45 PRK11677 hypothetical protein; 36.8 45 0.00098 27.9 3.5 15 128-142 3-17 (134)
46 PRK00708 sec-independent trans 35.9 61 0.0013 29.1 4.4 21 146-166 32-52 (209)
47 PRK00247 putative inner membra 35.6 1.9E+02 0.0042 28.5 8.1 18 139-156 315-332 (429)
48 PRK12703 tRNA 2'-O-methylase; 35.6 32 0.00069 32.7 2.7 43 114-156 73-119 (339)
49 TIGR02743 TraW type-F conjugat 35.0 14 0.0003 32.6 0.3 39 183-221 52-90 (202)
50 PRK14861 tatA twin arginine tr 32.6 96 0.0021 22.7 4.2 31 151-181 24-54 (61)
51 COG1826 TatA Sec-independent p 31.9 75 0.0016 24.4 3.8 34 151-184 23-56 (94)
52 PRK01371 sec-independent trans 30.8 1.1E+02 0.0024 25.9 4.9 29 155-183 27-55 (137)
53 PF06103 DUF948: Bacterial pro 30.8 1.1E+02 0.0024 22.6 4.5 29 144-172 22-50 (90)
54 PF10746 Phage_holin_6: Phage 30.6 48 0.001 25.1 2.4 37 119-161 25-61 (66)
55 COG3105 Uncharacterized protei 29.5 81 0.0017 26.9 3.8 16 127-142 7-22 (138)
56 PRK13455 F0F1 ATP synthase sub 29.5 77 0.0017 26.5 3.8 9 121-129 21-29 (184)
57 PRK01919 tatB sec-independent 29.1 2.9E+02 0.0064 24.2 7.3 13 144-156 27-39 (169)
58 PRK07352 F0F1 ATP synthase sub 28.1 2.1E+02 0.0045 23.8 6.1 11 119-129 11-21 (174)
59 PF04977 DivIC: Septum formati 27.9 78 0.0017 22.2 3.1 42 138-180 8-49 (80)
60 PRK13460 F0F1 ATP synthase sub 26.5 1.1E+02 0.0023 25.5 4.1 13 119-131 8-20 (173)
61 PRK07353 F0F1 ATP synthase sub 23.6 1.2E+02 0.0025 24.0 3.6 19 149-167 30-48 (140)
62 COG2165 PulG Type II secretory 23.4 1.7E+02 0.0037 21.8 4.4 32 124-156 9-40 (149)
63 TIGR01710 typeII_sec_gspG gene 23.1 1.8E+02 0.004 23.2 4.7 31 124-155 2-32 (134)
64 COG3167 PilO Tfp pilus assembl 22.6 99 0.0021 28.0 3.3 23 120-142 11-37 (211)
65 PRK09174 F0F1 ATP synthase sub 22.5 97 0.0021 27.1 3.2 38 131-168 60-97 (204)
66 PRK14475 F0F1 ATP synthase sub 21.7 1.3E+02 0.0028 24.9 3.7 19 122-140 7-25 (167)
67 PRK00888 ftsB cell division pr 21.1 4.2E+02 0.009 20.9 7.8 13 139-151 19-31 (105)
68 PTZ00269 variant surface glyco 21.0 1.9E+02 0.004 28.8 5.2 6 39-44 208-213 (472)
69 COG0711 AtpF F0F1-type ATP syn 21.0 1.4E+02 0.003 24.9 3.7 40 131-170 13-52 (161)
70 PF09680 Tiny_TM_bacill: Prote 20.8 43 0.00094 20.9 0.5 17 127-143 5-21 (24)
No 1
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=99.80 E-value=1.7e-19 Score=139.64 Aligned_cols=50 Identities=54% Similarity=0.945 Sum_probs=47.1
Q ss_pred ecccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 120 ASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 120 ~~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
|.||||||+||+||+||+||||||+|||+++|++|+++|+||++.+++++
T Consensus 1 m~mF~iG~~ElliIlvVaLlvfGP~KLP~lar~lGk~i~~fkk~~~~~~~ 50 (90)
T PRK14857 1 MNIFGIGLPEMAVILVIALLVFGPKKLPEIGRSLGKTLKGFQEASKEFEN 50 (90)
T ss_pred CCcccccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999999999999886653
No 2
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=99.79 E-value=2.8e-19 Score=142.47 Aligned_cols=48 Identities=42% Similarity=0.854 Sum_probs=45.8
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
||||||+||+||+||+||||||+|||+++|++|+++|+||++++++++
T Consensus 1 MF~iG~~ElliIlvVallvfGPkKLPelar~lGk~i~~fk~~~~d~k~ 48 (108)
T PRK14858 1 MFGIGMPELIVILVIALIVIGPQKLPDLARSLGRGLAEFKKATDDFKQ 48 (108)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887654
No 3
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=99.77 E-value=1.9e-19 Score=135.84 Aligned_cols=73 Identities=29% Similarity=0.514 Sum_probs=60.6
Q ss_pred cCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccccchhhcCCCCCCCCCC
Q 027491 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNPNNLNRTDT 202 (222)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd~s~Efk~elerEi~ldeIrk~~q~~~~~~~tn~ 202 (222)
|||||+|+++|+||+|+||||+|||+++|++|+++++||+++++ ++++++++.+.+|+++..++..+.+..++
T Consensus 1 f~ig~~EllvI~vvallv~GP~kLP~~~r~~G~~i~~~r~~~~~-------~~~~~~~e~~~~el~~~~~~~~~~~~~~~ 73 (80)
T TIGR01410 1 FDIGFSELLLIAVVALVVLGPERLPVAIRAVGKFVRRLRGMASD-------VKNELDEELKAQELDEQLKKAQQLRFLNL 73 (80)
T ss_pred CCCcHHHHHHHHHHHHheECchHHHHHHHHHHHHHHHHHHhhHh-------HHHHHHHHhchHhHHHHHHHHHHHhccCc
Confidence 89999999999999999999999999999999999999988874 45566677777888777665555444443
No 4
>PRK00404 tatB sec-independent translocase; Provisional
Probab=99.77 E-value=4.5e-19 Score=146.89 Aligned_cols=47 Identities=34% Similarity=0.661 Sum_probs=44.1
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk 168 (222)
||||||+||+||+||+||||||+|||+++|++|+++++||+.+++.+
T Consensus 1 MF~IG~~ELlvI~VVaLlV~GPkkLP~laR~lG~~i~~~rr~~~~~k 47 (141)
T PRK00404 1 MFGISFSELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFNAIK 47 (141)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998776543
No 5
>PRK01770 sec-independent translocase; Provisional
Probab=99.76 E-value=2.2e-19 Score=152.50 Aligned_cols=48 Identities=27% Similarity=0.544 Sum_probs=45.9
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
||||||+||+||+||+||||||+|||+++|++|+|+|+||++++++++
T Consensus 1 MF~IG~~ELllI~vVaLlV~GPerLP~~~r~lg~~i~~~R~~~~~~k~ 48 (171)
T PRK01770 1 MFDIGFSELLLVFVIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQN 48 (171)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887654
No 6
>PRK00708 sec-independent translocase; Provisional
Probab=99.75 E-value=9.1e-19 Score=152.67 Aligned_cols=48 Identities=33% Similarity=0.596 Sum_probs=46.3
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
||||||+||+||+||+||||||+|||+++|++|+++++||++.+++++
T Consensus 1 MFdIG~~ELlvI~vVaLvV~GPkrLP~~~R~lGk~v~k~R~~a~e~r~ 48 (209)
T PRK00708 1 MFDIGWSELLVIAIVLIVVVGPKDLPPMLRAFGKMTARMRKMAGEFRR 48 (209)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999987765
No 7
>PRK01919 tatB sec-independent translocase; Provisional
Probab=99.74 E-value=1.3e-18 Score=147.74 Aligned_cols=48 Identities=35% Similarity=0.583 Sum_probs=45.6
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
||||||+||+||+|||||||||+|||+++|++|++++++|++++++++
T Consensus 1 MFdIG~~ElliI~VVALiV~GPekLP~~aRtlGk~i~k~Rr~~~d~K~ 48 (169)
T PRK01919 1 MIDLGLSKLALIGVVALVVIGPERLPRVARTAGALFGRAQRYINDVKA 48 (169)
T ss_pred CCCCcHHHHHHHHHHHHheeCchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999886653
No 8
>PRK04654 sec-independent translocase; Provisional
Probab=99.73 E-value=1.8e-18 Score=151.25 Aligned_cols=48 Identities=33% Similarity=0.520 Sum_probs=45.0
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
||||||+||+||+||+||||||+|||+++|++|+++|+||+.++++++
T Consensus 1 MFgIG~~ELLlI~VVALlV~GPerLPe~aRtlGk~irk~R~~~~~vk~ 48 (214)
T PRK04654 1 MFDIGVGELTLIAVVALVVLGPERLPKAARFAGLWVRRARMQWDSVKQ 48 (214)
T ss_pred CCCccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988776543
No 9
>PRK04098 sec-independent translocase; Provisional
Probab=99.73 E-value=2.8e-18 Score=144.40 Aligned_cols=48 Identities=35% Similarity=0.605 Sum_probs=45.6
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
||||||+||+||+|||||||||+|||+++|++|+++|+||++++++++
T Consensus 1 MfgiG~~EllvI~vVaLlvfGP~KLP~~~r~lGk~ir~~K~~~~~~k~ 48 (158)
T PRK04098 1 MFGMGFFEILVILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTINDAKS 48 (158)
T ss_pred CCCCcHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999887643
No 10
>PRK03100 sec-independent translocase; Provisional
Probab=99.73 E-value=2.1e-18 Score=141.98 Aligned_cols=48 Identities=27% Similarity=0.437 Sum_probs=45.4
Q ss_pred cc-CCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
|| ||||+||+||+||+||||||+|||+++|++|+++|+||++++++++
T Consensus 1 Mf~~iG~~EllvI~vVaLvv~GPkrLP~~~r~lG~~vr~~R~~~~~~~~ 49 (136)
T PRK03100 1 MFANIGWGEMLVLVVAGLVILGPERLPGAIRWTARALRQARDYASGATS 49 (136)
T ss_pred CcccccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78 6999999999999999999999999999999999999999987764
No 11
>PRK01371 sec-independent translocase; Provisional
Probab=99.71 E-value=4.4e-17 Score=134.48 Aligned_cols=55 Identities=38% Similarity=0.724 Sum_probs=49.4
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLE 179 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd~s~Efk~ele 179 (222)
||||||+||+||+||+||||||+|||+++|++|+++|+||+++++++ +++++++.
T Consensus 1 MfgIG~~EllvIlvVallvfGPeKLP~~ar~lg~~ir~~R~~~~~ak---~~i~~Elg 55 (137)
T PRK01371 1 MFGIGPGELVVLVVLAVLVFGPDKLPKAARDAGRTLRQLREMANNAR---NDLRSELG 55 (137)
T ss_pred CCCccHHHHHHHHHHHhheeCchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence 89999999999999999999999999999999999999999988766 35555553
No 12
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=99.71 E-value=3.1e-17 Score=127.83 Aligned_cols=48 Identities=35% Similarity=0.636 Sum_probs=45.2
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
|||||++||+||++|+||||||+|||+++|++|+++|+||++.+++++
T Consensus 1 m~~iG~~ElliIlvi~LllFGpkKLPel~r~lGk~ir~fK~a~~~~~~ 48 (92)
T PRK00575 1 MGSLSPWHWAILAVVVILLFGAKKLPDAARSLGKSLRIFKSEVKEMQS 48 (92)
T ss_pred CCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 899999999999999999999999999999999999999988876553
No 13
>PRK00182 tatB sec-independent translocase; Provisional
Probab=99.70 E-value=1.2e-17 Score=140.81 Aligned_cols=48 Identities=29% Similarity=0.517 Sum_probs=45.1
Q ss_pred cc-CCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LF-GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 122 MF-gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
|| ||||+||+||+||+||||||+|||+++|++|+++|+||+++++.++
T Consensus 1 MF~~IG~~EllvIlvIaLlVfGPerLP~~~r~lg~~ir~~R~~~~~~k~ 49 (160)
T PRK00182 1 MFSSVGWGEILLLLIVGLIVIGPERLPRLIEDVRAALLAARTAINNAKQ 49 (160)
T ss_pred CcccccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78 6999999999999999999999999999999999999999987653
No 14
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=99.69 E-value=5e-17 Score=124.85 Aligned_cols=48 Identities=50% Similarity=0.895 Sum_probs=45.4
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
||+|||+||+||+||+||||||+|||+++|++|+++|+||+++++.++
T Consensus 1 M~~ig~~elliIlvV~lllfGpkKLP~l~r~~G~~i~~fKk~~~~~~~ 48 (94)
T COG1826 1 MFGIGWSELLIILVVALLVFGPKKLPEAGRDLGKAIREFKKAASDVKN 48 (94)
T ss_pred CCCCCHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHHhhhHH
Confidence 889999999999999999999999999999999999999999886653
No 15
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=99.69 E-value=3.5e-17 Score=118.70 Aligned_cols=49 Identities=47% Similarity=0.805 Sum_probs=45.4
Q ss_pred cccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
+|+||||+|+++|++|+|+||||+|||+++|++|+++|+||++.+++++
T Consensus 1 M~~~ig~~ElliI~vi~llvfGp~kLP~l~r~~G~~~~~fk~~~~~~~~ 49 (61)
T PRK14861 1 MFSNIGFPGLILILVVALIIFGPKKLPELGKALGKTLREFKKATKELTD 49 (61)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999999998887654
No 16
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=99.68 E-value=1.5e-17 Score=121.98 Aligned_cols=45 Identities=44% Similarity=0.840 Sum_probs=43.4
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~e 166 (222)
||||||+|++||++|+||||||+|||+++|++|+++|+||+++++
T Consensus 1 MfgiG~~ElliI~vIalllfGp~kLP~l~r~lGk~ir~fkk~~~~ 45 (64)
T PRK14860 1 MFGFGMPELIVILVIALVVFGPAKLPQLGQALGGAIRNFKKASNE 45 (64)
T ss_pred CCCccHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHccc
Confidence 899999999999999999999999999999999999999988775
No 17
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=99.67 E-value=2.2e-17 Score=120.67 Aligned_cols=46 Identities=41% Similarity=0.799 Sum_probs=44.0
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el 167 (222)
|||+|++||++|++|+|+||||+|||+++|++|+++|+||+++++.
T Consensus 1 MfgiG~~ElliIlvv~LlvfGp~kLP~l~r~lGk~i~~frk~~~~~ 46 (63)
T PRK14859 1 MFGIGMPELIVILVIVLIVFGAGKLPEIGGGLGKSIKNFKKATSEK 46 (63)
T ss_pred CCCccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999888754
No 18
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=99.64 E-value=2.5e-16 Score=110.76 Aligned_cols=45 Identities=56% Similarity=0.928 Sum_probs=40.7
Q ss_pred CChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 125 VGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 125 IG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
||++|+++|++|+++||||+|||+++|++|+++|+||++.++.++
T Consensus 1 ig~~El~iI~vvalllfGp~kLP~~~r~lG~~ir~fk~~~~~~~~ 45 (53)
T PF02416_consen 1 IGFPELLIILVVALLLFGPKKLPELARSLGKAIREFKKAINEAKE 45 (53)
T ss_dssp S-HHHHHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 699999999999999999999999999999999999999987664
No 19
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=99.63 E-value=1.3e-16 Score=122.81 Aligned_cols=47 Identities=28% Similarity=0.619 Sum_probs=44.1
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk 168 (222)
|||+|+|||+||++|+||+|||+|||+++|++|+.+|+||+.+++.+
T Consensus 1 M~GlG~~ELLIIlvIvLLLFG~kKLPeLgr~LGkaIkeFKka~~e~~ 47 (85)
T PRK01614 1 MEGLSITKLLVVGILIVLLFGTSKLRTLGADLGAALKGFKKAMRNDD 47 (85)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhcccc
Confidence 89999999999999999999999999999999999999998776543
No 20
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=99.63 E-value=2.5e-16 Score=116.40 Aligned_cols=47 Identities=21% Similarity=0.501 Sum_probs=44.1
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk 168 (222)
|||||++||+||++|+||||||+|||+++|++|+++|+||+.+++..
T Consensus 1 M~~ig~~elliIlvI~lllFGpkKLp~lg~~lGk~i~~Fk~~~~~~~ 47 (67)
T PRK03625 1 MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMNDDD 47 (67)
T ss_pred CCCCcHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999998776543
No 21
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=99.62 E-value=3.1e-16 Score=108.37 Aligned_cols=45 Identities=44% Similarity=0.805 Sum_probs=42.5
Q ss_pred CCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (222)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk 168 (222)
|+|++|+++|++|+++||||+|||+++|++|+++|+||+++++.+
T Consensus 1 gig~~ElliI~vi~llvfGp~kLP~~~r~lG~~i~~fk~~~~~~~ 45 (47)
T TIGR01411 1 GLSPPEWLIILVVILLLFGAKKLPELGRDLGKAIKEFKKALKEEE 45 (47)
T ss_pred CCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhhccc
Confidence 689999999999999999999999999999999999999887654
No 22
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=99.62 E-value=3.6e-16 Score=117.57 Aligned_cols=47 Identities=23% Similarity=0.515 Sum_probs=44.4
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk 168 (222)
|||+|+|||+||++|+||+|||+|||+++|++|+++|+||+.+++.+
T Consensus 1 m~g~g~~elliIl~i~lllFG~kKLP~l~~~lGk~ik~Fkk~~~~~~ 47 (74)
T PRK01833 1 MGGISIWQLLIIVAIIVLLFGTKKLRTLGTDLGESVKGFKKAMADDK 47 (74)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999998887653
No 23
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=99.60 E-value=4.6e-16 Score=118.79 Aligned_cols=46 Identities=28% Similarity=0.581 Sum_probs=43.7
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el 167 (222)
|||+|+|||+||++|+||+|||+|||+++|++|+++|+||+++++.
T Consensus 1 m~glg~~elliIlvivlllFG~kKLPelg~~lGk~i~~FKk~~~~~ 46 (81)
T PRK04598 1 MGGISIWQLLIIAVIVVLLFGTKKLRGIGSDLGSAVKGFKKAMSEE 46 (81)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence 8999999999999999999999999999999999999999887754
No 24
>PRK00442 tatA twin arginine translocase protein A; Provisional
Probab=99.59 E-value=3.2e-15 Score=116.55 Aligned_cols=46 Identities=28% Similarity=0.439 Sum_probs=43.3
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el 167 (222)
|+++|++||+||++|+||||||+|||+++|++|+++|+||+.+++.
T Consensus 1 Mg~~g~~elliIlvIvlllFG~~KLPelg~~lGk~ik~FKka~~e~ 46 (92)
T PRK00442 1 MGIFDWKHWIVILVVVVLVFGTKKLKNLGSDVGESIKGFRKAMNED 46 (92)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999999999999999877643
No 25
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=99.58 E-value=1.2e-15 Score=117.19 Aligned_cols=47 Identities=28% Similarity=0.640 Sum_probs=43.7
Q ss_pred cCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
+|||++||+||++|+||||||+|||+++|++|+++|+||++++++++
T Consensus 1 m~ig~~ElliI~vI~lllFGp~KLP~~~r~lGk~ir~FK~~~~~~~~ 47 (84)
T PRK00191 1 MSLGPWEIGIIVLLIIVLFGAKKLPDAARSIGRSMRIFKSEVKEMSK 47 (84)
T ss_pred CCCcHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 47999999999999999999999999999999999999998886653
No 26
>PRK02958 tatA twin arginine translocase protein A; Provisional
Probab=99.57 E-value=1.4e-15 Score=114.10 Aligned_cols=47 Identities=26% Similarity=0.460 Sum_probs=44.0
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk 168 (222)
|+++|+|||+||++|+||||||+|||+++|++|+++|+||+.+++.+
T Consensus 1 mg~~g~~elliIl~IvlllFG~kKLPelgr~lGkair~FK~~~~~~~ 47 (73)
T PRK02958 1 MGSFSIWHWLIVLVIVVLVFGTKKLRNIGSDLGGAVKGFKDGMKEGE 47 (73)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhcccc
Confidence 78999999999999999999999999999999999999998877543
No 27
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=99.57 E-value=1.6e-15 Score=107.00 Aligned_cols=45 Identities=24% Similarity=0.532 Sum_probs=41.9
Q ss_pred cCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (222)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el 167 (222)
.|||++|+++|++|+|+||||+|||+++|++|+++|+||+++++.
T Consensus 1 mgig~~elliI~vi~llvFGp~KLP~l~r~lG~~i~~Fk~~~~~~ 45 (51)
T PRK01470 1 MGMSFSHLLIVLLIIFVLFGAGKLPQVMSDLAKGLKAFKDGMKDD 45 (51)
T ss_pred CCCCHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHhccc
Confidence 379999999999999999999999999999999999999877654
No 28
>PRK04561 tatA twin arginine translocase protein A; Provisional
Probab=99.57 E-value=1.1e-15 Score=115.44 Aligned_cols=47 Identities=30% Similarity=0.452 Sum_probs=44.0
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk 168 (222)
|+++|+|||+||++|+||+|||+|||+++|++|+++++||+.+++.+
T Consensus 1 Mgg~s~~ellIIlvIvlLlFG~~KLPel~r~lGk~ik~FKk~~~e~~ 47 (75)
T PRK04561 1 MGSFSIWHWLVVLVIVLLVFGTKRLTSGAKDLGSAVKEFKKGMHDDD 47 (75)
T ss_pred CCCCcHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 88999999999999999999999999999999999999998777543
No 29
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=99.54 E-value=3.4e-15 Score=115.91 Aligned_cols=46 Identities=26% Similarity=0.591 Sum_probs=43.3
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el 167 (222)
|||+|+|||+||++|+||||||+|||+++|++|+++|+||+.+++.
T Consensus 1 M~glG~~eLlIIlvIvLLlFG~kKLPelgr~LGkaireFKka~~e~ 46 (89)
T PRK03554 1 MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDD 46 (89)
T ss_pred CCCccHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence 8899999999999999999999999999999999999999876643
No 30
>PRK00720 tatA twin arginine translocase protein A; Provisional
Probab=99.52 E-value=5.4e-15 Score=112.28 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=43.3
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el 167 (222)
|+++|+|||+||++|+||+|||+|||+++|++|+++++||+.+++.
T Consensus 1 Mgg~g~~ellIIlvIvlllFG~kKLP~l~~~lGk~ik~FKk~~~~~ 46 (78)
T PRK00720 1 MGSFSIWHWLIVLAVVLLLFGRGKISELMGDVAKGIKSFKKGMADD 46 (78)
T ss_pred CCCCcHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhhccc
Confidence 8999999999999999999999999999999999999999777643
No 31
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=83.59 E-value=2.1 Score=34.72 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccccch
Q 027491 152 NLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDIST 189 (222)
Q Consensus 152 ~lGK~iR~fR~~~~elkd~s~Efk~elerEi~ldeIrk 189 (222)
.|=...|.+-++++++++..++++++++++.+.+++++
T Consensus 24 KLPelar~lGk~i~~fk~~~~d~k~~i~~E~~~~e~~~ 61 (108)
T PRK14858 24 KLPDLARSLGRGLAEFKKATDDFKQSMQEESRTAEEKE 61 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444555555666666666777777766555444443
No 32
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=83.51 E-value=4.9 Score=31.57 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccccc
Q 027491 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDIS 188 (222)
Q Consensus 151 R~lGK~iR~fR~~~~elkd~s~Efk~elerEi~ldeIr 188 (222)
+.+-...|.+-++++++++..++++++++++.+-.+..
T Consensus 25 ~KLP~lar~lGk~i~~fkk~~~~~~~e~~~~~~~~~~~ 62 (90)
T PRK14857 25 KKLPEIGRSLGKTLKGFQEASKEFENEIKREMAEPEQE 62 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55666667777777888888888888887655444433
No 33
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=83.22 E-value=2.5 Score=30.84 Aligned_cols=49 Identities=24% Similarity=0.363 Sum_probs=38.0
Q ss_pred HHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHH
Q 027491 131 LVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSRE-FKSTLE 179 (222)
Q Consensus 131 LVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd~s~E-fk~ele 179 (222)
.++++++-+++-|++=.++-+.+......+++...++.+...+ +++.++
T Consensus 9 a~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~ 58 (74)
T PF12732_consen 9 AAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKDLYEEAKEKVKEKAE 58 (74)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888999999999999999999999888777766544433 444443
No 34
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=69.64 E-value=7.6 Score=31.87 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=9.0
Q ss_pred ecccCCChHHHH
Q 027491 120 ASLFGVGAPEAL 131 (222)
Q Consensus 120 ~~MFgIG~~ELL 131 (222)
|.|||+.|+-++
T Consensus 1 ~~~~~~~~~~~~ 12 (164)
T PRK14473 1 MEKLGINLGLLI 12 (164)
T ss_pred CCcccCcHHHHH
Confidence 569999887654
No 35
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=67.60 E-value=13 Score=27.67 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 027491 149 VARNLGKTLRAFQPTIRELQDVSREFKST 177 (222)
Q Consensus 149 laR~lGK~iR~fR~~~~elkd~s~Efk~e 177 (222)
..+.+++.++++++.++.+++..++..++
T Consensus 20 ~l~~l~~~l~~~~~ti~~l~~~~~~i~~e 48 (90)
T PF06103_consen 20 VLKKLKKTLDEVNKTIDTLQEQVDPITKE 48 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555566666655555555444444433
No 36
>PRK00404 tatB sec-independent translocase; Provisional
Probab=62.70 E-value=35 Score=28.97 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=15.8
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 143 PKGLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 143 PkKLPelaR~lGK~iR~fR~~~~elkd 169 (222)
|+=.-.+++.+|++-+.|++..+++++
T Consensus 26 P~laR~lG~~i~~~rr~~~~~k~ei~~ 52 (141)
T PRK00404 26 PGAARTAGLWIGRLKRSFNAIKQEVER 52 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666665544
No 37
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=59.30 E-value=16 Score=30.40 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=9.4
Q ss_pred eecccCCChHHHHH
Q 027491 119 YASLFGVGAPEALV 132 (222)
Q Consensus 119 ~~~MFgIG~~ELLV 132 (222)
-.+||++.++.++.
T Consensus 10 ~~~~~~~~~~~~~~ 23 (175)
T PRK14472 10 SGGLLSPNPGLIFW 23 (175)
T ss_pred cCCccCCCHHHHHH
Confidence 45689998766533
No 38
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.15 E-value=11 Score=39.28 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=30.4
Q ss_pred hccccceeeecccCCChHHHHHHHhhhheeECC
Q 027491 111 RRCKRGVFYASLFGVGAPEALVIGVVALLVFGP 143 (222)
Q Consensus 111 ~~~~~~~~~~~MFgIG~~ELLVIlVVALLVfGP 143 (222)
=||...-++-++||-++.-++.+++.+.+.+||
T Consensus 92 vr~~~llllp~~~gk~grt~l~v~a~a~l~~GP 124 (717)
T KOG3726|consen 92 VRAAKLLLLPEAFGKSGRTILLVFAFATLIFGP 124 (717)
T ss_pred HHHHHHHHhHHHHccCCchhhHHHHHHHHHhCc
Confidence 478888899999999999999999999999999
No 39
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=49.50 E-value=26 Score=29.66 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=17.8
Q ss_pred HhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 134 GVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (222)
Q Consensus 134 lVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk 168 (222)
++|.+++++-=-+|.+.+.+-+--..+++..++.+
T Consensus 41 F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae 75 (181)
T PRK13454 41 LVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAE 75 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33334444333357777766655555554444443
No 40
>PF13730 HTH_36: Helix-turn-helix domain
Probab=42.92 E-value=65 Score=21.29 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=34.7
Q ss_pred CCChHHHHHHHhhhheeECCc----cHHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 124 GVGAPEALVIGVVALLVFGPK----GLAEVARNLGKTLRAFQPTIRELQD 169 (222)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPk----KLPelaR~lGK~iR~fR~~~~elkd 169 (222)
++++.|.+|.+.++-..-+.. -...+++.+|-..+.++++++++++
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~ 51 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEE 51 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 577888888888777763333 3688999999998888888877653
No 41
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=41.58 E-value=25 Score=28.72 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=17.7
Q ss_pred eeECCccHHHHHHHHHHHH
Q 027491 139 LVFGPKGLAEVARNLGKTL 157 (222)
Q Consensus 139 LVfGPkKLPelaR~lGK~i 157 (222)
++|++.|.|++.+.+||++
T Consensus 25 ~if~~~~ppq~v~~lgk~l 43 (106)
T COG1687 25 LIFKSGRPPQFVGYLGKVL 43 (106)
T ss_pred HhcCCCCchHHHHHHHHhc
Confidence 6899999999999999985
No 42
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=39.35 E-value=18 Score=30.12 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=24.9
Q ss_pred cccceeeecccCCChHHHHHHHh----hhheeECCccHHHHHHHH
Q 027491 113 CKRGVFYASLFGVGAPEALVIGV----VALLVFGPKGLAEVARNL 153 (222)
Q Consensus 113 ~~~~~~~~~MFgIG~~ELLVIlV----VALLVfGPkKLPelaR~l 153 (222)
-.+.++|..|.|+...+.+=-+= =.|+|+|.+|.|.-.-.+
T Consensus 23 ~~G~VVHLTMYG~~i~dvi~~Ir~~~~~~lvVVGaeKVP~evYe~ 67 (120)
T PF01994_consen 23 KGGKVVHLTMYGENIDDVIDEIRESCKDLLVVVGAEKVPGEVYEL 67 (120)
T ss_dssp -SSEEEEE-TTSEEHHHCHHHHHHCTSEEEEEE-SS---CCHHHH
T ss_pred cCCeEEEEEecCCchHHHHHHHhccCCCEEEEECCCcCCHHHHhh
Confidence 36788999999999998443222 248999999999654443
No 43
>PHA02047 phage lambda Rz1-like protein
Probab=39.08 E-value=94 Score=25.30 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=35.8
Q ss_pred HHHHHhhhheeECCccHHHH-HHHHHHHHHHHHHHHHHHHHhH---HHHHHH---HH--HhhCccccchhhcCCCCCCC
Q 027491 130 ALVIGVVALLVFGPKGLAEV-ARNLGKTLRAFQPTIRELQDVS---REFKST---LE--REIGLDDISTSTQNPNNLNR 199 (222)
Q Consensus 130 LLVIlVVALLVfGPkKLPel-aR~lGK~iR~fR~~~~elkd~s---~Efk~e---le--rEi~ldeIrk~~q~~~~~~~ 199 (222)
++.|++++++..|..-.-.. -|.+|..=++.++..+.++... ...++. ++ .+...+|++..+++..+|.-
T Consensus 5 ~~~~~~~v~~~~g~~y~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n~~WaD 83 (101)
T PHA02047 5 IVAILVLVVVALGASYGFVQSYRALGIAHEEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQNRPWAD 83 (101)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 45566666666664433333 4566666666665555443221 111121 21 23445778888877666643
No 44
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=37.66 E-value=97 Score=22.38 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 027491 156 TLRAFQPTIRELQDVSREFKSTLER 180 (222)
Q Consensus 156 ~iR~fR~~~~elkd~s~Efk~eler 180 (222)
-+...+....++++.-++++.++..
T Consensus 32 ~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 32 ELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443
No 45
>PRK11677 hypothetical protein; Provisional
Probab=36.76 E-value=45 Score=27.85 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=10.2
Q ss_pred HHHHHHHhhhheeEC
Q 027491 128 PEALVIGVVALLVFG 142 (222)
Q Consensus 128 ~ELLVIlVVALLVfG 142 (222)
|.+.+|++|+-+|+|
T Consensus 3 W~~a~i~livG~iiG 17 (134)
T PRK11677 3 WEYALIGLVVGIIIG 17 (134)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566667777666666
No 46
>PRK00708 sec-independent translocase; Provisional
Probab=35.91 E-value=61 Score=29.11 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027491 146 LAEVARNLGKTLRAFQPTIRE 166 (222)
Q Consensus 146 LPelaR~lGK~iR~fR~~~~e 166 (222)
+-...+.+-+..++||+.+++
T Consensus 32 lGk~v~k~R~~a~e~r~~~~e 52 (209)
T PRK00708 32 FGKMTARMRKMAGEFRRQFDE 52 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445566655543
No 47
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=35.62 E-value=1.9e+02 Score=28.49 Aligned_cols=18 Identities=11% Similarity=0.206 Sum_probs=11.2
Q ss_pred eeECCccHHHHHHHHHHH
Q 027491 139 LVFGPKGLAEVARNLGKT 156 (222)
Q Consensus 139 LVfGPkKLPelaR~lGK~ 156 (222)
.++-|-+.|++-++....
T Consensus 315 ~~~~p~~~~~~~~~~~~~ 332 (429)
T PRK00247 315 MIITPWRAPELHAENAEI 332 (429)
T ss_pred ccCCcccHHHHHHHHHHH
Confidence 345677888886655433
No 48
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=35.59 E-value=32 Score=32.72 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=34.2
Q ss_pred ccceeeecccCCChHHHHHHHh----hhheeECCccHHHHHHHHHHH
Q 027491 114 KRGVFYASLFGVGAPEALVIGV----VALLVFGPKGLAEVARNLGKT 156 (222)
Q Consensus 114 ~~~~~~~~MFgIG~~ELLVIlV----VALLVfGPkKLPelaR~lGK~ 156 (222)
.+.++|..|+|+.+.+.+--+- =.|+|+|.+|.|.=.-.++-+
T Consensus 73 ~g~vvhltmyg~~~~~~~~~i~~~~~~~~~vvg~~kvp~~~y~~ad~ 119 (339)
T PRK12703 73 HGIRVHLTMYGRPIEDVIDEIRESGKDVMVLVGSEKVPIEAYEIADY 119 (339)
T ss_pred CCEEEEEecCCCchHHHHHHHhccCCCEEEEECCCcCCHHHHhhccc
Confidence 6899999999999998765554 368999999999766655443
No 49
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=34.99 E-value=14 Score=32.61 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=20.1
Q ss_pred CccccchhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 027491 183 GLDDISTSTQNPNNLNRTDTMSTPPSVTSTEDSQTVADP 221 (222)
Q Consensus 183 ~ldeIrk~~q~~~~~~~tn~astpss~t~~~~a~~v~dp 221 (222)
+++++.++.++....+..++.+-+...+..+.+.--+||
T Consensus 52 el~~~~~~~~~r~~~~~~rP~pv~gL~~a~~~~t~~~DP 90 (202)
T TIGR02743 52 ELKAMQQRFQSRVLEHVKRPPPVPGLGTTETPKTWYFDP 90 (202)
T ss_pred hHHHHHHHHHHHHHHhccCCCCCCCCcccccCceEEeCC
Confidence 344555444444444444555544555555555555555
No 50
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=32.61 E-value=96 Score=22.67 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027491 151 RNLGKTLRAFQPTIRELQDVSREFKSTLERE 181 (222)
Q Consensus 151 R~lGK~iR~fR~~~~elkd~s~Efk~elerE 181 (222)
+.+-+..|.+-++++++++..++++++.+.+
T Consensus 24 ~kLP~l~r~~G~~~~~fk~~~~~~~~~~~~~ 54 (61)
T PRK14861 24 KKLPELGKALGKTLREFKKATKELTDDDFQE 54 (61)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh
Confidence 4555566666667777777667777666543
No 51
>COG1826 TatA Sec-independent protein secretion pathway components [Intracellular trafficking and secretion]
Probab=31.87 E-value=75 Score=24.43 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCc
Q 027491 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREIGL 184 (222)
Q Consensus 151 R~lGK~iR~fR~~~~elkd~s~Efk~elerEi~l 184 (222)
+.+....|.+-++++++++..++++++.+.+...
T Consensus 23 kKLP~l~r~~G~~i~~fKk~~~~~~~e~~~~~~~ 56 (94)
T COG1826 23 KKLPEAGRDLGKAIREFKKAASDVKNELDEELKL 56 (94)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 3444445555556666767667777777655433
No 52
>PRK01371 sec-independent translocase; Provisional
Probab=30.77 E-value=1.1e+02 Score=25.87 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhC
Q 027491 155 KTLRAFQPTIRELQDVSREFKSTLEREIG 183 (222)
Q Consensus 155 K~iR~fR~~~~elkd~s~Efk~elerEi~ 183 (222)
+.+|.+.++++++++..++++++++.|.+
T Consensus 27 ~~ar~lg~~ir~~R~~~~~ak~~i~~Elg 55 (137)
T PRK01371 27 KAARDAGRTLRQLREMANNARNDLRSELG 55 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444444444444444444443
No 53
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=30.77 E-value=1.1e+02 Score=22.64 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=17.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 027491 144 KGLAEVARNLGKTLRAFQPTIRELQDVSR 172 (222)
Q Consensus 144 kKLPelaR~lGK~iR~fR~~~~elkd~s~ 172 (222)
.++-+..+.+-+.++.+++...++.+..+
T Consensus 22 ~~l~~~l~~~~~ti~~l~~~~~~i~~e~~ 50 (90)
T PF06103_consen 22 KKLKKTLDEVNKTIDTLQEQVDPITKEIN 50 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 56666666667777666665555444333
No 54
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=30.62 E-value=48 Score=25.07 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=25.5
Q ss_pred eecccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHH
Q 027491 119 YASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQ 161 (222)
Q Consensus 119 ~~~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR 161 (222)
-..|+|+++.|++.|+-++..|+ +++-.+=+++++.|
T Consensus 25 a~~f~GLslneWfyiati~Ytvl------Qig~~v~k~v~~~k 61 (66)
T PF10746_consen 25 ARYFWGLSLNEWFYIATIAYTVL------QIGYLVWKKVRDWK 61 (66)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Confidence 34568999999999999988765 34444444444444
No 55
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.52 E-value=81 Score=26.92 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=13.5
Q ss_pred hHHHHHHHhhhheeEC
Q 027491 127 APEALVIGVVALLVFG 142 (222)
Q Consensus 127 ~~ELLVIlVVALLVfG 142 (222)
.||...|++|+-|++|
T Consensus 7 ~W~~a~igLvvGi~IG 22 (138)
T COG3105 7 TWEYALIGLVVGIIIG 22 (138)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5888889888888887
No 56
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=29.51 E-value=77 Score=26.55 Aligned_cols=9 Identities=11% Similarity=0.538 Sum_probs=4.8
Q ss_pred cccCCChHH
Q 027491 121 SLFGVGAPE 129 (222)
Q Consensus 121 ~MFgIG~~E 129 (222)
+||++.++.
T Consensus 21 ~~~~~~~t~ 29 (184)
T PRK13455 21 PFFSLSNTD 29 (184)
T ss_pred CCCCCcchH
Confidence 566664433
No 57
>PRK01919 tatB sec-independent translocase; Provisional
Probab=29.10 E-value=2.9e+02 Score=24.23 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=5.2
Q ss_pred ccHHHHHHHHHHH
Q 027491 144 KGLAEVARNLGKT 156 (222)
Q Consensus 144 kKLPelaR~lGK~ 156 (222)
+=.-.+++.+|++
T Consensus 27 ~~aRtlGk~i~k~ 39 (169)
T PRK01919 27 RVARTAGALFGRA 39 (169)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 58
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=28.12 E-value=2.1e+02 Score=23.78 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=6.7
Q ss_pred eecccCCChHH
Q 027491 119 YASLFGVGAPE 129 (222)
Q Consensus 119 ~~~MFgIG~~E 129 (222)
+.++||+.++-
T Consensus 11 ~~~~~~~~~~~ 21 (174)
T PRK07352 11 AEGGFGLNLNL 21 (174)
T ss_pred ccCCCCCchhH
Confidence 45677776643
No 59
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=27.86 E-value=78 Score=22.19 Aligned_cols=42 Identities=33% Similarity=0.570 Sum_probs=19.8
Q ss_pred heeECCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 027491 138 LLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLER 180 (222)
Q Consensus 138 LLVfGPkKLPelaR~lGK~iR~fR~~~~elkd~s~Efk~eler 180 (222)
++++|-..+-.+ ..+-+-+..+++...++++..++.+.+++.
T Consensus 8 ~~~~~~~~~~~~-~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 8 FLVFGISGYSRY-YQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHhcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443433333 234444555555555555555555555544
No 60
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.45 E-value=1.1e+02 Score=25.49 Aligned_cols=13 Identities=23% Similarity=0.123 Sum_probs=8.0
Q ss_pred eecccCCChHHHH
Q 027491 119 YASLFGVGAPEAL 131 (222)
Q Consensus 119 ~~~MFgIG~~ELL 131 (222)
.+.||++.++.++
T Consensus 8 ~~~~l~~~~~~~~ 20 (173)
T PRK13460 8 GLSLLDVNPGLVV 20 (173)
T ss_pred CCCccCCcHhHHH
Confidence 3567777765544
No 61
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=23.62 E-value=1.2e+02 Score=24.01 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027491 149 VARNLGKTLRAFQPTIREL 167 (222)
Q Consensus 149 laR~lGK~iR~fR~~~~el 167 (222)
+.+.+.+--..+.....+.
T Consensus 30 i~~~l~~R~~~I~~~l~~A 48 (140)
T PRK07353 30 VGKVVEEREDYIRTNRAEA 48 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444333444444433
No 62
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.42 E-value=1.7e+02 Score=21.80 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=21.2
Q ss_pred CCChHHHHHHHhhhheeECCccHHHHHHHHHHH
Q 027491 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGKT 156 (222)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~ 156 (222)
|+..-|++|+++|+-++.. -=+|.+.....+.
T Consensus 9 GFTLiElLVvl~Iigil~~-~~~p~~~~~~~~~ 40 (149)
T COG2165 9 GFTLIELLVVLAIIGILAA-LALPSLQGSIDKA 40 (149)
T ss_pred CcchHHHHHHHHHHHHHHH-HHHhhhhhHHHHH
Confidence 7788898888777665544 4456666555554
No 63
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=23.09 E-value=1.8e+02 Score=23.21 Aligned_cols=31 Identities=19% Similarity=0.128 Sum_probs=18.1
Q ss_pred CCChHHHHHHHhhhheeECCccHHHHHHHHHH
Q 027491 124 GVGAPEALVIGVVALLVFGPKGLAEVARNLGK 155 (222)
Q Consensus 124 gIG~~ELLVIlVVALLVfGPkKLPelaR~lGK 155 (222)
|+..-|++|+++|.-++.+ =-+|.+...+.+
T Consensus 2 GFTLiEllivlaIigil~~-i~~p~~~~~~~~ 32 (134)
T TIGR01710 2 GFTLLEIMVVLVILGLLAA-LVAPKLFSQADK 32 (134)
T ss_pred ceeHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5667898887777655543 234555444433
No 64
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.57 E-value=99 Score=28.01 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=12.8
Q ss_pred ecccCCChH----HHHHHHhhhheeEC
Q 027491 120 ASLFGVGAP----EALVIGVVALLVFG 142 (222)
Q Consensus 120 ~~MFgIG~~----ELLVIlVVALLVfG 142 (222)
.-..+||-| .++++++++++|+|
T Consensus 11 L~l~Ni~eWpl~~rlv~~lL~~~~V~~ 37 (211)
T COG3167 11 LDLLNIGEWPLAPRLVFCLLAVAAVLG 37 (211)
T ss_pred cccccccccchhHHHHHHHHHHHHHHH
Confidence 344567743 45556666555555
No 65
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=22.46 E-value=97 Score=27.05 Aligned_cols=38 Identities=5% Similarity=-0.015 Sum_probs=18.7
Q ss_pred HHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHH
Q 027491 131 LVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQ 168 (222)
Q Consensus 131 LVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elk 168 (222)
+|.++|.++|+.-=-+|.+.+.+-+--..+.+.+++.+
T Consensus 60 ~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae 97 (204)
T PRK09174 60 AITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAA 97 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444434456666666555444544444433
No 66
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=21.71 E-value=1.3e+02 Score=24.92 Aligned_cols=19 Identities=5% Similarity=-0.255 Sum_probs=9.4
Q ss_pred ccCCChHHHHHHHhhhhee
Q 027491 122 LFGVGAPEALVIGVVALLV 140 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLV 140 (222)
+++--+|.++..+|+++++
T Consensus 7 ~~~~~~w~~i~f~il~~iL 25 (167)
T PRK14475 7 LSNPEFWVGAGLLIFFGIL 25 (167)
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 3444456655555444433
No 67
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.09 E-value=4.2e+02 Score=20.86 Aligned_cols=13 Identities=38% Similarity=0.669 Sum_probs=9.1
Q ss_pred eeECCccHHHHHH
Q 027491 139 LVFGPKGLAEVAR 151 (222)
Q Consensus 139 LVfGPkKLPelaR 151 (222)
++||...+..+.+
T Consensus 19 l~~g~~G~~~~~~ 31 (105)
T PRK00888 19 LWFGKNGILDYWR 31 (105)
T ss_pred HhccCCcHHHHHH
Confidence 7789987755544
No 68
>PTZ00269 variant surface glycoprotein; Provisional
Probab=21.04 E-value=1.9e+02 Score=28.80 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=3.2
Q ss_pred cccCCC
Q 027491 39 LLCSSS 44 (222)
Q Consensus 39 ~~~~~~ 44 (222)
-||...
T Consensus 208 CLCA~~ 213 (472)
T PTZ00269 208 CLCAMH 213 (472)
T ss_pred hcccCC
Confidence 566543
No 69
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=21.00 E-value=1.4e+02 Score=24.93 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=17.8
Q ss_pred HHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027491 131 LVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDV 170 (222)
Q Consensus 131 LVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd~ 170 (222)
++.++|.++++.-=-.|-+.+.+-.--.++.+...+.+..
T Consensus 13 ~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~ 52 (161)
T COG0711 13 LIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERL 52 (161)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333332233555555555555555555444433
No 70
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.80 E-value=43 Score=20.88 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=12.5
Q ss_pred hHHHHHHHhhhheeECC
Q 027491 127 APEALVIGVVALLVFGP 143 (222)
Q Consensus 127 ~~ELLVIlVVALLVfGP 143 (222)
..-+++++.|.|+++|-
T Consensus 5 ~FalivVLFILLiIvG~ 21 (24)
T PF09680_consen 5 GFALIVVLFILLIIVGA 21 (24)
T ss_pred cchhHHHHHHHHHHhcc
Confidence 34577888888888874
Done!