Query 027491
Match_columns 222
No_of_seqs 171 out of 1202
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 18:03:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027491.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027491hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l16_A SEC-independent protein 99.8 1.6E-19 5.6E-24 135.1 4.9 70 121-194 1-70 (78)
2 2l16_A SEC-independent protein 57.3 5.5 0.00019 29.3 2.1 43 151-193 24-66 (78)
3 2yy8_A ATRM56, UPF0106 protein 36.5 13 0.00045 32.0 1.6 41 114-154 74-121 (201)
4 2cqq_A RSGI RUH-037, DNAJ homo 28.1 31 0.0011 24.5 2.1 34 134-167 19-55 (72)
5 2o3a_A UPF0106 protein AF_0751 24.1 24 0.00082 29.9 1.0 43 110-153 72-117 (178)
6 2gxg_A 146AA long hypothetical 22.5 75 0.0026 22.7 3.4 41 122-165 32-72 (146)
7 3vjz_A DMP19, putative unchara 17.9 1.1E+02 0.0037 25.5 3.7 34 134-167 81-114 (166)
8 2w6b_A RHO guanine nucleotide 16.9 2.7E+02 0.0092 19.5 5.0 31 151-181 6-36 (56)
9 1gp7_A Phospholipase A2; snake 16.5 43 0.0015 26.9 0.9 35 127-161 3-37 (151)
10 2cjj_A Radialis; plant develop 14.0 1E+02 0.0036 22.9 2.4 44 133-176 18-65 (93)
No 1
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=99.77 E-value=1.6e-19 Score=135.09 Aligned_cols=70 Identities=26% Similarity=0.484 Sum_probs=46.9
Q ss_pred cccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccccchhhcCC
Q 027491 121 SLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQNP 194 (222)
Q Consensus 121 ~MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~elkd~s~Efk~elerEi~ldeIrk~~q~~ 194 (222)
+|||||++||+||+||+||||||+|||+++|++|+++|+||+++++.++.. +++. ++.++++++++++++
T Consensus 1 MMf~ig~~ElliIlvVaLlvfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e~---~~~~-~~~el~~~~~~~~~~ 70 (78)
T 2l16_A 1 MFSNIGIPGLILIFVIALIIFGPSKLPEIGRAAGRTLLEFKSATKSLVSGD---EKEE-KSAELTAVKQDKNAG 70 (78)
T ss_dssp CCSSSCHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHHHCC---C-------------------
T ss_pred CCCCCCHHHHHHHHHHHhheeCccHhHHHHHHHHHHHHHHHHHHHHhHhhh---hHHh-hHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999988765422 2222 334556666655544
No 2
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=57.31 E-value=5.5 Score=29.30 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCccccchhhcC
Q 027491 151 RNLGKTLRAFQPTIRELQDVSREFKSTLEREIGLDDISTSTQN 193 (222)
Q Consensus 151 R~lGK~iR~fR~~~~elkd~s~Efk~elerEi~ldeIrk~~q~ 193 (222)
+.+-...|.+-++++++++..++++++.+++.+.+|+++--++
T Consensus 24 kkLP~l~r~lGk~ir~fK~~~~~~~~e~~~~~~~~el~~~~~~ 66 (78)
T 2l16_A 24 SKLPEIGRAAGRTLLEFKSATKSLVSGDEKEEKSAELTAVKQD 66 (78)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHhHhhhhHHhhHHHHHHHHHH
Confidence 3445556666667778888888888888777777777654443
No 3
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=36.54 E-value=13 Score=32.03 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=32.7
Q ss_pred ccceeeecccCCChHHHHHHHh-h------hheeECCccHHHHHHHHH
Q 027491 114 KRGVFYASLFGVGAPEALVIGV-V------ALLVFGPKGLAEVARNLG 154 (222)
Q Consensus 114 ~~~~~~~~MFgIG~~ELLVIlV-V------ALLVfGPkKLPelaR~lG 154 (222)
.+.++|..|.|+...+.+=-+- . .|||+|.+|.|.-.-.++
T Consensus 74 gG~VVHLTMYG~~i~dvi~eIr~~~~~~~~iLVVVGaeKVP~evYelA 121 (201)
T 2yy8_A 74 TGVKVHLTMYGLHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYELA 121 (201)
T ss_dssp CSEEEEEEEEEEEHHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHC
T ss_pred CCEEEEEecCCCchHHHHHHHHhhcccCCCEEEEECCCcCCHHHHhhc
Confidence 7889999999999988764443 1 789999999997665554
No 4
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=28.09 E-value=31 Score=24.55 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=24.6
Q ss_pred HhhhheeEC---CccHHHHHHHHHHHHHHHHHHHHHH
Q 027491 134 GVVALLVFG---PKGLAEVARNLGKTLRAFQPTIREL 167 (222)
Q Consensus 134 lVVALLVfG---PkKLPelaR~lGK~iR~fR~~~~el 167 (222)
+.=||..|+ |+|.-.+|+.+||...++++-...+
T Consensus 19 fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L 55 (72)
T 2cqq_A 19 LTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQL 55 (72)
T ss_dssp HHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 334455677 7899999999998887777655433
No 5
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=24.13 E-value=24 Score=29.95 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=28.5
Q ss_pred hhccccceeeecccCCChHHHHHHHh---hhheeECCccHHHHHHHH
Q 027491 110 KRRCKRGVFYASLFGVGAPEALVIGV---VALLVFGPKGLAEVARNL 153 (222)
Q Consensus 110 ~~~~~~~~~~~~MFgIG~~ELLVIlV---VALLVfGPkKLPelaR~l 153 (222)
|.| .+.++|..|.|+...+.+=-+- =.|+|+|.+|.|.-.-.+
T Consensus 72 ~~w-~G~VVHLTMYG~~i~dvi~~Ir~~~~iLvVVGaeKVP~evYel 117 (178)
T 2o3a_A 72 REF-DGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGAEKVPPEVYEL 117 (178)
T ss_dssp HHC-CSEEEEEEEEEEEHHHHHHHHHTCSEEEEEEC----CTTHHHH
T ss_pred HHc-CCEEEEEecCCCchHHHHHHhhcCCCEEEEECCCcCCHHHHhh
Confidence 344 7889999999999987654332 368999999999755544
No 6
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=22.48 E-value=75 Score=22.66 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=30.1
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~ 165 (222)
-+|++..|+.++.++. -||-..-++++.+|-.-..+.+.++
T Consensus 32 ~~~l~~~~~~iL~~l~---~~~~~~~ela~~l~~s~~tvs~~l~ 72 (146)
T 2gxg_A 32 ELNLSYLDFLVLRATS---DGPKTMAYLANRYFVTQSAITASVD 72 (146)
T ss_dssp TTTCCHHHHHHHHHHT---TSCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHh---cCCcCHHHHHHHhCCCchhHHHHHH
Confidence 4689999999888876 7888999999988755444444333
No 7
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=17.94 E-value=1.1e+02 Score=25.54 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=27.9
Q ss_pred HhhhheeECCccHHHHHHHHHHHHHHHHHHHHHH
Q 027491 134 GVVALLVFGPKGLAEVARNLGKTLRAFQPTIREL 167 (222)
Q Consensus 134 lVVALLVfGPkKLPelaR~lGK~iR~fR~~~~el 167 (222)
+.-++=.+|-+++|++.+..-+.+.+-+..+...
T Consensus 81 ~akalr~wG~~~l~kli~kA~klY~~~~~~ie~e 114 (166)
T 3vjz_A 81 LADSLRRWKIKAVPKVLDKAKALYEQHGKTIETL 114 (166)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHHhhhHHHHH
Confidence 4567778999999999999999998888666543
No 8
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=16.94 E-value=2.7e+02 Score=19.54 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 027491 151 RNLGKTLRAFQPTIRELQDVSREFKSTLERE 181 (222)
Q Consensus 151 R~lGK~iR~fR~~~~elkd~s~Efk~elerE 181 (222)
+++--.+..+|+.+.+++...+..+..+++|
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~lEeE 36 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSLEEE 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777777777776666666666654
No 9
>1gp7_A Phospholipase A2; snake venom, KING cobra, cardiotoxic activity, myotoxic activity, pancreatic loop, hydrolase, lipid degradation, calcium; 2.6A {Ophiophagus hannah} SCOP: a.133.1.2
Probab=16.46 E-value=43 Score=26.93 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=5.1
Q ss_pred hHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHH
Q 027491 127 APEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQ 161 (222)
Q Consensus 127 ~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR 161 (222)
+..|||+++|.+.++|...+|..-|.+-++-.-++
T Consensus 3 ~~~ll~~~~v~v~ll~~~~~~~~~~~l~qf~~MI~ 37 (151)
T 1gp7_A 3 PAHLLVLSAVCVSLLGASSIPPQPLHLIQFGNMIQ 37 (151)
T ss_dssp -------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHH
Confidence 46788888999999998888888776655544433
No 10
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=14.01 E-value=1e+02 Score=22.85 Aligned_cols=44 Identities=27% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHhhhheeEC---CccHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHH
Q 027491 133 IGVVALLVFG---PKGLAEVARNL-GKTLRAFQPTIRELQDVSREFKS 176 (222)
Q Consensus 133 IlVVALLVfG---PkKLPelaR~l-GK~iR~fR~~~~elkd~s~Efk~ 176 (222)
++.-+|..+| |.+.-.+|+.+ ||...+.|+-...+.+....++.
T Consensus 18 ~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ies 65 (93)
T 2cjj_A 18 AFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65 (93)
T ss_dssp HHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc
Done!