Query 027491
Match_columns 222
No_of_seqs 171 out of 1202
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 18:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027491.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027491hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pila_ d.24.1.1 (A:) Pilin Gc 30.9 42 0.003 22.3 5.1 30 126-156 2-31 (158)
2 d1rp3a1 a.4.13.1 (A:87-163) Si 21.3 24 0.0018 22.7 2.2 19 169-187 14-32 (77)
3 d1l0oc_ a.4.13.2 (C:) SigmaF { 20.5 28 0.002 21.8 2.3 20 172-191 22-41 (57)
4 d2o3aa1 c.116.1.8 (A:1-167) Un 16.2 19 0.0014 28.3 0.7 40 114-153 73-115 (167)
5 d1twfk_ d.74.3.2 (K:) RPB11 {B 13.1 93 0.0067 21.8 3.9 27 160-186 87-113 (114)
6 d2a61a1 a.4.5.28 (A:5-143) Tra 9.3 1.4E+02 0.01 20.2 3.6 38 123-162 26-63 (139)
7 d1lnwa_ a.4.5.28 (A:) MexR rep 8.9 1.4E+02 0.011 20.2 3.6 42 122-165 31-72 (141)
8 d1sfxa_ a.4.5.50 (A:) Hypothet 8.8 1.9E+02 0.014 19.0 4.2 42 123-166 16-57 (109)
9 d1ku2a1 a.4.13.1 (A:273-332) S 7.8 95 0.0069 19.5 1.9 20 172-191 19-38 (60)
10 d1zj8a4 d.134.1.1 (A:162-326) 6.7 4E+02 0.029 19.0 5.5 23 138-160 97-119 (165)
No 1
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=30.94 E-value=42 Score=22.27 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=19.2
Q ss_pred ChHHHHHHHhhhheeECCccHHHHHHHHHHH
Q 027491 126 GAPEALVIGVVALLVFGPKGLAEVARNLGKT 156 (222)
Q Consensus 126 G~~ELLVIlVVALLVfGPkKLPelaR~lGK~ 156 (222)
..-||+|+++|+-|+-+ =-+|.+.+..-+.
T Consensus 2 TLIELlVViaIIgILaa-ia~P~~~~~~~~a 31 (158)
T d2pila_ 2 TLIELMIVIAIVGILAA-VALPAYQDYTARA 31 (158)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 35688887777665554 2378877765543
No 2
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=21.26 E-value=24 Score=22.73 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=7.5
Q ss_pred HhHHHHHHHHHHhhCcccc
Q 027491 169 DVSREFKSTLEREIGLDDI 187 (222)
Q Consensus 169 d~s~Efk~elerEi~ldeI 187 (222)
+...++.+++.++...+||
T Consensus 14 ~a~~~L~~~lGR~Pt~~Ei 32 (77)
T d1rp3a1 14 EVVEKLKEKLGREPTDEEV 32 (77)
T ss_dssp HHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHCcCCCHHHH
Confidence 3333444444443333333
No 3
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.46 E-value=28 Score=21.79 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhCccccchhh
Q 027491 172 REFKSTLEREIGLDDISTST 191 (222)
Q Consensus 172 ~Efk~elerEi~ldeIrk~~ 191 (222)
+++.+++.++-..+||.+.+
T Consensus 22 ~~l~q~lgRePT~~EiA~~l 41 (57)
T d1l0oc_ 22 DELSKTRGRAPTVTEIADHL 41 (57)
T ss_dssp HHHHHHHTSCCBHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHH
Confidence 34555666655555555443
No 4
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=16.20 E-value=19 Score=28.32 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=26.2
Q ss_pred ccceeeecccCCChHHHHHHHhh---hheeECCccHHHHHHHH
Q 027491 114 KRGVFYASLFGVGAPEALVIGVV---ALLVFGPKGLAEVARNL 153 (222)
Q Consensus 114 ~~~~~~~~MFgIG~~ELLVIlVV---ALLVfGPkKLPelaR~l 153 (222)
.+.++|..|.|+.+.|.+==+=- .|+|+|.+|.|.=.=.+
T Consensus 73 ~G~vVHLTMYG~~~~~~~~~Ir~~~~ilvVVGaeKVP~evyel 115 (167)
T d2o3aa1 73 DGLKVHLTMYGIPLPQKLEEIKRADKVLVVVGAEKVPPEVYEL 115 (167)
T ss_dssp CSEEEEEEEEEEEHHHHHHHHHTCSEEEEEEC----CTTHHHH
T ss_pred CCEEEEeecCCCchHHHhhhcccCCCEEEEECCccCCHHHHhh
Confidence 68999999999999985433211 68999999999654433
No 5
>d1twfk_ d.74.3.2 (K:) RPB11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.13 E-value=93 Score=21.75 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhCccc
Q 027491 160 FQPTIRELQDVSREFKSTLEREIGLDD 186 (222)
Q Consensus 160 fR~~~~elkd~s~Efk~elerEi~lde 186 (222)
++++.+++.+..+.+++++++|.++..
T Consensus 87 l~~a~~~l~~~~~~l~~~f~~e~~~~~ 113 (114)
T d1twfk_ 87 LKNACNSIINKLGALKTNFETEWNLQT 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344444444555566666666666554
No 6
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=9.26 E-value=1.4e+02 Score=20.17 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=29.1
Q ss_pred cCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHH
Q 027491 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQP 162 (222)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~ 162 (222)
+|++..|+.++..|.- -||-..-++++.+|-.-..+-+
T Consensus 26 ~glt~~q~~iL~~i~~--~~~~t~~~la~~l~i~~~tvs~ 63 (139)
T d2a61a1 26 FGITPAQFDILQKIYF--EGPKRPGELSVLLGVAKSTVTG 63 (139)
T ss_dssp HTCCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--cCCCCHHHHHHHhCCCcccchH
Confidence 4899999999988864 6888999999988655444333
No 7
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.86 E-value=1.4e+02 Score=20.21 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=29.2
Q ss_pred ccCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHH
Q 027491 122 LFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIR 165 (222)
Q Consensus 122 MFgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~ 165 (222)
=+||++.|+-++.+|.- .++-...++++.++..-..+.+.++
T Consensus 31 ~~~lt~~q~~vL~~l~~--~~~~t~~~la~~l~~~~~~vsr~l~ 72 (141)
T d1lnwa_ 31 RLDLTPPDVHVLKLIDE--QRGLNLQDLGRQMCRDKALITRKIR 72 (141)
T ss_dssp TCCCCHHHHHHHHHHHS--STTCBHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH--CCCCCHHHHHHHHCccHhHHHHHHH
Confidence 36899999999988863 6666888888877654444443333
No 8
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=8.82 E-value=1.9e+02 Score=19.00 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=31.9
Q ss_pred cCCChHHHHHHHhhhheeECCccHHHHHHHHHHHHHHHHHHHHH
Q 027491 123 FGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRAFQPTIRE 166 (222)
Q Consensus 123 FgIG~~ELLVIlVVALLVfGPkKLPelaR~lGK~iR~fR~~~~e 166 (222)
||++..|+-|...+. --||-..-++++.+|-.-..+.+.++.
T Consensus 16 lGlt~~e~~v~~~L~--~~g~~t~~eia~~~~i~~~~v~~~l~~ 57 (109)
T d1sfxa_ 16 LSFKPSDVRIYSLLL--ERGGMRVSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp TCCCHHHHHHHHHHH--HHCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--hcCCCCHHHHHHHhCCCcchHHHHHHH
Confidence 899999988877664 569999999999997665555554443
No 9
>d1ku2a1 a.4.13.1 (A:273-332) Sigma factor SigA {Thermus aquaticus [TaxId: 271]}
Probab=7.75 E-value=95 Score=19.49 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhCccccchhh
Q 027491 172 REFKSTLEREIGLDDISTST 191 (222)
Q Consensus 172 ~Efk~elerEi~ldeIrk~~ 191 (222)
+++.++++++-..+|+.+.+
T Consensus 19 ~~l~qe~gRePt~eEiA~~l 38 (60)
T d1ku2a1 19 RQLQQELGREPSYEEIAEAM 38 (60)
T ss_dssp HHHHHHHTSCCCHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHH
Confidence 34445555555555555443
No 10
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.69 E-value=4e+02 Score=19.03 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=19.9
Q ss_pred heeECCccHHHHHHHHHHHHHHH
Q 027491 138 LLVFGPKGLAEVARNLGKTLRAF 160 (222)
Q Consensus 138 LLVfGPkKLPelaR~lGK~iR~f 160 (222)
..++-|++++++++.+-+.++++
T Consensus 97 ~~~v~~e~v~~~v~ai~~~y~~~ 119 (165)
T d1zj8a4 97 GAWVPLGEVPEVWAAVTSVFRDY 119 (165)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999999865
Done!