Query 027493
Match_columns 222
No_of_seqs 157 out of 686
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 18:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027493.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027493hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2imja1 d.17.4.23 (A:5-159) Hy 11.5 20 0.0015 27.2 -0.4 17 76-92 12-28 (155)
2 d1ei5a1 b.61.3.1 (A:336-417) D 11.0 26 0.0019 23.7 0.1 12 182-193 8-19 (82)
3 d2o35a1 a.293.1.1 (A:2-80) Hyp 5.3 1.3E+02 0.0096 20.0 1.6 25 74-98 14-41 (79)
4 d1t5ja_ a.209.1.1 (A:) Hypothe 5.1 2.4E+02 0.018 21.2 3.5 30 77-106 242-272 (301)
5 d2ffta1 g.88.1.1 (A:2-84) Thyl 4.4 2.6E+02 0.019 18.5 2.6 12 182-193 71-82 (83)
6 d1jb0j_ f.23.18.1 (J:) Subunit 4.2 3.8E+02 0.028 15.4 4.3 28 117-144 13-40 (41)
7 d2oo2a1 a.8.11.1 (A:1-75) Hypo 3.6 2E+02 0.015 18.7 1.6 14 82-95 42-55 (75)
8 d1q90r_ f.23.12.1 (R:) ISP sub 3.5 96 0.007 18.1 -0.2 14 4-17 5-18 (39)
9 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 3.0 3.1E+02 0.022 17.4 1.9 24 36-59 6-30 (75)
10 d2e74d2 f.23.12.1 (D:12-45) IS 2.8 1.3E+02 0.0094 16.8 -0.2 13 24-36 16-28 (34)
No 1
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=11.49 E-value=20 Score=27.20 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=14.9
Q ss_pred HHHHHHHhhccCChhHH
Q 027493 76 FDCTMVYLRQKEDPWNS 92 (222)
Q Consensus 76 ~ec~l~~~R~KdD~~Ns 92 (222)
.|.+++++|-.+|.||+
T Consensus 12 ~etA~~KVr~AEdaWNs 28 (155)
T d2imja1 12 RESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 47888999999999997
No 2
>d1ei5a1 b.61.3.1 (A:336-417) D-aminopeptidase, middle and C-terminal domains {Ochrobactrum anthropi [TaxId: 529]}
Probab=11.05 E-value=26 Score=23.75 Aligned_cols=12 Identities=33% Similarity=1.082 Sum_probs=9.0
Q ss_pred CCCccccccCCC
Q 027493 182 SSSWFGGFFGGK 193 (222)
Q Consensus 182 ~~~~~~~~f~~~ 193 (222)
+.+|||+|....
T Consensus 8 ~~~WfGsWLd~E 19 (82)
T d1ei5a1 8 DSAWFGSWLDDE 19 (82)
T ss_dssp CGGGCEEEECTT
T ss_pred CcchhhcccCCC
Confidence 467999998543
No 3
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=5.33 E-value=1.3e+02 Score=20.03 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhccCChhHHH---HHHHH
Q 027493 74 STFDCTMVYLRQKEDPWNSI---IAGAA 98 (222)
Q Consensus 74 s~~ec~l~~~R~KdD~~Nsi---iAG~~ 98 (222)
+.|+-+++++|.+.|.-|== +|||+
T Consensus 14 aaFrrL~~HL~~r~dVQNIDLMnLaGFC 41 (79)
T d2o35a1 14 AVFRRLLEHLRERSDVQNIDLMNLAGFC 41 (79)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 56789999999999988743 46655
No 4
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.13 E-value=2.4e+02 Score=21.18 Aligned_cols=30 Identities=13% Similarity=0.286 Sum_probs=14.8
Q ss_pred HHHHHHhhccCCh-hHHHHHHHHHHHHhhhc
Q 027493 77 DCTMVYLRQKEDP-WNSIIAGAATGGFLSMR 106 (222)
Q Consensus 77 ec~l~~~R~KdD~-~NsiiAG~~TGall~~r 106 (222)
+.+...++--.|- -|+.++|++.|+.++..
T Consensus 242 ~ai~~av~~GgDtdt~aai~Gal~GA~~G~~ 272 (301)
T d1t5ja_ 242 EGMLKCINAGGDTDSLASMYGAMAGAYYGFK 272 (301)
T ss_dssp HHHHHHHTSCBSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhChh
Confidence 3444444443332 35555666666665543
No 5
>d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=4.36 E-value=2.6e+02 Score=18.52 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=9.4
Q ss_pred CCCccccccCCC
Q 027493 182 SSSWFGGFFGGK 193 (222)
Q Consensus 182 ~~~~~~~~f~~~ 193 (222)
+++=|||||-+|
T Consensus 71 ~~~gfgglfakk 82 (83)
T d2ffta1 71 NGGVFGGLFAKK 82 (83)
T ss_dssp SCCSSSSSSCCC
T ss_pred CCCcccceeecC
Confidence 456899999765
No 6
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=4.19 E-value=3.8e+02 Score=15.44 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 027493 117 LFGGVLLALIEGAGIMLNKVLSAPQNMP 144 (222)
Q Consensus 117 l~Gg~~~aliegag~~~~r~~~~~~~~~ 144 (222)
++..+-+.+..|.-|=+||++-+....|
T Consensus 13 Vla~~w~~~tAG~lIEiNRFfPD~L~~P 40 (41)
T d1jb0j_ 13 VLAAIWMTITAGILIEFNRFYPDLLFHP 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhCchhhcCC
Confidence 3444555666666677999987765544
No 7
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.62 E-value=2e+02 Score=18.73 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=10.5
Q ss_pred HhhccCChhHHHHH
Q 027493 82 YLRQKEDPWNSIIA 95 (222)
Q Consensus 82 ~~R~KdD~~NsiiA 95 (222)
++..|.|..|++.+
T Consensus 42 ~fl~~gD~v~A~~~ 55 (75)
T d2oo2a1 42 YFLEKGDLVRAFEC 55 (75)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHH
Confidence 44558999998864
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.54 E-value=96 Score=18.12 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=7.7
Q ss_pred CCCCCCCCchhHHh
Q 027493 4 PETSREPCPDRILD 17 (222)
Q Consensus 4 ~~~~repcp~ri~d 17 (222)
||+.||.....++.
T Consensus 5 pDMgrR~~MNLll~ 18 (39)
T d1q90r_ 5 PDMNKRNIMNLILA 18 (39)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHH
Confidence 56666655555543
No 9
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=2.96 E-value=3.1e+02 Score=17.43 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=12.2
Q ss_pred HHhhccCCCCC-ccccHHHHHhhcc
Q 027493 36 LKGTYNSPSGA-RLSGGTQAVRMNA 59 (222)
Q Consensus 36 ~~G~~nsP~g~-rl~g~l~avr~~g 59 (222)
..++.++|.+. .+..+-+.+..+-
T Consensus 6 ~~Ai~~sp~~~ltL~eIy~~i~~~f 30 (75)
T d1kq8a_ 6 TMAIRDSAGGRLTLAEINEYLMGKF 30 (75)
T ss_dssp HHHHTTSSSSCBCHHHHHHHHHHHC
T ss_pred HHHHHhCCCCCccHHHHHHHHHHhC
Confidence 45677777653 3444444444333
No 10
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.82 E-value=1.3e+02 Score=16.84 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 027493 24 GMGAVGGAAFHFL 36 (222)
Q Consensus 24 ~mG~v~G~~~g~~ 36 (222)
..|...|+++-++
T Consensus 16 ~tg~alg~lypvv 28 (34)
T d2e74d2 16 VTGVALGALYPLV 28 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHH
Confidence 3444455544443
Done!