BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027494
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DUN|A Chain A, 1.76a X-Ray Crystal Structure Of A Putative Phenazine
Biosynthesis PhzcPHZF PROTEIN FROM CLOSTRIDIUM DIFFICILE
(STRAIN 630)
Length = 263
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 29/222 (13%)
Query: 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
++LCGHA LAAA+ + + VN I+F T SG L ++NG E
Sbjct: 69 IDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKL-------------EVTRNGNLYEMI 115
Query: 61 FIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKF 120
F E+ P E+ L + + V + ++ D+ ++L S + V + +P +
Sbjct: 116 FPEI-MPI---------EIELSPQQANLIGCVPSDVYSS-RDLILLLNSEQEVINYKPNY 164
Query: 121 DEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGK 180
+++K GII++ S DF SR+FCP+ +EDPV GS++C L YWS+KLGK
Sbjct: 165 AQLRKLTDWLGIIITAQG---SNTDFVSRYFCPELD-SEDPVTGSSHCNLIPYWSEKLGK 220
Query: 181 CDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
VA S R GI+ + + N V++ G+A+ MQG++ +
Sbjct: 221 HKMVAAQLSNRGGIIQCEVLKDNT-VKISGEAVLFMQGTIKI 261
>pdb|1S7J|A Chain A, Crystal Structure Of Phenazine Biosynthesis Protein Phzf
Family (Enterococcus Faecalis)
pdb|1S7J|B Chain B, Crystal Structure Of Phenazine Biosynthesis Protein Phzf
Family (Enterococcus Faecalis)
Length = 262
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/218 (32%), Positives = 96/218 (44%), Gaps = 29/218 (13%)
Query: 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
++LCGHA LA A LF+ V T+ FT+ SG L K +E Y
Sbjct: 68 IDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTK----------------KEEYY 111
Query: 61 FIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKF 120
+ LDFP + E IL + + D+F VL ++V + P F
Sbjct: 112 Y--LDFP------YILPERIPILPEYEAALGTKIYEAYLGRDLFFVLKDEETVAKITPDF 163
Query: 121 DEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGK 180
+K G+IV+ DF SR F PK +NEDPVCGSA+ L YW ++L +
Sbjct: 164 SALKALDLGVGVIVTASG---DSVDFVSRTFFPKLRINEDPVCGSAHANLIPYWGKRLNQ 220
Query: 181 CDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQG 218
AY SPR G L + E RV + G A +G
Sbjct: 221 TTLSAYQVSPRGGFLTCEVKE--NRVIIGGTAKLFAKG 256
>pdb|1U1W|A Chain A, Structure And Function Of Phenazine-biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1U1W|B Chain B, Structure And Function Of Phenazine-biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1U1X|A Chain A, Structure And Function Of Phenazine-Biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1U1X|B Chain B, Structure And Function Of Phenazine-Biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
pdb|1XUA|A Chain A, Structure And Function Of The Phenazine Biosynthetic
Protein Phzf From Pseudomonas Fluorescens
pdb|1XUA|B Chain B, Structure And Function Of The Phenazine Biosynthetic
Protein Phzf From Pseudomonas Fluorescens
Length = 298
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 31/159 (19%)
Query: 82 ILEALGVS-SVVDMKITTTC-EDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAP 139
+L+ALG+S S ++I +FV LPS +++ L P + + ++ A
Sbjct: 153 LLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNF---HDMAINCFA- 208
Query: 140 PESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQ----------------KLGKCDF 183
+G + SR F P +GV ED GSA LA + ++ ++G+
Sbjct: 209 -GAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSL 267
Query: 184 VAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
+ A R+ EQ RV++ G +T +G++++
Sbjct: 268 MFAKAEGRA--------EQLTRVEVSGNGVTFGRGTIVL 298
>pdb|1T6K|A Chain A, Crystal Structure Of Phzf From Pseudomonas Fluorescens
2-79
Length = 278
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 31/159 (19%)
Query: 82 ILEALGVS-SVVDMKITTTC-EDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAP 139
+L+ALG+S S ++I +FV LPS +++ L P + +G
Sbjct: 133 LLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAG--- 189
Query: 140 PESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQ----------------KLGKCDF 183
+G + SR F P +GV ED GSA LA + ++ ++G+
Sbjct: 190 --AGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSL 247
Query: 184 VAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
+ A R+ EQ RV++ G +T +G++++
Sbjct: 248 MFAKAEGRA--------EQLTRVEVSGNGVTFGRGTIVL 278
>pdb|1XUB|A Chain A, Structure And Function Of The Phenazine Biosynthetic
Protein Phzf From Pseudomonas Fluorescens
Length = 298
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 31/159 (19%)
Query: 82 ILEALGVS-SVVDMKITTTC-EDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAP 139
+L+ALG+S S ++I +FV LPS +++ L P + +G
Sbjct: 153 LLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAG--- 209
Query: 140 PESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQ----------------KLGKCDF 183
+G + SR F P +GV ED GSA LA + ++ ++G+
Sbjct: 210 --AGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSL 267
Query: 184 VAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
+ A R+ EQ RV++ G +T +G++++
Sbjct: 268 MFAKAEGRA--------EQLTRVEVSGNGVTFGRGTIVL 298
>pdb|1U1V|A Chain A, Structure And Function Of Phenazine-Biosynthesis Protein
Phzf From Pseudomonas Fluorescens 2-79
Length = 298
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 25/156 (16%)
Query: 82 ILEALGVS-SVVDMKITTTC-EDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAP 139
+L+ALG+S S ++I +FV LPS +++ L P + +G
Sbjct: 153 LLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDXAINCFAG--- 209
Query: 140 PESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHL 199
+G + SR F P +GV ED GSA LA + ++ G+ +F P + + +
Sbjct: 210 --AGRRWRSRXFSPAYGVVEDAATGSAAGPLAIHLARH-GQIEF----GQPVEILQGVEI 262
Query: 200 D-------------EQNQRVQLRGKAITVMQGSLLV 222
EQ RV++ G +T +G++++
Sbjct: 263 GRPSLXFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL 298
>pdb|1YM5|A Chain A, Crystal Structure Of Yhi9, The Yeast Member Of The
Phenazine Biosynthesis Phzf Enzyme Superfamily
Length = 300
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 131 GIIVSGLAPPESGFDFYS-RFFCPKFGVNEDPVCGSAYCALATYWSQ--KLGKCDFVAYA 187
GII++G + + Y R F P V EDPVCGS ALA Y + K K + +
Sbjct: 194 GIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVALARYLQEVYKFEKTTDITIS 253
Query: 188 AS---PRSGILNIHLDEQ---NQRVQLRGKAITVMQGSLLV 222
R+G++ + ++ + + G A TV+ G + V
Sbjct: 254 EGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 294
>pdb|1QYA|A Chain A, Crystal Structure Of E. Coli Protein Ydde
pdb|1QYA|B Chain B, Crystal Structure Of E. Coli Protein Ydde
Length = 307
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 3 LCGHAALAAAHTLFSRGLVNSN-TIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYF 61
+CGHA +AA H + ++ L N TI T+L+G K ++ ND + E F
Sbjct: 81 ICGHATVAA-HYVRAKVLGLGNCTIWQTSLAG----KHRVTIEKHNDDYRISLEQGTPGF 135
Query: 62 ---IELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQP 118
+E + AA + +E IL L + TT + + L + L P
Sbjct: 136 EPPLEGETRAAIINALHLTEDD-ILPGLPIQVA-----TTGHSKVMIPLKPEVDIDALSP 189
Query: 119 KFDEM---KKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATY 173
+ + K G G + P ++ D R F P G+ EDPV G+A + +
Sbjct: 190 DLNALTAISKKIGCNGFFPFQIRPGKNETD--GRMFSPAIGIVEDPVTGNANGPMGAW 245
>pdb|1SDJ|A Chain A, X-Ray Structure Of Ydde_ecoli Northeast Structural
Genomics Consortium Target Et25
Length = 310
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 20/171 (11%)
Query: 3 LCGHAALAAAHTLFSRGLVNSN-TIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYF 61
+CGHA +AA H + ++ L N TI T+L+G K ++ ND + E F
Sbjct: 82 ICGHATVAA-HYVRAKVLGLGNCTIWQTSLAG----KHRVTIEKHNDDYRISLEQGTPGF 136
Query: 62 ---IELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQP 118
+E + AA + +E IL L + TT + + L + L P
Sbjct: 137 EPPLEGETRAAIINALHLTEDD-ILPGLPIQVA-----TTGHSKVXIPLKPEVDIDALSP 190
Query: 119 KFDEM---KKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSA 166
+ + K G G + P ++ D R F P G+ EDPV G+A
Sbjct: 191 DLNALTAISKKIGCNGFFPFQIRPGKNETD--GRXFSPAIGIVEDPVTGNA 239
>pdb|1QY9|A Chain A, Crystal Structure Of E. Coli Se-met Protein Ydde
pdb|1QY9|B Chain B, Crystal Structure Of E. Coli Se-met Protein Ydde
pdb|1QY9|C Chain C, Crystal Structure Of E. Coli Se-met Protein Ydde
pdb|1QY9|D Chain D, Crystal Structure Of E. Coli Se-met Protein Ydde
Length = 297
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 20/171 (11%)
Query: 3 LCGHAALAAAHTLFSRGLVNSN-TIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYF 61
+CGHA +AA H + ++ L N TI T+L+G K ++ ND + E F
Sbjct: 71 ICGHATVAA-HYVRAKVLGLGNCTIWQTSLAG----KHRVTIEKHNDDYRISLEQGTPGF 125
Query: 62 ---IELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQP 118
+E + AA + +E IL L + TT + + L + L P
Sbjct: 126 EPPLEGETRAAIINALHLTEDD-ILPGLPIQVA-----TTGHSKVXIPLKPEVDIDALSP 179
Query: 119 KFDEM---KKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSA 166
+ + K G G + P ++ D R F P G+ EDPV G+A
Sbjct: 180 DLNALTAISKKIGCNGFFPFQIRPGKNETD--GRXFSPAIGIVEDPVTGNA 228
>pdb|4DU6|A Chain A, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|B Chain B, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|C Chain C, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|D Chain D, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
pdb|4DU6|E Chain E, Crystal Structure Of Gtp Cyclohydrolase I From Yersinia
Pestis Complexed With Gtp
Length = 223
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 75 NFSEVSLILEALGVSSVV---DMKITTTCEDIFVVLPSAKSV 113
NF +++LI + V +V D+ +T+TCE FV + +V
Sbjct: 84 NFPKITLIQNKMKVDEMVTVRDITLTSTCEHHFVTIDGKATV 125
>pdb|1N3T|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3T|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 75 NFSEVSLILEALGVSSVV---DMKITTTCEDIFVVLPSAKSV 113
NF +++LI + V +V D+ +T+TCE FV + +V
Sbjct: 82 NFPKITLIENKMKVDEMVTVRDITLTSTCEHHFVTIDGKATV 123
>pdb|1GTP|A Chain A, Gtp Cyclohydrolase I
pdb|1GTP|B Chain B, Gtp Cyclohydrolase I
pdb|1GTP|C Chain C, Gtp Cyclohydrolase I
pdb|1GTP|D Chain D, Gtp Cyclohydrolase I
pdb|1GTP|E Chain E, Gtp Cyclohydrolase I
pdb|1GTP|F Chain F, Gtp Cyclohydrolase I
pdb|1GTP|G Chain G, Gtp Cyclohydrolase I
pdb|1GTP|H Chain H, Gtp Cyclohydrolase I
pdb|1GTP|I Chain I, Gtp Cyclohydrolase I
pdb|1GTP|J Chain J, Gtp Cyclohydrolase I
pdb|1GTP|K Chain K, Gtp Cyclohydrolase I
pdb|1GTP|L Chain L, Gtp Cyclohydrolase I
pdb|1GTP|M Chain M, Gtp Cyclohydrolase I
pdb|1GTP|N Chain N, Gtp Cyclohydrolase I
pdb|1GTP|O Chain O, Gtp Cyclohydrolase I
pdb|1GTP|P Chain P, Gtp Cyclohydrolase I
pdb|1GTP|Q Chain Q, Gtp Cyclohydrolase I
pdb|1GTP|R Chain R, Gtp Cyclohydrolase I
pdb|1GTP|S Chain S, Gtp Cyclohydrolase I
pdb|1GTP|T Chain T, Gtp Cyclohydrolase I
pdb|1FBX|A Chain A, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|B Chain B, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|C Chain C, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|D Chain D, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|E Chain E, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|F Chain F, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|G Chain G, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|H Chain H, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|I Chain I, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|J Chain J, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|K Chain K, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|L Chain L, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|M Chain M, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|N Chain N, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
pdb|1FBX|O Chain O, Crystal Structure Of Zinc-Containing E.Coli Gtp
Cyclohydrolase I
Length = 221
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 75 NFSEVSLILEALGVSSVV---DMKITTTCEDIFVVLPSAKSV 113
NF +++LI + V +V D+ +T+TCE FV + +V
Sbjct: 82 NFPKITLIENKMKVDEMVTVRDITLTSTCEHHFVTIDGKATV 123
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 24 NTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYF 61
N EFT L I KK+P ++ +N SN++ + +E F
Sbjct: 40 NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF 77
>pdb|1N3S|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3S|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 75 NFSEVSLILEALGVSSVV---DMKITTTCEDIFVVLPSAKSV 113
NF +++LI + V +V D+ +T+TCE FV + +V
Sbjct: 82 NFPKITLIENKMKVDEMVTVRDITLTSTCEHSFVTIDGKATV 123
>pdb|1A8R|A Chain A, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|B Chain B, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|C Chain C, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|D Chain D, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|E Chain E, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|F Chain F, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|G Chain G, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|H Chain H, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|I Chain I, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|J Chain J, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|K Chain K, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|L Chain L, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|M Chain M, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|N Chain N, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1A8R|O Chain O, Gtp Cyclohydrolase I (H112s Mutant) In Complex With Gtp
pdb|1N3R|A Chain A, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|B Chain B, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|C Chain C, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|D Chain D, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|E Chain E, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|F Chain F, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|G Chain G, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|H Chain H, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|I Chain I, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|J Chain J, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|K Chain K, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|L Chain L, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|M Chain M, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|N Chain N, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
pdb|1N3R|O Chain O, Biosynthesis Of Pteridins. Reaction Mechanism Of Gtp
Cyclohydrolase I
Length = 221
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 75 NFSEVSLILEALGVSSVV---DMKITTTCEDIFVVLPSAKSV 113
NF +++LI + V +V D+ +T+TCE FV + +V
Sbjct: 82 NFPKITLIENKMKVDEMVTVRDITLTSTCESHFVTIDGKATV 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,287,370
Number of Sequences: 62578
Number of extensions: 246075
Number of successful extensions: 530
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 16
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)