BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027494
(222 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9KG32|Y283_BACHD Uncharacterized isomerase BH0283 OS=Bacillus halodurans (strain
ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=BH0283 PE=3 SV=1
Length = 265
Score = 130 bits (327), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 27/223 (12%)
Query: 1 MELCGHAALAAAHTLFSRGLVNSNT-IEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQEC 59
++LCGHA LA+AH L+ +++ I F T SGIL A S+ GE
Sbjct: 69 VDLCGHATLASAHILWELDHISAEQPITFYTKSGILTA-------------SKRGE---- 111
Query: 60 YFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPK 119
+IELDFP+ N LI + LG+ + + D + + S + + +L P
Sbjct: 112 -WIELDFPSEQPKQENVYPNELI-DGLGIQP---LYVGRNRFDYLIEIDSEQRLKELNPN 166
Query: 120 FDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLG 179
F +++ TRGIIV+ + + +DF SR F P GVNEDPV GSA+C L YW +KL
Sbjct: 167 FSLLEQI-DTRGIIVTSKST-STEYDFISRCFFPAVGVNEDPVTGSAHCCLGPYWQEKLN 224
Query: 180 KCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
K +F+AY AS R G+L I L Q+ RV L G+A+TV++ LL+
Sbjct: 225 KNEFLAYQASKRGGMLKIKL--QHDRVFLLGQAVTVLRSELLL 265
>sp|Q9DCG6|PBLD1_MOUSE Phenazine biosynthesis-like domain-containing protein 1 OS=Mus
musculus GN=Pbld1 PE=2 SV=2
Length = 288
Score = 122 bits (305), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 121/231 (52%), Gaps = 35/231 (15%)
Query: 3 LCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFI 62
LCGHA LA+A LF + ++T+ F T+SG L A++ D I
Sbjct: 78 LCGHATLASAAVLFHKIQNRNSTLTFVTMSGELKARRAEDG------------------I 119
Query: 63 ELDFPAAPTADFNFSEVS-LILEALGVSSVVDMKITTTCEDIFV---------VLPSAKS 112
LDFP PT +F EV LI A+G + V D++ +T + V L S K
Sbjct: 120 VLDFPVYPTFPQDFHEVEDLIKAAIGDTLVQDIRYSTDTRKLLVRLSDSYDRSFLESLKV 179
Query: 113 VTDLQPKFDEMKKCPGTRGIIVSGLAPP---ESGFDFYSRFFCPKFGVNEDPVCGSAYCA 169
T+ P ++ K RG+I++ P + +DFYSR+F P G+ EDPV GSA+
Sbjct: 180 NTEPLPAIEKTGKV---RGLILTVKGEPGGQTAPYDFYSRYFAPWVGIAEDPVTGSAHTV 236
Query: 170 LATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSL 220
L++YWSQ+L K + A+ S R G L+I L + RV ++G A+ V++G+L
Sbjct: 237 LSSYWSQQLRKKEMRAFQCSRRGGELDISL-RPDGRVDIKGGAVIVLEGTL 286
>sp|Q68G31|PBLD_RAT Phenazine biosynthesis-like domain-containing protein OS=Rattus
norvegicus GN=Pbld PE=2 SV=1
Length = 288
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 33/230 (14%)
Query: 3 LCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFI 62
LCGHA +A+A LF + ++T+ F TLSG L A++ D I
Sbjct: 78 LCGHATMASAAVLFHKIKNVNSTLTFVTLSGELKARRAEDG------------------I 119
Query: 63 ELDFPAAPTADFNFSEVS-LILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFD 121
LDFP PT +F EV LI A+G ++V D++ + + V L + + L+
Sbjct: 120 VLDFPLYPTFPQDFHEVKDLIKAAIGDTTVQDIQYSPDTRKLLVRLSDSYDRSFLESLKV 179
Query: 122 EMKKCPG------TRGIIVSGLAPPESG-----FDFYSRFFCPKFGVNEDPVCGSAYCAL 170
+ PG +G+I++ ESG +DFYSR+F P GV EDPV GSA+ L
Sbjct: 180 NTEPLPGIEKTGKVKGLILT--VKGESGGQTTPYDFYSRYFAPWVGVPEDPVTGSAHTVL 237
Query: 171 ATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSL 220
++YWSQ+LGK + A+ S R G L+I L + RV ++G A V++G L
Sbjct: 238 SSYWSQQLGKKEMRAFQCSCRGGELDISL-RPDGRVDMKGGAAVVLEGML 286
>sp|Q9CXN7|PBLD2_MOUSE Phenazine biosynthesis-like domain-containing protein 2 OS=Mus
musculus GN=Pbld2 PE=2 SV=1
Length = 288
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/231 (35%), Positives = 120/231 (51%), Gaps = 35/231 (15%)
Query: 3 LCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFI 62
LCGHA LA+A LF + ++T+ F T+SG L A++ D I
Sbjct: 78 LCGHATLASAAVLFQKRKNTNSTLTFVTMSGELKARREEDG------------------I 119
Query: 63 ELDFPAAPTADFNFSEVS-LILEALGVSSVVDMKITTTCEDIFV---------VLPSAKS 112
LDFP PT +F EV LI A+G + V D++ + +++ V L S K
Sbjct: 120 VLDFPVYPTFPQDFHEVEDLIKAAIGDTLVQDIRYSPDTKNLLVRLSDSYDRSFLESLKV 179
Query: 113 VTDLQPKFDEMKKCPGTRGIIVSGLAPP---ESGFDFYSRFFCPKFGVNEDPVCGSAYCA 169
T+ P ++ K RG+I++ P + +DFYSR F P GV EDPV GS +
Sbjct: 180 NTEPLPAIEKTGKV---RGLILTVKGEPGGQTALYDFYSRCFAPWVGVAEDPVTGSTHTL 236
Query: 170 LATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSL 220
L YWS++LGK + A+ S R G L+I+L + RV ++G A+ V++G+L
Sbjct: 237 LGPYWSEELGKKEMRAFQCSRRGGELDINL-RPDGRVDIKGGAVIVLEGTL 286
>sp|P30039|PBLD_HUMAN Phenazine biosynthesis-like domain-containing protein OS=Homo
sapiens GN=PBLD PE=1 SV=2
Length = 288
Score = 114 bits (284), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 116/228 (50%), Gaps = 29/228 (12%)
Query: 3 LCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFI 62
LCGHA LA+A LF + ++T+ F TLSG L A++ D I
Sbjct: 78 LCGHATLASAAVLFHKIKNMNSTLTFVTLSGELRARRAEDG------------------I 119
Query: 63 ELDFPAAPTADFNFSEVS-LILEALGVSSVVDMKITTTCEDIFVVLPSAKS---VTDLQP 118
LD P P +F EV LI A+G + V D+ + + + V L + + +L+
Sbjct: 120 VLDLPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTQKLLVRLSDVYNRSFLENLKV 179
Query: 119 KFDEMKKCPGT---RGIIVSGLAPP---ESGFDFYSRFFCPKFGVNEDPVCGSAYCALAT 172
+ + + T +G+I++ P FDFYSR+F P GV EDPV GSA+ L++
Sbjct: 180 NTENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSS 239
Query: 173 YWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSL 220
YWSQ LGK + A+ S R G L I L + RV +RG A V++G+L
Sbjct: 240 YWSQHLGKKEMHAFQCSHRGGELGISL-RPDGRVDIRGGAAVVLEGTL 286
>sp|Q2HJF4|PBLD_BOVIN Phenazine biosynthesis-like domain-containing protein OS=Bos taurus
GN=PBLD PE=2 SV=1
Length = 288
Score = 113 bits (283), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 114/228 (50%), Gaps = 29/228 (12%)
Query: 3 LCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFI 62
LCGHA LA+A LF + +T+ F T+SG L A+K D I
Sbjct: 78 LCGHATLASAAVLFHKIKNVHSTLTFVTMSGELKARKEEDG------------------I 119
Query: 63 ELDFPAAPTADFNFSEVS-LILEALGVSSVVDMKITTTCEDIFVVLPSA------KSVTD 115
LD P P EV LI A+G + V D++ + + + V L +S+T
Sbjct: 120 VLDLPLYPAHPQKLHEVEDLIKTAIGDTLVQDVRYSPDTKKLLVRLSDTYNRSFLESLTV 179
Query: 116 LQPKFDEMKKCPGTRGIIVSGLAPP---ESGFDFYSRFFCPKFGVNEDPVCGSAYCALAT 172
+++ +G+I++ P FDFYSR+F P +GV EDPV GSA+ L++
Sbjct: 180 NTENLLQVETTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWYGVAEDPVTGSAHTVLSS 239
Query: 173 YWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSL 220
YWS++LGK D A+ S R G L I L + RV ++G A V++G+L
Sbjct: 240 YWSEQLGKKDLHAFQCSNRGGELTISL-RSDGRVDIKGGAALVLEGTL 286
>sp|Q9I073|Y2770_PSEAE Uncharacterized isomerase PA2770 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA2770
PE=3 SV=1
Length = 259
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 108/223 (48%), Gaps = 36/223 (16%)
Query: 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
++LCGHA LA A L + S + F T SG L ++ D AM
Sbjct: 68 VDLCGHATLATAWVLIHKLDDASPVLRFATRSGELSVRREGDSLAM-------------- 113
Query: 61 FIELDFPAA---PTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQ 117
DFPA P A + +LEALG++ +K +D VV+ K++ L
Sbjct: 114 ----DFPAKRPEPCATPDG-----LLEALGIAEAEVLK----TDDYLVVVDDEKTIAALA 160
Query: 118 PKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQK 177
P F +K P RG+ V+ + FDF SR+F P GVNEDPV GSA+ +LA YW+Q+
Sbjct: 161 PDFARLKGLP-CRGVAVTARS---QRFDFVSRWFGPNVGVNEDPVTGSAHTSLAPYWAQR 216
Query: 178 LGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSL 220
LGK A R G + D + +RV + GKA M G+L
Sbjct: 217 LGKTRLSAEQGGARKG--RLECDVRGERVVISGKAALYMSGTL 257
>sp|Q5RDZ1|PBLD_PONAB Phenazine biosynthesis-like domain-containing protein OS=Pongo
abelii GN=PBLD PE=2 SV=1
Length = 288
Score = 108 bits (270), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 113/230 (49%), Gaps = 29/230 (12%)
Query: 3 LCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFI 62
LCGHA LA+A LF + ++ + F TLSG L A++ D I
Sbjct: 78 LCGHATLASAAVLFHKIKNMTSMLTFVTLSGELRARRAEDG------------------I 119
Query: 63 ELDFPAAPTADFNFSEVS-LILEALGVSSVVDMKITTTCEDIFVVLPSAKS---VTDLQP 118
LDFP P +F EV LI A+G + V D+ + + + L + +L+
Sbjct: 120 ILDFPLYPAHPQDFHEVEDLIKTAIGNTLVQDICYSPDTRKLLIRLSDVYDRSFLENLKV 179
Query: 119 KFDEMKKCPGT---RGIIVSGLAPP---ESGFDFYSRFFCPKFGVNEDPVCGSAYCALAT 172
+ + + T +G+I++ P FDFYSR+F P V EDPV GSA+ L++
Sbjct: 180 NTENLLQVENTGKVKGLILTLKGEPGGQTQAFDFYSRYFAPWVAVAEDPVTGSAHAVLSS 239
Query: 173 YWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
YWSQ LGK + A+ S R G L I L + RV + G A V++G+L V
Sbjct: 240 YWSQHLGKKEMHAFQCSRRGGELGISL-RPDGRVDITGSAAVVLEGTLTV 288
>sp|Q9HY42|Y3578_PSEAE Uncharacterized isomerase PA3578 OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA3578
PE=3 SV=1
Length = 261
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 107/218 (49%), Gaps = 29/218 (13%)
Query: 3 LCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFI 62
LCGHA LAAAH LF +EF + SG L + E +
Sbjct: 70 LCGHATLAAAHVLFEVYDEPGERLEFISRSGALRVNR------------------EDERL 111
Query: 63 ELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDE 122
LDFPA ++ S V L +ALG+ V + + + + V+L S ++V +P F
Sbjct: 112 VLDFPAQYPSEVG-STVELE-QALGLPPV---DVLGSTDKLLVLLESEEAVRACRPDFAA 166
Query: 123 MKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCD 182
+ + P RG+IV+ + DF SRFF P GV+EDPV GSA+C+L YW+Q+L K
Sbjct: 167 LARLP-WRGVIVTARGLQK---DFVSRFFAPAMGVDEDPVTGSAHCSLIPYWAQRLNKLS 222
Query: 183 FVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSL 220
A S R G L L + +RV + G A+ V G +
Sbjct: 223 LTAQQCSARGGELWCRL--EGERVSIAGHAVLVASGRI 258
>sp|Q9A3I3|YX21_CAUCR Uncharacterized isomerase CC_3221 OS=Caulobacter crescentus (strain
ATCC 19089 / CB15) GN=CC_3221 PE=3 SV=1
Length = 275
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 102/224 (45%), Gaps = 32/224 (14%)
Query: 3 LCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFI 62
LCGHA LAAAH LF V+ + F TLSG+L ++ D +
Sbjct: 71 LCGHATLAAAHVLFEELGVDVAMLSFETLSGVLTVRRADDQ------------------L 112
Query: 63 ELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDE 122
E+DFPA P E + EALGV + + V+ +V L+P
Sbjct: 113 EMDFPADPPRRTEIPEG--LAEALGVRP----REVWAGAYLVAVVDDETTVRQLRPDLGA 166
Query: 123 MK----KCPGTRGIIVSGLAPPESGFDF--YSRFFCPKFGVNEDPVCGSAYCALATYWSQ 176
+K + G G V +A ++G D+ SRFF P FG+ EDP GSA+C L +
Sbjct: 167 LKVIGGEATGGAGQTVV-VAQADAGADYAVVSRFFAPGFGIPEDPATGSAHCILMPLFGD 225
Query: 177 KLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSL 220
KLG + A P G ++ + + RV LRG+ TVM+ L
Sbjct: 226 KLGAGRLKFHQAYPGRGG-DLECENRGARVLLRGRGFTVMESQL 268
>sp|Q9KMG3|Y3195_VIBCH Uncharacterized isomerase VC_A0395 OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=VC_A0395
PE=3 SV=1
Length = 279
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 35/219 (15%)
Query: 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
+ LCGH +L A + S+ + F + G ++ K D ++ + EA+ C
Sbjct: 92 INLCGHGSLGAGAAILSK--YQLENVVFNSKYGEVVISKRDDQYSLV---LPSWEAKPC- 145
Query: 61 FIELDFPAAPTADFNFSEVS-LILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPK 119
A P E+S L +A+ V S D+ +VLPS ++V + QP
Sbjct: 146 -------AVPV------EISDLATDAIDVFST---------RDLVLVLPSVEAVMNFQPD 183
Query: 120 FDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLG 179
D +++ +IV+ A SG+ R+F PK G++ED GSA C+LA YW +KLG
Sbjct: 184 DDRLREINEYHALIVTA-ANGNSGYVL--RYFAPKIGISEDLATGSAQCSLAPYWFKKLG 240
Query: 180 KCDFVAYAASPRSGILNIHLDEQNQRV---QLRGKAITV 215
A S G + +N Q + +AI +
Sbjct: 241 SDALNARQLSMSGGYFEVERTTENSITVFAQAKRRAIAI 279
>sp|P58293|Y3446_CLOAB Uncharacterized isomerase CA_C3446 OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=CA_C3446 PE=3 SV=1
Length = 302
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 39/243 (16%)
Query: 3 LCGHAALAAAHTLFSRGLVNSNTIEFTTLSGIL---IAKKVPDVKAMNDSNSQ------N 53
+CGHA +AA + + ++ + T +GIL + K+ D K + +
Sbjct: 75 ICGHATIAAHYARAIENNLETSRVYHKTGAGILPVDVIKENDDYKIIMTQGKIEFGSVID 134
Query: 54 GEAQECYFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSV 113
GE +E L+ E S +LE + V +T + + + S K++
Sbjct: 135 GEKKEKLLRALNI-----------EKSDLLENYKIQIV-----STGHSKVMIGIKSLKTL 178
Query: 114 TDLQPKFD---EMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCAL 170
LQP +D ++ K G V + +S + R F P G+NEDPV G+A L
Sbjct: 179 NKLQPNYDVLSKLSKIIKCNGYYVFAVTSEDSDILIHGRMFAPAIGINEDPVTGNANGPL 238
Query: 171 ATYW-SQKLGKCDFVAYA-------ASPRSGILNIHL---DEQNQRVQLRGKAITVMQGS 219
Y KL D + A R GI+ + + E+ V++ G A+ V +
Sbjct: 239 GAYLVHHKLACYDNSIFKFKAKQGEAIGRQGIIEVEVRVDKEEPVEVKISGNAVVVFKSE 298
Query: 220 LLV 222
L++
Sbjct: 299 LVL 301
>sp|B0TGR9|DAPF_HELMI Diaminopimelate epimerase OS=Heliobacterium modesticaldum (strain
ATCC 51547 / Ice1) GN=dapF PE=1 SV=1
Length = 281
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 29/228 (12%)
Query: 2 ELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVK-AMNDSNSQNGEAQ-EC 59
E+CG+ A ++ RG+V IE TL+GI++ + + D A+ GE + +
Sbjct: 72 EMCGNGIRCLARYVYERGIVAKRRIEVETLAGIIVPEIITDAAGAVTGVCVDMGEPRLQR 131
Query: 60 YFIELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPK 119
+ I + P P + ++ V V + + I+V VT L PK
Sbjct: 132 HQIPMVGPEGPAVN------QELVVGDAVVRVTALSMGNPHCLIYVNDIDEAPVTTLGPK 185
Query: 120 FDEMKKCPGTRGI-IVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCA------LAT 172
+ P + V +AP E + R P CG+ CA L
Sbjct: 186 VEVHPAFPAKTNVEFVQVVAPDEVQMRVWERGAGPTLA------CGTGACATVVGSVLNG 239
Query: 173 YWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSL 220
Y +K+ V A P L+I E+N RV + G A+ V +G L
Sbjct: 240 YTDRKV----TVHLAGGP----LHIEWREENNRVYMTGPAVEVFRGEL 279
>sp|Q8NIL3|AES1_SCHPO Antisense-enhancing sequence 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=aes1 PE=3 SV=1
Length = 296
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 10/129 (7%)
Query: 53 NGEAQECYFIELDFPAAPTADFNFSEVSLILEALGV----SSVVD--MKITTTCEDIFVV 106
+GE E +I P + + +S + ALG+ SS V + I + + +
Sbjct: 113 DGEKDEDTWISFKLPYYKILQTSETAISEVENALGIPLNYSSQVSPPVLIDDGPKWLVIQ 172
Query: 107 LPSAKSVTDLQPKFDEMKK-CPGTRGIIVSGLAPPESGFD-FYSRFFCPKFGVNEDPVCG 164
LP+A V +L PKF + + C I V+ E G D F SR F P VNEDP CG
Sbjct: 173 LPNATDVLNLVPKFQSLSQVCKNNDWIGVTVFG--ELGKDSFESRSFAPLIHVNEDPACG 230
Query: 165 SAYCALATY 173
S A+ Y
Sbjct: 231 SGAGAVGVY 239
>sp|Q9RUQ2|Y1330_DEIRA Uncharacterized isomerase DR_1330 OS=Deinococcus radiodurans
(strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 /
NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1330
PE=3 SV=1
Length = 308
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 64/169 (37%), Gaps = 18/169 (10%)
Query: 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
++ CGHA +A L G +E TL+G + + V D EC
Sbjct: 82 VDFCGHATVALGRVLAQAGRWRGEALELETLAGRIPLRLVLDAGG-----------GECR 130
Query: 61 FIELDFPAAPTADFNFSEVSLILEALGVSSVVDMK------ITTTCEDIFVVLPSAKSVT 114
+ + PA T + EALG+S + + +T +F+ L A +
Sbjct: 131 -VWMHQPAFGTRAVGRGWHRELAEALGLSDRLLHRGLPLAAASTGLWSVFLPLLDASLLE 189
Query: 115 DLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVC 163
L+P + + G++ P F +R F P G+ EDPV
Sbjct: 190 GLEPDLPRIAELSRELGVVSVYAYAPVGVNRFAARDFAPLVGIPEDPVT 238
>sp|Q51792|PHZF_PSEFL Trans-2,3-dihydro-3-hydroxyanthranilate isomerase OS=Pseudomonas
fluorescens GN=phzF PE=1 SV=1
Length = 278
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 69/159 (43%), Gaps = 31/159 (19%)
Query: 82 ILEALGVS-SVVDMKITTTC-EDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAP 139
+L+ALG+S S ++I +FV LPS +++ L P + +G
Sbjct: 133 LLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHDMAINCFAG--- 189
Query: 140 PESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQ----------------KLGKCDF 183
+G + SR F P +GV ED GSA LA + ++ ++G+
Sbjct: 190 --AGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSL 247
Query: 184 VAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
+ A R+ EQ RV++ G +T +G++++
Sbjct: 248 MFAKAEGRA--------EQLTRVEVSGNGVTFGRGTIVL 278
>sp|Q64SY7|DAPF_BACFR Diaminopimelate epimerase OS=Bacteroides fragilis (strain YCH46)
GN=dapF PE=1 SV=1
Length = 269
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 30/220 (13%)
Query: 3 LCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFI 62
+CG+A+ L+ GL + N I TLSGI I + + + + G E I
Sbjct: 74 MCGNASRCIGKYLYEYGLTSKNVITLDTLSGIKILELHLEGRTVETVTVDMGVPLETDTI 133
Query: 63 ELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDE 122
+ D +F F + S+ + + T +DI +V +++++ PK ++
Sbjct: 134 DFD------GEFPFLSTQV--------SMGNPHLVTFVDDIRIV-----NLSEMGPKLEK 174
Query: 123 MKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYC--ALATYWSQKLGK 180
P + + + + R + G+ + CG+ C A+A + + + G+
Sbjct: 175 HPLFPDRTNVEFAQITGENT---IRMRVWERGSGITQ--ACGTGACATAVAAHLTGRTGR 229
Query: 181 CDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSL 220
V G L I DE + + G A+ V G++
Sbjct: 230 TVNVVMDG----GTLTIEWDEATGHISMTGPAVKVFDGTI 265
>sp|Q51520|PHZF_PSECL Trans-2,3-dihydro-3-hydroxyanthranilate isomerase OS=Pseudomonas
chlororaphis GN=phzF PE=3 SV=2
Length = 278
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 82 ILEALGVS-SVVDMKITTTC-EDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAP 139
+L+ALG+S S ++I +FV LPS +++ L P + + + ++ A
Sbjct: 133 LLKALGISDSTFPIEIYHNGPRHVFVGLPSIAALSALHP---DHRALSSFHDMAINCFA- 188
Query: 140 PESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDF 183
+G + SR F P +GV ED GSA LA + ++ G+ +F
Sbjct: 189 -GAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARH-GQIEF 230
>sp|C1D8Q0|DAPF_LARHH Diaminopimelate epimerase OS=Laribacter hongkongensis (strain
HLHK9) GN=dapF PE=1 SV=1
Length = 278
Score = 38.9 bits (89), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 78/223 (34%), Gaps = 21/223 (9%)
Query: 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
+E CG+ A A +F GL + I T G+++ + D D
Sbjct: 72 VEQCGNGARCFARFVFDHGLTDRREIRVETARGVIVPRLADDGLVTVDMGPPR------- 124
Query: 61 FIELDFPAAPTADFNFSEVSLILEALGVS--SVVDMKITTTCEDIFVVLPSAKSVTDLQP 118
F D P D E+ + + LGV+ S+ + +D+ VT P
Sbjct: 125 FRPADIPFVAAEDAVIHELEVAGQILGVTVVSMGNPHAVQVVDDV-----DTAPVTAFGP 179
Query: 119 KFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKL 178
+ + P + +G ES R F + G E CG+ CA A +
Sbjct: 180 LIENHLRFPAR---VNAGFMQIESRTAICLRVF--ERGSGETLACGTGACA-AVVAGIRR 233
Query: 179 GKCDF-VAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSL 220
G D R G L I V + G A+TV +G +
Sbjct: 234 GLLDADTPVTVQTRGGELRIRWAGDGHPVWMTGPAVTVFEGEI 276
>sp|Q9P7P9|YLY6_SCHPO Uncharacterized isomerase C186.06 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC186.06 PE=3 SV=1
Length = 184
Score = 37.4 bits (85), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 101 EDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNED 160
+ + LP+ V +L P F + +C + + + + R FCP GVNED
Sbjct: 52 RNAIIQLPNGADVLNLNPNFQAIFECCSKNSLTGVQIFGMYNDGTYELRSFCPVHGVNED 111
Query: 161 PVCGSAYCALATYWS 175
P GS ++ +++
Sbjct: 112 PANGSGAGSVGVFFA 126
>sp|P38765|YHI9_YEAST Uncharacterized isomerase YHI9 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YHI9 PE=1 SV=1
Length = 294
Score = 36.2 bits (82), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 131 GIIVSGLAPPESGFDFYS-RFFCPKFGVNEDPVCGSAYCALATYWSQ--KLGKCDFVAYA 187
GII++G + + Y R F P V EDPVCGS ALA Y + K K + +
Sbjct: 194 GIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVALARYLQEVYKFEKTTDITIS 253
Query: 188 AS---PRSGILNIHLDEQ---NQRVQLRGKAITVMQGSLLV 222
R+G++ + ++ + + G A TV+ G + V
Sbjct: 254 EGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 294
>sp|A5D193|DAPF_PELTS Diaminopimelate epimerase OS=Pelotomaculum thermopropionicum
(strain DSM 13744 / JCM 10971 / SI) GN=dapF PE=1 SV=1
Length = 280
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 2 ELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAK 38
E+CG+A A L+ RG+V ++ I TL+G++I +
Sbjct: 71 EMCGNAIRCVAKYLYERGMVKADRIRVETLAGVMIPE 107
>sp|B8IZX7|DAPF_DESDA Diaminopimelate epimerase OS=Desulfovibrio desulfuricans (strain
ATCC 27774 / DSM 6949) GN=dapF PE=1 SV=1
Length = 287
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 149 RFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASP-----RSGILNIHLDEQN 203
R + G E CG+ CA+A C YA + G L+IH DE +
Sbjct: 216 RMRVWERGAGETLACGTGACAVAV-------ACVLNGYAGRDVEVELKGGSLHIHWDEAS 268
Query: 204 QRVQLRGKAITVMQGSLLV 222
V + G A+TV G +
Sbjct: 269 NHVYMTGGAVTVFSGEYYI 287
>sp|O69754|PHZF_PSEAE Trans-2,3-dihydro-3-hydroxyanthranilate isomerase OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=phzF1 PE=3 SV=2
Length = 278
Score = 35.4 bits (80), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 75 NFSEVSLILEALGV-SSVVDMKITTTC-EDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGI 132
+FS + +L ALG+ S +++ +FV L S +++ L P + P
Sbjct: 126 HFSRPAELLAALGLKGSTFPIEVYRNGPRHVFVGLESVAALSALHPDHRALCDFPDLAVN 185
Query: 133 IVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQK 177
+G +G + SR F P +GV ED GSA LA + ++
Sbjct: 186 CFAG-----AGRHWRSRMFSPAYGVVEDAATGSAAGPLAIHLARH 225
>sp|A6Q160|DAPF_NITSB Diaminopimelate epimerase OS=Nitratiruptor sp. (strain SB155-2)
GN=dapF PE=1 SV=1
Length = 250
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 2 ELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDV 43
E+CG+ + AAAH +S GL S + F TL+G++ A DV
Sbjct: 67 EMCGNGSRAAAHYAYSYGLA-SKQMRFLTLAGVIEASVEADV 107
>sp|A3DK16|DAPF_CLOTH Diaminopimelate epimerase OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=dapF PE=1 SV=1
Length = 280
Score = 35.4 bits (80), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 2 ELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAK-KVPDVKA 45
E+CG+A +F RG+ N N I TL+GI + + V D KA
Sbjct: 69 EMCGNAIRCVGKYVFDRGMTNKNVIRVETLAGIKVLELTVQDGKA 113
>sp|A4J568|DAPF_DESRM Diaminopimelate epimerase OS=Desulfotomaculum reducens (strain
MI-1) GN=dapF PE=1 SV=1
Length = 284
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 23/226 (10%)
Query: 2 ELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYF 61
E+CG+A A L+ G++ + I+ TL+GI++ + + ++ GE +
Sbjct: 71 EMCGNAIRCVAKYLYDHGIIKKDEIKVETLAGIIVPQIIQQEGSVKAVRVDMGEPR-VER 129
Query: 62 IELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCED----IFVVLPSAKSVTDLQ 117
E+ P +I E L V+ V + + + IFV S+T +
Sbjct: 130 AEIPMIGPPG--------QVIGEELAVNGKVYLVTAVSMGNPHCIIFVPDLEDISLTQVG 181
Query: 118 PKFDEMKKCPGTRGI-IVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQ 176
P+ + P + V L P E + R P CG+ CA+A
Sbjct: 182 PQIEVHPAFPKKTNVEFVQVLGPNEVRMVVWERGAGPTM------ACGTGACAVAVAGVL 235
Query: 177 KLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222
G + + P G L I E N R+ + G A V G V
Sbjct: 236 N-GFTERMVTVHLP-GGSLMIEWAE-NGRIYMTGPATEVFSGEYTV 278
>sp|A1TKA9|DAPF_ACIAC Diaminopimelate epimerase OS=Acidovorax citrulli (strain AAC00-1)
GN=dapF PE=1 SV=1
Length = 292
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%)
Query: 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY 60
+E CG+ A A + +GL + +TI TL+G++ + PD + D + E
Sbjct: 72 VEQCGNGARCFARYVRDKGLTDRDTIRVQTLAGVIAPRLTPDGRVTVDMGRPRFDPAEVP 131
Query: 61 F 61
F
Sbjct: 132 F 132
>sp|P73125|Y1019_SYNY3 Uncharacterized isomerase slr1019 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1019 PE=3 SV=2
Length = 306
Score = 33.9 bits (76), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 18/86 (20%)
Query: 146 FYSRFFCPKFGVNEDPVCGSAYCALATY------------WSQKLGKCDFVAYAASPRSG 193
+ R F P G+ EDP GS AL Y W + GK P
Sbjct: 220 IHGRMFAPGLGIAEDPATGSGVAALGGYLDDRLDTPGSHHWQIEQGKA-----LGRPSQL 274
Query: 194 ILNIHLDEQNQR-VQLRGKAITVMQG 218
L + D Q R V++ G+++ V +G
Sbjct: 275 QLTVVKDGQGIRAVKVAGRSVLVSEG 300
>sp|Q8NP73|DAPF_CORGL Diaminopimelate epimerase OS=Corynebacterium glutamicum (strain
ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB
10025) GN=dapF PE=1 SV=1
Length = 277
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 2 ELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGI 34
E+CG+ AH L+SRGLV++ + + T +G+
Sbjct: 81 EMCGNGVRLFAHWLYSRGLVDNTSFDIGTRAGV 113
>sp|P40788|YDDE_SALTY Uncharacterized isomerase YddE OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=yddE PE=3 SV=2
Length = 297
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 18/177 (10%)
Query: 3 LCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFI 62
+CGHA +AA + + + + T+ T+L+G +V ND + Q +
Sbjct: 71 ICGHATVAAHYVRATVLGLGNTTVWQTSLAG---RHRVEIHAEHNDYRITLEQGQPSFEP 127
Query: 63 EL--DFPAAPTADFNFSEVSLILEA-LGVSSVVDMKITTTCE---DIFVVLPSAKSVTDL 116
L + AA N +E ++ A + V+S K+ + DI + P+ ++T +
Sbjct: 128 PLVGEIRAAIITALNLTEDDIVPGAPIQVASTGHAKVMILLKPDVDIDALSPNLAALTAI 187
Query: 117 QPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATY 173
+ G G + P ++ D R F P G+ EDPV G+A + +
Sbjct: 188 SQQI-------GCNGFFPFQIRPGKNETD--GRMFSPAIGIVEDPVTGNANGPMGAW 235
>sp|Q2LD53|T23O_MAYDE Tryptophan 2,3-dioxygenase OS=Mayetiola destructor PE=3 SV=1
Length = 389
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 64 LDFPA--APTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFD 121
+DF +P + F + L+ LGV +K +D+F AKS+ L D
Sbjct: 128 MDFRGYLSPASGFQSLQFRLLENKLGVKQEHRVKYNQKYQDVFG--DDAKSLDMLTASED 185
Query: 122 EMKKCPGTRGIIVSGLAPPESGFDFYSRF 150
E C + + ESGF+FY +F
Sbjct: 186 EPSLCDLVQKWLERTPGLEESGFNFYQKF 214
>sp|P37757|YDDE_ECOLI Uncharacterized isomerase YddE OS=Escherichia coli (strain K12)
GN=yddE PE=1 SV=2
Length = 297
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 20/178 (11%)
Query: 3 LCGHAALAAAHTLFSRGLVNSN-TIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYF 61
+CGHA +AA H + ++ L N TI T+L+G K ++ ND + E F
Sbjct: 71 ICGHATVAA-HYVRAKVLGLGNCTIWQTSLAG----KHRVTIEKHNDDYRISLEQGTPGF 125
Query: 62 ---IELDFPAAPTADFNFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQP 118
+E + AA + +E IL L + TT + + L + L P
Sbjct: 126 EPPLEGETRAAIINALHLTEDD-ILPGLPIQVA-----TTGHSKVMIPLKPEVDIDALSP 179
Query: 119 KFDEM---KKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATY 173
+ + K G G + P ++ D R F P G+ EDPV G+A + +
Sbjct: 180 DLNALTAISKKIGCNGFFPFQIRPGKNETD--GRMFSPAIGIVEDPVTGNANGPMGAW 235
>sp|O67693|DAPF_AQUAE Diaminopimelate epimerase OS=Aquifex aeolicus (strain VF5) GN=dapF
PE=1 SV=1
Length = 279
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 2 ELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAK 38
E+CG+ + A + RG+V N + F TL+G++ A+
Sbjct: 79 EMCGNGSRCAVRFAYERGIV-GNKVRFETLAGVIKAE 114
>sp|O31570|YFHB_BACSU Uncharacterized isomerase YfhB OS=Bacillus subtilis (strain 168)
GN=yfhB PE=3 SV=1
Length = 293
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 77/189 (40%), Gaps = 30/189 (15%)
Query: 1 MELCGHAALAAAHTLFSRGLVNS-NTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQEC 59
M LCGHA +A+ + L +G++ S T T +GIL K + ++G
Sbjct: 70 MNLCGHATVASLYALCEKGMLESGKTYSIQTKAGILPVK----------ISEKDGRIH-- 117
Query: 60 YFIELDFPAAPTADFNFSEVSLILEALGVSSV---VDMKITTTCEDIFVVLPSAKSVTDL 116
I L+ A+P + + +ALG++ D+ I I+ + KS+
Sbjct: 118 --ITLE-QASPQFKPFTGDRKKLADALGITDEDFHEDLPIVFGSTGIWTAIVPLKSLEAS 174
Query: 117 QPKFDEMKKCPGTR-GIIVSGLAP-------PESGFDFYSRFF-CPKFGVNEDPVCGSAY 167
+ + K+ P + + + P P+S D + R F P G EDPV G+A
Sbjct: 175 KKMVPDNKQFPEVLVDLPKASVHPFTFETVHPDS--DLHGRHFSSPYSGTIEDPVTGTAS 232
Query: 168 CALATYWSQ 176
+ Y
Sbjct: 233 GVMGAYMKH 241
>sp|A4QEV1|DAPF_CORGB Diaminopimelate epimerase OS=Corynebacterium glutamicum (strain R)
GN=dapF PE=1 SV=1
Length = 277
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 2 ELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGI 34
E+CG+ AH L+SR LV++ + + T +G+
Sbjct: 81 EMCGNGVRLFAHWLYSRSLVDNTSFDIGTRAGV 113
>sp|Q5HM33|NPD_STAEQ NAD-dependent protein deacetylase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=cobB PE=3 SV=1
Length = 246
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 22 NSNTIEFTTLSGILIAKKVPDVKAMN---DSNSQNGEAQECYFIELDFPAAPTADF-NFS 77
NSN I F T +G+ +A +PD ++M D S++G++ E Y + +D F NF
Sbjct: 15 NSNQIVFFTGAGVSVASGIPDFRSMGGLYDEISKDGQSPE-YLLSIDHLHDNKESFINFY 73
Query: 78 EVSLIL 83
L++
Sbjct: 74 HERLLI 79
>sp|Q8CNF4|NPD_STAES NAD-dependent protein deacetylase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=cobB PE=3 SV=1
Length = 246
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 22 NSNTIEFTTLSGILIAKKVPDVKAMN---DSNSQNGEAQECYFIELDFPAAPTADF-NFS 77
NSN I F T +G+ +A +PD ++M D S++G++ E Y + +D F NF
Sbjct: 15 NSNQIVFFTGAGVSVASGIPDFRSMGGLYDEISKDGQSPE-YLLSIDHLHDNKESFINFY 73
Query: 78 EVSLIL 83
L++
Sbjct: 74 HERLLI 79
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,248,692
Number of Sequences: 539616
Number of extensions: 3217817
Number of successful extensions: 6380
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6329
Number of HSP's gapped (non-prelim): 47
length of query: 222
length of database: 191,569,459
effective HSP length: 113
effective length of query: 109
effective length of database: 130,592,851
effective search space: 14234620759
effective search space used: 14234620759
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)