Query 027494
Match_columns 222
No_of_seqs 110 out of 1052
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 18:07:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027494.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027494hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dun_A Putative phenazine bios 100.0 2.6E-43 9E-48 296.1 21.0 192 1-222 69-261 (263)
2 3edn_A Phenazine biosynthesis 100.0 3.5E-40 1.2E-44 282.2 22.7 206 1-222 70-299 (299)
3 1s7j_A Phenazine biosynthesis 100.0 8.5E-40 2.9E-44 275.0 20.2 193 1-222 68-260 (262)
4 1ym5_A YHI9, hypothetical 32.6 100.0 8.3E-40 2.9E-44 280.0 19.0 204 1-222 77-294 (300)
5 1xub_A Phenazine biosynthesis 100.0 2.1E-39 7.3E-44 277.3 21.1 200 1-222 89-298 (298)
6 1qya_A ORFB, hypothetical prot 100.0 4.6E-39 1.6E-43 276.2 16.6 204 1-222 79-305 (307)
7 1u0k_A Gene product PA4716; sc 100.0 6.6E-36 2.3E-40 254.4 15.9 196 1-222 72-284 (288)
8 2gke_A DAP epimerase, diaminop 100.0 4.6E-35 1.6E-39 247.5 11.2 197 1-222 70-274 (274)
9 2otn_A Diaminopimelate epimera 100.0 6.9E-33 2.4E-37 237.9 15.9 198 1-222 93-304 (308)
10 3fve_A DAP epimerase, diaminop 100.0 8.8E-31 3E-35 222.0 16.4 192 1-221 85-282 (290)
11 2azp_A Hypothetical protein PA 100.0 7.1E-29 2.4E-33 213.7 14.8 188 1-222 87-304 (318)
12 3ejx_A DAP epimerase, diaminop 99.9 9.2E-28 3.2E-32 204.9 11.9 199 1-222 96-311 (317)
13 1tm0_A Proline racemase; struc 99.8 2.9E-20 9.8E-25 162.0 14.6 198 1-222 87-322 (350)
14 1w61_A B-cell mitogen; racemas 99.8 1.2E-19 4.2E-24 160.8 10.7 199 1-222 127-379 (414)
15 2pw0_A PRPF methylaconitate is 97.3 0.024 8.2E-07 49.4 17.7 39 2-40 105-153 (397)
16 3fve_A DAP epimerase, diaminop 96.0 0.021 7.3E-07 47.9 8.1 95 97-200 9-124 (290)
17 1s7j_A Phenazine biosynthesis 95.9 0.041 1.4E-06 45.1 9.0 94 97-209 16-114 (262)
18 3ejx_A DAP epimerase, diaminop 95.8 0.04 1.4E-06 46.7 8.9 94 97-200 34-136 (317)
19 1ym5_A YHI9, hypothetical 32.6 95.1 0.14 4.7E-06 42.8 9.9 98 98-209 19-124 (300)
20 1xub_A Phenazine biosynthesis 95.0 0.055 1.9E-06 45.2 7.0 52 143-200 75-126 (298)
21 3edn_A Phenazine biosynthesis 95.0 0.1 3.4E-06 43.6 8.5 88 97-200 17-110 (299)
22 2gke_A DAP epimerase, diaminop 94.9 0.1 3.4E-06 43.0 8.2 94 97-200 8-109 (274)
23 1u0k_A Gene product PA4716; sc 94.7 0.12 4.3E-06 42.8 8.4 88 98-200 19-112 (288)
24 2otn_A Diaminopimelate epimera 94.5 0.18 6.3E-06 42.2 9.0 52 143-199 78-131 (308)
25 4dun_A Putative phenazine bios 94.5 0.2 6.7E-06 41.3 9.0 58 143-208 55-114 (263)
26 3g7k_A 3-methylitaconate isome 94.5 0.25 8.5E-06 42.8 9.8 39 2-40 94-138 (391)
27 1qya_A ORFB, hypothetical prot 92.3 0.43 1.5E-05 39.8 7.6 51 143-200 65-118 (307)
28 2azp_A Hypothetical protein PA 91.7 0.77 2.6E-05 38.4 8.6 60 143-209 73-134 (318)
29 1tm0_A Proline racemase; struc 87.9 2.2 7.5E-05 36.3 8.5 53 142-200 72-130 (350)
30 1w61_A B-cell mitogen; racemas 87.2 2.4 8.3E-05 37.1 8.5 53 142-200 112-172 (414)
No 1
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile}
Probab=100.00 E-value=2.6e-43 Score=296.12 Aligned_cols=192 Identities=34% Similarity=0.606 Sum_probs=165.2
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEeCCCCCCCCCCcccHH
Q 027494 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVS 80 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~~~~~~~~~ 80 (222)
+|||||||||++++|++.+....+.++|+|++|.+++++.. +. ++|.+|.+.+.+... .+
T Consensus 69 v~~CGHatl~~a~~l~~~~~~~~~~~~~et~aG~l~v~~~~----------------~~--i~m~~p~~~~~~~~~--~~ 128 (263)
T 4dun_A 69 IDLCGHATLAAAYVISNFIDVNVKKIDFFTQSGKLEVTRNG----------------NL--YEMIFPEIMPIEIEL--SP 128 (263)
T ss_dssp ESCCHHHHHHHHHHHHHHTSTTCSEEEEEETTEEEEEEEET----------------TE--EEEEEECCCCEECCC--CH
T ss_pred eccCCcHHHHHHHHHHHhcCCCCCeEEEEeCCeEEEEEEeC----------------CE--EEEeCCCCCccCCCC--HH
Confidence 58999999999999999876656789999999999999963 33 567777766555432 46
Q ss_pred HHHHHhCCCceeeeeecCCCceEEEEeCChhhhcccCCChhhHhcCCCCceEEEEeeCCCCCcccEEEeecCCCCCCCcc
Q 027494 81 LILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNED 160 (222)
Q Consensus 81 ~l~~algl~~~~~~~~~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~f~p~~Gv~ED 160 (222)
+++++||+.+ .++. +| ++++++++|.+.|.+++||++++.++++..|+++|+.. ++.+|++|+|+|+.| +||
T Consensus 129 ~l~~aLg~~~-~~v~--~g-~~~~v~l~~~~~l~~l~pd~~~l~~l~~~~gv~v~~~~---~~~d~~~R~FaP~~G-~ED 200 (263)
T 4dun_A 129 QQANLIGCVP-SDVY--SS-RDLILLLNSEQEVINYKPNYAQLRKLTDWLGIIITAQG---SNTDFVSRYFCPELD-SED 200 (263)
T ss_dssp HHHHHSSSCC-SEEE--ES-SSEEEECSCHHHHHHCCCCHHHHTTCTTCSCEEEEEEC---SSSSEEEEEEETTTT-EEE
T ss_pred HHHHHcCCCH-HHeE--cC-CcEEEEECCHHHHHhCCCCHHHHHHhcCCceEEEEecC---CCceEEEEeecCCCC-CCC
Confidence 7889999988 5543 36 47999999999999999999999999666799999874 357899999999999 999
Q ss_pred CccccchhhhHHHHHhhhCCceEEEeeccCCCeEEEEEEccCCCe-EEEeeeEEEEEEEEEEC
Q 027494 161 PVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQR-VQLRGKAITVMQGSLLV 222 (222)
Q Consensus 161 patGSa~~ala~yl~~~~~~~~~~~~Qg~~r~g~l~v~~~~~~~~-v~v~G~a~~v~~G~i~~ 222 (222)
||||||+|+|++||.+++++..+.++|++.|+|+|+|+++ +++ |+|+|+|+++++|+|.+
T Consensus 201 PvTGSa~~aLa~yl~~~l~~~~~~~~Q~~~R~G~l~v~~~--~~~~V~vgG~av~v~~G~i~~ 261 (263)
T 4dun_A 201 PVTGSSHCNLIPYWSEKLGKHKMVAAQLSNRGGIIQCEVL--KDNTVKISGEAVLFMQGTIKI 261 (263)
T ss_dssp SCCSTTHHHHHHHHHHHHTCSEEEEEECSSSCEEEEEEEC--SSSEEEEEECEEEEEEEEECC
T ss_pred cccchhhHHHHHHHHHhcCCCcEEEEEEECCCEEEEEEEE--CCcEEEEEeEEEEEEEEEEEc
Confidence 9999999999999988788888999999999999999997 346 99999999999999975
No 2
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}
Probab=100.00 E-value=3.5e-40 Score=282.23 Aligned_cols=206 Identities=20% Similarity=0.329 Sum_probs=163.5
Q ss_pred CCCCChHHHHHHHHHHhcCCC-CCCcEEEEeceeeEEEEEe-cCcccccCCCCCCCCCcceeEEEEeCCCCCCCCCCccc
Q 027494 1 MELCGHAALAAAHTLFSRGLV-NSNTIEFTTLSGILIAKKV-PDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSE 78 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~~-~~~~~~~~t~~G~v~v~~~-~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~~~~~~~ 78 (222)
++||||||||+|++|++.+.. .++.++|+|++|.+++++. . .+ +.+.++|.++.+.+.+... .
T Consensus 70 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~~eT~aG~l~v~~~~~----------~~----~~~~v~v~~~~p~~~~~~~-~ 134 (299)
T 3edn_A 70 MDLCGHGTVGTIYALRERGLLEEKASLTIETKAGILPIQIGVN----------EN----GETFIKMRQTAPQFKDFAG-S 134 (299)
T ss_dssp ESCCHHHHHHHHHHHHHTTCSCSCSEEEEEETTEEEEEEEEEC----------TT----SCEEEEEECCCCEEEECCS-C
T ss_pred cccCccHHHHHHHHHHHcCCCCCCCEEEEEcCceEEEEEEEEc----------CC----CcEEEEEEcCCccccCCCC-C
Confidence 589999999999999998765 4567999999999999986 2 12 2224566666554443221 2
Q ss_pred HHHHHHHhCCCceee-------eeecCCCceEEEEeCChhhhcccCCChhhHhcCCC---CceEEEEeeCCCCCcccEEE
Q 027494 79 VSLILEALGVSSVVD-------MKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPG---TRGIIVSGLAPPESGFDFYS 148 (222)
Q Consensus 79 ~~~l~~algl~~~~~-------~~~~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~---~~gv~v~~~~~~~~~~~~~~ 148 (222)
...+.+++++.. .+ ..+++|+||++++++|.+.|.+++||++.+..+++ ..++++|+..+..++.++++
T Consensus 135 ~~~~~~~l~~~~-~~~~~~~~~~~vs~G~ph~vv~v~~~~~l~~~~p~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~ 213 (299)
T 3edn_A 135 KEELAHSIGLEV-NDLDVSLPIVYGSTGNWTVIVPVKNLDVCERMKPNNEVFPSVLKEIPNASIHPICLETYDEKVHMHG 213 (299)
T ss_dssp HHHHHHHTTCCG-GGBCTTSCCEEEESSSEEEEEEBSCHHHHHHCCCCGGGHHHHCSSSTTCEEEEEESCCSSTTCSEEE
T ss_pred HHHHHHHhCCCh-hHcccCCCeEEEEcCCCeEEEEeCCHHHHhhCCCCHHHHHHHHhhcCccEEEEEEecCCCCCccEEE
Confidence 456778888765 22 23689999999999999999999999999988764 35788887654344678999
Q ss_pred eecCCC-CCCCccCccccchhhhHHHHHhhhC-----CceEEEeecc--CCCeEEEEEEccC-C---CeEEEeeeEEEEE
Q 027494 149 RFFCPK-FGVNEDPVCGSAYCALATYWSQKLG-----KCDFVAYAAS--PRSGILNIHLDEQ-N---QRVQLRGKAITVM 216 (222)
Q Consensus 149 R~f~p~-~Gv~EDpatGSa~~ala~yl~~~~~-----~~~~~~~Qg~--~r~g~l~v~~~~~-~---~~v~v~G~a~~v~ 216 (222)
|+|+|. .|++||||||||+||||+||.++.. +..+.++||+ +|+|.|+|+++.+ + .+|+|+|+|++++
T Consensus 214 R~f~p~~~Gv~EdpatGSa~~ala~~l~~~~~~~~~~~~~~~v~Qg~~~~rgG~l~v~~~~~~~~~~~~v~l~G~a~~v~ 293 (299)
T 3edn_A 214 RHFSSAYAGTIEDPVTGTASGVMGAYYATYVEKDFDHEMELIVEQGQEIHKDGRVTVYVTKDVESEKLQIDIAGTAVYVK 293 (299)
T ss_dssp CEECCTTSSCSEESSCHHHHHHHHHHHHHHTCCCCSSEEEEEEEECGGGTCCEEEEEEEECCTTCSSCEEEEEECEEEEE
T ss_pred eccccccCCCcCCCcccHHHHHHHHHHHHcCCCCCCCceEEEEeccCccCCCeEEEEEEEecCCCCeeEEEEEeEEEEEE
Confidence 999965 5999999999999999999987642 2368899995 8999999999753 2 3899999999999
Q ss_pred EEEEEC
Q 027494 217 QGSLLV 222 (222)
Q Consensus 217 ~G~i~~ 222 (222)
+|+|.|
T Consensus 294 ~G~i~i 299 (299)
T 3edn_A 294 EFEVLI 299 (299)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999986
No 3
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2
Probab=100.00 E-value=8.5e-40 Score=275.02 Aligned_cols=193 Identities=36% Similarity=0.595 Sum_probs=162.9
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEeCCCCCCCCCCcccHH
Q 027494 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVS 80 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~~~~~~~~~ 80 (222)
+|||||||||+|++|++.+...++.++|+|++|.+++++.. +. ++|.+|.+...+++. .+
T Consensus 68 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~et~~G~l~v~~~~----------------~~--v~m~~p~~~~~~~~~--~~ 127 (262)
T 1s7j_A 68 IDLCGHATLATAFVLFNYYSVAEETLHFTSQSGPLAVTKKE----------------EY--YYLDFPYILPERIPI--LP 127 (262)
T ss_dssp ESCCHHHHHHHHHHHHHHSCCCSSEEEEEETTEEEEEEEET----------------TE--EEEEEECCCCEECCC--CH
T ss_pred cCcCchHHHHHHHHHHHhcCCCCCeEEEEeCceEEEEEEEC----------------CE--EEEecCCCCccCCCC--hH
Confidence 58999999999999998887666789999999999999853 23 678888876555442 34
Q ss_pred HHHHHhCCCceeeeeecCCCceEEEEeCChhhhcccCCChhhHhcCCCCceEEEEeeCCCCCcccEEEeecCCCCCCCcc
Q 027494 81 LILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVNED 160 (222)
Q Consensus 81 ~l~~algl~~~~~~~~~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~f~p~~Gv~ED 160 (222)
.+..++++.+ .++ +++ ||+++++++.+.|.+++||++.+.+++...|+++|+.. ++.++++|+|+|+.|++||
T Consensus 128 ~~~~~l~~~~-~~~-~~~--ph~vv~v~~~~~l~~~~p~~~~~~~~~~~~gv~vf~~~---~~~~~~~R~f~p~~Gv~Ed 200 (262)
T 1s7j_A 128 EYEAALGTKI-YEA-YLG--RDLFFVLKDEETVAKITPDFSALKALDLGVGVIVTASG---DSVDFVSRTFFPKLRINED 200 (262)
T ss_dssp HHHHHHTSCC-SEE-EES--SSEEEECSCHHHHHHCCCCHHHHHHCSSCSSEEEEEEC---SSSSEEEEEEEGGGTEEEE
T ss_pred HHHHHcCCCh-HHe-Eec--CeEEEEECCHHHHHhCCCCHHHHHhhcccCcEEEEEec---CCCeEEEEeccccCCCCCc
Confidence 5667888876 444 443 99999999999999999999999998743588888764 3567999999999999999
Q ss_pred CccccchhhhHHHHHhhhCCceEEEeeccCCCeEEEEEEccCCCeEEEeeeEEEEEEEEEEC
Q 027494 161 PVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222 (222)
Q Consensus 161 patGSa~~ala~yl~~~~~~~~~~~~Qg~~r~g~l~v~~~~~~~~v~v~G~a~~v~~G~i~~ 222 (222)
||||||+||+++||.+++++..+.++||+.|+|.|+++++ +++|+|+|+|+++++|+|.+
T Consensus 201 ~acGS~~~ala~~~~~~~~~~~~~v~Qg~~rgG~l~v~~~--~~~V~i~G~a~~v~~G~l~~ 260 (262)
T 1s7j_A 201 PVCGSAHANLIPYWGKRLNQTTLSAYQVSPRGGFLTCEVK--ENRVIIGGTAKLFAKGEAYL 260 (262)
T ss_dssp SCCSTTHHHHHHHHHHHHTCSEEEEEECSSSCCEEEEEEE--TTEEEEEECEEEEEEEEEEC
T ss_pred CcchHHHHHHHHHHHHhCCCceEEEEecCCCCEEEEEEEE--CCEEEEEEEEEEEEEEEEEE
Confidence 9999999999999987776667899999999999999996 35899999999999999874
No 4
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-40 Score=280.04 Aligned_cols=204 Identities=21% Similarity=0.308 Sum_probs=163.4
Q ss_pred CCCCChHHHHHHHHHHhcCCCC-CCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEeCCCCCCCCCCcccH
Q 027494 1 MELCGHAALAAAHTLFSRGLVN-SNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEV 79 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~~~-~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~~~~~~~~ 79 (222)
+|||||||||+|++|++.+... ++.++|+|++|.+++++.. +. ++|.+|.+...+++....
T Consensus 77 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~~et~aG~l~v~~~~----------------~~--v~m~~p~~~~~~i~~~~~ 138 (300)
T 1ym5_A 77 LPFAGHPTIGSCKAFLEFTKNTTATSLVQECKIGAVPITINE----------------GL--ISFKAPMADYESISSEMI 138 (300)
T ss_dssp ESCCHHHHHHHHHHHHHHTTCSCCSEEEEEETTEEEEEEEET----------------TE--EEEECSCCEEEECCHHHH
T ss_pred cCcCCCcHHHHHHHHHHhCCCCCCceEEEEeCCeEEEEEEcC----------------CE--EEEecCCCCccccCcccH
Confidence 5899999999999999887654 4679999999999999852 23 679999876555543223
Q ss_pred HHHHHHhCCCce-eeeeecCCCceEEEEeCChhhhcccCCChhhHhcCCC---CceEEEEeeCCCC-CcccEEEeecCCC
Q 027494 80 SLILEALGVSSV-VDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPG---TRGIIVSGLAPPE-SGFDFYSRFFCPK 154 (222)
Q Consensus 80 ~~l~~algl~~~-~~~~~~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~---~~gv~v~~~~~~~-~~~~~~~R~f~p~ 154 (222)
+.+.++||+... .-..+++|+||++++++|.+.|.+++||++++.++++ ..|+++|+..... ++.++++|+|+|+
T Consensus 139 ~~~~~~lg~~~~~~~~~v~~G~ph~vv~v~~~~~l~~l~p~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~R~f~p~ 218 (300)
T 1ym5_A 139 ADYEKAIGLKFIKPPALLHTGPEWIVALVEDAETCFNANPNFAMLAHQTKQNDHVGIILAGPKKEAAIKNSYEMRAFAPV 218 (300)
T ss_dssp HHHHHHHTSCCSSCCEEEESSSEEEEEECSCHHHHHHCCCCHHHHHHHHHHHTCCEEEEEEECTTCSSTTEEEEEEEEGG
T ss_pred HHHHHhcCCCccCCcEEEEcCCCEEEEEECCHHHHHhCCCCHHHHHHHHhhcCCcEEEEEEecCCCCCCceEEEEecccc
Confidence 456678887431 1233788999999999999999999999999988752 3589988775321 3568999999999
Q ss_pred CCCCccCccccchhhhHHHHHhhhCC---ceEEEeec--cCCCeEEEEEEccC-C--CeEEEeeeEEEEEEEEEEC
Q 027494 155 FGVNEDPVCGSAYCALATYWSQKLGK---CDFVAYAA--SPRSGILNIHLDEQ-N--QRVQLRGKAITVMQGSLLV 222 (222)
Q Consensus 155 ~Gv~EDpatGSa~~ala~yl~~~~~~---~~~~~~Qg--~~r~g~l~v~~~~~-~--~~v~v~G~a~~v~~G~i~~ 222 (222)
.|++||||||||+||+|+||.++... ..+.++|| +.|+|.|+|+++.+ + ++|+|+|+|+++++|+|.+
T Consensus 219 ~Gv~EdpatGSaa~ala~~~~~~~~~~~~~~~~v~QG~~~~rgG~L~v~~~~~~~~~~~V~v~G~a~~v~~G~i~~ 294 (300)
T 1ym5_A 219 INVYEDPVCGSGSVALARYLQEVYKFEKTTDITISEGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKIKV 294 (300)
T ss_dssp GTEEEESSCHHHHHHHHHHHHHHHCCSSCEEEEEEECGGGTCCEEEEEEEEECTTSCEEEEEEECEEEEEEEEEEE
T ss_pred cCCCCCCcchHHHHHHHHHHHHhCCCCCceEEEEEcccccCCCeEEEEEEEccCCCcceEEEEEEEEEEEEEEEEE
Confidence 99999999999999999999876432 25788999 58999999999632 2 3799999999999999964
No 5
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=100.00 E-value=2.1e-39 Score=277.27 Aligned_cols=200 Identities=20% Similarity=0.273 Sum_probs=161.6
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEeCCCCCCCCCCcccHH
Q 027494 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVS 80 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~~~~~~~~~ 80 (222)
+|||||||||+|++|++. . .++.++|+|++|++++++.. ++ .....++|.+|.+.+.+... ..
T Consensus 89 ~~~CGhat~~~a~~l~~~-~-~~~~~~~eT~aG~l~v~~~~-----------~~--~~~~~v~m~~p~~~~~~~~~--~~ 151 (298)
T 1xub_A 89 LPFAGAPLLGTAIALGAH-T-DNHRLYLETQMGTIAFELER-----------QN--GSVIAASMDQPIPTWTALGR--DA 151 (298)
T ss_dssp ESCCHHHHHHHHHHHHTT-C-CCSEEEEEETTEEEEEEEEE-----------ET--TEEEEEEEECCCCEEEECSC--HH
T ss_pred cCcCchHHHHHHHHHHHh-C-CCCeEEEEeCCEEEEEEEEc-----------CC--CceEEEEEECCCCcccCCCC--hH
Confidence 589999999999999976 3 55679999999999999863 11 01135789999876655432 35
Q ss_pred HHHHHhCCCce--eeeeecCCCceEEEEeCChhhhcccCCChhhHhcCCCCceEEEEeeCCCCCcccEEEeecCCCCCCC
Q 027494 81 LILEALGVSSV--VDMKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPKFGVN 158 (222)
Q Consensus 81 ~l~~algl~~~--~~~~~~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~f~p~~Gv~ 158 (222)
.+.++||+... .-..+++|+||+++++++.+.|.++.||++++.+++. .+++++...+ + ++++|+|+|+.|++
T Consensus 152 ~~~~~lg~~~~~~~~~~v~~G~ph~vv~v~~~~~l~~l~p~~~~~~~~~~-~~v~~~~~~~---~-~~~~R~f~p~~Gv~ 226 (298)
T 1xub_A 152 ELLKALGISDSTFPIEIYHNGPRHVFVGLPSIDALSALHPDHRALSNFHD-MAINCFAGAG---R-RWRSRMFSPAYGVV 226 (298)
T ss_dssp HHHHHHTCSCCSSCCEEEESSSEEEEEECSSHHHHHHCCCCHHHHTTSCS-CEEEEEEEET---T-EEEEEEEBGGGTBS
T ss_pred HHHHhcCCCCcCCCeEEEECCCCEEEEEECCHHHHHhCCCCHHHHHhhhc-cEEEEEEcCC---C-CEEEEeCccccCCC
Confidence 67778887641 1133678999999999999999999999999999886 7888887642 2 49999999999999
Q ss_pred ccCccccchhhhHHHHHhh--h-CCceEEEeec--cCCCeEEEEEEccCCCe---EEEeeeEEEEEEEEEEC
Q 027494 159 EDPVCGSAYCALATYWSQK--L-GKCDFVAYAA--SPRSGILNIHLDEQNQR---VQLRGKAITVMQGSLLV 222 (222)
Q Consensus 159 EDpatGSa~~ala~yl~~~--~-~~~~~~~~Qg--~~r~g~l~v~~~~~~~~---v~v~G~a~~v~~G~i~~ 222 (222)
||||||||+||+++||.++ + ++..+.++|| +.|+|.|+|+++.++++ |+|+|+|+++++|+|.+
T Consensus 227 EdpatGSaa~Ala~~l~~~g~~~~~~~~~v~QG~~~~rgG~L~v~~~~~~~~~~~V~l~G~a~~v~~G~i~~ 298 (298)
T 1xub_A 227 EDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSLMFAKAEGRAEQLTRVEVSGNGVTFGRGTIVL 298 (298)
T ss_dssp SCSCCHHHHHHHHHHHHHTTSSCTTCCEEEEECGGGTCCEEEEEEEEEETTEEEEEEEEEEEEEEEEEEECC
T ss_pred CcchhhHHHHHHHHHHHHcCCCCCCCEEEEEcccccCCCEEEEEEEEcCCCcEEEEEEEEEEEEEEEEEEEC
Confidence 9999999999999999875 3 3347889998 68999999999643444 99999999999999865
No 6
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=100.00 E-value=4.6e-39 Score=276.20 Aligned_cols=204 Identities=22% Similarity=0.326 Sum_probs=158.1
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCC-cEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEeCCCCCCC-CCCccc
Q 027494 1 MELCGHAALAAAHTLFSRGLVNSN-TIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTA-DFNFSE 78 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~~~~~-~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~-~~~~~~ 78 (222)
+|||||||||+|+ |++.+...++ .++|+|++|.+++++.. .++ ...++|.+|.+.+. +++...
T Consensus 79 ~~~CGh~t~~~a~-l~~~g~~~~~~~~~~et~aG~l~v~~~~----------~~~----~~~v~~~~p~~~~~~~i~~~~ 143 (307)
T 1qya_A 79 VPICGHATVAAHY-VRAKVLGLGNCTIWQTSLAGKHRVTIEK----------HND----DYRISLEQGTPGFEPPLEGET 143 (307)
T ss_dssp ECC--CHHHHHHH-HHHHHHTCCSEEEEEECC--CEEEEEEE----------ETT----EEEEEEECCCCEECCCBCTHH
T ss_pred eCCCchHHHHHHH-HHHhCCCCCCceEEEEcCCeEEEEEEEc----------cCC----cceEEEecCCCcccCcCCccC
Confidence 5899999999999 9887655544 69999999999999853 011 12477899987665 444212
Q ss_pred HHHHHHHhCCCceee-------eeecCCCceEEEEeCChhhhcccCCChhhHhcCCC---CceEEEEeeCCCCCcccEEE
Q 027494 79 VSLILEALGVSSVVD-------MKITTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPG---TRGIIVSGLAPPESGFDFYS 148 (222)
Q Consensus 79 ~~~l~~algl~~~~~-------~~~~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~---~~gv~v~~~~~~~~~~~~~~ 148 (222)
...+++++|+.+ .+ ..+++|+||+++++++.+.|.+++||++.+..+++ ..++++|+.. .++.++++
T Consensus 144 ~~~~~~~lg~~~-~~~~~~~~~~~v~~G~ph~vv~v~~~~~l~~l~p~~~~~~~~~~~~~~~~v~v~~~~--~~~~~~~~ 220 (307)
T 1qya_A 144 RAAIINALHLTE-DDILPGLPIQVATTGHSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIR--PGKNETDG 220 (307)
T ss_dssp HHHHHHHTTCCG-GGBCTTCCBEEEESSSCEEEEEBCTTSCGGGCCCCHHHHHHHHHHHTCCCEEEEEEC--TTSSEEEE
T ss_pred hHHHHHHcCCCH-HHhcccCCcEEEeCCCCEEEEEECCHHHHhhCCCCHHHHHHHHhhcCCcEEEEEEEc--CCCCeEEE
Confidence 356667888865 22 23689999999999999999999999999988752 4678888773 13568999
Q ss_pred eecCCCCCCCccCccccchhhhHHHHHhh--hC----CceEEEeec--cCCCeEEEEEEcc-CC--CeEEEeeeEEEEEE
Q 027494 149 RFFCPKFGVNEDPVCGSAYCALATYWSQK--LG----KCDFVAYAA--SPRSGILNIHLDE-QN--QRVQLRGKAITVMQ 217 (222)
Q Consensus 149 R~f~p~~Gv~EDpatGSa~~ala~yl~~~--~~----~~~~~~~Qg--~~r~g~l~v~~~~-~~--~~v~v~G~a~~v~~ 217 (222)
|+|+|+.|++||||||||+||+++||.++ ++ +..+.++|| +.|+|.|+|+|+. ++ ++|+|+|+|+++++
T Consensus 221 R~f~p~~Gv~EdpacGSaa~ala~~~~~~g~~~~~~~~~~~~v~Qg~~~~rgG~l~v~~~~~~~~~~~V~l~G~a~~v~~ 300 (307)
T 1qya_A 221 RMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAVILFH 300 (307)
T ss_dssp CEEEGGGTEEEESSCHHHHHHHHHHHHHTTCSCCCSSEEEEEEEECGGGTCCEEEEEEEEEETTEEEEEEEEECEEEEEE
T ss_pred EecCCcCCCCCCCCcccchHHHHHHHHHcCccCcCCCcceEEEEcccccCCCeEEEEEEEecCCCeeEEEEEEEEEEEEE
Confidence 99999999999999999999999999864 33 226889999 6899999999962 22 37999999999999
Q ss_pred EEEEC
Q 027494 218 GSLLV 222 (222)
Q Consensus 218 G~i~~ 222 (222)
|+|.+
T Consensus 301 G~l~~ 305 (307)
T 1qya_A 301 AEWAI 305 (307)
T ss_dssp EECSS
T ss_pred EEEEE
Confidence 99854
No 7
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2
Probab=100.00 E-value=6.6e-36 Score=254.45 Aligned_cols=196 Identities=20% Similarity=0.205 Sum_probs=150.8
Q ss_pred CCCCChHHHHHHHHHH-hcCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcce-eEEEEeCCCCCCC-CCCcc
Q 027494 1 MELCGHAALAAAHTLF-SRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQEC-YFIELDFPAAPTA-DFNFS 77 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~-~~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~-~~v~~~~p~~~~~-~~~~~ 77 (222)
+|||||||||+|++|+ +.+...++.++|+|++|.+++++.. ++ .. +.+.| +|.+.+. +++..
T Consensus 72 ~~~CGh~t~~~a~~l~~~~g~~~~~~~~~et~aG~~~v~~~~-----------~~---~~~~~v~m-~~~p~~~~~~~~~ 136 (288)
T 1u0k_A 72 LPFAGHPLLGAAALLHHLRGGDNEQHWTLHLASKSVALRSVR-----------AG---SGFYAEMD-QGRAEFGATPDAG 136 (288)
T ss_dssp CCSCCTHHHHHHHHHHHHHCCSSCEEEEEECSSCEEEEEEEE-----------ET---TEEEEEEE-EEECEECCCCCHH
T ss_pred eCcCchHHHHHHHHHHHhcCCCCCceEEEEeCCeEEEEEEEe-----------CC---CceeeEEE-cCCCCccccCCcc
Confidence 6899999999999999 8887666679999999999999862 11 22 34677 5655442 33311
Q ss_pred cHHHHHHHhCCCceeee------eecCCCceEEEEeCChhhhcccC--CChhhHhcCCCCceEE-EEeeCCCCCcccEEE
Q 027494 78 EVSLILEALGVSSVVDM------KITTTCEDIFVVLPSAKSVTDLQ--PKFDEMKKCPGTRGII-VSGLAPPESGFDFYS 148 (222)
Q Consensus 78 ~~~~l~~algl~~~~~~------~~~~G~~~lvv~v~~~~~l~~~~--pd~~~l~~~~~~~gv~-v~~~~~~~~~~~~~~ 148 (222)
...++..++|+.+ .++ .+++|+||++++++ .+.|.+++ ||++ .++.. .|++ +|...+ .++++
T Consensus 137 ~~~~~~~~lg~~~-~~~~~~~~~~v~~G~p~~vv~v~-~~~l~~l~~~p~~~--~~~~~-~g~~~~~~~~~----~~~~~ 207 (288)
T 1u0k_A 137 TCRWFAEAFSLSA-NDLSGHPPRVVSTGLPYLLLPVT-AEALGRARQVNDLQ--EALDK-LGAAFVYLLDV----DGREG 207 (288)
T ss_dssp HHHHHHHHTTCCG-GGBCSSCCEEEESSSCEEEEEBC-HHHHHTCCCCSCCH--HHHHH-HTCSEEEEEET----TTTEE
T ss_pred cHHHHHHHhCCCh-HHhccCCcEEEeCCCCeEEEEec-HHHHhhhhcCCChh--Hhhcc-cCceEEEEcCC----CeEEE
Confidence 1345667888865 332 36899999999999 88999999 9999 33431 3444 465531 27999
Q ss_pred eecCCCCCCCccCccccchhhhHHHHHhhh--C-CceEEEeecc--CCCeEEEEEEccCCCeEEEeeeEEEEEEEEEEC
Q 027494 149 RFFCPKFGVNEDPVCGSAYCALATYWSQKL--G-KCDFVAYAAS--PRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222 (222)
Q Consensus 149 R~f~p~~Gv~EDpatGSa~~ala~yl~~~~--~-~~~~~~~Qg~--~r~g~l~v~~~~~~~~v~v~G~a~~v~~G~i~~ 222 (222)
|+|+ +.|++||||||||+||+++||.++. + +..+.++||+ +|+|.|+++++.+ +.|+|+|+|+++++|+|.+
T Consensus 208 R~f~-~~Gv~Ed~acGSga~ala~~~~~~g~~~~~~~~~v~Qg~~~~rgg~l~v~~~~~-~~v~l~G~a~~v~~G~l~~ 284 (288)
T 1u0k_A 208 RTWD-NLGLVEDVATGSAAGPVAAYLVEYGLAARGEPFVLHQGRFLERPSRLDVQVATD-GSVRVGGHVQLLARAELLT 284 (288)
T ss_dssp ECBC-TTSCSBCSCCHHHHHHHHHHHHHTTSSCTTSCEEEEECGGGTCCEEEEEEECSS-SEEEEEEEEEEEEEEEECS
T ss_pred Eecc-CCCCcCcccchHHHHHHHHHHHHcCCCCCCcEEEEECCCeeCCCcEEEEEEEcC-CcEEEEEEEEEEEEEEEEE
Confidence 9999 7799999999999999999998653 3 2468899995 8999999999642 3599999999999999864
No 8
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Probab=100.00 E-value=4.6e-35 Score=247.51 Aligned_cols=197 Identities=17% Similarity=0.240 Sum_probs=143.7
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEeCCCCCCCC--CCccc
Q 027494 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTAD--FNFSE 78 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~~--~~~~~ 78 (222)
++||||||||+|++|++.+...++.++|+|++|.+++++.. + +. ++|.+|.+.+.+ ++..
T Consensus 70 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~et~aG~~~v~~~~-----------~----~~--v~v~~~~p~~~~~~~~~~- 131 (274)
T 2gke_A 70 VSQCGNGARCFARFVTLKGLTNKKDISVSTQKGNMVLTVKD-----------D----NQ--IRVNMGEPIWEPAKIPFT- 131 (274)
T ss_dssp ESCCHHHHHHHHHHHHHTTSCCCSEEEEECSSCEEEEEECT-----------T----SC--EEEECCCCBCCGGGTTCC-
T ss_pred HHhCcChHHHHHHHHHHhCCCCCceEEEEeCCceEEEEEeC-----------C----Ce--EEEECCCcccccccCccc-
Confidence 58999999999999999887666789999999999999853 2 24 445555543322 2210
Q ss_pred HHHHHHHhCCCc----eeeeeecCCCceEEEEeCChhh--hcccCCChhhHhcCCCCceEEEEeeCCCCCcccEEEeecC
Q 027494 79 VSLILEALGVSS----VVDMKITTTCEDIFVVLPSAKS--VTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFC 152 (222)
Q Consensus 79 ~~~l~~algl~~----~~~~~~~~G~~~lvv~v~~~~~--l~~~~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~f~ 152 (222)
.+.++.++++.. +.-..+++|++|+++++++.+. |.++.|+++.+..+++..+++++... ++.++++|+|+
T Consensus 132 ~~~~~~~l~l~~~~~~~~~~~v~~G~~h~vv~v~~~~~~~l~~~~~~~~~~~~~p~~~~v~~~~~~---~~~~~~~R~f~ 208 (274)
T 2gke_A 132 ANKFEKNYILRTDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERFPERVNAGFMQII---NKEHIKLRVYE 208 (274)
T ss_dssp CSSCCSSEEEECSSCEEEEEEEESSSEEEEEECSCTTTSCHHHHHHHHHTCTTCTTCCEEEEEEEE---ETTEEEEEEEE
T ss_pred cccccceeEEEeCCcEEEEEEEECCcCEEEEEeCCCChhhHHHHhHHHhhCccCCCCcEEEEEEEe---CCCEEEEEEEC
Confidence 011222344321 1122368899999999999877 88889999888888754566665543 24579999999
Q ss_pred CCCCCCccCccccchhhhHHHHHhhhCCceEEEeeccCCCeEEEEEEccCCCeEEEeeeEEEEEEEEEEC
Q 027494 153 PKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222 (222)
Q Consensus 153 p~~Gv~EDpatGSa~~ala~yl~~~~~~~~~~~~Qg~~r~g~l~v~~~~~~~~v~v~G~a~~v~~G~i~~ 222 (222)
| |++||||||||+||+++|+.+ ++.... ..|.+.++|.|+|+++.++++|+|+|+|+++++|+|.+
T Consensus 209 ~--Gv~Ed~acGSg~~A~a~~~~~-~g~~~~-~~~v~~~gG~l~v~~~~~~~~v~l~G~a~~v~~G~i~~ 274 (274)
T 2gke_A 209 R--GAGETQACGSGACAAVAVGIM-QGLLNN-NVQVDLPGGSLMIEWNGVGHPLYMTGEATHIYDGFITL 274 (274)
T ss_dssp T--TTEECSCCHHHHHHHHHHHHH-TTSSCS-EEEEEETTEEEEEEECCTTSCEEEEECCEEEEEEECCC
T ss_pred C--CCCCCCCchHHHHHHHHHHHH-hCCCCC-cEEEEcCCCEEEEEEEcCCCeEEEEeCcEEEEEEEEeC
Confidence 9 688999999999999998764 443322 24555589999999964333799999999999999864
No 9
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str}
Probab=100.00 E-value=6.9e-33 Score=237.92 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=140.5
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCccee---EEEEeCCCCCCCCCCcc
Q 027494 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECY---FIELDFPAAPTADFNFS 77 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~---~v~~~~p~~~~~~~~~~ 77 (222)
+|||||||||+|++|++.+...++.++|+|++|.+++++.. .+ +.+ ++.|..|.....+++..
T Consensus 93 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~eT~aG~l~v~~~~----------~~----~~v~~v~v~~~~P~~~~~~~~~~ 158 (308)
T 2otn_A 93 GKSCGNGLRCVAKYAYEHKLVEDTVFTIETLAGIVTAEVTV----------EE----GKVTLAKIDMGAPRLTRAEIPML 158 (308)
T ss_dssp ECCTTTTHHHHHHHHHHTTSCSSSEEEEEETTEEEEEEEEE----------SS----SSEEEEEEEEECCBCSGGGTTCC
T ss_pred HHhCcChHHHHHHHHHHcCCCCCCeEEEEeCCeEEEEEEEe----------CC----CEEEEEEEECCCceecccceeee
Confidence 48999999999999999887666789999999999999842 12 233 56666665432222210
Q ss_pred cHH--H---HHHHhCCCceeeeeecCCCceEEEEeCChh--hhcccCCChhhHhcCCCCceEEEEeeCCCCCcccEEEee
Q 027494 78 EVS--L---ILEALGVSSVVDMKITTTCEDIFVVLPSAK--SVTDLQPKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRF 150 (222)
Q Consensus 78 ~~~--~---l~~algl~~~~~~~~~~G~~~lvv~v~~~~--~l~~~~pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~ 150 (222)
... . +.-.++...+.-..+++|+||+++++++.+ .|.+++|+++.+..++...+++++... ++.++++|+
T Consensus 159 ~~~~~~~~~l~i~~~~~~~~~~~v~~G~ph~vv~v~~~~~~~l~~l~p~~~~~~~~~~~~nv~~v~v~---~~~~~~~R~ 235 (308)
T 2otn_A 159 GEGETPFIRENFLYNNHRYAFTAVSMGNPHAVIFVDDVEQAPLTTLGPVLETHEMFPERVNVEFIEIL---NEEEMNFRV 235 (308)
T ss_dssp SSCCSSSEEEEEEETTEEEEEEEEESSSEEEEEECSCGGGSCTTTHHHHHHTCTTCTTCCEEEEEEEE---ETTEEEEEE
T ss_pred ccccccceeEEEEECCEEEEEEEEeCCCCcEEEEcCCcCHHHHHHHHHHHhhCccCCCCeeEEEEEEe---CCCeEEEEE
Confidence 000 0 000111111111236889999999999975 568899999998888753344433322 245799999
Q ss_pred cCCCCCCCccCccccchhhhHHHHHhhhCCc----eEEEeeccCCCeEEEEEEccCCCeEEEeeeEEEEEEEEEEC
Q 027494 151 FCPKFGVNEDPVCGSAYCALATYWSQKLGKC----DFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222 (222)
Q Consensus 151 f~p~~Gv~EDpatGSa~~ala~yl~~~~~~~----~~~~~Qg~~r~g~l~v~~~~~~~~v~v~G~a~~v~~G~i~~ 222 (222)
|+| |++||||||||+||+++||.+ ++.. .+.+.| |+|.|+|+++. +++|+|+|+|+++++|+|.+
T Consensus 236 fe~--Gv~Ed~acGSg~~A~a~~~~~-~g~~~~~~~~~v~~---rgG~L~v~~~~-~~~V~l~G~a~~v~~G~l~~ 304 (308)
T 2otn_A 236 WER--GSGVTQACGTGACAAVVASIL-NGKMERGKEITVHL---AGGDLMIAWTE-EGNVLMKGPAEVICRGVYEY 304 (308)
T ss_dssp ECS--SSCBCSCCHHHHHHHHHHHHH-TTSSCTTCCEEEEC---SSCEEEEEECT-TSCEEEEEECEEEEEEEEEE
T ss_pred eCC--CCCCCCCCHHHHHHHHHHHHH-hCCCCCCcEEEEEe---CCceEEEEEEc-CCcEEEEcCcEEEEEEEEEe
Confidence 999 678999999999999999985 4322 444555 99999999963 34799999999999999864
No 10
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis}
Probab=99.97 E-value=8.8e-31 Score=222.03 Aligned_cols=192 Identities=18% Similarity=0.229 Sum_probs=138.5
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEeCCCCCCCCCCcccHH
Q 027494 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSEVS 80 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~~~~~~~~~ 80 (222)
++||||||+|+|++|++.+...+++++++|.+|.+++++.. .++. ...+++.|..|..... .. .
T Consensus 85 aemCGNg~Rc~a~~l~~~g~~~~~~~~ieT~aG~~~v~~~~----------~~~~-~~~V~VdMg~P~~~~~--~~--~- 148 (290)
T 3fve_A 85 AQMCGNGVRVFAHYLRASGLEVRDEFVVGSLAGPRPVTCHH----------VEAA-YADVSVDMGKANRLGA--GE--A- 148 (290)
T ss_dssp CCTTCTTHHHHHHHHHHTTSCCCSEEEEECTTCCEEEEEEE----------ECSS-EEEEEEECCCCEEEEE--EE--B-
T ss_pred cccccchHHHHHHHHHHhCCCCCceEEEEeCCeEEEEEEEc----------CCCc-eeEEEEECCCceeCCC--ce--E-
Confidence 47999999999999999887666789999999999999974 1110 0245566655543221 00 0
Q ss_pred HHHHHhCCCceeeeeecCCCceEEEEeCChh--hhc--ccC--CChhhHhcCCCCceEEEEeeCCCCCcccEEEeecCCC
Q 027494 81 LILEALGVSSVVDMKITTTCEDIFVVLPSAK--SVT--DLQ--PKFDEMKKCPGTRGIIVSGLAPPESGFDFYSRFFCPK 154 (222)
Q Consensus 81 ~l~~algl~~~~~~~~~~G~~~lvv~v~~~~--~l~--~~~--pd~~~l~~~~~~~gv~v~~~~~~~~~~~~~~R~f~p~ 154 (222)
.+ -+ ..+.-..+++|+||+|+++++.+ .+. .+. |.++. ..+++ |+||..... .++.++++|+|+|
T Consensus 149 ~~---~~-~~~~~~~vs~GnPH~V~~v~d~~~~~~~~~~~g~~p~~~~-~~fP~--g~NV~fv~v-~~~~~i~~Rv~ER- 219 (290)
T 3fve_A 149 VV---GG-RRFHGLAVDVGNPHLACVDSQLTVDGLAALDVGAPVSFDG-AQFPD--GVNVEVLTA-PVDGAVWMRVHER- 219 (290)
T ss_dssp C---------CEEEEEESSSEEEEEEETTCCTTTTCSCCCC--CCBCT-TTCTT--CCEEEEEEC-CBTTEEEEEEEBT-
T ss_pred Ee---cC-ceeeEEEEECCCCeEEEEecCCcccccchhhcccccccCc-ccCCC--CeEEEEEEE-cCCCeEEEEEEeC-
Confidence 00 01 11123457899999999999876 553 344 77754 55654 777733321 2356899999999
Q ss_pred CCCCccCccccchhhhHHHHHhhhCCceEEEeeccCCCeEEEEEEccCCCeEEEeeeEEEEEEEEEE
Q 027494 155 FGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLL 221 (222)
Q Consensus 155 ~Gv~EDpatGSa~~ala~yl~~~~~~~~~~~~Qg~~r~g~l~v~~~~~~~~v~v~G~a~~v~~G~i~ 221 (222)
|++||+||||++||++.||.++++... ...|.+.|+|.|+|+|+ +++|+++|+|+.|++|+|.
T Consensus 220 -GvgeTlaCGTGacA~a~~~~~~~g~~~-~~v~v~~~GG~L~i~~~--~~~v~l~G~A~~v~~G~~~ 282 (290)
T 3fve_A 220 -GVGETRSCGTGTVAAAVAALAAVGSPT-GTLTVHVPGGEVVVTVT--DATSFLRGPSVLVARGDLA 282 (290)
T ss_dssp -TTBSCSCCHHHHHHHHHHHHHHTTCSS-EEEEEEETTEEEEEEEC--SSCEEEEEEEEEEEEEEEC
T ss_pred -CCccCcCccHHHHHHHHHHHHHcCCCC-ceEEEEcCCCEEEEEEe--CCEEEEEeCcEEEEEEEEE
Confidence 778999999999999999976556543 34677779999999996 4689999999999999985
No 11
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa}
Probab=99.96 E-value=7.1e-29 Score=213.73 Aligned_cols=188 Identities=18% Similarity=0.191 Sum_probs=131.2
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEe-CCCCCCCCCCcccH
Q 027494 1 MELCGHAALAAAHTLFSRGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELD-FPAAPTADFNFSEV 79 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~-~p~~~~~~~~~~~~ 79 (222)
+|||||||||+|++|++.+...++.++|+|++|.+++++.. + +. ++|. +|.....+ +. ..
T Consensus 87 ~~~CGh~t~~~a~~l~~~g~~~~~~~~~eT~aG~v~v~~~~-----------~----~~--v~m~~~P~~~~~~-~~-~~ 147 (318)
T 2azp_A 87 LGMCGHGTIGLVASLAHLGRIGPGVHRIETPVGEVEATLHE-----------D----GS--VSVRNVPAYRYRR-QV-SV 147 (318)
T ss_dssp CSCCHHHHHHHHHHHHHTTSCCSEEEEEECTTCCEEEEECT-----------T----SC--EEEECSCBEEEEE-EE-EE
T ss_pred cCcCccHHHHHHHHHHHcCCCCCCEEEEEeCcEEEEEEEec-----------C----Ce--EEEEecCcccccC-Cc-eE
Confidence 58999999999999999887666679999999999999853 2 23 4677 77643211 10 00
Q ss_pred HHHHHHhCCCceeeeeecCCCceEEEEeCChhhhcccCC-ChhhHhcC---------------CC---CceEEEEeeCCC
Q 027494 80 SLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQP-KFDEMKKC---------------PG---TRGIIVSGLAPP 140 (222)
Q Consensus 80 ~~l~~algl~~~~~~~~~~G~~~lvv~v~~~~~l~~~~p-d~~~l~~~---------------~~---~~gv~v~~~~~~ 140 (222)
. ...+| .+....+++|++|+++++++. ++.| |...+.++ ++ ..+++++..
T Consensus 148 -~-~~~lg--~~~~~~v~~G~~~~vv~v~~~----~l~p~d~~~l~~l~~~i~~~~~~~~~~~p~~~nv~~v~v~~~--- 216 (318)
T 2azp_A 148 -E-VPGIG--RVSGDIAWGGNWFFLVAGHGQ----RLAGDNLDALTAYTVAVQQALDDQDIRGEDGGAIDHIELFAD--- 216 (318)
T ss_dssp -E-ETTTE--EEEEEEEESSSEEEEEESCCC----CCSTTCHHHHHHHHHHHHHHHHHTTCBCTTSCBCCEEEEEEE---
T ss_pred -e-cccCC--ceeEEEEeCCceEEEEECCCc----ccccccHHHHHHHHHHHHHHHhhcCCCcCCcCceEEEEEEeC---
Confidence 0 11233 211123678999999999864 5667 65555433 11 246677753
Q ss_pred CCcccEEEeec--CCCCCCCccCccccchhhhHHHHHhh--hCCceEEEeeccCCCe--EEEEEE-c-cCCCeE--EEee
Q 027494 141 ESGFDFYSRFF--CPKFGVNEDPVCGSAYCALATYWSQK--LGKCDFVAYAASPRSG--ILNIHL-D-EQNQRV--QLRG 210 (222)
Q Consensus 141 ~~~~~~~~R~f--~p~~Gv~EDpatGSa~~ala~yl~~~--~~~~~~~~~Qg~~r~g--~l~v~~-~-~~~~~v--~v~G 210 (222)
+.++++|+| +|..|++| ||||||+||+++||.++ ++... ...|++.+++ ++++++ + .+++.| +|+|
T Consensus 217 --~~~~~~R~fv~~p~~Gv~E-~acGSg~~A~a~~l~~~g~~~~~~-~~~q~~~~G~~~~l~v~~~~~~~~~~V~~~i~G 292 (318)
T 2azp_A 217 --DPHADSRNFVLCPGKAYDR-SPCGTGTSAKLACLAADGKLLPGQ-PWRQASVIGSQFEGRYEWLDGQPGGPIVPTIRG 292 (318)
T ss_dssp --ETTEEEEEEEECTTSCBCS-SCCHHHHHHHHHHHHHTTSSCTTC-CEEEECTTSCEEEEEEEEGGGCTTSCEEEEEEE
T ss_pred --CCCccEEEEEEeCCCcccc-CCCHHHHHHHHHHHHHcCCCCCCC-eEEEEEecCCCEEEEEEEEecccCCEEEEEEEE
Confidence 246999999 88889999 99999999999999865 33221 2378865554 566765 1 134567 9999
Q ss_pred eEEEEEEEEEEC
Q 027494 211 KAITVMQGSLLV 222 (222)
Q Consensus 211 ~a~~v~~G~i~~ 222 (222)
+|+++++|+|.+
T Consensus 293 ~A~~v~~G~l~~ 304 (318)
T 2azp_A 293 RAHVSAEATLLL 304 (318)
T ss_dssp CEEEEEEEEEEE
T ss_pred EEEEEEEEEEEe
Confidence 999999999864
No 12
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*
Probab=99.95 E-value=9.2e-28 Score=204.93 Aligned_cols=199 Identities=18% Similarity=0.245 Sum_probs=136.9
Q ss_pred CCCCChHHHHHHHHHHh-cCCCCCCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEeCCCCCCCCCCccc-
Q 027494 1 MELCGHAALAAAHTLFS-RGLVNSNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELDFPAAPTADFNFSE- 78 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~-~~~~~~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~~p~~~~~~~~~~~- 78 (222)
.+||||+|+|+|++|++ .+...+++++|+|.+|.+++++.. + +.+.+.|..|.....+++...
T Consensus 96 aemCGNGtRc~A~~l~~~~g~~~~~~~~ieT~aG~l~v~~~~-----------d----g~V~VdMg~P~f~~~~iP~~~~ 160 (317)
T 3ejx_A 96 PEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQD-----------D----GQVKVDMGTPILKAQDVPTKLS 160 (317)
T ss_dssp CSCCHHHHHHHHHHHHHHTTCCSCCBCCEEETTEEEEEEECT-----------T----SCEEEECCCCBCCGGGTTCCSC
T ss_pred eccCccHHHHHHHHHHHhcCCCCCceEEEEeCCeEEEEEEcC-----------C----CEEEEECCCCccCccccccccc
Confidence 47999999999999998 676556679999999999999974 3 357788888877655444210
Q ss_pred ----HHHHHHHhCC--CceeeeeecCCCceEEEEeC------Chh--hhcccCCChhhHhcCCCCceEEE-EeeCCCCCc
Q 027494 79 ----VSLILEALGV--SSVVDMKITTTCEDIFVVLP------SAK--SVTDLQPKFDEMKKCPGTRGIIV-SGLAPPESG 143 (222)
Q Consensus 79 ----~~~l~~algl--~~~~~~~~~~G~~~lvv~v~------~~~--~l~~~~pd~~~l~~~~~~~gv~v-~~~~~~~~~ 143 (222)
...+...+.+ ..+.-..+++||||+|+.++ +.+ .|..+.|.++....|++ |+|| |... .++
T Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~VsmGNPH~V~fvd~~~~~~dv~~~~l~~~Gp~ie~h~~FP~--g~NV~Fv~v--~~~ 236 (317)
T 3ejx_A 161 GNKGEAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPNLKVDDLNLPEIGPKFEHHEMFPA--RTNTEFVEV--LSR 236 (317)
T ss_dssp CSBTTBCCSEEEEETTEEEEEEEEESSSEEEEESSBTTCCCCCGGGSCHHHHHHHHHTCTTCTT--CCEEEEEEE--EET
T ss_pred cccccceeeEEEEeCCeEEEEEEEccCCCeEEEEEcCcccccCccccchhhhhhhhccCCcCCC--CcEEEEEEE--ccC
Confidence 0000000100 11122347899999999998 543 34555566665556665 6666 3332 135
Q ss_pred ccEEEeecCCCCCCCccCccccchhhhHHHHHhhhCCceEEEeeccCCCeEEEEEEccCCCeEEEeeeEEEEEEEEEEC
Q 027494 144 FDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLDEQNQRVQLRGKAITVMQGSLLV 222 (222)
Q Consensus 144 ~~~~~R~f~p~~Gv~EDpatGSa~~ala~yl~~~~~~~~~~~~Qg~~r~g~l~v~~~~~~~~v~v~G~a~~v~~G~i~~ 222 (222)
+.+++|+|++ |++|+.||||++||.+..... ++... ...++..++|.|.|+|+.+++.|++.|+|+.|++|+-.+
T Consensus 237 ~~i~~Rv~ER--GvGeTlACGTGacAaavaa~~-~g~~~-~~v~V~~pGG~L~I~~~~~~~~v~mtGpA~~Vf~G~~~~ 311 (317)
T 3ejx_A 237 SHLKMRVWER--GAGATLACGTGACALVVAAVL-EGRAD-RKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALL 311 (317)
T ss_dssp TEEEEEEEBT--TTBSCSCCHHHHHHHHHHHHH-TTSSC-SEEEEEETTEEEEEEECTTTSCEEEEECCEEEEEEEEEC
T ss_pred CEEEEEEEEC--CCCcccCchHHHHHHHHHHHH-hCCCC-CeEEEECCCCEEEEEEECCCCeEEEEeCCEEEEEEEEeh
Confidence 6899999999 667999999999997644332 33221 012334599999999975556899999999999998754
No 13
>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles doubl barrel, in EACH of which AN alpha helix is sandwiched, PSI; 2.80A {Brucella melitensis} SCOP: d.21.1.3
Probab=99.84 E-value=2.9e-20 Score=161.98 Aligned_cols=198 Identities=14% Similarity=0.166 Sum_probs=114.0
Q ss_pred CCCCChHHHHHHHHHHhcCCCC----CCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEe-CCCCCC-CCC
Q 027494 1 MELCGHAALAAAHTLFSRGLVN----SNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELD-FPAAPT-ADF 74 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~~~----~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~-~p~~~~-~~~ 74 (222)
+|||||+|+|++++|.+.+... +..++++|++|.+++++.. .+| ....++|. .|.+.. ..+
T Consensus 87 ~~mCGhgt~~~a~~l~e~Glv~~~~~~~~~~ieT~aG~v~v~v~~----------~~g---~v~~v~~~~~P~f~~~~~i 153 (350)
T 1tm0_A 87 PPMSGSNSICVSTVLLDSGIIAMQEPVTHMVLEAPGGIIEVEAEC----------RNG---KAERISVRNVPSFADRLDA 153 (350)
T ss_dssp CSCCHHHHHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEEE----------CSS---SEEEEEEECCCBEECCCSE
T ss_pred cccccchHHHHHHHHHHcCCCCCCCCCcEEEEECCCeEEEEEEEe----------CCC---cEEEEEEeccccccccccC
Confidence 5899999999999999988765 3569999999999999852 122 21146664 343211 111
Q ss_pred CcccHHHHHHHhCCCceeeeeecCCCceEEEEeCChhhhcccCC-ChhhHhcC------------------C---CCceE
Q 027494 75 NFSEVSLILEALGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQP-KFDEMKKC------------------P---GTRGI 132 (222)
Q Consensus 75 ~~~~~~~l~~algl~~~~~~~~~~G~~~lvv~v~~~~~l~~~~p-d~~~l~~~------------------~---~~~gv 132 (222)
+. +. ..+| .+..-.+++|++|+++++.+... .+.+ |...+.++ + +..++
T Consensus 154 ~~-~~----~~lg--~~~~~i~~~G~~~~iv~~~~~g~--~v~~~~~~~l~~~g~~i~~~~~~~~~~~hp~p~~~nv~~v 224 (350)
T 1tm0_A 154 PL-DV----TGLG--TIMVDTAYGGDSFVIVDAAQIGM--KIEPGQARELAEIGVKITKAANEQLGFRHPERDWRHISFC 224 (350)
T ss_dssp EE-EC----SSSS--EEEEEEEESSSEEEEEEGGGTC-----CHHHHHHHHHHHHHHHCC------CCBTTBSCCSCCEE
T ss_pred ce-ec----CCcC--cEEEEEEECCEEEEEEEeecccC--ccCchhHHHHHHHHHHHHHHHHhhcccCCCCcCCcceeEE
Confidence 10 00 0112 21111256799999999875431 2222 22222211 1 12345
Q ss_pred EEEeeCCCCCcccEEEeec--CCCCCCCccCccccchhhhHHHHHhh--hC-CceEEEeeccCC--CeEEEEEEccCC--
Q 027494 133 IVSGLAPPESGFDFYSRFF--CPKFGVNEDPVCGSAYCALATYWSQK--LG-KCDFVAYAASPR--SGILNIHLDEQN-- 203 (222)
Q Consensus 133 ~v~~~~~~~~~~~~~~R~f--~p~~Gv~EDpatGSa~~ala~yl~~~--~~-~~~~~~~Qg~~r--~g~l~v~~~~~~-- 203 (222)
.++.... ..+.+++.|+| .|...++|+| ||||+||+++|+.++ +. ...+..+|.++| .|++.+..+.++
T Consensus 225 ~~~~~~~-~~~~~~~~r~~rv~~~G~~~etp-cGTga~A~aa~l~~~G~l~~g~~~~~e~~iG~~f~g~i~~~~~~~~~~ 302 (350)
T 1tm0_A 225 QITEPVT-REGDVLTGVNTVAIRPAKFDRSP-TGTGCSARMAVLHAKGQMKAGERFIGKSVLGTEFHCRLDKVLELGGKP 302 (350)
T ss_dssp EEECCCE-ESSSEEEECEEC----------C-CHHHHHHHHHHHHHTTSCCTTCEEEECCC--CCEEEEEEEEEEETTEE
T ss_pred EEEecCC-CcccccceEEEEEeCCCCcCCCC-CHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCCCEEEEEEEEEEECCee
Confidence 5554321 11225777776 3443347886 999999999998754 22 235777776777 888887543222
Q ss_pred C-eEEEeeeEEEEEEEEEEC
Q 027494 204 Q-RVQLRGKAITVMQGSLLV 222 (222)
Q Consensus 204 ~-~v~v~G~a~~v~~G~i~~ 222 (222)
. .++|+|+|+++.+|+|.|
T Consensus 303 ~v~~~I~G~A~~~~~~~~~~ 322 (350)
T 1tm0_A 303 AISPIISGRAWVTGTSQLML 322 (350)
T ss_dssp EEEEEEEECEEEEEEEEECC
T ss_pred EEEEEEeEEEEEEEEEEEEE
Confidence 1 589999999999999864
No 14
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A
Probab=99.80 E-value=1.2e-19 Score=160.83 Aligned_cols=199 Identities=18% Similarity=0.206 Sum_probs=110.8
Q ss_pred CCCCChHHHHHHHHHHhcCC--CC----CCcEEEEeceeeEEEEEecCcccccCCCCCCCCCcceeEEEEe-CCCCCC-C
Q 027494 1 MELCGHAALAAAHTLFSRGL--VN----SNTIEFTTLSGILIAKKVPDVKAMNDSNSQNGEAQECYFIELD-FPAAPT-A 72 (222)
Q Consensus 1 i~~cGH~tlaaa~~l~~~~~--~~----~~~~~~~t~~G~v~v~~~~~~~~~~~~~~~~g~~~~~~~v~~~-~p~~~~-~ 72 (222)
+|||||||+|++++|.+.+. .. +..++|||++|++++++.. .+|.......++|. .|.+.. .
T Consensus 127 ~~mCGHgTi~~a~~L~e~Gl~~v~~~~~~~~i~lET~aGlV~v~v~~----------~dg~~~~v~~V~v~~~P~f~~~~ 196 (414)
T 1w61_A 127 LNMCGHNSIAAVTAAVETGIVSVPAKATNVPVVLDTPAGLVRGTAHL----------QSGTESEVSNASIINVPSFLYQQ 196 (414)
T ss_dssp CSCCHHHHHHHHHHHHHTTSSCCCTTCSEEEEEEEETTEEEEEEEEE----------CTTCSSCEEEEEEECSCBEEEEE
T ss_pred hhcCcCcHHHHHHHHHHcCCcccCCCCCCceEEEEcCCeEEEEEEEe----------CCCccceEEEEEEeeeecccccc
Confidence 58999999999999999887 65 3569999999999999853 12100011135554 443211 1
Q ss_pred CCCcccHHHHHHH-hCCCceeeeeecCCCceEEEEeCChhhhcccCC-ChhhHhc-------------------CCCCce
Q 027494 73 DFNFSEVSLILEA-LGVSSVVDMKITTTCEDIFVVLPSAKSVTDLQP-KFDEMKK-------------------CPGTRG 131 (222)
Q Consensus 73 ~~~~~~~~~l~~a-lgl~~~~~~~~~~G~~~lvv~v~~~~~l~~~~p-d~~~l~~-------------------~~~~~g 131 (222)
.++. .. .. +|-.+ .++ .++|++|++|++.+... .+.+ |...+.+ +++..+
T Consensus 197 ~i~v----~~-~~~lg~~~-~~i-~~gG~~~~iV~~~s~g~--~v~~~~~~~L~~~g~~i~~a~~~~~~~~Hp~fp~~~n 267 (414)
T 1w61_A 197 DVVV----VL-PKPYGEVR-VDI-AFGGNFFAIVPAEQLGI--DISVQNLSRLQEAGELLRTEINRSVKVQHPQLPHINT 267 (414)
T ss_dssp EEEE----EC-CTTTCEEE-EEE-EESSSEEEEEEGGGGTC--CSSSTTHHHHHHHHHHHHHHHHHHCCCCCSSCTTCCS
T ss_pred cCce----ec-cccCCcee-eEE-EECCeEEEEEEEEEccc--ccCcccHHHHHHHHHHHHHHHHhhccccCccCCCccc
Confidence 1111 00 01 22111 122 45788998899875433 2333 3333322 222123
Q ss_pred ---EEEEeeCCCCCcccEEEeec--CCCCCCCccCccccchhhhHHHHHhh--hCC-ceEEEe--eccCCCeEEEEEE--
Q 027494 132 ---IIVSGLAPPESGFDFYSRFF--CPKFGVNEDPVCGSAYCALATYWSQK--LGK-CDFVAY--AASPRSGILNIHL-- 199 (222)
Q Consensus 132 ---v~v~~~~~~~~~~~~~~R~f--~p~~Gv~EDpatGSa~~ala~yl~~~--~~~-~~~~~~--Qg~~r~g~l~v~~-- 199 (222)
+.++.... ...+++|+| .|..+++|+| ||||+||+++|+..+ +.. ..+..+ ||+.--|++..+.
T Consensus 268 v~~v~v~~~~~---~~~~~~R~~~v~erG~idesp-cGTGa~A~aa~l~~~G~l~~g~~~~~esiiGs~f~gri~~~~~~ 343 (414)
T 1w61_A 268 VDCVEIYGPPT---NPEANYKNVVIFGNRQADRSP-CGTGTSAKMATLYAKGQLRIGETFVYESILGSLFQGRVLGEERI 343 (414)
T ss_dssp EEEEEEEECCS---STTCSEEEEEEETTTEECSSC-CHHHHHHHHHHHHHTTCCCTTCCEEEEETTSCEEEEEEEEEEEE
T ss_pred EEEEEEEeCCC---CCceeEEEEEEeCCCccCCCC-ChhhHHHHHHHHHHcCCCCCCCeEEEEEccCcEEEEEEEEEeec
Confidence 33444321 123556665 2332347775 999999999999764 222 345444 3432223332221
Q ss_pred ccCC-------------CeEEEeeeEEEEEEEEEEC
Q 027494 200 DEQN-------------QRVQLRGKAITVMQGSLLV 222 (222)
Q Consensus 200 ~~~~-------------~~v~v~G~a~~v~~G~i~~ 222 (222)
.... ..++|+|+|+++.+|+|.|
T Consensus 344 ~~~~~~i~~~~~~~~~~v~~~I~G~A~i~g~~~l~l 379 (414)
T 1w61_A 344 PGVKVPVTKDAEEGMLVVTAEITGKAFIMGFNTMLF 379 (414)
T ss_dssp ETCCCTTCCTTSSEEEEEEEEEEECEEEEEEEEEEE
T ss_pred cCcccceeeccccCCceEEEEEEEEEEEEEEEEEEE
Confidence 1111 2489999999999999864
No 15
>2pw0_A PRPF methylaconitate isomerase; propionate catabolism, diaminopimelate epimerase like, aconi binding, unknown function; HET: TRC; 1.57A {Shewanella oneidensis} PDB: 2pvz_A 2h9f_A
Probab=97.29 E-value=0.024 Score=49.42 Aligned_cols=39 Identities=26% Similarity=0.391 Sum_probs=32.4
Q ss_pred CCCChHHHHHHHHHHhcCCCC----C----CcEEE-Eecee-eEEEEEe
Q 027494 2 ELCGHAALAAAHTLFSRGLVN----S----NTIEF-TTLSG-ILIAKKV 40 (222)
Q Consensus 2 ~~cGH~tlaaa~~l~~~~~~~----~----~~~~~-~t~~G-~v~v~~~ 40 (222)
+.|||.+.|.+-+..+.+++. . ..+++ +|+.| .+.+++.
T Consensus 105 ~nCGN~s~aVgpfAIe~GLV~~~~~~~~~~t~VrI~~tntGk~I~a~v~ 153 (397)
T 2pw0_A 105 GNCGNLTAAVGAFAISNGLIDAARIPRNGVCTVRIWQANIGKTIIAHVP 153 (397)
T ss_dssp SCCTTTHHHHHHHHHHTTCSCGGGCCSSEEEEEEEEETTTTEEEEEEEE
T ss_pred CCCcchHHHHHHHHHHCCCCCCcccCCCCcEEEEEEecCCCCEEEEEEE
Confidence 689999999999999999876 3 24777 89999 7777764
No 16
>3fve_A DAP epimerase, diaminopimelate epimerase; alpha/beta, amino-acid biosynthesis, isomerase, lysine biosy; 2.60A {Mycobacterium tuberculosis}
Probab=96.05 E-value=0.021 Score=47.86 Aligned_cols=95 Identities=16% Similarity=0.166 Sum_probs=58.6
Q ss_pred cCCCceEEEEeCChhhhcccCCChhhHhcCCC------CceEEEEeeCC-------------CCCcccEEEeecCCCCCC
Q 027494 97 TTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPG------TRGIIVSGLAP-------------PESGFDFYSRFFCPKFGV 157 (222)
Q Consensus 97 ~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~------~~gv~v~~~~~-------------~~~~~~~~~R~f~p~~Gv 157 (222)
.+||.++++.-.+. . +..+.+...++|+ +.|+.+..+.. ..++.++++|+|.|- -
T Consensus 9 G~GNDFvvid~~~~-~---~~~~~~~~~~lcdR~~GIGaDGli~v~~~~~~~~~~~~~~~~~~~~~ad~~mr~fN~D--G 82 (290)
T 3fve_A 9 GTQNDFVLLPDVDA-E---LVLTAARVAALCDRRKGLGADGVLRVTTAGAAQAVGVLDSLPEGVRVTDWYMDYRNAD--G 82 (290)
T ss_dssp SSSCEEEEEECTTC-C---SCCCHHHHHHHHCTTTSCCCSEEEEEEEHHHHHHTTSCSSCCTTCCTTSEEEEEEETT--S
T ss_pred eCCCcEEEEECCCC-c---CCCCHHHHHHhcccCCCCCCCEEEEEeccccccccccccccccCCCCCCEEEEEECCC--C
Confidence 46898888864432 1 2234455555654 34677654321 012478999999982 2
Q ss_pred CccCccccchhhhHHHHHhh-h-CCceEEEeeccCCCeEEEEEEc
Q 027494 158 NEDPVCGSAYCALATYWSQK-L-GKCDFVAYAASPRSGILNIHLD 200 (222)
Q Consensus 158 ~EDpatGSa~~ala~yl~~~-~-~~~~~~~~Qg~~r~g~l~v~~~ 200 (222)
.|-+-||.|.-++|.|+.++ + .+..+.+.. +.|.+.+++.
T Consensus 83 SEaemCGNg~Rc~a~~l~~~g~~~~~~~~ieT---~aG~~~v~~~ 124 (290)
T 3fve_A 83 SAAQMCGNGVRVFAHYLRASGLEVRDEFVVGS---LAGPRPVTCH 124 (290)
T ss_dssp CBCCTTCTTHHHHHHHHHHTTSCCCSEEEEEC---TTCCEEEEEE
T ss_pred CccccccchHHHHHHHHHHhCCCCCceEEEEe---CCeEEEEEEE
Confidence 48889999999999998764 2 233444444 5666666654
No 17
>1s7j_A Phenazine biosynthesis protein PHZF family; bacteria, structural PSI, protein structure initiative; 2.30A {Enterococcus faecalis} SCOP: d.21.1.2
Probab=95.87 E-value=0.041 Score=45.14 Aligned_cols=94 Identities=18% Similarity=0.119 Sum_probs=57.0
Q ss_pred cCCCceEEEEeCChhhhcccCCChhhHhcCCC---CceEEEEeeCCCCCcccEEEeecCCCCCCCccCccccchhhhHHH
Q 027494 97 TTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPG---TRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATY 173 (222)
Q Consensus 97 ~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~---~~gv~v~~~~~~~~~~~~~~R~f~p~~Gv~EDpatGSa~~ala~y 173 (222)
..|||..|+...+ . ++.+.+.++++ ..++.+..+. +.++++|+|.|. .|=|-||-+.-+.|.|
T Consensus 16 ~~GNp~~Vv~~~~--~-----l~~~~~q~ia~~~~~set~fv~~~----~~d~~~R~Ftp~---~E~~~CGh~t~~~a~~ 81 (262)
T 1s7j_A 16 FKGNPAAVYVLEK--W-----LPEAVMQNIAIENNLSETAFTVKE----GQSYALRWFTPE---REIDLCGHATLATAFV 81 (262)
T ss_dssp TSSEEEEEEECSS--C-----CCHHHHHHHHHHHCCSCEEEEEEE----TTEEEEEEECSS---SEESCCHHHHHHHHHH
T ss_pred CCCCCeEEEECCC--C-----CCHHHHHHHHHHhCCCEEEEEEcC----CCCEEEEEECCC---CccCcCchHHHHHHHH
Confidence 3588887775443 1 23333433322 1233332222 357999999994 5989999999999888
Q ss_pred HHhhh--CCceEEEeeccCCCeEEEEEEccCCCeEEEe
Q 027494 174 WSQKL--GKCDFVAYAASPRSGILNIHLDEQNQRVQLR 209 (222)
Q Consensus 174 l~~~~--~~~~~~~~Qg~~r~g~l~v~~~~~~~~v~v~ 209 (222)
|.++. ....+..+. +.|.+.++++ ++.++++
T Consensus 82 l~~~g~~~~~~~~~et---~~G~l~v~~~--~~~v~m~ 114 (262)
T 1s7j_A 82 LFNYYSVAEETLHFTS---QSGPLAVTKK--EEYYYLD 114 (262)
T ss_dssp HHHHSCCCSSEEEEEE---TTEEEEEEEE--TTEEEEE
T ss_pred HHHhcCCCCCeEEEEe---CceEEEEEEE--CCEEEEe
Confidence 87542 223444444 5788888875 3445543
No 18
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic; PLP-independenet amino acid racemase, aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A {Arabidopsis thaliana} PDB: 3ekm_A*
Probab=95.83 E-value=0.04 Score=46.73 Aligned_cols=94 Identities=21% Similarity=0.342 Sum_probs=58.2
Q ss_pred cCCCceEEEEeCChhhhcccCCChhhHhcCCC------CceEEEEeeCCCCCcccEEEeecCCCCCCCccCccccchhhh
Q 027494 97 TTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPG------TRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCAL 170 (222)
Q Consensus 97 ~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~------~~gv~v~~~~~~~~~~~~~~R~f~p~~Gv~EDpatGSa~~al 170 (222)
.+||.+++|.-.+. ... ..+.+...++|+ +.|+.+..+.. .+.++++|+|.|- | .|-.-||.|.-++
T Consensus 34 G~GNDFvviD~~~~-~~~--~~~~~~~~~lcdR~~GIGaDGll~v~~~~--~~aD~~mr~FN~D-G-SEaemCGNGtRc~ 106 (317)
T 3ejx_A 34 GLGNDFILVDNRDS-SEP--KITQEQAAKLCDRNFGVGADGVIFAMPGV--NGTDYAMRIFNSD-G-SEPEMCGNGVRCF 106 (317)
T ss_dssp ETTEEEEEEECTTC-SSC--SSCHHHHHHHTCTTTSSCCSEEEEEEECS--TTCSEEEEEEETT-S-CCCSCCHHHHHHH
T ss_pred CCCCcEEEEeCCCc-ccc--CCCHHHHHHhhccCCCCCCCeEEEEcCCC--CCCCEEEEEEcCC-C-CeeccCccHHHHH
Confidence 46998888854331 111 223445556664 34666655432 2568999999983 2 4778899999999
Q ss_pred HHHHHh-h-h-CCceEEEeeccCCCeEEEEEEc
Q 027494 171 ATYWSQ-K-L-GKCDFVAYAASPRSGILNIHLD 200 (222)
Q Consensus 171 a~yl~~-~-~-~~~~~~~~Qg~~r~g~l~v~~~ 200 (222)
+.|+.+ . + ++..+.+.. +.|.+.+++.
T Consensus 107 A~~l~~~~g~~~~~~~~ieT---~aG~l~v~~~ 136 (317)
T 3ejx_A 107 ARFIAELENLQGKHSFTIHT---GAGLIVPEIQ 136 (317)
T ss_dssp HHHHHHHTTCCSCCBCCEEE---TTEEEEEEEC
T ss_pred HHHHHHhcCCCCCceEEEEe---CCeEEEEEEc
Confidence 999876 2 2 222333333 5666666664
No 19
>1ym5_A YHI9, hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic region; PHZF enzyme superfamily, double hot-DOG, structural genomics; 2.05A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.14 Score=42.80 Aligned_cols=98 Identities=12% Similarity=0.190 Sum_probs=58.2
Q ss_pred CCCceEEEEe--CChhhhcccCCChhhHhcCCC---CceEEEEeeCCCCCcccEEEeecCCCCCCCccCccccchhhhHH
Q 027494 98 TTCEDIFVVL--PSAKSVTDLQPKFDEMKKCPG---TRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALAT 172 (222)
Q Consensus 98 ~G~~~lvv~v--~~~~~l~~~~pd~~~l~~~~~---~~gv~v~~~~~~~~~~~~~~R~f~p~~Gv~EDpatGSa~~ala~ 172 (222)
.|||..||.+ .+...| +-+.+.++++ ..++.+..+. .+++.+|++|+|.| . .|=|-||-++-+.|.
T Consensus 19 ~GNp~~Vv~~~~~d~~~l-----~~~~mq~iA~~~~~set~fv~~~-~~~~~d~~lR~Ftp--~-~E~~~CGh~t~~~a~ 89 (300)
T 1ym5_A 19 MGNPVAVINFLEIDENEV-----SQEELQAIANWTNLSETTFLFKP-SDKKYDYKLRIFTP--R-SELPFAGHPTIGSCK 89 (300)
T ss_dssp SSEEEEEEECTTSCGGGS-----CHHHHHHHHHHHTSSCEEEEECC-SSTTCSEEEEEECS--S-CEESCCHHHHHHHHH
T ss_pred CCCCeEEEEeccCCCCCC-----CHHHHHHHHHHhCCCceEEEecC-CCCCCcEEEEEEcC--C-CCcCcCCCcHHHHHH
Confidence 4999888853 233332 3344444322 2344333321 12246799999999 4 599999999999888
Q ss_pred HHHhhh--C-CceEEEeeccCCCeEEEEEEccCCCeEEEe
Q 027494 173 YWSQKL--G-KCDFVAYAASPRSGILNIHLDEQNQRVQLR 209 (222)
Q Consensus 173 yl~~~~--~-~~~~~~~Qg~~r~g~l~v~~~~~~~~v~v~ 209 (222)
||.+.. . ...+..+. +.|.+.++++ ++.++++
T Consensus 90 ~l~~~g~~~~~~~~~~et---~aG~l~v~~~--~~~v~m~ 124 (300)
T 1ym5_A 90 AFLEFTKNTTATSLVQEC---KIGAVPITIN--EGLISFK 124 (300)
T ss_dssp HHHHHTTCSCCSEEEEEE---TTEEEEEEEE--TTEEEEE
T ss_pred HHHHhCCCCCCceEEEEe---CCeEEEEEEc--CCEEEEe
Confidence 887542 1 23343333 5788888875 3445543
No 20
>1xub_A Phenazine biosynthesis protein PHZF; biosynthetic protein; 1.30A {Pseudomonas fluorescens} SCOP: d.21.1.2 d.21.1.2 PDB: 1u1w_A* 1u1v_A* 1u1x_A* 1xua_A* 1t6k_A
Probab=94.99 E-value=0.055 Score=45.24 Aligned_cols=52 Identities=23% Similarity=0.318 Sum_probs=38.4
Q ss_pred cccEEEeecCCCCCCCccCccccchhhhHHHHHhhhCCceEEEeeccCCCeEEEEEEc
Q 027494 143 GFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLGKCDFVAYAASPRSGILNIHLD 200 (222)
Q Consensus 143 ~~~~~~R~f~p~~Gv~EDpatGSa~~ala~yl~~~~~~~~~~~~Qg~~r~g~l~v~~~ 200 (222)
+.++++|+|.|. .|=|-||-++-++|.||.++++...+..+. +.|.+.++++
T Consensus 75 ~~d~~lR~Ftp~---~E~~~CGhat~~~a~~l~~~~~~~~~~~eT---~aG~l~v~~~ 126 (298)
T 1xub_A 75 GGDALIRIFTPV---NELPFAGAPLLGTAIALGAHTDNHRLYLET---QMGTIAFELE 126 (298)
T ss_dssp SSSEEEEEECSS---CEESCCHHHHHHHHHHHHTTCCCSEEEEEE---TTEEEEEEEE
T ss_pred CCcEEEEEEcCC---CCcCcCchHHHHHHHHHHHhCCCCeEEEEe---CCEEEEEEEE
Confidence 467999999994 599999999999998887543333343333 5788888875
No 21
>3edn_A Phenazine biosynthesis protein, PHZF family; diaminopimelate epimerase-like fold, alpha and beta protein class, structural genomics; HET: MSE; 1.50A {Bacillus anthracis}
Probab=94.97 E-value=0.1 Score=43.59 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=54.5
Q ss_pred cCCCceEEEEeCChhhhcccCCChhhHhcCCC---CceEEEEeeCCCCCcccEEEeecCCCCCCCccCccccchhhhHHH
Q 027494 97 TTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPG---TRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATY 173 (222)
Q Consensus 97 ~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~---~~gv~v~~~~~~~~~~~~~~R~f~p~~Gv~EDpatGSa~~ala~y 173 (222)
..|||..|+. +. +. ++.+.+.++++ ..++.+..+. ++.+|++|+|.| | .|=|-||-+.-+.|.|
T Consensus 17 ~~GNp~aVv~-d~-~~-----l~~~~mq~iA~~~~~~et~fv~~~---~~ad~~~R~Fnp--g-sE~~~CGh~t~~~a~~ 83 (299)
T 3edn_A 17 NMGNPAGIVL-DA-DG-----LTEEEMQRIAEKVGFNETSFVLSS---EVADIRMRYFTP--G-YEMDLCGHGTVGTIYA 83 (299)
T ss_dssp TSSEEEEEES-CC-TT-----CCHHHHHHHHHHHCSSCEEEEECC---SSSSEEEEEECS--S-CEESCCHHHHHHHHHH
T ss_pred CCCCCEEEEE-CC-CC-----CCHHHHHHHHHHhCCCeEEEEecC---CCCCEEEEEECC--C-CccccCccHHHHHHHH
Confidence 3588876663 22 22 23344444332 2455444332 235799999998 4 4999999999998888
Q ss_pred HHhhh---CCceEEEeeccCCCeEEEEEEc
Q 027494 174 WSQKL---GKCDFVAYAASPRSGILNIHLD 200 (222)
Q Consensus 174 l~~~~---~~~~~~~~Qg~~r~g~l~v~~~ 200 (222)
|.++. ....+..+. +.|.+.+++.
T Consensus 84 l~~~g~~~~~~~~~~eT---~aG~l~v~~~ 110 (299)
T 3edn_A 84 LRERGLLEEKASLTIET---KAGILPIQIG 110 (299)
T ss_dssp HHHTTCSCSCSEEEEEE---TTEEEEEEEE
T ss_pred HHHcCCCCCCCEEEEEc---CceEEEEEEE
Confidence 87642 123444444 6788888875
No 22
>2gke_A DAP epimerase, diaminopimelate epimerase; enzyme-inhibitor complex, covalently bound inhibitor, isomer; HET: ZDP; 1.35A {Haemophilus influenzae} SCOP: d.21.1.1 d.21.1.1 PDB: 1gqz_A* 2gkj_A* 2q9h_A* 2q9j_A 1bwz_A
Probab=94.86 E-value=0.1 Score=42.96 Aligned_cols=94 Identities=15% Similarity=0.241 Sum_probs=53.7
Q ss_pred cCCCceEEEEeCChhhhcccCCChhhHhcCCCC------ceEEEEeeCCCCCcccEEEeecCCCCCCCccCccccchhhh
Q 027494 97 TTTCEDIFVVLPSAKSVTDLQPKFDEMKKCPGT------RGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCAL 170 (222)
Q Consensus 97 ~~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~~------~gv~v~~~~~~~~~~~~~~R~f~p~~Gv~EDpatGSa~~al 170 (222)
..||+. |+ ++.... ....+.+.++++++. .++.+..+ +..++.++++|+|.|. -.|=+-||-+.-++
T Consensus 8 ~~GNp~-Vv-~d~~~~--~~~l~~~~~q~ia~e~~G~g~~et~fv~~-~~~~~~d~~~r~F~pd--G~E~~~CGh~t~~~ 80 (274)
T 2gke_A 8 GLGNDF-VV-VDGVTQ--NVFFTPETIRRLANRHCGIGFDQLLIVEA-PYDPELDFHYRIFNAD--GSEVSQCGNGARCF 80 (274)
T ss_dssp ETTEEE-EE-EECSSS--CCCCCHHHHHHHHCTTTSCCCSEEEEEEC-CSSTTSSEEEEEEETT--SCEESCCHHHHHHH
T ss_pred cCCCCE-EE-ECCCcc--cCCCCHHHHHHhhCcCCCcccceEEEECC-CCCCCCCEEEEEECCC--CChHHhCcChHHHH
Confidence 358988 44 443221 112344445554431 34433322 1123567999999984 24889999999999
Q ss_pred HHHHHhhh--CCceEEEeeccCCCeEEEEEEc
Q 027494 171 ATYWSQKL--GKCDFVAYAASPRSGILNIHLD 200 (222)
Q Consensus 171 a~yl~~~~--~~~~~~~~Qg~~r~g~l~v~~~ 200 (222)
|.||.++. ....+.++. +.|.+.++++
T Consensus 81 a~~l~~~g~~~~~~~~~et---~aG~~~v~~~ 109 (274)
T 2gke_A 81 ARFVTLKGLTNKKDISVST---QKGNMVLTVK 109 (274)
T ss_dssp HHHHHHTTSCCCSEEEEEC---SSCEEEEEEC
T ss_pred HHHHHHhCCCCCceEEEEe---CCceEEEEEe
Confidence 98887642 223343333 5677777764
No 23
>1u0k_A Gene product PA4716; sctructural genomics, MCSG, protein initiative, structural genomics, PSI, midwest center for ST genomics; 1.50A {Pseudomonas aeruginosa} SCOP: d.21.1.2 d.21.1.2
Probab=94.70 E-value=0.12 Score=42.78 Aligned_cols=88 Identities=14% Similarity=0.007 Sum_probs=53.9
Q ss_pred CCCceEEEEeCChhhhcccCCChhhHhcCCC---CceEEEEeeCCCCCcccEEEeecCCCCCCCccCccccchhhhHHHH
Q 027494 98 TTCEDIFVVLPSAKSVTDLQPKFDEMKKCPG---TRGIIVSGLAPPESGFDFYSRFFCPKFGVNEDPVCGSAYCALATYW 174 (222)
Q Consensus 98 ~G~~~lvv~v~~~~~l~~~~pd~~~l~~~~~---~~gv~v~~~~~~~~~~~~~~R~f~p~~Gv~EDpatGSa~~ala~yl 174 (222)
.|||..|+...+ . ++.+.+.++++ ..++.+..+.. + +.++++|+|.|. .|=|-||-+.-+.+.||
T Consensus 19 ~GNp~~Vv~~~~--~-----l~~~~mq~ia~~~~~set~fv~~~~-~-~~d~~~R~Ftp~---~E~~~CGh~t~~~a~~l 86 (288)
T 1u0k_A 19 TGNGLAVFDDAS--A-----LDDAAMQAWTRELRQFESIFLLPGD-D-PRAFRARIFTLE---EELPFAGHPLLGAAALL 86 (288)
T ss_dssp CSEEEEEESCCT--T-----CCHHHHHHHHHHHCCSEEEEEEECS-C-TTEEEEEEEESS---CBCCSCCTHHHHHHHHH
T ss_pred CCCceEEEeCCC--C-----CCHHHHHHHHHHhCCCeEEEEecCC-C-CCcEEEEEECCC---CeeCcCchHHHHHHHHH
Confidence 588887774322 2 23344444332 23443333321 1 467999999994 59999999999999888
Q ss_pred H-hhh--CCceEEEeeccCCCeEEEEEEc
Q 027494 175 S-QKL--GKCDFVAYAASPRSGILNIHLD 200 (222)
Q Consensus 175 ~-~~~--~~~~~~~~Qg~~r~g~l~v~~~ 200 (222)
. ++. ....+..+. +.|.+.++++
T Consensus 87 ~~~~g~~~~~~~~~et---~aG~~~v~~~ 112 (288)
T 1u0k_A 87 HHLRGGDNEQHWTLHL---ASKSVALRSV 112 (288)
T ss_dssp HHHHCCSSCEEEEEEC---SSCEEEEEEE
T ss_pred HHhcCCCCCceEEEEe---CCeEEEEEEE
Confidence 7 542 122333333 6788888875
No 24
>2otn_A Diaminopimelate epimerase; DAP, lysine ME lanthionine, isomerase; 2.40A {Bacillus anthracis str}
Probab=94.51 E-value=0.18 Score=42.22 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=37.5
Q ss_pred cccEEEeecCCCCCCCccCccccchhhhHHHHHhhh--CCceEEEeeccCCCeEEEEEE
Q 027494 143 GFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKL--GKCDFVAYAASPRSGILNIHL 199 (222)
Q Consensus 143 ~~~~~~R~f~p~~Gv~EDpatGSa~~ala~yl~~~~--~~~~~~~~Qg~~r~g~l~v~~ 199 (222)
+.+|++|+|.|. .-|=|-||-+.-++|.||.++. ....+.++. +.|.+.+++
T Consensus 78 ~ad~~~R~Ftpd--gsE~~~CGh~t~~~a~~l~~~g~~~~~~~~~eT---~aG~l~v~~ 131 (308)
T 2otn_A 78 VAPVKMRMFNND--GSEGKSCGNGLRCVAKYAYEHKLVEDTVFTIET---LAGIVTAEV 131 (308)
T ss_dssp SSSEEEEEEETT--SCEECCTTTTHHHHHHHHHHTTSCSSSEEEEEE---TTEEEEEEE
T ss_pred CCcEEEEEEcCC--CChHHhCcChHHHHHHHHHHcCCCCCCeEEEEe---CCeEEEEEE
Confidence 567999999983 2388999999999998887642 233444444 567777776
No 25
>4dun_A Putative phenazine biosynthesis PHZC/PHZF protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: BTB; 1.76A {Clostridium difficile}
Probab=94.50 E-value=0.2 Score=41.28 Aligned_cols=58 Identities=24% Similarity=0.325 Sum_probs=40.7
Q ss_pred cccEEEeecCCCCCCCccCccccchhhhHHHHHhhhC--CceEEEeeccCCCeEEEEEEccCCCeEEE
Q 027494 143 GFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKLG--KCDFVAYAASPRSGILNIHLDEQNQRVQL 208 (222)
Q Consensus 143 ~~~~~~R~f~p~~Gv~EDpatGSa~~ala~yl~~~~~--~~~~~~~Qg~~r~g~l~v~~~~~~~~v~v 208 (222)
+.++++|+|.|. .|=|-||-++-+.+.+|.++.. ...+..+. +.|.|.++++ ++.+++
T Consensus 55 ~~d~~lR~Ftp~---~Ev~~CGHatl~~a~~l~~~~~~~~~~~~~et---~aG~l~v~~~--~~~i~m 114 (263)
T 4dun_A 55 KGNYELRWFTPK---AEIDLCGHATLAAAYVISNFIDVNVKKIDFFT---QSGKLEVTRN--GNLYEM 114 (263)
T ss_dssp TTEEEEEEECSS---CEESCCHHHHHHHHHHHHHHTSTTCSEEEEEE---TTEEEEEEEE--TTEEEE
T ss_pred CCcEEEEEEeCC---cEeccCCcHHHHHHHHHHHhcCCCCCeEEEEe---CCeEEEEEEe--CCEEEE
Confidence 457999999994 5999999998888888876432 23444444 5788888875 334444
No 26
>3g7k_A 3-methylitaconate isomerase; DAPF family fold, closed conformation, open conformation; 2.70A {Eubacterium barkeri}
Probab=94.47 E-value=0.25 Score=42.84 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=29.6
Q ss_pred CCCChHHHHHHHHHHhcCCCCC----CcEEEE-ecee-eEEEEEe
Q 027494 2 ELCGHAALAAAHTLFSRGLVNS----NTIEFT-TLSG-ILIAKKV 40 (222)
Q Consensus 2 ~~cGH~tlaaa~~l~~~~~~~~----~~~~~~-t~~G-~v~v~~~ 40 (222)
+.|||-+.|..-+..+.+++.. ..+++. |+.| .+.+++.
T Consensus 94 ~nCGN~~aaVgpfAie~GLV~~~~~~t~VRI~n~Ntgk~i~a~v~ 138 (391)
T 3g7k_A 94 GNCGNISAGVGPFAIDESFVKAVEPMTRVCIHNTNTGKLLYAEVE 138 (391)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCCCSSEEEEEEEETTTCCEEEEEEE
T ss_pred CCccchHHHHHHHHHHCCCccCCCCcEEEEEEecCCCCEEEEEEE
Confidence 5899999999999999988753 246666 6887 6666664
No 27
>1qya_A ORFB, hypothetical protein YDDE; putative phenazine biosynthesis protein, epimerase, antibiot biosynthesis protein, structural genomics; 2.00A {Escherichia coli} SCOP: d.21.1.2 d.21.1.2 PDB: 1sdj_A 1qy9_A
Probab=92.27 E-value=0.43 Score=39.84 Aligned_cols=51 Identities=25% Similarity=0.340 Sum_probs=32.5
Q ss_pred cccEEEeecCCCCCCCccCccccchhhhHHHHHhh-h-CCc-eEEEeeccCCCeEEEEEEc
Q 027494 143 GFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQK-L-GKC-DFVAYAASPRSGILNIHLD 200 (222)
Q Consensus 143 ~~~~~~R~f~p~~Gv~EDpatGSa~~ala~yl~~~-~-~~~-~~~~~Qg~~r~g~l~v~~~ 200 (222)
+.++++|+|.| . .|=|-||-++-+.|. |.++ + ... .+..+. +.|.+.++++
T Consensus 65 ~~d~~~R~Ftp--~-~E~~~CGh~t~~~a~-l~~~g~~~~~~~~~~et---~aG~l~v~~~ 118 (307)
T 1qya_A 65 DSDVRIRYFTP--T-VEVPICGHATVAAHY-VRAKVLGLGNCTIWQTS---LAGKHRVTIE 118 (307)
T ss_dssp SSSEEEEEECS--S-SEECC--CHHHHHHH-HHHHHHTCCSEEEEEEC---C--CEEEEEE
T ss_pred CCceEEEEECC--C-CEeCCCchHHHHHHH-HHHhCCCCCCceEEEEc---CCeEEEEEEE
Confidence 46799999999 4 598999999888887 7653 2 222 343333 5677777774
No 28
>2azp_A Hypothetical protein PA1268; PA1268,APC5861,sulfur SAD, structural genomics, PSI, protein structure initiative; 2.13A {Pseudomonas aeruginosa}
Probab=91.71 E-value=0.77 Score=38.45 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=41.2
Q ss_pred cccEEEeecCCCCCCCccCccccchhhhHHHHHhhh--CCceEEEeeccCCCeEEEEEEccCCCeEEEe
Q 027494 143 GFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQKL--GKCDFVAYAASPRSGILNIHLDEQNQRVQLR 209 (222)
Q Consensus 143 ~~~~~~R~f~p~~Gv~EDpatGSa~~ala~yl~~~~--~~~~~~~~Qg~~r~g~l~v~~~~~~~~v~v~ 209 (222)
+.++++|+|.|. | |=|-||-++-++|.||.+.. ....+..+. +.|.+.+++. +++.+.+.
T Consensus 73 ~ad~~~r~Ftp~-g--E~~~CGh~t~~~a~~l~~~g~~~~~~~~~eT---~aG~v~v~~~-~~~~v~m~ 134 (318)
T 2azp_A 73 EACAGVIFFNNS-G--YLGMCGHGTIGLVASLAHLGRIGPGVHRIET---PVGEVEATLH-EDGSVSVR 134 (318)
T ss_dssp TSSEEEEEECSS-S--BCSCCHHHHHHHHHHHHHTTSCCSEEEEEEC---TTCCEEEEEC-TTSCEEEE
T ss_pred CCcEEEEEEcCC-C--ccCcCccHHHHHHHHHHHcCCCCCCEEEEEe---CcEEEEEEEe-cCCeEEEE
Confidence 568999999983 2 99999999999998887632 222333333 5788888875 23445553
No 29
>1tm0_A Proline racemase; structural genomics, alpha-beta protein THAT resembles doubl barrel, in EACH of which AN alpha helix is sandwiched, PSI; 2.80A {Brucella melitensis} SCOP: d.21.1.3
Probab=87.88 E-value=2.2 Score=36.29 Aligned_cols=53 Identities=17% Similarity=0.241 Sum_probs=38.0
Q ss_pred CcccEEEeecCCCCCCCccCccccchhhhHHHHHhh-h-C----CceEEEeeccCCCeEEEEEEc
Q 027494 142 SGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQK-L-G----KCDFVAYAASPRSGILNIHLD 200 (222)
Q Consensus 142 ~~~~~~~R~f~p~~Gv~EDpatGSa~~ala~yl~~~-~-~----~~~~~~~Qg~~r~g~l~v~~~ 200 (222)
++.++.+|+|.|. | |-|-||.+.-+++.||.+. + . ...++++. ..|.+.+++.
T Consensus 72 ~~aD~~~rifn~d-g--e~~mCGhgt~~~a~~l~e~Glv~~~~~~~~~~ieT---~aG~v~v~v~ 130 (350)
T 1tm0_A 72 PRAQMGFIIMEPA-D--TPPMSGSNSICVSTVLLDSGIIAMQEPVTHMVLEA---PGGIIEVEAE 130 (350)
T ss_dssp SSCSEEEECCCSS-C--CCSCCHHHHHHHHHHHHHHTSSCCCSSEEEEEEEC---SSCEEEEEEE
T ss_pred CCCCEEEEEEECC-C--ccccccchHHHHHHHHHHcCCCCCCCCCcEEEEEC---CCeEEEEEEE
Confidence 3578999999983 3 7799999999999998763 1 1 12343333 5688888774
No 30
>1w61_A B-cell mitogen; racemase, racemase pyridoxal phosphate-independent, stereo inversion, acid/base catalysis, homodimer, alpha/beta domains; 2.1A {Trypanosoma cruzi} PDB: 1w62_A
Probab=87.23 E-value=2.4 Score=37.05 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=38.0
Q ss_pred CcccEEEeecCCCCCCCccCccccchhhhHHHHHhh-h---C----CceEEEeeccCCCeEEEEEEc
Q 027494 142 SGFDFYSRFFCPKFGVNEDPVCGSAYCALATYWSQK-L---G----KCDFVAYAASPRSGILNIHLD 200 (222)
Q Consensus 142 ~~~~~~~R~f~p~~Gv~EDpatGSa~~ala~yl~~~-~---~----~~~~~~~Qg~~r~g~l~v~~~ 200 (222)
++.++.+|+|.|. | |=|-||.++-+++.||.+. + . ...++++. ..|.+.+++.
T Consensus 112 ~~AD~~vRiFnpd-G--e~~mCGHgTi~~a~~L~e~Gl~~v~~~~~~~~i~lET---~aGlV~v~v~ 172 (414)
T 1w61_A 112 EGADLGIVFMDTG-G--YLNMCGHNSIAAVTAAVETGIVSVPAKATNVPVVLDT---PAGLVRGTAH 172 (414)
T ss_dssp TTCSEEEEEEESS-C--CCSCCHHHHHHHHHHHHHTTSSCCCTTCSEEEEEEEE---TTEEEEEEEE
T ss_pred CCCCEEEEEECCC-C--chhcCcCcHHHHHHHHHHcCCcccCCCCCCceEEEEc---CCeEEEEEEE
Confidence 4578999999984 3 7799999999999998753 2 1 12344443 6777777774
Done!