Query 027496
Match_columns 222
No_of_seqs 199 out of 1947
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 10:47:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.8 4E-20 8.7E-25 139.0 14.2 145 36-194 13-159 (160)
2 KOG0034 Ca2+/calmodulin-depend 99.8 1.4E-19 2.9E-24 140.4 15.7 139 63-203 12-187 (187)
3 KOG0044 Ca2+ sensor (EF-Hand s 99.8 1.7E-19 3.7E-24 140.0 14.0 142 57-201 41-185 (193)
4 KOG0038 Ca2+-binding kinase in 99.8 8.5E-19 1.8E-23 127.4 12.3 145 54-201 2-187 (189)
5 KOG0027 Calmodulin and related 99.8 2.9E-18 6.2E-23 130.1 14.5 136 43-191 8-149 (151)
6 PTZ00183 centrin; Provisional 99.7 1.2E-15 2.5E-20 115.9 14.6 143 39-194 13-157 (158)
7 KOG0028 Ca2+-binding protein ( 99.7 2.2E-15 4.8E-20 111.4 13.6 135 44-192 34-171 (172)
8 PTZ00184 calmodulin; Provision 99.6 2.4E-14 5.1E-19 107.4 14.4 137 41-190 9-147 (149)
9 KOG0037 Ca2+-binding protein, 99.5 3.9E-12 8.4E-17 99.0 16.3 158 5-189 58-218 (221)
10 PF13499 EF-hand_7: EF-hand do 99.4 5.8E-13 1.3E-17 86.5 6.7 64 122-189 3-66 (66)
11 COG5126 FRQ1 Ca2+-binding prot 99.4 3.1E-12 6.6E-17 96.4 10.7 112 68-190 8-119 (160)
12 KOG0037 Ca2+-binding protein, 99.4 8.1E-12 1.7E-16 97.3 12.9 137 43-199 57-196 (221)
13 KOG0030 Myosin essential light 99.4 4.7E-12 1E-16 91.7 9.8 134 45-190 13-150 (152)
14 KOG0027 Calmodulin and related 99.4 9.7E-12 2.1E-16 94.2 11.9 111 74-191 2-113 (151)
15 KOG0031 Myosin regulatory ligh 99.4 5.3E-11 1.1E-15 87.7 14.6 135 40-191 29-165 (171)
16 PTZ00184 calmodulin; Provision 99.2 1E-10 2.2E-15 87.6 11.1 109 73-191 4-112 (149)
17 PTZ00183 centrin; Provisional 99.2 2.6E-10 5.6E-15 86.4 13.1 109 73-191 10-118 (158)
18 cd05022 S-100A13 S-100A13: S-1 99.2 2.5E-11 5.5E-16 83.3 6.4 65 121-192 10-76 (89)
19 PLN02964 phosphatidylserine de 99.2 5.2E-10 1.1E-14 101.4 13.0 124 57-192 118-244 (644)
20 KOG0036 Predicted mitochondria 99.1 8.9E-10 1.9E-14 93.1 10.9 149 44-215 15-163 (463)
21 cd05027 S-100B S-100B: S-100B 99.1 5.5E-10 1.2E-14 76.7 7.1 68 120-191 9-79 (88)
22 cd05026 S-100Z S-100Z: S-100Z 99.0 1E-09 2.2E-14 76.3 7.6 68 121-192 12-82 (93)
23 KOG0028 Ca2+-binding protein ( 99.0 5E-09 1.1E-13 77.9 11.6 109 73-191 26-134 (172)
24 KOG4223 Reticulocalbin, calume 99.0 4.6E-09 1E-13 86.4 12.0 168 10-187 119-301 (325)
25 cd05029 S-100A6 S-100A6: S-100 99.0 1.8E-09 3.9E-14 74.1 7.4 66 121-191 12-79 (88)
26 cd05031 S-100A10_like S-100A10 99.0 2E-09 4.2E-14 75.0 7.5 73 120-196 9-84 (94)
27 cd05025 S-100A1 S-100A1: S-100 98.9 7.2E-09 1.6E-13 71.8 8.4 73 121-197 11-86 (92)
28 KOG4223 Reticulocalbin, calume 98.9 1.7E-08 3.7E-13 83.1 11.6 141 42-193 76-230 (325)
29 KOG0044 Ca2+ sensor (EF-Hand s 98.9 5.4E-09 1.2E-13 81.5 7.6 122 57-191 6-128 (193)
30 KOG0034 Ca2+/calmodulin-depend 98.9 3.4E-08 7.4E-13 76.9 11.8 133 5-146 34-174 (187)
31 smart00027 EH Eps15 homology d 98.9 1E-08 2.2E-13 71.6 7.2 82 121-218 12-93 (96)
32 cd00052 EH Eps15 homology doma 98.9 1.1E-08 2.4E-13 66.1 6.9 59 124-192 4-62 (67)
33 PF13833 EF-hand_8: EF-hand do 98.8 1E-08 2.3E-13 63.6 6.2 52 132-191 1-53 (54)
34 cd05023 S-100A11 S-100A11: S-1 98.8 1.6E-08 3.6E-13 69.5 7.5 67 121-191 11-80 (89)
35 PF13499 EF-hand_7: EF-hand do 98.8 1.5E-08 3.3E-13 65.5 5.9 63 81-145 1-66 (66)
36 cd00213 S-100 S-100: S-100 dom 98.8 3.1E-08 6.7E-13 67.9 7.4 68 121-192 10-80 (88)
37 cd00252 SPARC_EC SPARC_EC; ext 98.8 2.3E-08 4.9E-13 72.0 6.9 61 120-192 49-109 (116)
38 KOG2643 Ca2+ binding protein, 98.8 1.3E-07 2.7E-12 80.8 12.3 176 2-191 231-453 (489)
39 KOG0377 Protein serine/threoni 98.8 6.8E-08 1.5E-12 82.5 10.6 104 82-191 466-615 (631)
40 PLN02964 phosphatidylserine de 98.8 1.6E-07 3.4E-12 85.5 13.3 105 36-147 136-243 (644)
41 cd00051 EFh EF-hand, calcium b 98.7 9.1E-08 2E-12 60.0 6.8 59 123-189 4-62 (63)
42 smart00027 EH Eps15 homology d 98.6 3E-07 6.4E-12 64.2 9.1 81 73-158 3-84 (96)
43 cd05030 calgranulins Calgranul 98.6 2.3E-07 5E-12 63.7 7.2 65 120-191 9-79 (88)
44 KOG0031 Myosin regulatory ligh 98.6 7.2E-07 1.6E-11 66.1 9.4 104 73-191 25-129 (171)
45 PF14658 EF-hand_9: EF-hand do 98.5 4.8E-07 1E-11 57.9 6.5 60 124-191 3-64 (66)
46 cd05022 S-100A13 S-100A13: S-1 98.5 8.4E-07 1.8E-11 60.9 7.9 70 78-148 6-76 (89)
47 KOG0033 Ca2+/calmodulin-depend 98.3 4.8E-07 1E-11 72.7 4.3 35 1-35 239-273 (355)
48 KOG0036 Predicted mitochondria 98.3 8.5E-06 1.8E-10 69.5 11.6 102 74-190 8-109 (463)
49 PF00036 EF-hand_1: EF hand; 98.3 5.8E-07 1.3E-11 48.3 3.0 27 165-191 2-28 (29)
50 cd05026 S-100Z S-100Z: S-100Z 98.3 4.4E-06 9.6E-11 57.9 8.3 69 79-148 9-82 (93)
51 PF00036 EF-hand_1: EF hand; 98.3 5.7E-07 1.2E-11 48.3 2.7 25 122-146 3-27 (29)
52 PF13833 EF-hand_8: EF-hand do 98.3 3.2E-06 6.9E-11 52.3 6.1 51 95-146 1-52 (54)
53 KOG2562 Protein phosphatase 2 98.3 1.2E-05 2.7E-10 69.4 11.4 178 5-187 226-420 (493)
54 cd05027 S-100B S-100B: S-100B 98.3 9.1E-06 2E-10 55.7 8.5 68 78-148 6-80 (88)
55 KOG0030 Myosin essential light 98.2 2.6E-05 5.7E-10 57.0 10.6 110 74-191 5-116 (152)
56 cd05024 S-100A10 S-100A10: A s 98.2 2.5E-06 5.5E-11 58.4 5.0 67 121-192 10-77 (91)
57 cd00213 S-100 S-100: S-100 dom 98.2 1E-05 2.2E-10 55.3 8.0 71 76-148 4-80 (88)
58 cd05029 S-100A6 S-100A6: S-100 98.2 1.7E-05 3.8E-10 54.3 8.7 70 78-148 8-80 (88)
59 cd00252 SPARC_EC SPARC_EC; ext 98.2 7E-06 1.5E-10 59.1 7.0 64 75-145 43-106 (116)
60 cd00052 EH Eps15 homology doma 98.2 1.1E-05 2.5E-10 51.7 7.2 61 83-148 2-62 (67)
61 cd05025 S-100A1 S-100A1: S-100 98.2 1.9E-05 4.2E-10 54.5 8.5 69 79-149 8-82 (92)
62 KOG4666 Predicted phosphate ac 98.1 7.6E-06 1.7E-10 67.7 7.1 108 80-198 259-366 (412)
63 KOG0041 Predicted Ca2+-binding 98.1 5.8E-06 1.3E-10 64.0 5.8 61 122-190 102-162 (244)
64 cd05023 S-100A11 S-100A11: S-1 98.1 2.6E-05 5.7E-10 53.5 8.3 70 77-148 6-81 (89)
65 cd05031 S-100A10_like S-100A10 98.1 2.5E-05 5.3E-10 54.2 7.9 66 79-146 7-78 (94)
66 cd05030 calgranulins Calgranul 98.1 3E-05 6.4E-10 53.2 7.7 71 78-148 6-80 (88)
67 KOG4065 Uncharacterized conser 98.0 2.1E-05 4.5E-10 55.6 6.3 65 124-188 72-142 (144)
68 PRK12309 transaldolase/EF-hand 98.0 6.4E-05 1.4E-09 65.2 10.6 49 122-191 337-385 (391)
69 cd00051 EFh EF-hand, calcium b 98.0 3.3E-05 7.1E-10 48.0 6.6 61 82-145 2-62 (63)
70 KOG0041 Predicted Ca2+-binding 97.9 0.0001 2.2E-09 57.2 9.2 108 73-188 92-200 (244)
71 PF13202 EF-hand_5: EF hand; P 97.9 1.6E-05 3.4E-10 41.1 2.9 24 166-189 2-25 (25)
72 KOG2562 Protein phosphatase 2 97.9 4.5E-05 9.7E-10 66.0 7.1 181 7-204 142-356 (493)
73 KOG4251 Calcium binding protei 97.8 0.00016 3.5E-09 57.8 9.1 179 6-189 103-307 (362)
74 PF13405 EF-hand_6: EF-hand do 97.8 1.8E-05 3.8E-10 43.1 2.7 25 122-146 3-27 (31)
75 KOG4251 Calcium binding protei 97.8 0.00014 2.9E-09 58.3 7.6 141 40-190 98-263 (362)
76 KOG0032 Ca2+/calmodulin-depend 97.7 4.1E-05 8.8E-10 66.5 4.7 33 1-33 265-297 (382)
77 PF13202 EF-hand_5: EF hand; P 97.7 2.9E-05 6.2E-10 40.1 2.2 21 124-144 4-24 (25)
78 PF12763 EF-hand_4: Cytoskelet 97.7 0.00013 2.8E-09 51.5 5.9 69 74-148 4-72 (104)
79 PF12763 EF-hand_4: Cytoskelet 97.6 0.00022 4.8E-09 50.3 6.3 83 121-218 12-94 (104)
80 KOG2643 Ca2+ binding protein, 97.6 0.00015 3.3E-09 62.4 5.9 120 56-192 212-347 (489)
81 KOG0751 Mitochondrial aspartat 97.6 0.00026 5.7E-09 61.9 7.3 93 49-148 42-137 (694)
82 KOG0615 Serine/threonine prote 97.6 3.8E-05 8.2E-10 65.9 2.0 37 1-37 409-445 (475)
83 PF13405 EF-hand_6: EF-hand do 97.4 0.0002 4.3E-09 38.9 2.9 27 165-191 2-28 (31)
84 KOG0599 Phosphorylase kinase g 97.3 9.3E-05 2E-09 60.7 1.6 32 1-32 255-286 (411)
85 PRK12309 transaldolase/EF-hand 97.3 0.00088 1.9E-08 58.2 6.9 54 80-149 334-387 (391)
86 PLN03225 Serine/threonine-prot 97.3 0.0012 2.6E-08 60.4 8.1 29 5-33 426-454 (566)
87 cd05024 S-100A10 S-100A10: A s 97.2 0.0031 6.8E-08 43.2 8.1 67 79-148 7-77 (91)
88 PF10591 SPARC_Ca_bdg: Secrete 97.1 0.00024 5.2E-09 51.0 1.9 58 120-187 55-112 (113)
89 KOG0588 Serine/threonine prote 97.1 0.0012 2.6E-08 60.1 6.1 32 1-32 235-266 (786)
90 KOG0040 Ca2+-binding actin-bun 96.9 0.012 2.7E-07 57.8 11.8 107 71-186 2244-2356(2399)
91 KOG0660 Mitogen-activated prot 96.9 0.00054 1.2E-08 57.9 2.5 32 1-32 282-313 (359)
92 PF14788 EF-hand_10: EF hand; 96.9 0.0037 8.1E-08 37.8 5.2 47 136-190 2-48 (51)
93 KOG0040 Ca2+-binding actin-bun 96.8 0.0094 2E-07 58.6 9.8 66 119-190 2253-2323(2399)
94 PF14658 EF-hand_9: EF-hand do 96.8 0.0047 1E-07 39.6 5.5 60 85-146 3-63 (66)
95 KOG0038 Ca2+-binding kinase in 96.7 0.015 3.3E-07 43.1 8.4 97 43-145 74-175 (189)
96 KOG0604 MAP kinase-activated p 96.6 0.00095 2.1E-08 55.5 1.8 31 2-32 295-325 (400)
97 smart00054 EFh EF-hand, calciu 96.6 0.0032 6.9E-08 32.2 3.4 26 166-191 3-28 (29)
98 KOG0666 Cyclin C-dependent kin 96.6 0.0012 2.6E-08 55.2 2.4 35 2-36 310-344 (438)
99 KOG0046 Ca2+-binding actin-bun 96.6 0.0053 1.1E-07 54.3 6.3 61 124-190 24-84 (627)
100 cd07876 STKc_JNK2 Catalytic do 96.5 0.0018 3.9E-08 55.5 2.8 31 3-33 289-319 (359)
101 PF14788 EF-hand_10: EF hand; 96.5 0.01 2.2E-07 35.9 5.1 48 99-147 2-49 (51)
102 cd07875 STKc_JNK1 Catalytic do 96.5 0.0018 4E-08 55.5 2.7 31 3-33 292-322 (364)
103 KOG0751 Mitochondrial aspartat 96.4 0.11 2.3E-06 46.1 13.0 129 11-147 43-207 (694)
104 cd07874 STKc_JNK3 Catalytic do 96.4 0.0023 5.1E-08 54.6 2.6 31 3-33 285-315 (355)
105 PTZ00036 glycogen synthase kin 96.3 0.0018 4E-08 57.3 1.9 32 2-33 324-355 (440)
106 PF10591 SPARC_Ca_bdg: Secrete 96.3 0.0025 5.4E-08 45.7 2.1 62 77-143 51-112 (113)
107 cd07853 STKc_NLK Catalytic dom 96.2 0.0026 5.5E-08 54.8 2.2 34 2-35 261-294 (372)
108 cd07878 STKc_p38beta_MAPK11 Ca 96.2 0.003 6.6E-08 53.6 2.4 31 3-33 272-302 (343)
109 KOG0663 Protein kinase PITSLRE 96.2 0.0032 7E-08 53.1 2.4 33 2-34 334-366 (419)
110 cd07859 STKc_TDY_MAPK_plant Ca 96.2 0.0035 7.6E-08 52.8 2.7 33 2-34 263-295 (338)
111 KOG0377 Protein serine/threoni 96.2 0.017 3.6E-07 50.3 6.6 63 82-146 549-614 (631)
112 KOG2243 Ca2+ release channel ( 96.1 0.031 6.6E-07 54.8 8.6 58 124-190 4062-4119(5019)
113 KOG0575 Polo-like serine/threo 96.1 0.0036 7.8E-08 56.3 2.4 32 1-32 241-272 (592)
114 KOG0046 Ca2+-binding actin-bun 96.0 0.03 6.4E-07 49.7 7.3 75 71-148 10-86 (627)
115 KOG1167 Serine/threonine prote 96.0 0.0044 9.5E-08 53.4 2.2 36 2-37 354-389 (418)
116 smart00054 EFh EF-hand, calciu 95.9 0.0078 1.7E-07 30.6 2.4 24 123-146 4-27 (29)
117 KOG0665 Jun-N-terminal kinase 95.9 0.0044 9.6E-08 51.9 1.9 30 4-33 285-314 (369)
118 KOG0669 Cyclin T-dependent kin 95.8 0.011 2.4E-07 48.2 3.9 31 2-32 288-318 (376)
119 cd07850 STKc_JNK Catalytic dom 95.8 0.0047 1E-07 52.7 1.8 30 4-33 286-315 (353)
120 cd07858 STKc_TEY_MAPK_plant Ca 95.7 0.0066 1.4E-07 51.5 2.3 32 2-33 264-295 (337)
121 cd07851 STKc_p38 Catalytic dom 95.7 0.0074 1.6E-07 51.3 2.5 32 2-33 271-302 (343)
122 cd07854 STKc_MAPK4_6 Catalytic 95.6 0.0087 1.9E-07 50.9 2.7 32 2-33 273-304 (342)
123 KOG0603 Ribosomal protein S6 k 95.5 0.0071 1.5E-07 54.7 2.0 32 1-32 535-566 (612)
124 KOG1707 Predicted Ras related/ 95.3 0.15 3.3E-06 46.1 9.4 146 35-190 187-376 (625)
125 cd06650 PKc_MEK1 Catalytic dom 95.3 0.01 2.2E-07 50.3 2.1 32 3-34 273-304 (333)
126 KOG4578 Uncharacterized conser 95.2 0.014 3.1E-07 48.8 2.6 66 122-194 336-401 (421)
127 PF09279 EF-hand_like: Phospho 95.2 0.072 1.6E-06 35.7 5.7 66 123-192 4-70 (83)
128 cd07834 STKc_MAPK Catalytic do 95.2 0.013 2.8E-07 49.3 2.4 32 2-33 262-293 (330)
129 cd07849 STKc_ERK1_2_like Catal 95.2 0.013 2.8E-07 49.6 2.4 32 2-33 265-296 (336)
130 KOG0198 MEKK and related serin 95.1 0.014 3.1E-07 49.3 2.5 34 1-34 248-281 (313)
131 KOG0585 Ca2+/calmodulin-depend 95.1 0.011 2.3E-07 52.2 1.7 31 2-32 345-375 (576)
132 KOG0579 Ste20-like serine/thre 95.1 0.024 5.3E-07 51.9 3.9 37 2-38 262-298 (1187)
133 KOG0607 MAP kinase-interacting 95.0 0.0082 1.8E-07 50.6 0.7 34 1-34 333-366 (463)
134 PHA03210 serine/threonine kina 95.0 0.016 3.4E-07 52.3 2.6 31 4-34 429-459 (501)
135 cd07879 STKc_p38delta_MAPK13 C 95.0 0.016 3.5E-07 49.2 2.5 31 3-33 271-301 (342)
136 KOG0659 Cdk activating kinase 95.0 0.013 2.9E-07 48.0 1.8 36 2-37 254-289 (318)
137 cd07880 STKc_p38gamma_MAPK12 C 94.9 0.017 3.6E-07 49.2 2.4 31 3-33 272-302 (343)
138 PF09069 EF-hand_3: EF-hand; 94.9 0.21 4.4E-06 34.2 7.2 72 121-195 5-79 (90)
139 cd05612 STKc_PRKX_like Catalyt 94.9 0.014 3E-07 48.4 1.8 34 2-35 222-260 (291)
140 KOG0583 Serine/threonine prote 94.9 0.018 3.8E-07 50.0 2.3 33 2-34 248-280 (370)
141 KOG1955 Ral-GTPase effector RA 94.8 0.073 1.6E-06 47.1 5.8 83 72-159 223-306 (737)
142 cd05571 STKc_PKB Catalytic dom 94.8 0.017 3.7E-07 48.6 2.0 35 2-36 219-258 (323)
143 cd07855 STKc_ERK5 Catalytic do 94.7 0.02 4.2E-07 48.5 2.2 33 2-34 267-299 (334)
144 KOG0667 Dual-specificity tyros 94.7 0.02 4.3E-07 51.9 2.1 28 6-33 479-506 (586)
145 cd07857 STKc_MPK1 Catalytic do 94.6 0.024 5.3E-07 47.8 2.6 32 2-33 265-296 (332)
146 cd05588 STKc_aPKC Catalytic do 94.6 0.02 4.4E-07 48.4 2.0 34 2-35 229-268 (329)
147 PTZ00263 protein kinase A cata 94.3 0.026 5.7E-07 47.7 2.0 33 2-34 239-276 (329)
148 cd07877 STKc_p38alpha_MAPK14 C 94.2 0.029 6.4E-07 47.7 2.3 32 2-33 273-304 (345)
149 cd05590 STKc_nPKC_eta Catalyti 94.2 0.025 5.5E-07 47.6 1.8 35 2-36 220-260 (320)
150 cd05614 STKc_MSK2_N N-terminal 94.2 0.028 6.1E-07 47.4 2.1 34 2-35 235-273 (332)
151 cd05570 STKc_PKC Catalytic dom 94.2 0.026 5.5E-07 47.5 1.8 33 2-34 220-257 (318)
152 KOG1029 Endocytic adaptor prot 94.2 0.63 1.4E-05 43.5 10.5 57 124-190 200-256 (1118)
153 cd05585 STKc_YPK1_like Catalyt 94.1 0.028 6E-07 47.1 1.8 34 2-35 217-253 (312)
154 KOG3555 Ca2+-binding proteogly 94.1 0.18 3.9E-06 42.6 6.4 106 74-193 201-312 (434)
155 cd05591 STKc_nPKC_epsilon Cata 93.9 0.035 7.6E-07 46.7 2.0 34 2-35 220-260 (321)
156 KOG4065 Uncharacterized conser 93.9 0.25 5.4E-06 35.2 5.9 68 73-144 62-142 (144)
157 KOG0661 MAPK related serine/th 93.8 0.049 1.1E-06 48.1 2.8 31 2-32 264-294 (538)
158 KOG1027 Serine/threonine prote 93.8 0.15 3.2E-06 48.0 5.9 29 4-32 742-770 (903)
159 KOG3866 DNA-binding protein of 93.7 0.32 6.9E-06 40.7 7.1 68 124-191 249-324 (442)
160 cd05601 STKc_CRIK Catalytic do 93.7 0.045 9.7E-07 46.1 2.3 33 2-35 237-269 (330)
161 cd06633 STKc_TAO3 Catalytic do 93.6 0.076 1.6E-06 44.4 3.5 33 3-35 247-279 (313)
162 cd07856 STKc_Sty1_Hog1 Catalyt 93.5 0.058 1.3E-06 45.6 2.7 30 3-32 262-291 (328)
163 cd07852 STKc_MAPK15 Catalytic 93.5 0.052 1.1E-06 45.9 2.4 33 2-34 268-300 (337)
164 cd05593 STKc_PKB_gamma Catalyt 93.4 0.045 9.7E-07 46.3 1.9 34 2-35 219-257 (328)
165 KOG0600 Cdc2-related protein k 93.4 0.058 1.3E-06 47.9 2.6 32 1-32 372-403 (560)
166 KOG0610 Putative serine/threon 93.4 0.047 1E-06 47.4 1.8 31 2-32 361-395 (459)
167 KOG1290 Serine/threonine prote 93.4 0.049 1.1E-06 48.3 2.0 30 7-36 528-557 (590)
168 cd05620 STKc_nPKC_delta Cataly 93.2 0.05 1.1E-06 45.7 1.8 34 2-35 220-254 (316)
169 cd05596 STKc_ROCK Catalytic do 93.2 0.061 1.3E-06 46.4 2.4 33 2-34 275-309 (370)
170 cd05594 STKc_PKB_alpha Catalyt 93.1 0.047 1E-06 46.0 1.6 34 2-35 220-258 (325)
171 cd06634 STKc_TAO2 Catalytic do 93.1 0.075 1.6E-06 44.3 2.8 32 3-34 241-272 (308)
172 KOG4666 Predicted phosphate ac 93.1 0.24 5.3E-06 41.6 5.6 76 124-213 264-339 (412)
173 cd05618 STKc_aPKC_iota Catalyt 93.1 0.055 1.2E-06 45.7 2.0 34 2-35 229-268 (329)
174 cd05586 STKc_Sck1_like Catalyt 93.1 0.058 1.3E-06 45.5 2.1 34 2-35 222-259 (330)
175 cd05619 STKc_nPKC_theta Cataly 93.1 0.055 1.2E-06 45.5 1.9 34 2-35 220-254 (316)
176 cd06607 STKc_TAO Catalytic dom 93.1 0.096 2.1E-06 43.6 3.3 32 3-34 241-272 (307)
177 PLN00181 protein SPA1-RELATED; 93.1 0.12 2.5E-06 49.4 4.3 31 4-34 240-270 (793)
178 PTZ00426 cAMP-dependent protei 93.0 0.056 1.2E-06 46.0 1.9 34 2-35 252-290 (340)
179 KOG0596 Dual specificity; seri 92.9 0.13 2.8E-06 46.4 4.0 34 5-38 603-636 (677)
180 cd05600 STKc_Sid2p_Dbf2p Catal 92.8 0.073 1.6E-06 44.9 2.3 34 2-35 230-263 (333)
181 cd05573 STKc_ROCK_NDR_like Cat 92.8 0.074 1.6E-06 45.0 2.3 34 2-36 258-292 (350)
182 cd05587 STKc_cPKC Catalytic do 92.7 0.063 1.4E-06 45.2 1.8 34 2-35 225-263 (324)
183 cd05584 STKc_p70S6K Catalytic 92.6 0.075 1.6E-06 44.7 2.1 34 2-35 224-262 (323)
184 cd05595 STKc_PKB_beta Catalyti 92.5 0.057 1.2E-06 45.5 1.2 35 2-36 219-258 (323)
185 cd05582 STKc_RSK_N N-terminal 92.4 0.079 1.7E-06 44.4 2.0 34 2-35 222-260 (318)
186 cd05575 STKc_SGK Catalytic dom 92.2 0.085 1.8E-06 44.4 1.9 34 2-35 220-257 (323)
187 cd05617 STKc_aPKC_zeta Catalyt 92.0 0.08 1.7E-06 44.7 1.6 34 2-35 227-266 (327)
188 cd05589 STKc_PKN Catalytic dom 91.8 0.11 2.3E-06 43.7 2.1 34 2-35 225-263 (324)
189 cd05610 STKc_MASTL Catalytic d 91.5 0.1 2.2E-06 48.9 1.8 33 3-35 608-640 (669)
190 KOG0582 Ste20-like serine/thre 91.5 0.12 2.7E-06 45.4 2.1 29 4-32 268-296 (516)
191 KOG0593 Predicted protein kina 91.5 0.12 2.6E-06 43.4 1.9 31 2-32 257-287 (396)
192 cd05580 STKc_PKA Catalytic dom 91.2 0.13 2.8E-06 42.4 1.9 35 2-36 222-261 (290)
193 cd05599 STKc_NDR_like Catalyti 90.9 0.15 3.2E-06 43.6 2.1 33 2-35 267-302 (364)
194 KOG0042 Glycerol-3-phosphate d 90.7 0.54 1.2E-05 42.6 5.3 62 121-190 595-656 (680)
195 KOG4347 GTPase-activating prot 90.6 1.4 3.1E-05 40.4 8.0 113 63-185 487-612 (671)
196 KOG0658 Glycogen synthase kina 90.2 0.18 3.9E-06 43.0 2.0 33 1-33 278-310 (364)
197 KOG1029 Endocytic adaptor prot 90.2 0.71 1.5E-05 43.2 5.7 66 77-147 192-257 (1118)
198 KOG0169 Phosphoinositide-speci 90.2 6.4 0.00014 37.0 11.8 139 43-191 136-274 (746)
199 PLN02952 phosphoinositide phos 90.1 3.7 8E-05 37.9 10.3 93 95-191 13-110 (599)
200 cd05604 STKc_SGK3 Catalytic do 90.0 0.17 3.7E-06 42.5 1.7 34 2-35 220-257 (325)
201 cd05609 STKc_MAST Catalytic do 90.0 0.21 4.5E-06 41.5 2.2 37 3-39 244-283 (305)
202 cd06635 STKc_TAO1 Catalytic do 90.0 0.21 4.5E-06 41.8 2.2 30 3-32 251-280 (317)
203 KOG0201 Serine/threonine prote 89.9 0.28 6.1E-06 42.9 2.9 32 3-34 237-268 (467)
204 KOG0592 3-phosphoinositide-dep 89.7 0.27 5.9E-06 44.2 2.7 31 2-32 311-341 (604)
205 cd05616 STKc_cPKC_beta Catalyt 89.4 0.21 4.6E-06 41.9 1.8 34 2-35 225-263 (323)
206 cd05621 STKc_ROCK2 Catalytic d 89.2 0.29 6.3E-06 42.2 2.5 33 2-34 275-309 (370)
207 cd05626 STKc_LATS2 Catalytic d 89.0 0.32 7E-06 41.9 2.7 34 2-35 276-311 (381)
208 cd05625 STKc_LATS1 Catalytic d 88.9 0.25 5.5E-06 42.5 2.0 35 2-37 276-313 (382)
209 PF05042 Caleosin: Caleosin re 88.7 1.2 2.5E-05 34.3 5.1 36 162-197 95-130 (174)
210 cd05592 STKc_nPKC_theta_delta 88.6 0.26 5.7E-06 41.3 1.8 34 2-35 220-254 (316)
211 PF09068 EF-hand_2: EF hand; 88.2 3 6.5E-05 30.4 6.9 83 63-145 24-123 (127)
212 cd05615 STKc_cPKC_alpha Cataly 88.0 0.34 7.4E-06 40.8 2.1 34 2-35 225-263 (323)
213 PTZ00283 serine/threonine prot 88.0 0.31 6.8E-06 43.9 2.0 32 2-33 270-301 (496)
214 cd05629 STKc_NDR_like_fungal C 87.9 0.34 7.4E-06 41.7 2.1 32 2-34 276-310 (377)
215 KOG0039 Ferric reductase, NADH 87.8 1.8 3.9E-05 40.5 6.9 94 96-197 2-95 (646)
216 cd05627 STKc_NDR2 Catalytic do 87.7 0.39 8.4E-06 41.0 2.3 33 2-35 264-299 (360)
217 cd05598 STKc_LATS Catalytic do 87.4 0.36 7.9E-06 41.4 2.0 35 2-37 272-309 (376)
218 cd05602 STKc_SGK1 Catalytic do 87.3 0.33 7.1E-06 40.8 1.6 34 2-35 220-257 (325)
219 cd05597 STKc_DMPK_like Catalyt 86.8 0.55 1.2E-05 39.7 2.7 33 2-34 237-271 (331)
220 KOG1955 Ral-GTPase effector RA 86.7 1.3 2.8E-05 39.5 4.9 59 122-190 234-292 (737)
221 PTZ00267 NIMA-related protein 85.9 0.43 9.4E-06 42.7 1.7 32 2-33 296-327 (478)
222 KOG1035 eIF-2alpha kinase GCN2 85.6 0.72 1.6E-05 45.4 3.0 31 3-33 845-875 (1351)
223 KOG0597 Serine-threonine prote 85.2 0.46 1E-05 43.3 1.5 31 2-32 224-254 (808)
224 PF05042 Caleosin: Caleosin re 84.4 11 0.00024 29.0 8.5 62 124-189 101-164 (174)
225 cd05623 STKc_MRCK_alpha Cataly 84.4 0.74 1.6E-05 38.8 2.4 34 2-35 237-272 (332)
226 KOG4578 Uncharacterized conser 84.0 0.73 1.6E-05 38.9 2.0 60 81-145 334-396 (421)
227 cd05628 STKc_NDR1 Catalytic do 83.8 0.93 2E-05 38.8 2.7 34 2-36 264-300 (363)
228 cd05603 STKc_SGK2 Catalytic do 83.3 0.72 1.6E-05 38.6 1.8 34 3-36 221-258 (321)
229 PTZ00266 NIMA-related protein 83.0 0.64 1.4E-05 45.4 1.5 31 2-32 268-298 (1021)
230 PF09279 EF-hand_like: Phospho 82.9 3.2 6.8E-05 27.5 4.6 59 84-145 4-67 (83)
231 KOG0598 Ribosomal protein S6 k 82.5 0.63 1.4E-05 39.8 1.1 40 1-40 249-292 (357)
232 PF08726 EFhand_Ca_insen: Ca2+ 81.5 1.2 2.5E-05 28.9 1.9 26 119-145 6-31 (69)
233 KOG1707 Predicted Ras related/ 81.2 6.6 0.00014 36.0 7.1 34 163-196 315-348 (625)
234 KOG4236 Serine/threonine prote 81.2 0.55 1.2E-05 42.5 0.4 34 1-34 791-824 (888)
235 KOG0035 Ca2+-binding actin-bun 79.8 7.4 0.00016 37.5 7.2 102 39-143 743-848 (890)
236 KOG3555 Ca2+-binding proteogly 79.6 2.3 4.9E-05 36.3 3.4 57 82-145 252-308 (434)
237 KOG4347 GTPase-activating prot 79.0 1.7 3.8E-05 39.9 2.8 56 82-141 557-612 (671)
238 cd05622 STKc_ROCK1 Catalytic d 78.4 1.6 3.5E-05 37.6 2.4 34 2-35 275-310 (371)
239 PF04876 Tenui_NCP: Tenuivirus 77.3 10 0.00022 28.3 5.9 69 133-204 97-173 (175)
240 KOG0586 Serine/threonine prote 77.2 1.8 3.8E-05 39.6 2.3 33 1-33 278-310 (596)
241 KOG0605 NDR and related serine 77.1 1.4 3E-05 39.7 1.6 32 1-33 415-449 (550)
242 KOG0035 Ca2+-binding actin-bun 77.0 6.1 0.00013 38.0 5.8 66 123-192 751-817 (890)
243 KOG4717 Serine/threonine prote 76.8 4.8 0.0001 36.6 4.8 29 4-32 245-273 (864)
244 KOG3866 DNA-binding protein of 76.7 7.4 0.00016 32.8 5.6 71 75-145 225-322 (442)
245 cd05624 STKc_MRCK_beta Catalyt 75.5 2.2 4.8E-05 35.9 2.4 33 2-34 237-271 (331)
246 PF00404 Dockerin_1: Dockerin 71.3 7.2 0.00016 19.0 2.6 16 129-144 1-16 (21)
247 cd00086 homeodomain Homeodomai 70.6 15 0.00032 22.1 4.8 40 42-86 12-51 (59)
248 PF09373 PMBR: Pseudomurein-bi 70.6 6.2 0.00014 21.4 2.6 22 177-198 2-23 (33)
249 KOG0169 Phosphoinositide-speci 70.4 41 0.00088 31.9 9.3 107 78-193 134-252 (746)
250 KOG0694 Serine/threonine prote 68.0 3.7 8E-05 38.2 2.1 39 1-39 591-634 (694)
251 PF09068 EF-hand_2: EF hand; 67.7 19 0.00042 26.2 5.5 67 124-190 46-124 (127)
252 PF05517 p25-alpha: p25-alpha 66.3 16 0.00034 27.5 5.0 58 128-190 11-68 (154)
253 KOG4004 Matricellular protein 65.6 4.4 9.6E-05 31.9 1.9 58 122-189 190-248 (259)
254 PF00046 Homeobox: Homeobox do 64.6 13 0.00028 22.4 3.6 38 43-85 13-50 (57)
255 smart00389 HOX Homeodomain. DN 64.5 24 0.00051 21.0 4.8 40 41-85 11-50 (56)
256 PF08414 NADPH_Ox: Respiratory 64.5 27 0.00059 24.3 5.3 60 79-146 29-91 (100)
257 KOG0690 Serine/threonine prote 63.7 4.3 9.3E-05 34.8 1.6 35 1-35 391-430 (516)
258 KOG4279 Serine/threonine prote 63.3 4.5 9.8E-05 38.2 1.8 31 2-32 805-835 (1226)
259 KOG0616 cAMP-dependent protein 63.2 3.4 7.4E-05 34.8 0.9 35 2-36 265-304 (355)
260 KOG0664 Nemo-like MAPK-related 62.3 6.6 0.00014 32.9 2.4 29 4-32 318-346 (449)
261 cd05100 PTKc_FGFR3 Catalytic d 61.2 6.5 0.00014 33.0 2.3 27 3-29 263-289 (334)
262 KOG0042 Glycerol-3-phosphate d 61.0 20 0.00044 32.9 5.3 73 73-148 586-658 (680)
263 cd02977 ArsC_family Arsenate R 59.9 11 0.00024 26.1 3.0 64 124-197 25-91 (105)
264 PF03705 CheR_N: CheR methyltr 58.9 22 0.00047 21.4 3.9 52 138-194 2-56 (57)
265 KOG0584 Serine/threonine prote 58.1 7.2 0.00016 35.9 2.1 32 2-34 270-301 (632)
266 PF08976 DUF1880: Domain of un 57.4 10 0.00023 27.1 2.4 31 156-190 4-34 (118)
267 KOG0998 Synaptic vesicle prote 57.1 5.4 0.00012 38.6 1.2 59 124-192 288-346 (847)
268 PF14513 DAG_kinase_N: Diacylg 56.5 17 0.00036 27.0 3.5 53 58-111 6-61 (138)
269 TIGR01848 PHA_reg_PhaR polyhyd 56.1 41 0.0009 23.7 5.1 61 126-190 10-76 (107)
270 KOG0983 Mitogen-activated prot 53.9 9.7 0.00021 32.0 2.0 27 6-32 326-352 (391)
271 PF08414 NADPH_Ox: Respiratory 52.6 51 0.0011 22.9 5.1 57 124-190 35-91 (100)
272 KOG0574 STE20-like serine/thre 51.2 6.1 0.00013 33.5 0.5 31 3-33 257-287 (502)
273 PF11569 Homez: Homeodomain le 50.8 27 0.00059 21.6 3.2 36 45-85 13-48 (56)
274 KOG1265 Phospholipase C [Lipid 50.1 2.6E+02 0.0057 27.5 11.8 65 124-192 226-300 (1189)
275 KOG0589 Serine/threonine prote 48.8 14 0.0003 32.8 2.3 30 3-32 231-261 (426)
276 PF07879 PHB_acc_N: PHB/PHA ac 48.3 15 0.00032 23.3 1.8 21 126-146 10-30 (64)
277 PF01023 S_100: S-100/ICaBP ty 47.5 55 0.0012 18.9 4.3 32 79-110 5-36 (44)
278 KOG3442 Uncharacterized conser 47.5 49 0.0011 24.0 4.5 47 131-182 51-97 (132)
279 cd03035 ArsC_Yffb Arsenate Red 47.3 24 0.00051 24.7 3.0 65 124-197 25-89 (105)
280 cd07313 terB_like_2 tellurium 47.3 88 0.0019 21.2 6.4 80 57-144 13-97 (104)
281 PRK13344 spxA transcriptional 47.3 33 0.00072 25.1 3.8 66 124-197 26-91 (132)
282 cd03032 ArsC_Spx Arsenate Redu 47.0 48 0.001 23.3 4.6 65 125-197 27-91 (115)
283 KOG0577 Serine/threonine prote 46.3 35 0.00075 32.0 4.4 27 6-32 254-281 (948)
284 cd05108 PTKc_EGFR Catalytic do 46.1 15 0.00032 30.5 2.1 27 3-29 238-264 (316)
285 cd05110 PTKc_HER4 Catalytic do 42.8 19 0.00042 29.6 2.3 27 3-29 238-264 (303)
286 cd03034 ArsC_ArsC Arsenate Red 40.8 63 0.0014 22.7 4.4 63 125-198 26-91 (112)
287 PRK12559 transcriptional regul 40.5 45 0.00097 24.3 3.6 66 124-197 26-91 (131)
288 PF03979 Sigma70_r1_1: Sigma-7 40.4 49 0.0011 21.9 3.5 28 132-165 18-45 (82)
289 KOG4004 Matricellular protein 40.4 13 0.00028 29.3 0.8 54 86-145 193-248 (259)
290 KOG4286 Dystrophin-like protei 40.1 1.6E+02 0.0034 28.3 7.6 118 63-190 403-532 (966)
291 PF05920 Homeobox_KN: Homeobox 40.0 45 0.00097 18.9 2.8 26 59-84 10-35 (40)
292 PLN02230 phosphoinositide phos 39.8 1.7E+02 0.0037 27.4 7.9 69 119-191 29-102 (598)
293 KOG2871 Uncharacterized conser 39.6 24 0.00051 30.6 2.3 61 120-187 310-370 (449)
294 PF05872 DUF853: Bacterial pro 39.4 75 0.0016 28.7 5.4 134 60-212 106-247 (502)
295 PF08349 DUF1722: Protein of u 38.5 80 0.0017 22.4 4.6 69 137-212 47-115 (117)
296 PLN02952 phosphoinositide phos 38.0 2.8E+02 0.0061 26.0 9.0 83 58-146 15-109 (599)
297 PRK10236 hypothetical protein; 37.6 2.2E+02 0.0049 23.1 8.9 27 2-28 18-44 (237)
298 KOG1954 Endocytosis/signaling 37.0 44 0.00096 29.3 3.5 45 133-187 457-501 (532)
299 KOG0998 Synaptic vesicle prote 36.2 23 0.0005 34.4 1.9 71 73-148 276-346 (847)
300 PF09851 SHOCT: Short C-termin 35.8 72 0.0016 16.9 3.2 22 78-107 4-25 (31)
301 PF00427 PBS_linker_poly: Phyc 34.8 97 0.0021 22.7 4.6 23 177-199 42-64 (131)
302 PRK01655 spxA transcriptional 34.7 84 0.0018 22.8 4.3 66 124-197 26-91 (131)
303 PRK09430 djlA Dna-J like membr 34.5 2.7E+02 0.0058 23.0 12.5 100 57-166 69-173 (267)
304 PF02864 STAT_bind: STAT prote 34.4 84 0.0018 25.9 4.6 54 135-188 178-232 (254)
305 PLN02223 phosphoinositide phos 34.1 2.8E+02 0.0062 25.5 8.3 75 117-192 14-93 (537)
306 COG3793 TerB Tellurite resista 33.8 99 0.0021 23.1 4.5 15 178-192 85-99 (144)
307 KOG0986 G protein-coupled rece 33.7 23 0.0005 31.9 1.3 33 2-34 414-451 (591)
308 KOG1240 Protein kinase contain 33.5 30 0.00066 34.7 2.2 26 4-29 266-291 (1431)
309 COG4359 Uncharacterized conser 33.1 1.7E+02 0.0038 23.1 5.8 79 94-192 9-88 (220)
310 cd03036 ArsC_like Arsenate Red 32.4 75 0.0016 22.2 3.6 67 124-197 25-92 (111)
311 KOG0587 Traf2- and Nck-interac 31.9 51 0.0011 32.0 3.3 43 4-46 257-299 (953)
312 PF05517 p25-alpha: p25-alpha 31.7 2.2E+02 0.0048 21.3 9.9 85 80-168 2-88 (154)
313 KOG2301 Voltage-gated Ca2+ cha 31.7 31 0.00067 35.9 2.0 69 117-190 1415-1483(1592)
314 PRK10026 arsenate reductase; P 30.3 91 0.002 23.2 3.9 56 135-197 38-93 (141)
315 PF12872 OST-HTH: OST-HTH/LOTU 28.9 1.5E+02 0.0033 18.5 5.2 27 161-187 29-55 (74)
316 PF12174 RST: RCD1-SRO-TAF4 (R 27.9 1.1E+02 0.0023 19.8 3.4 32 74-110 22-53 (70)
317 PF13373 DUF2407_C: DUF2407 C- 27.1 80 0.0017 23.5 3.1 24 67-91 5-28 (140)
318 cd08330 CARD_ASC_NALP1 Caspase 26.5 1.9E+02 0.0041 19.1 4.6 53 132-197 26-79 (82)
319 TIGR00014 arsC arsenate reduct 26.4 1.5E+02 0.0032 20.9 4.3 63 126-198 27-92 (114)
320 TIGR01616 nitro_assoc nitrogen 26.4 1.2E+02 0.0026 21.9 3.9 63 125-197 28-90 (126)
321 PF02269 TFIID-18kDa: Transcri 26.3 44 0.00096 22.8 1.5 37 161-197 36-72 (93)
322 KOG1151 Tousled-like protein k 26.2 36 0.00079 30.6 1.3 34 1-34 713-746 (775)
323 PLN02222 phosphoinositide phos 25.8 3E+02 0.0065 25.7 7.1 66 119-192 25-91 (581)
324 cd03033 ArsC_15kD Arsenate Red 25.2 1.4E+02 0.003 21.1 4.0 64 124-197 26-89 (113)
325 KOG4301 Beta-dystrobrevin [Cyt 24.4 3.5E+02 0.0076 23.4 6.7 57 124-189 115-171 (434)
326 cd04790 HTH_Cfa-like_unk Helix 24.3 1.4E+02 0.0031 22.8 4.2 36 57-92 113-148 (172)
327 PF11848 DUF3368: Domain of un 23.8 1.6E+02 0.0035 17.2 3.8 32 132-166 14-45 (48)
328 KOG0576 Mitogen-activated prot 23.7 89 0.0019 29.7 3.3 28 7-34 249-276 (829)
329 KOG0483 Transcription factor H 23.6 1.8E+02 0.0038 23.0 4.6 35 45-84 65-99 (198)
330 PF09824 ArsR: ArsR transcript 22.9 2.6E+02 0.0057 21.2 5.1 56 135-199 86-141 (160)
331 PF12588 PSDC: Phophatidylseri 22.4 2.5E+02 0.0054 20.9 4.9 33 157-189 14-52 (141)
332 TIGR00988 hip integration host 21.7 94 0.002 20.9 2.5 46 137-186 2-49 (94)
333 PF11116 DUF2624: Protein of u 20.9 2.3E+02 0.005 19.1 4.1 28 135-166 14-41 (85)
334 PF03960 ArsC: ArsC family; I 20.8 49 0.0011 23.0 0.9 66 125-197 23-88 (110)
335 PF04558 tRNA_synt_1c_R1: Glut 20.7 69 0.0015 24.5 1.8 43 124-171 90-132 (164)
336 PLN02228 Phosphoinositide phos 20.6 4.9E+02 0.011 24.3 7.4 65 119-192 24-93 (567)
337 PF04282 DUF438: Family of unk 20.4 2.2E+02 0.0048 18.5 3.8 49 137-196 14-62 (71)
338 KOG0493 Transcription factor E 20.4 1.4E+02 0.003 24.7 3.5 48 33-85 249-296 (342)
339 PF01885 PTS_2-RNA: RNA 2'-pho 20.3 1.5E+02 0.0033 23.0 3.7 34 128-165 25-58 (186)
340 PF09682 Holin_LLH: Phage holi 20.2 3.1E+02 0.0068 19.1 5.3 48 126-173 58-105 (108)
341 cd07978 TAF13 The TATA Binding 20.0 2.8E+02 0.006 18.9 4.5 23 175-197 50-72 (92)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.85 E-value=4e-20 Score=138.95 Aligned_cols=145 Identities=21% Similarity=0.303 Sum_probs=122.9
Q ss_pred hhHHHHHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCC--CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCC
Q 027496 36 AIIEAVVITVASCFRYRPPVQKCRFDVGDLARLAAESRF--SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY 113 (222)
Q Consensus 36 ~~~~~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~--t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~ 113 (222)
.+++.-.+.++.+|...++.+++.++..++..+++.+++ +..++.++...++. |.|.|++.+|..++.....
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~------~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA------GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC------CCCccCHHHHHHHHHHHhc
Confidence 345556677888899999989999999999999998876 77778777665554 5799999999999987654
Q ss_pred CCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCc
Q 027496 114 GENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNP 193 (222)
Q Consensus 114 ~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~ 193 (222)
......+..++|+.||.|++|+|+..||+.++ +..|..+++++++.++ +.+|.|++|.|+|++|++.+...|
T Consensus 87 ~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl----~~lge~~~deev~~ll----~~~d~d~dG~i~~~eF~~~~~~~~ 158 (160)
T COG5126 87 RGDKEEELREAFKLFDKDHDGYISIGELRRVL----KSLGERLSDEEVEKLL----KEYDEDGDGEIDYEEFKKLIKDSP 158 (160)
T ss_pred cCCcHHHHHHHHHHhCCCCCceecHHHHHHHH----HhhcccCCHHHHHHHH----HhcCCCCCceEeHHHHHHHHhccC
Confidence 44455778899999999999999999999998 5779999999988888 699999999999999999997765
Q ss_pred h
Q 027496 194 S 194 (222)
Q Consensus 194 ~ 194 (222)
.
T Consensus 159 ~ 159 (160)
T COG5126 159 T 159 (160)
T ss_pred C
Confidence 3
No 2
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-19 Score=140.43 Aligned_cols=139 Identities=38% Similarity=0.566 Sum_probs=105.4
Q ss_pred HHHHHHHhhcC----CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc--CCC-----------------------
Q 027496 63 GDLARLAAESR----FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQ--APY----------------------- 113 (222)
Q Consensus 63 ~~l~~l~~~~~----~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~--~~~----------------------- 113 (222)
+++..+...++ ++..||.+|+.+|.+++.+ +++|.|+.+||..+... +|.
T Consensus 12 ~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~-~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv 90 (187)
T KOG0034|consen 12 EDLEELQMYTGDPTQFSANEIERLYERFKKLDRN-NGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFV 90 (187)
T ss_pred hhhHHHHhccCCCcccCHHHHHHHHHHHHHhccc-cccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHH
Confidence 44555555556 7777888888888887775 36677777777665421 111
Q ss_pred --------CCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHH
Q 027496 114 --------GENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEW 185 (222)
Q Consensus 114 --------~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF 185 (222)
....-....+||++||.+++|+|+.+|+..++..++...... +++.++.+++.+|.++|.|+||+|||+||
T Consensus 91 ~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~IsfeEf 169 (187)
T KOG0034|consen 91 RLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADTDGDGKISFEEF 169 (187)
T ss_pred HHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 111111335699999999999999999999998764433322 58999999999999999999999999999
Q ss_pred HHHHHhCchHHHhcCccc
Q 027496 186 KEFAVRNPSLLKNMTLPY 203 (222)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~ 203 (222)
..++.++|.+.+.|+++|
T Consensus 170 ~~~v~~~P~~~~~m~~~~ 187 (187)
T KOG0034|consen 170 CKVVEKQPDLLEKMTIRF 187 (187)
T ss_pred HHHHHcCccHHHHcCCCC
Confidence 999999999999998865
No 3
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.83 E-value=1.7e-19 Score=139.98 Aligned_cols=142 Identities=29% Similarity=0.385 Sum_probs=107.8
Q ss_pred CCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCc
Q 027496 57 KCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYI 136 (222)
Q Consensus 57 ~~~l~~~~l~~l~~~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~I 136 (222)
.|.++.++++.+.+.+.-...........|..+|.| ++|.|++.||..++.....+. ......|+|++||.||+|+|
T Consensus 41 ~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~--~dg~i~F~Efi~als~~~rGt-~eekl~w~F~lyD~dgdG~I 117 (193)
T KOG0044|consen 41 SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKN--KDGTIDFLEFICALSLTSRGT-LEEKLKWAFRLYDLDGDGYI 117 (193)
T ss_pred CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc--CCCCcCHHHHHHHHHHHcCCc-HHHHhhhhheeecCCCCceE
Confidence 346667777766666543333334444556666664 888888888887776643333 22345689999999999999
Q ss_pred cHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHHhcCc
Q 027496 137 EREEVKQMVAAILMESEIK---LPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLKNMTL 201 (222)
Q Consensus 137 s~~El~~~l~~~~~~~g~~---~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~~~~ 201 (222)
+++|+..++++++...|.. ..++..++.++.+|+.+|.|+||.||++||+..+.++|.++..+..
T Consensus 118 t~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d~~i~~~l~~ 185 (193)
T KOG0044|consen 118 TKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKADPSILRALEQ 185 (193)
T ss_pred cHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhCHHHHHHhhh
Confidence 9999999999998877741 2344577899999999999999999999999999999999998865
No 4
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.80 E-value=8.5e-19 Score=127.38 Aligned_cols=145 Identities=18% Similarity=0.316 Sum_probs=123.7
Q ss_pred CCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhhccC-----------------------------------------
Q 027496 54 PVQKCRFDVGDLARLAAESRFSVNELEALSELYKNLSCS----------------------------------------- 92 (222)
Q Consensus 54 ~~~~~~l~~~~l~~l~~~~~~t~~ei~~l~~~F~~~d~~----------------------------------------- 92 (222)
+++++..+.+.+...+.++.+|+++|-+++.+|..+.++
T Consensus 2 GNK~~vFT~eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~ri~e~FS 81 (189)
T KOG0038|consen 2 GNKQTVFTEEQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRRICEVFS 81 (189)
T ss_pred CCccceeeHHHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHHHHHHhc
Confidence 556678889999999999999999999999999998876
Q ss_pred CCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 027496 93 IIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADA 172 (222)
Q Consensus 93 ~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~ 172 (222)
-||.|.++++.|..+++.++..........++|+.||-|++++|..+++...+.++ ....+++++++.+.+++..++
T Consensus 82 eDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~l---Tr~eLs~eEv~~i~ekvieEA 158 (189)
T KOG0038|consen 82 EDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSL---TRDELSDEEVELICEKVIEEA 158 (189)
T ss_pred cCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHh
Confidence 45888899999888876543222222344669999999999999999999998754 445799999999999999999
Q ss_pred CCCCCCCccHHHHHHHHHhCchHHHhcCc
Q 027496 173 DIDKDGRINKEEWKEFAVRNPSLLKNMTL 201 (222)
Q Consensus 173 D~~~dG~Is~~eF~~~~~~~~~~~~~~~~ 201 (222)
|.||||++++.||..++.+.|++++.+++
T Consensus 159 D~DgDgkl~~~eFe~~i~raPDFlsTFHI 187 (189)
T KOG0038|consen 159 DLDGDGKLSFAEFEHVILRAPDFLSTFHI 187 (189)
T ss_pred cCCCCCcccHHHHHHHHHhCcchHhhhee
Confidence 99999999999999999999999998876
No 5
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.79 E-value=2.9e-18 Score=130.05 Aligned_cols=136 Identities=23% Similarity=0.319 Sum_probs=109.6
Q ss_pred HHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCC--CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCch---
Q 027496 43 ITVASCFRYRPPVQKCRFDVGDLARLAAESRF--SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENL--- 117 (222)
Q Consensus 43 ~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~--t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~--- 117 (222)
..+..+|...+..+++.++..++..+++..+. |..++..+ +..+|.+ ++|.|++++|..++.........
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~---~~~~D~d--g~g~I~~~eF~~l~~~~~~~~~~~~~ 82 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDL---IKEIDLD--GDGTIDFEEFLDLMEKLGEEKTDEEA 82 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHH---HHHhCCC--CCCeEcHHHHHHHHHhhhcccccccc
Confidence 33555677777777889999999999998876 56666555 5566665 99999999999998764332211
Q ss_pred -hhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 118 -FLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 118 -~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
..+...+|+.||+|++|+||.+||+.+| ..+|.+.+.++++.++ +.+|.|+||.|+|++|+.++..
T Consensus 83 ~~~el~eaF~~fD~d~~G~Is~~el~~~l----~~lg~~~~~~e~~~mi----~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 83 SSEELKEAFRVFDKDGDGFISASELKKVL----TSLGEKLTDEECKEMI----REVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHHccCCCCcCcHHHHHHHH----HHhCCcCCHHHHHHHH----HhcCCCCCCeEeHHHHHHHHhc
Confidence 2356779999999999999999999998 5779999988877777 7999999999999999999864
No 6
>PTZ00183 centrin; Provisional
Probab=99.69 E-value=1.2e-15 Score=115.92 Aligned_cols=143 Identities=21% Similarity=0.261 Sum_probs=109.7
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCC--CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCc
Q 027496 39 EAVVITVASCFRYRPPVQKCRFDVGDLARLAAESRF--SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGEN 116 (222)
Q Consensus 39 ~~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~--t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~ 116 (222)
...+..+..+|...+..+++.++..++..+++..++ +..++..+ |..+|.+ ++|.|+++||..++........
T Consensus 13 ~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l---~~~~d~~--~~g~i~~~eF~~~~~~~~~~~~ 87 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQM---IADVDKD--GSGKIDFEEFLDIMTKKLGERD 87 (158)
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHH---HHHhCCC--CCCcEeHHHHHHHHHHHhcCCC
Confidence 334455666677777788899999999999887664 55555544 5555664 9999999999988764321111
Q ss_pred hhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCch
Q 027496 117 LFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPS 194 (222)
Q Consensus 117 ~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~ 194 (222)
.......+|+.+|.+++|+|+.+||..++. ..|..++.+++..++ ..+|.+++|.|+|++|+.++...|.
T Consensus 88 ~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~----~~~~~l~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 88 PREEILKAFRLFDDDKTGKISLKNLKRVAK----ELGETITDEELQEMI----DEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred cHHHHHHHHHHhCCCCCCcCcHHHHHHHHH----HhCCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHhcccC
Confidence 223445689999999999999999999984 557788888766666 6999999999999999999988774
No 7
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.2e-15 Score=111.36 Aligned_cols=135 Identities=24% Similarity=0.306 Sum_probs=113.0
Q ss_pred HHhhhhcCCCCCCCCCCCHHHHHHHHhhcCC--CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc-CCCCCchhhh
Q 027496 44 TVASCFRYRPPVQKCRFDVGDLARLAAESRF--SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQ-APYGENLFLD 120 (222)
Q Consensus 44 ~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~--t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~-~~~~~~~~~~ 120 (222)
.+...|.-.+....+.+..++|.-.+++.+| .++||.++...+++ ++.|.|++++|...+.. ..... .-.+
T Consensus 34 ~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk-----~~~g~i~fe~f~~~mt~k~~e~d-t~eE 107 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDK-----EGSGKITFEDFRRVMTVKLGERD-TKEE 107 (172)
T ss_pred hHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhh-----ccCceechHHHHHHHHHHHhccC-cHHH
Confidence 3455566666777889999999988999988 57788888776666 58999999999988754 33333 4466
Q ss_pred HHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 121 RVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 121 ~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
...+|+.+|.|++|.|+..+|+.+. ..+|+.++++++.++| ..+|.++||.|+-+||.++|++.
T Consensus 108 i~~afrl~D~D~~Gkis~~~lkrva----keLgenltD~El~eMI----eEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 108 IKKAFRLFDDDKTGKISQRNLKRVA----KELGENLTDEELMEMI----EEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHHHcccccCCCCcCHHHHHHHH----HHhCccccHHHHHHHH----HHhcccccccccHHHHHHHHhcC
Confidence 7789999999999999999999998 5789999999999999 59999999999999999998754
No 8
>PTZ00184 calmodulin; Provisional
Probab=99.62 E-value=2.4e-14 Score=107.40 Aligned_cols=137 Identities=19% Similarity=0.310 Sum_probs=102.1
Q ss_pred HHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCC--CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchh
Q 027496 41 VVITVASCFRYRPPVQKCRFDVGDLARLAAESRF--SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLF 118 (222)
Q Consensus 41 ~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~--t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~ 118 (222)
....+...|...+..++|.++..++..++...+. +..++.. .|..+|.+ ++|.|++++|..++..........
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~---~~~~~d~~--~~g~i~~~ef~~~l~~~~~~~~~~ 83 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQD---MINEVDAD--GNGTIDFPEFLTLMARKMKDTDSE 83 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHH---HHHhcCcC--CCCcCcHHHHHHHHHHhccCCcHH
Confidence 3344555566667777889999999988876654 4444544 45556665 899999999998876432211122
Q ss_pred hhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 119 LDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 119 ~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
.....+|+.||.+++|+|+.+||..++. ..|..++.+.+..++ +.+|.+++|.|+|+||+.++.
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~----~~~~~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMT----NLGEKLTDEEVDEMI----READVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHH----HHCCCCCHHHHHHHH----HhcCCCCCCcCcHHHHHHHHh
Confidence 3345699999999999999999999985 457778887766655 789999999999999998875
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.48 E-value=3.9e-12 Score=99.05 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=80.9
Q ss_pred HHHHHHHhhccCCCCCCChhhhhhccc-ccchhhHHHHHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHH
Q 027496 5 ANRSFLRAFDYDGSSSLTFGERICAAC-IPLIAIIEAVVITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALS 83 (222)
Q Consensus 5 ~~~~~~~~L~~d~~~R~t~~e~l~h~w-~~~~~~~~~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~ei~~l~ 83 (222)
.+-..|...++|.++||+++|+..|.= ....+++...+..+..+|.... .+++..+|+..|.+. |+.|+
T Consensus 58 ~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~---~G~i~f~EF~~Lw~~-------i~~Wr 127 (221)
T KOG0037|consen 58 QLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDN---SGTIGFKEFKALWKY-------INQWR 127 (221)
T ss_pred HHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCC---CCccCHHHHHHHHHH-------HHHHH
Confidence 344456666666666776666555422 1223334444444555554432 345556666555543 45555
Q ss_pred HHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHH
Q 027496 84 ELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEA 163 (222)
Q Consensus 84 ~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~ 163 (222)
..|...|.| ++|+|+..||..+|..+...-++ .-...+++.||..++|.|.+++|.+++-.+ .
T Consensus 128 ~vF~~~D~D--~SG~I~~sEL~~Al~~~Gy~Lsp-q~~~~lv~kyd~~~~g~i~FD~FI~ccv~L--------------~ 190 (221)
T KOG0037|consen 128 NVFRTYDRD--RSGTIDSSELRQALTQLGYRLSP-QFYNLLVRKYDRFGGGRIDFDDFIQCCVVL--------------Q 190 (221)
T ss_pred HHHHhcccC--CCCcccHHHHHHHHHHcCcCCCH-HHHHHHHHHhccccCCceeHHHHHHHHHHH--------------H
Confidence 666666654 66666666666666554433222 111224455665556666666666554211 1
Q ss_pred HHHHHHHHcCCCCCCC--ccHHHHHHHH
Q 027496 164 IIDKTFADADIDKDGR--INKEEWKEFA 189 (222)
Q Consensus 164 ~~~~~f~~~D~~~dG~--Is~~eF~~~~ 189 (222)
.+.+.|+..|.+.+|. |+|++|+.+.
T Consensus 191 ~lt~~Fr~~D~~q~G~i~~~y~dfl~~t 218 (221)
T KOG0037|consen 191 RLTEAFRRRDTAQQGSITISYDDFLQMT 218 (221)
T ss_pred HHHHHHHHhccccceeEEEeHHHHHHHh
Confidence 2344555556555553 4555655543
No 10
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.42 E-value=5.8e-13 Score=86.54 Aligned_cols=64 Identities=31% Similarity=0.580 Sum_probs=57.5
Q ss_pred HHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHH
Q 027496 122 VVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFA 189 (222)
Q Consensus 122 ~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~ 189 (222)
..+|+.||.|++|+|+.+||..++. ..+...+++.+.+.++.+|+.+|.|+||.|+++||+.++
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~----~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALK----HLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH----HTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHH----HhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 3489999999999999999999984 556667788899999999999999999999999999875
No 11
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.41 E-value=3.1e-12 Score=96.44 Aligned_cols=112 Identities=18% Similarity=0.228 Sum_probs=88.9
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHH
Q 027496 68 LAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAA 147 (222)
Q Consensus 68 l~~~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~ 147 (222)
+...+.+|++|+++|++.|..+|++ ++|.|++.+|..++...+..... .+...+|..+|. |.|.|++.+|..+|..
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d--~~G~I~~~el~~ilr~lg~~~s~-~ei~~l~~~~d~-~~~~idf~~Fl~~ms~ 83 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRD--SDGLIDRNELGKILRSLGFNPSE-AEINKLFEEIDA-GNETVDFPEFLTVMSV 83 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcC--CCCCCcHHHHHHHHHHcCCCCcH-HHHHHHHHhccC-CCCccCHHHHHHHHHH
Confidence 4446689999999999999999997 99999999999999765443321 233447888998 9999999999999864
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 148 ILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 148 ~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
. .+..-+.+ -+...|+.+|.|+||+|+..++..++.
T Consensus 84 ~---~~~~~~~E----el~~aF~~fD~d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 84 K---LKRGDKEE----ELREAFKLFDKDHDGYISIGELRRVLK 119 (160)
T ss_pred H---hccCCcHH----HHHHHHHHhCCCCCceecHHHHHHHHH
Confidence 3 22222333 356677999999999999999999996
No 12
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.40 E-value=8.1e-12 Score=97.28 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=111.7
Q ss_pred HHHhhhhcCCCCCCCCCCCHHHHHHHHhh---cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhh
Q 027496 43 ITVASCFRYRPPVQKCRFDVGDLARLAAE---SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFL 119 (222)
Q Consensus 43 ~~l~~~f~~~~~~~~~~l~~~~l~~l~~~---~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~ 119 (222)
..+..+|...+....+.|+.+|+...+.. .+|+.+-+..|...|+. +.+|+|+++||...+.. ..
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~-----~~~G~i~f~EF~~Lw~~-------i~ 124 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDR-----DNSGTIGFKEFKALWKY-------IN 124 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcC-----CCCCccCHHHHHHHHHH-------HH
Confidence 34566788888888889999999987653 36788888877777776 58999999999877643 13
Q ss_pred hHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHHhc
Q 027496 120 DRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLKNM 199 (222)
Q Consensus 120 ~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~~ 199 (222)
....+|+.||.|++|.|+..||+.+| ...|..++++-.+.++ +.+|..+.|.|.|++|+.++..-..+.+.+
T Consensus 125 ~Wr~vF~~~D~D~SG~I~~sEL~~Al----~~~Gy~Lspq~~~~lv----~kyd~~~~g~i~FD~FI~ccv~L~~lt~~F 196 (221)
T KOG0037|consen 125 QWRNVFRTYDRDRSGTIDSSELRQAL----TQLGYRLSPQFYNLLV----RKYDRFGGGRIDFDDFIQCCVVLQRLTEAF 196 (221)
T ss_pred HHHHHHHhcccCCCCcccHHHHHHHH----HHcCcCCCHHHHHHHH----HHhccccCCceeHHHHHHHHHHHHHHHHHH
Confidence 45669999999999999999999998 6789999998766666 699987799999999999998776665554
No 13
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.38 E-value=4.7e-12 Score=91.70 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=102.7
Q ss_pred HhhhhcCCCCCCCCCCCHHHHHHHHhhcCC--CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCC--CCchhhh
Q 027496 45 VASCFRYRPPVQKCRFDVGDLARLAAESRF--SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY--GENLFLD 120 (222)
Q Consensus 45 l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~--t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~--~~~~~~~ 120 (222)
++.+|..++..++++++......+++..+. |..++.+....+..-- -+-..|+|++|..++..... .....++
T Consensus 13 ~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~---~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 13 FKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRRE---MNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccch---hhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 444555555557889999999999999887 5566655544444410 13479999999988865432 2224467
Q ss_pred HHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 121 RVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 121 ~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
.+...+.||++++|.|...||+++| ..+|.++++++++.++ .--.|++|.|.|+.|++.+.
T Consensus 90 fvegLrvFDkeg~G~i~~aeLRhvL----ttlGekl~eeEVe~Ll-----ag~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMGAELRHVL----TTLGEKLTEEEVEELL-----AGQEDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHhhcccCCcceeHHHHHHHH----HHHHhhccHHHHHHHH-----ccccccCCcCcHHHHHHHHh
Confidence 7789999999999999999999998 6789999999999998 45567899999999998875
No 14
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.37 E-value=9.7e-12 Score=94.19 Aligned_cols=111 Identities=23% Similarity=0.238 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhc
Q 027496 74 FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESE 153 (222)
Q Consensus 74 ~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g 153 (222)
++..++..+.+.|..+|.+ ++|+|+..|+..++...+..... .+...+++.+|.|++|.|+++||..++... +
T Consensus 2 ~~~~~~~el~~~F~~fD~d--~~G~i~~~el~~~lr~lg~~~t~-~el~~~~~~~D~dg~g~I~~~eF~~l~~~~----~ 74 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKD--GDGKISVEELGAVLRSLGQNPTE-EELRDLIKEIDLDGDGTIDFEEFLDLMEKL----G 74 (151)
T ss_pred CCHHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCCCCCH-HHHHHHHHHhCCCCCCeEcHHHHHHHHHhh----h
Confidence 4667788899999999997 99999999999999875443222 444568899999999999999999998533 2
Q ss_pred CCCCHH-HHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 154 IKLPDD-LLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 154 ~~~~~~-~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
...+.+ .-.+.+..+|+.+|.|++|.||.+|+..++..
T Consensus 75 ~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~ 113 (151)
T KOG0027|consen 75 EEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTS 113 (151)
T ss_pred cccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHH
Confidence 111111 12234677889999999999999999999975
No 15
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.36 E-value=5.3e-11 Score=87.72 Aligned_cols=135 Identities=18% Similarity=0.241 Sum_probs=96.2
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcC--CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCch
Q 027496 40 AVVITVASCFRYRPPVQKCRFDVGDLARLAAESR--FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENL 117 (222)
Q Consensus 40 ~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~--~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~ 117 (222)
..+..++.+|.-.+.+.++-|..++++......+ .+.+++..+ +.. ..|.|++.-|+..++....+..+
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM---~~E------a~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAM---MKE------APGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHH---HHh------CCCCeeHHHHHHHHHHHhcCCCH
Confidence 3344456666666666666666666666666654 255555544 233 56667776666666543334333
Q ss_pred hhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 118 FLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 118 ~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
....+.||+.||.+++|.|..+.|+++| ...|..+++++++++. +.+-++..|.++|..|+.++..
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~L----tt~gDr~~~eEV~~m~----r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELL----TTMGDRFTDEEVDEMY----REAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHH----HHhcccCCHHHHHHHH----HhCCcccCCceeHHHHHHHHHc
Confidence 2333559999999999999999999998 5679999999977776 6888889999999999999974
No 16
>PTZ00184 calmodulin; Provisional
Probab=99.25 E-value=1e-10 Score=87.58 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHh
Q 027496 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMES 152 (222)
Q Consensus 73 ~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~ 152 (222)
.++.++++.+...|..+|.+ ++|.|+.+||..++........ ......+|+.+|.+++|.|+.+||..++... .
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~---~ 77 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKD--GDGTITTKELGTVMRSLGQNPT-EAELQDMINEVDADGNGTIDFPEFLTLMARK---M 77 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCC--CCCcCCHHHHHHHHHHhCCCCC-HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh---c
Confidence 57888999999999999997 9999999999998865432221 1334558899999999999999999987432 1
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 153 EIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 153 g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
.... ....+..+|+.+|.+++|.|+.++|..++..
T Consensus 78 ~~~~----~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 78 KDTD----SEEEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred cCCc----HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 1111 2235677789999999999999999988853
No 17
>PTZ00183 centrin; Provisional
Probab=99.24 E-value=2.6e-10 Score=86.37 Aligned_cols=109 Identities=21% Similarity=0.226 Sum_probs=85.5
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHh
Q 027496 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMES 152 (222)
Q Consensus 73 ~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~ 152 (222)
++++.+++.+...|..+|++ ++|.|+.+||..++........ ......+|+.+|.+++|.|+++||..++... .
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~g~~~~-~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~---~ 83 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTD--GSGTIDPKELKVAMRSLGFEPK-KEEIKQMIADVDKDGSGKIDFEEFLDIMTKK---L 83 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCCCCC-HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH---h
Confidence 57889999999999999997 9999999999999875432211 1234558899999999999999999987432 1
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 153 EIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 153 g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
...... ..+..+|+.+|.+++|.|+.+||..++..
T Consensus 84 ~~~~~~----~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 84 GERDPR----EEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred cCCCcH----HHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 222233 34567789999999999999999999864
No 18
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.23 E-value=2.5e-11 Score=83.33 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=54.3
Q ss_pred HHHhhhhhcc-CCCCCccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 121 RVVAFRLYDL-RQTGYIEREEVKQMVAAILMESEIKLPD-DLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 121 ~~~~F~~~D~-d~~G~Is~~El~~~l~~~~~~~g~~~~~-~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
.+.+|+.||. +++|+|+.+||+.+++. .+|..++. ++++.++ +.+|.|+||.|+|+||+.++..-
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~---elg~~ls~~~~v~~mi----~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQ---QLPHLLKDVEGLEEKM----KNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHH---HhhhhccCHHHHHHHH----HHhCCCCCCCCcHHHHHHHHHHH
Confidence 3569999999 99999999999999853 25666777 6665555 79999999999999999998653
No 19
>PLN02964 phosphatidylserine decarboxylase
Probab=99.16 E-value=5.2e-10 Score=101.44 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=93.6
Q ss_pred CCCCCHHHHHHHHhh--cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc-CCCCCchhhhHHHhhhhhccCCC
Q 027496 57 KCRFDVGDLARLAAE--SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQ-APYGENLFLDRVVAFRLYDLRQT 133 (222)
Q Consensus 57 ~~~l~~~~l~~l~~~--~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~-~~~~~~~~~~~~~~F~~~D~d~~ 133 (222)
..+++++++..+... +.++..|++.+++.|+.+|+| ++|.| ...+...+.. .+... .......+|+.+|.|++
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~d--gdG~i-Lg~ilrslG~~~pte~-e~~fi~~mf~~~D~Dgd 193 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPS--SSNKV-VGSIFVSCSIEDPVET-ERSFARRILAIVDYDED 193 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCC--CCCcC-HHHHHHHhCCCCCCHH-HHHHHHHHHHHhCCCCC
Confidence 347888999888887 789999999999999999997 99997 3333333331 11111 00113458899999999
Q ss_pred CCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 134 GYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 134 G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
|.|+.+||..++. ..+...++++ +..+|+.+|.|++|.|+++||..++...
T Consensus 194 G~IdfdEFl~lL~----~lg~~~seEE----L~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 194 GQLSFSEFSDLIK----AFGNLVAANK----KEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CeEcHHHHHHHHH----HhccCCCHHH----HHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 9999999999985 3455556655 4556689999999999999999999774
No 20
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.10 E-value=8.9e-10 Score=93.12 Aligned_cols=149 Identities=21% Similarity=0.339 Sum_probs=112.1
Q ss_pred HHhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHH
Q 027496 44 TVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVV 123 (222)
Q Consensus 44 ~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~ 123 (222)
++...|...+..+++.++...+.+....+...+-.-+.....|...|.| .+|.++++||...+... + .+.-.
T Consensus 15 r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~--~dg~vDy~eF~~Y~~~~---E---~~l~~ 86 (463)
T KOG0036|consen 15 RIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDAN--RDGRVDYSEFKRYLDNK---E---LELYR 86 (463)
T ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccC--cCCcccHHHHHHHHHHh---H---HHHHH
Confidence 3444455556666777777777766665554433445556778888886 99999999999887541 1 22334
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHHhcCccc
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLKNMTLPY 203 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~~~~~~ 203 (222)
.|+..|.++||.|..+|+.+.| ...|.++++++.+.++ +.+|.++++.|+++||...+..+|+ ..
T Consensus 87 ~F~~iD~~hdG~i~~~Ei~~~l----~~~gi~l~de~~~k~~----e~~d~~g~~~I~~~e~rd~~ll~p~-------s~ 151 (463)
T KOG0036|consen 87 IFQSIDLEHDGKIDPNEIWRYL----KDLGIQLSDEKAAKFF----EHMDKDGKATIDLEEWRDHLLLYPE-------SD 151 (463)
T ss_pred HHhhhccccCCccCHHHHHHHH----HHhCCccCHHHHHHHH----HHhccCCCeeeccHHHHhhhhcCCh-------hH
Confidence 8899999999999999999998 5679999999877766 6999999999999999999988883 44
Q ss_pred hhhhhhhcCccc
Q 027496 204 LTDITTIFPSFV 215 (222)
Q Consensus 204 ~~~~~~~~~~~~ 215 (222)
+.++-..|+...
T Consensus 152 i~di~~~W~h~~ 163 (463)
T KOG0036|consen 152 LEDIYDFWRHVL 163 (463)
T ss_pred HHHHHHhhhhhe
Confidence 555555565544
No 21
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.07 E-value=5.5e-10 Score=76.69 Aligned_cols=68 Identities=18% Similarity=0.304 Sum_probs=54.6
Q ss_pred hHHHhhhhhc-cCCCC-CccHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 120 DRVVAFRLYD-LRQTG-YIEREEVKQMVAAILM-ESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 120 ~~~~~F~~~D-~d~~G-~Is~~El~~~l~~~~~-~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
..+.+|+.|| .|++| +|+.+||+.+|+.-++ ..|...+++++++++ +.+|.|++|.|+|+||+.++..
T Consensus 9 ~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i----~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 9 ALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVM----ETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 3456999998 89999 5999999999964111 156667877777777 6999999999999999988854
No 22
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.04 E-value=1e-09 Score=76.29 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=51.8
Q ss_pred HHHhhhhhc-cCCCC-CccHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 121 RVVAFRLYD-LRQTG-YIEREEVKQMVAAILME-SEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 121 ~~~~F~~~D-~d~~G-~Is~~El~~~l~~~~~~-~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
.+.+|+.|| .|++| +|+.+||+.+++..+.. .+...+++++++++ +.+|.|+||.|+|+||+.++..-
T Consensus 12 ~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~----~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 12 LIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIM----NDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHH----HHhCCCCCCCCCHHHHHHHHHHH
Confidence 355899998 78998 59999999998643211 12334555665555 79999999999999999998654
No 23
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=5e-09 Score=77.91 Aligned_cols=109 Identities=20% Similarity=0.261 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHh
Q 027496 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMES 152 (222)
Q Consensus 73 ~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~ 152 (222)
.++.++-+.+...|..++++ ++|+|+.+||..++...+..... .+...+..-+|++++|+|++++|..++.. ..
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~--~~g~iD~~EL~vAmralGFE~~k-~ei~kll~d~dk~~~g~i~fe~f~~~mt~---k~ 99 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPD--MAGKIDVEELKVAMRALGFEPKK-EEILKLLADVDKEGSGKITFEDFRRVMTV---KL 99 (172)
T ss_pred cccHHHHhhHHHHHHhhccC--CCCcccHHHHHHHHHHcCCCcch-HHHHHHHHhhhhccCceechHHHHHHHHH---HH
Confidence 46777778888889998886 99999999998888765544322 23344667789999999999999999853 34
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 153 EIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 153 g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
|..-+.++ +..+|+.+|.|++|+||+.+|+.++..
T Consensus 100 ~e~dt~eE----i~~afrl~D~D~~Gkis~~~lkrvake 134 (172)
T KOG0028|consen 100 GERDTKEE----IKKAFRLFDDDKTGKISQRNLKRVAKE 134 (172)
T ss_pred hccCcHHH----HHHHHHcccccCCCCcCHHHHHHHHHH
Confidence 44446665 455568999999999999999999875
No 24
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=4.6e-09 Score=86.42 Aligned_cols=168 Identities=18% Similarity=0.235 Sum_probs=111.6
Q ss_pred HHhhccCCCCCCChhhhhhcccc--------cc---hhhHHHHHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHH
Q 027496 10 LRAFDYDGSSSLTFGERICAACI--------PL---IAIIEAVVITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNE 78 (222)
Q Consensus 10 ~~~L~~d~~~R~t~~e~l~h~w~--------~~---~~~~~~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~e 78 (222)
+...+++..+++|+.+.+..-|- +. .......+.+=+..|...+.++++.++.+|+..++.--....-.
T Consensus 119 ~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~ 198 (325)
T KOG4223|consen 119 WDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMK 198 (325)
T ss_pred HHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHH
Confidence 45567788888888887765553 11 11123334444556888888899999999997765433332222
Q ss_pred HHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCC-CCch---hhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcC
Q 027496 79 LEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY-GENL---FLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEI 154 (222)
Q Consensus 79 i~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~-~~~~---~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~ 154 (222)
---+......+|+| +||+|+++||.--|..... +..+ ..++...+..+|+|++|+++.+|++.-+ ...+.
T Consensus 199 ~iVi~Etl~d~Dkn--~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI----~P~~~ 272 (325)
T KOG4223|consen 199 DIVIAETLEDIDKN--GDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWI----LPSEQ 272 (325)
T ss_pred HHHHHHHHhhcccC--CCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhccc----CCCCc
Confidence 33455667788886 9999999999877754322 2111 1233346677899999999999999765 22233
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHH
Q 027496 155 KLPDDLLEAIIDKTFADADIDKDGRINKEEWKE 187 (222)
Q Consensus 155 ~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~ 187 (222)
.....+...++ -.+|.|+||++|++|.+.
T Consensus 273 d~A~~EA~hL~----~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 273 DHAKAEARHLL----HEADEDKDGKLSKEEILE 301 (325)
T ss_pred cHHHHHHHHHh----hhhccCccccccHHHHhh
Confidence 33444444555 699999999999998653
No 25
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.00 E-value=1.8e-09 Score=74.14 Aligned_cols=66 Identities=23% Similarity=0.358 Sum_probs=55.0
Q ss_pred HHHhhhhhcc-CC-CCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 121 RVVAFRLYDL-RQ-TGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 121 ~~~~F~~~D~-d~-~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
.+.+|..||. |+ +|+|+.+||+.+++.. ...|.+++++++++++ +.+|.|++|+|+|+||+.++..
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~-~~lg~k~t~~ev~~m~----~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKE-LTIGSKLQDAEIAKLM----EDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHH-HhcCCCCCHHHHHHHH----HHhcCCCCCCCcHHHHHHHHHH
Confidence 4569999998 77 8999999999998531 1258888998877776 6899999999999999988864
No 26
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.99 E-value=2e-09 Score=74.97 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=56.2
Q ss_pred hHHHhhhhhcc-CC-CCCccHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHH
Q 027496 120 DRVVAFRLYDL-RQ-TGYIEREEVKQMVAAILME-SEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLL 196 (222)
Q Consensus 120 ~~~~~F~~~D~-d~-~G~Is~~El~~~l~~~~~~-~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~ 196 (222)
....+|+.||. |+ +|+|+.+||+.++++.+.. .|...++++++.++ +.+|.+++|.|+|++|+.++....-++
T Consensus 9 ~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~----~~~D~~~dg~I~f~eF~~l~~~~~~~~ 84 (94)
T cd05031 9 SLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIM----KDLDQNRDGKVNFEEFVSLVAGLSIAC 84 (94)
T ss_pred HHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 34559999997 97 7999999999998652222 45566777666665 799999999999999999987544333
No 27
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.93 E-value=7.2e-09 Score=71.79 Aligned_cols=73 Identities=15% Similarity=0.288 Sum_probs=55.0
Q ss_pred HHHhhhhhc-cCCCCC-ccHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 121 RVVAFRLYD-LRQTGY-IEREEVKQMVAAILME-SEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 121 ~~~~F~~~D-~d~~G~-Is~~El~~~l~~~~~~-~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
.+.+|+.|| .+++|+ |+.+||+.+|+..+.. .+...++++++.++ +.+|.|++|.|+|++|+.++..--..++
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~----~~~D~d~~G~I~f~eF~~l~~~~~~~~~ 86 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIM----KELDENGDGEVDFQEFVVLVAALTVACN 86 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHH----HHHCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 456999997 999995 9999999999642111 23344666665555 7999999999999999999876544444
No 28
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.7e-08 Score=83.14 Aligned_cols=141 Identities=18% Similarity=0.183 Sum_probs=98.4
Q ss_pred HHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHH-HHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCC-------
Q 027496 42 VITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNE-LEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY------- 113 (222)
Q Consensus 42 ~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~e-i~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~------- 113 (222)
..++...+...+.++++.++..++...+.+. ++.. +....+.+..+|.+ .+|.|+++|....+.....
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s--~k~~v~~~~~~~~~~~d~~--~Dg~i~~eey~~~~~~~~~~~~~~~d 151 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQS--QKKYVVEEAARRWDEYDKN--KDGFITWEEYLPQTYGRVDLPDEFPD 151 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHH--HHHHHHHHHHHHHHHhccC--ccceeeHHHhhhhhhhcccCcccccc
Confidence 3445555666667788899999998877643 2222 35566788888987 9999999999988764210
Q ss_pred -CCc-hhhhH----HHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHH
Q 027496 114 -GEN-LFLDR----VVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKE 187 (222)
Q Consensus 114 -~~~-~~~~~----~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~ 187 (222)
..+ .+..+ ..-|+..|.|++|.++.+||..+|. ..-.+.+.+- ++...+...|+|+||+|+++||+.
T Consensus 152 ~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH---PEe~p~M~~i----Vi~Etl~d~Dkn~DG~I~~eEfig 224 (325)
T KOG4223|consen 152 EEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLH---PEEHPHMKDI----VIAETLEDIDKNGDGKISLEEFIG 224 (325)
T ss_pred chhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccC---hhhcchHHHH----HHHHHHhhcccCCCCceeHHHHHh
Confidence 001 11111 2388999999999999999999973 2222223332 344444789999999999999999
Q ss_pred HHHhCc
Q 027496 188 FAVRNP 193 (222)
Q Consensus 188 ~~~~~~ 193 (222)
-|..++
T Consensus 225 d~~~~~ 230 (325)
T KOG4223|consen 225 DLYSHE 230 (325)
T ss_pred HHhhcc
Confidence 887654
No 29
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.90 E-value=5.4e-09 Score=81.48 Aligned_cols=122 Identities=24% Similarity=0.300 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcC-CCCCchhhhHHHhhhhhccCCCCC
Q 027496 57 KCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQA-PYGENLFLDRVVAFRLYDLRQTGY 135 (222)
Q Consensus 57 ~~~l~~~~l~~l~~~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~-~~~~~~~~~~~~~F~~~D~d~~G~ 135 (222)
++++++..+..+.+.+.+++.|+..+++.|..-++ +|.++.++|+.++... |.++.. .-...+|+.||.|++|.
T Consensus 6 ~~~~~~~~~e~l~~~t~f~~~ei~~~Yr~Fk~~cP----~G~~~~~~F~~i~~~~fp~gd~~-~y~~~vF~~fD~~~dg~ 80 (193)
T KOG0044|consen 6 NSKLQPESLEQLVQQTKFSKKEIQQWYRGFKNECP----SGRLTLEEFREIYASFFPDGDAS-KYAELVFRTFDKNKDGT 80 (193)
T ss_pred cccCCcHHHHHHHHhcCCCHHHHHHHHHHhcccCC----CCccCHHHHHHHHHHHCCCCCHH-HHHHHHHHHhcccCCCC
Confidence 45788899999999999999999999999999664 7999999999999874 433321 11234889999999999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 136 IEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 136 Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
|++.||..++..+.+ ..+++.++-.|+.+|.|++|.|+++|++.++..
T Consensus 81 i~F~Efi~als~~~r--------Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~ 128 (193)
T KOG0044|consen 81 IDFLEFICALSLTSR--------GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQA 128 (193)
T ss_pred cCHHHHHHHHHHHcC--------CcHHHHhhhhheeecCCCCceEcHHHHHHHHHH
Confidence 999999888854321 123345666789999999999999999999864
No 30
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.89 E-value=3.4e-08 Score=76.88 Aligned_cols=133 Identities=20% Similarity=0.207 Sum_probs=93.5
Q ss_pred HHHHHHHhhccC-CCCCCChhhhhhcccccchhhHHHHHHHHhhhhcCCCCCCCCC-CCHHHHHHHHhhcCCCHHHHHHH
Q 027496 5 ANRSFLRAFDYD-GSSSLTFGERICAACIPLIAIIEAVVITVASCFRYRPPVQKCR-FDVGDLARLAAESRFSVNELEAL 82 (222)
Q Consensus 5 ~~~~~~~~L~~d-~~~R~t~~e~l~h~w~~~~~~~~~~~~~l~~~f~~~~~~~~~~-l~~~~l~~l~~~~~~t~~ei~~l 82 (222)
++-..|+.|+.. ..+.+|..|.+.-|-+...++...++.. |.... ++. ++.+++..++....-...+-+++
T Consensus 34 ~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~----f~~~~---~~~~v~F~~Fv~~ls~f~~~~~~~~Kl 106 (187)
T KOG0034|consen 34 RLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDR----FDTDG---NGDPVDFEEFVRLLSVFSPKASKREKL 106 (187)
T ss_pred HHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHH----HhccC---CCCccCHHHHHHHHhhhcCCccHHHHH
Confidence 344567888888 8999999999887644444454444443 43332 222 89999988887654433333577
Q ss_pred HHHHHhhccCCCCCCcccHHHHHHHHhcCCCC-Cc---hhhh--HHHhhhhhccCCCCCccHHHHHHHHH
Q 027496 83 SELYKNLSCSIIKDGLIHKEELQVALFQAPYG-EN---LFLD--RVVAFRLYDLRQTGYIEREEVKQMVA 146 (222)
Q Consensus 83 ~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~-~~---~~~~--~~~~F~~~D~d~~G~Is~~El~~~l~ 146 (222)
.=.|+.+|.+ ++|.|+++|+..++..+... .. ...+ .-..|..+|.|+||+|+++|+..++.
T Consensus 107 ~faF~vYD~~--~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 107 RFAFRVYDLD--GDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHhcCC--CCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 7788888886 99999999999998764321 11 1111 12489999999999999999999984
No 31
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.86 E-value=1e-08 Score=71.64 Aligned_cols=82 Identities=27% Similarity=0.294 Sum_probs=62.2
Q ss_pred HHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHHhcC
Q 027496 121 RVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLKNMT 200 (222)
Q Consensus 121 ~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~~~ 200 (222)
...+|+.+|.|++|.|+.+|++.+++. .| +++++++.++ +.+|.+++|.|+|+||+.++..-...
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~----~~--~~~~ev~~i~----~~~d~~~~g~I~~~eF~~~~~~~~~~----- 76 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLK----SG--LPQTLLAKIW----NLADIDNDGELDKDEFALAMHLIYRK----- 76 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHH----cC--CCHHHHHHHH----HHhcCCCCCCcCHHHHHHHHHHHHHH-----
Confidence 345899999999999999999999853 33 6777665555 79999999999999999988543221
Q ss_pred ccchhhhhhhcCcccccc
Q 027496 201 LPYLTDITTIFPSFVFNT 218 (222)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ 218 (222)
.+...++.-+|..++++
T Consensus 77 -~~g~~~~~~~~~~~~~~ 93 (96)
T smart00027 77 -LNGYPIPASLPPSLIPP 93 (96)
T ss_pred -HcCCCCCccCCHhhcCC
Confidence 23456666777777654
No 32
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.86 E-value=1.1e-08 Score=66.10 Aligned_cols=59 Identities=34% Similarity=0.510 Sum_probs=48.9
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
+|+.+|.|++|.|+.+|+..++. ..| ++.++++.+ |+.+|.+++|.|+|+||+.++..-
T Consensus 4 ~F~~~D~~~~G~i~~~el~~~l~----~~g--~~~~~~~~i----~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 4 IFRSLDPDGDGLISGDEARPFLG----KSG--LPRSVLAQI----WDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHH----HcC--CCHHHHHHH----HHHhcCCCCCcCCHHHHHHHHHHH
Confidence 78999999999999999999984 334 466665555 479999999999999999988653
No 33
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.85 E-value=1e-08 Score=63.65 Aligned_cols=52 Identities=29% Similarity=0.493 Sum_probs=44.6
Q ss_pred CCCCccHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 132 QTGYIEREEVKQMVAAILMESEIK-LPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 132 ~~G~Is~~El~~~l~~~~~~~g~~-~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
.+|.|+.++|+.+| ...|.. ++++++..++ ..+|.|++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l----~~~g~~~~s~~e~~~l~----~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRAL----SKLGIKDLSEEEVDRLF----REFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHH----HHTTSSSSCHHHHHHHH----HHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHH----HHhCCCCCCHHHHHHHH----HhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999998 345878 9998866666 7999999999999999998853
No 34
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.84 E-value=1.6e-08 Score=69.49 Aligned_cols=67 Identities=12% Similarity=0.256 Sum_probs=51.4
Q ss_pred HHHhhhh-hccCCCC-CccHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 121 RVVAFRL-YDLRQTG-YIEREEVKQMVAAILME-SEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 121 ~~~~F~~-~D~d~~G-~Is~~El~~~l~~~~~~-~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
.+.+|+. +|.+|+| +|+.+||+.++..-+.. .+...++.++++++ +.+|.|+||.|+|+||+.++..
T Consensus 11 l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll----~~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 11 LIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM----KKLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHH
Confidence 3558999 6788986 99999999999654322 12345566666655 7999999999999999998864
No 35
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.80 E-value=1.5e-08 Score=65.49 Aligned_cols=63 Identities=29% Similarity=0.300 Sum_probs=48.6
Q ss_pred HHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCC--Cchhh-hHHHhhhhhccCCCCCccHHHHHHHH
Q 027496 81 ALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG--ENLFL-DRVVAFRLYDLRQTGYIEREEVKQMV 145 (222)
Q Consensus 81 ~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~--~~~~~-~~~~~F~~~D~d~~G~Is~~El~~~l 145 (222)
+|.+.|..+|.+ ++|.|+.+||..++...... ..... ....+|+.+|.|++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d--~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKD--GDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTT--SSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCC--ccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 467789999997 99999999999999765322 11111 22347999999999999999999864
No 36
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.78 E-value=3.1e-08 Score=67.94 Aligned_cols=68 Identities=18% Similarity=0.339 Sum_probs=51.7
Q ss_pred HHHhhhhhcc--CCCCCccHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 121 RVVAFRLYDL--RQTGYIEREEVKQMVAAILME-SEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 121 ~~~~F~~~D~--d~~G~Is~~El~~~l~~~~~~-~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
...+|+.||. |++|+|+.+||..+++..+.. .+...+.++++.++ +.+|.+++|.|+|++|+.++...
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~----~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIM----KDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHH----HHhccCCCCcCcHHHHHHHHHHH
Confidence 3558999999 899999999999998642111 11223466655555 79999999999999999998654
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.78 E-value=2.3e-08 Score=72.05 Aligned_cols=61 Identities=25% Similarity=0.361 Sum_probs=49.4
Q ss_pred hHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 120 DRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 120 ~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
...|+|..+|.|+||+|+.+|+..+. .+ .. +..+..+|+.+|.|+||.||++||...+.+.
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~------l~--~~----e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~~ 109 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIR------LD--PN----EHCIKPFFESCDLDKDGSISLDEWCYCFIKE 109 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHH------cc--ch----HHHHHHHHHHHCCCCCCCCCHHHHHHHHhCh
Confidence 45789999999999999999999864 11 11 2345667789999999999999999998443
No 38
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.78 E-value=1.3e-07 Score=80.82 Aligned_cols=176 Identities=15% Similarity=0.190 Sum_probs=108.3
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccc----------------cchhhHHHHHHHHhhhhcCCCCCCCCCCCHHHH
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACI----------------PLIAIIEAVVITVASCFRYRPPVQKCRFDVGDL 65 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~----------------~~~~~~~~~~~~l~~~f~~~~~~~~~~l~~~~l 65 (222)
+.++.+.-|+|+|.|..+-++.+|...-.-+ +.......+-..+..+|-+.++ +++++.+++
T Consensus 231 p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg--~~kLs~deF 308 (489)
T KOG2643|consen 231 PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRG--NGKLSIDEF 308 (489)
T ss_pred CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCC--CccccHHHH
Confidence 3456677799999999999999986432111 1111223444456666666654 559999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCC--CchhhhHHHhhhhhccCCCCCccHHHHHH
Q 027496 66 ARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG--ENLFLDRVVAFRLYDLRQTGYIEREEVKQ 143 (222)
Q Consensus 66 ~~l~~~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~--~~~~~~~~~~F~~~D~d~~G~Is~~El~~ 143 (222)
.++++.+ +.+-+.-.|..+|+. .+|.|+..+|...+...... .+........=+.++.++.| ||.+|+..
T Consensus 309 ~~F~e~L-----q~Eil~lEF~~~~~~--~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~g-ISl~Ef~~ 380 (489)
T KOG2643|consen 309 LKFQENL-----QEEILELEFERFDKG--DSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKG-ISLQEFKA 380 (489)
T ss_pred HHHHHHH-----HHHHHHHHHHHhCcc--cccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCC-cCHHHHHH
Confidence 9988754 233344578888885 66999999998887543211 11101111122334433222 55555554
Q ss_pred HHHHH------------H-----------------HHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 144 MVAAI------------L-----------------MESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 144 ~l~~~------------~-----------------~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
+.+=+ + ...|.++++. +++-+|..+|.|+||.+|++||+.+|++
T Consensus 381 Ff~Fl~~l~dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdh----VvdvvF~IFD~N~Dg~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 381 FFRFLNNLNDFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDH----VVDVVFTIFDENNDGTLSHKEFLAVMKR 453 (489)
T ss_pred HHHHHhhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccc----eeeeEEEEEccCCCCcccHHHHHHHHHH
Confidence 43311 1 1244555544 4666788999999999999999999964
No 39
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.77 E-value=6.8e-08 Score=82.52 Aligned_cols=104 Identities=18% Similarity=0.286 Sum_probs=80.3
Q ss_pred HHHHHHhhccCCCCCCcccHHHHHHHHhcC-----CC---------C-Cchh----------------hh----------
Q 027496 82 LSELYKNLSCSIIKDGLIHKEELQVALFQA-----PY---------G-ENLF----------------LD---------- 120 (222)
Q Consensus 82 l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~-----~~---------~-~~~~----------------~~---------- 120 (222)
|.+.|...|++ .+|+|+...+..++... |. . .+.. .+
T Consensus 466 L~~eF~~~D~~--ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 466 LEDEFRKYDPK--KSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred HHHHHHhcChh--hcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 55679999987 89999999998877431 10 0 0000 00
Q ss_pred -----HHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 121 -----RVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 121 -----~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
...+|+..|.|++|.||.+||+.+.+-+-......++++++.++. +.+|.|+||.|++.||+++.+-
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la----~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELA----RSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHH----HhhccCCCCcccHHHHHHHHhh
Confidence 012999999999999999999999876655666778898888887 6999999999999999998753
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=98.76 E-value=1.6e-07 Score=85.52 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=78.8
Q ss_pred hhHHHHHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCC---CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCC
Q 027496 36 AIIEAVVITVASCFRYRPPVQKCRFDVGDLARLAAESRF---SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAP 112 (222)
Q Consensus 36 ~~~~~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~---t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~ 112 (222)
.+...-...+..+|...++++++.+ +..+++.+++ +..+...+.+.|..+|.+ ++|.|+++||..++....
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D--gdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYD--EDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC--CCCeEcHHHHHHHHHHhc
Confidence 3334444666777888888777775 6667777762 555555577788888886 999999999999987643
Q ss_pred CCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHH
Q 027496 113 YGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAA 147 (222)
Q Consensus 113 ~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~ 147 (222)
.. ....+...+|+.||.|++|+|+.+||..++..
T Consensus 210 ~~-~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 210 NL-VAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred cC-CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 22 22245677999999999999999999999865
No 41
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.68 E-value=9.1e-08 Score=59.96 Aligned_cols=59 Identities=31% Similarity=0.498 Sum_probs=49.2
Q ss_pred HhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHH
Q 027496 123 VAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFA 189 (222)
Q Consensus 123 ~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~ 189 (222)
.+|+.+|.+++|.|+.+|+..+++ ..+...+.+.+.. +|+.+|.+++|.|++++|..++
T Consensus 4 ~~f~~~d~~~~g~l~~~e~~~~l~----~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 4 EAFRLFDKDGDGTISADELKAALK----SLGEGLSEEEIDE----MIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHH----HhCCCCCHHHHHH----HHHHhCCCCCCeEeHHHHHHHh
Confidence 478999999999999999999984 4566677665544 5579999999999999998765
No 42
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.65 E-value=3e-07 Score=64.16 Aligned_cols=81 Identities=14% Similarity=0.270 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHH-H
Q 027496 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILM-E 151 (222)
Q Consensus 73 ~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~-~ 151 (222)
.+|.+++..+.+.|..+|.+ ++|.|+.+++..++....... .+...+|+.+|.+++|.|+++||..++..+-. .
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d--~~G~Is~~el~~~l~~~~~~~---~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKN--QDGTVTGAQAKPILLKSGLPQ---TLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCC--CCCeEeHHHHHHHHHHcCCCH---HHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 46888999999999999987 999999999999997643322 33445889999999999999999998876532 3
Q ss_pred hcCCCCH
Q 027496 152 SEIKLPD 158 (222)
Q Consensus 152 ~g~~~~~ 158 (222)
.|.+++.
T Consensus 78 ~g~~~~~ 84 (96)
T smart00027 78 NGYPIPA 84 (96)
T ss_pred cCCCCCc
Confidence 4555554
No 43
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.59 E-value=2.3e-07 Score=63.70 Aligned_cols=65 Identities=25% Similarity=0.450 Sum_probs=49.6
Q ss_pred hHHHhhhhhccC--CCCCccHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 120 DRVVAFRLYDLR--QTGYIEREEVKQMVAAILMESEIKLP----DDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 120 ~~~~~F~~~D~d--~~G~Is~~El~~~l~~~~~~~g~~~~----~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
..+..|+.|+.. ++|+|+.+||+.++.. ..|..++ +++++. +|+.+|.|++|.|+|+||+.++..
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~---~~g~~~t~~~~~~~v~~----i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEK---ELPNFLKKEKNQKAIDK----IFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHH---HhhHhhccCCCHHHHHH----HHHHcCCCCCCcCcHHHHHHHHHH
Confidence 345689999865 4799999999999853 2333344 555444 457999999999999999999864
No 44
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.56 E-value=7.2e-07 Score=66.09 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCC-chhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHH
Q 027496 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGE-NLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILME 151 (222)
Q Consensus 73 ~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~-~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~ 151 (222)
.|++.+|+.+.+.|..+|.| +||.|+.++++..+...+... +...+... ....|.|.+--|..++
T Consensus 25 mf~q~QIqEfKEAF~~mDqn--rDG~IdkeDL~d~~aSlGk~~~d~elDaM~------~Ea~gPINft~FLTmf------ 90 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQN--RDGFIDKEDLRDMLASLGKIASDEELDAMM------KEAPGPINFTVFLTMF------ 90 (171)
T ss_pred HhhHHHHHHHHHHHHHHhcc--CCCcccHHHHHHHHHHcCCCCCHHHHHHHH------HhCCCCeeHHHHHHHH------
Confidence 36899999999999999997 999999999999997654331 11122111 4789999998888876
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 152 SEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 152 ~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
|..++.-..++.+...|+.+|.+++|+|.-+.+.+++..
T Consensus 91 -GekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 91 -GEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred -HHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHH
Confidence 333433334567888899999999999999999998864
No 45
>PF14658 EF-hand_9: EF-hand domain
Probab=98.52 E-value=4.8e-07 Score=57.88 Aligned_cols=60 Identities=18% Similarity=0.326 Sum_probs=51.5
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCCCC-CCccHHHHHHHHHh
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEI-KLPDDLLEAIIDKTFADADIDKD-GRINKEEWKEFAVR 191 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~-~~~~~~~~~~~~~~f~~~D~~~d-G~Is~~eF~~~~~~ 191 (222)
+|.+||.++.|.|...++...|+++ +. ..++.+++.+. +.+|+++. |.|+++.|+.+|+.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~----~~~~p~e~~Lq~l~----~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAV----TGRSPEESELQDLI----NELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHH----cCCCCcHHHHHHHH----HHhCCCCCCceEeHHHHHHHHHH
Confidence 6999999999999999999999654 44 56677777777 79999987 99999999999864
No 46
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.50 E-value=8.4e-07 Score=60.90 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc-CCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 78 ELEALSELYKNLSCSIIKDGLIHKEELQVALFQ-APYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 78 ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~-~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
-+..|...|..+|.. +++|+|+..||+.++.. .+.......+...+++.+|.|++|.|+++||..++.++
T Consensus 6 ai~~l~~~F~~fd~~-~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVK-GGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCC-CCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 467888899999982 39999999999999977 54221110334457899999999999999999998765
No 47
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.35 E-value=4.8e-07 Score=72.73 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=32.3
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccccch
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~ 35 (222)
+++||++.+.|||..||.+|||+.|||+||||...
T Consensus 239 is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~r 273 (355)
T KOG0033|consen 239 VTPEAKSLIRRMLTVNPKKRITADEALKHPWICNR 273 (355)
T ss_pred CCHHHHHHHHHHhccChhhhccHHHHhCCchhcch
Confidence 47899999999999999999999999999999543
No 48
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.33 E-value=8.5e-06 Score=69.46 Aligned_cols=102 Identities=19% Similarity=0.311 Sum_probs=78.2
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhc
Q 027496 74 FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESE 153 (222)
Q Consensus 74 ~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g 153 (222)
.+++--.++...|+.+|.+ ++|.++..++..++...+.......-...+|+..|.|.+|.++.+||++-+.
T Consensus 8 ~~~er~~r~~~lf~~lD~~--~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------- 78 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSK--NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------- 78 (463)
T ss_pred CcHHHHHHHHHHHHHhccC--CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH-------
Confidence 3445456778888898886 9999999999998877654422222334588999999999999999999873
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 154 IKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 154 ~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
+. +.-+-.+|+..|.++||.|+.+|..+.++
T Consensus 79 ----~~--E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~ 109 (463)
T KOG0036|consen 79 ----NK--ELELYRIFQSIDLEHDGKIDPNEIWRYLK 109 (463)
T ss_pred ----Hh--HHHHHHHHhhhccccCCccCHHHHHHHHH
Confidence 11 12355778999999999999998777665
No 49
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.33 E-value=5.8e-07 Score=48.29 Aligned_cols=27 Identities=37% Similarity=0.673 Sum_probs=23.8
Q ss_pred HHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 165 IDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 165 ~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
++.+|+.+|.|+||+|+++||+.++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456779999999999999999999864
No 50
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.33 E-value=4.4e-06 Score=57.89 Aligned_cols=69 Identities=19% Similarity=0.168 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhccCCCCCC-cccHHHHHHHHhc-CC---CCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 79 LEALSELYKNLSCSIIKDG-LIHKEELQVALFQ-AP---YGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 79 i~~l~~~F~~~d~~~~~~G-~I~~~ef~~~l~~-~~---~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
+..+.+.|..+|.. |++| +|+.+||..++.. .+ .......+...+++.+|.|++|.|+++||..++..+
T Consensus 9 ~~~~~~~F~~~dd~-dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGK-EGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHcc-CCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 56777778888843 4888 5999999999955 21 111111234458899999999999999999998665
No 51
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.31 E-value=5.7e-07 Score=48.33 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=21.5
Q ss_pred HHhhhhhccCCCCCccHHHHHHHHH
Q 027496 122 VVAFRLYDLRQTGYIEREEVKQMVA 146 (222)
Q Consensus 122 ~~~F~~~D~d~~G~Is~~El~~~l~ 146 (222)
..+|+.||+|++|+|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 4588999999999999999998875
No 52
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.28 E-value=3.2e-06 Score=52.28 Aligned_cols=51 Identities=31% Similarity=0.373 Sum_probs=40.6
Q ss_pred CCCcccHHHHHHHHhcCCCC-CchhhhHHHhhhhhccCCCCCccHHHHHHHHH
Q 027496 95 KDGLIHKEELQVALFQAPYG-ENLFLDRVVAFRLYDLRQTGYIEREEVKQMVA 146 (222)
Q Consensus 95 ~~G~I~~~ef~~~l~~~~~~-~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~ 146 (222)
.+|.|+.++|..++...... .+. .+...+|+.+|.|++|+|+++||..++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~-~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSE-EEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCH-HHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCH-HHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 37999999999999654433 222 3456699999999999999999999874
No 53
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.28 E-value=1.2e-05 Score=69.39 Aligned_cols=178 Identities=11% Similarity=0.106 Sum_probs=107.8
Q ss_pred HHHHHHHhhccCCCCCCChhhhhhcccccch-------hhH-------HHHHHHHhhhhcCCCCCCCCCCCHHHHHHHHh
Q 027496 5 ANRSFLRAFDYDGSSSLTFGERICAACIPLI-------AII-------EAVVITVASCFRYRPPVQKCRFDVGDLARLAA 70 (222)
Q Consensus 5 ~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~-------~~~-------~~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~ 70 (222)
|...+|=.+++..+||+|..+.+..-.+... .++ -+....+-..|-.-++..++.++.+++.....
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 4566777889999999999998876554110 000 00011111113334455567788888876654
Q ss_pred hcCCCHHHHHHHHHHHH-hhccCCCCCCcccHHHHHHHHhcCC-CCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 71 ESRFSVNELEALSELYK-NLSCSIIKDGLIHKEELQVALFQAP-YGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 71 ~~~~t~~ei~~l~~~F~-~~d~~~~~~G~I~~~ef~~~l~~~~-~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
.+ +|.-=+++++.... .... -.+|.+++++|...+...- ..+. ....+.|+..|.+++|.|+..|++.+....
T Consensus 306 ~t-lt~~ivdRIFs~v~r~~~~--~~eGrmdykdFv~FilA~e~k~t~--~SleYwFrclDld~~G~Lt~~el~~fyeeq 380 (493)
T KOG2562|consen 306 HT-LTERIVDRIFSQVPRGFTV--KVEGRMDYKDFVDFILAEEDKDTP--ASLEYWFRCLDLDGDGILTLNELRYFYEEQ 380 (493)
T ss_pred cc-hhhHHHHHHHhhcccccee--eecCcccHHHHHHHHHHhccCCCc--cchhhheeeeeccCCCcccHHHHHHHHHHH
Confidence 43 44333454444111 1111 2578888888876554321 1121 223458999999999999999999988765
Q ss_pred HHHhcCC-CCHHHHHHHHHHHHHHcCCCCCCCccHHHHHH
Q 027496 149 LMESEIK-LPDDLLEAIIDKTFADADIDKDGRINKEEWKE 187 (222)
Q Consensus 149 ~~~~g~~-~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~ 187 (222)
+...-.. ..+--++.++.+++..+-+...|+||.++|+.
T Consensus 381 ~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 381 LQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 4332111 11112456677777788888899999999988
No 54
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.26 E-value=9.1e-06 Score=55.71 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhc-cCCCCCC-cccHHHHHHHHhc-----CCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 78 ELEALSELYKNLS-CSIIKDG-LIHKEELQVALFQ-----APYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 78 ei~~l~~~F~~~d-~~~~~~G-~I~~~ef~~~l~~-----~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
-+..+.+.|..+| .+ ++| .|+.+||..+|.. .+.... ..+...+++.+|.|++|.|+++||..++..+
T Consensus 6 ~~~~l~~aF~~fD~~d--gdG~~I~~~eL~~ll~~~~~~~lg~~~~-~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGRE--GDKHKLKKSELKELINNELSHFLEEIKE-QEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccC--CCcCEECHHHHHHHHHHHhHHHhcCCCC-HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3677888899987 55 899 6999999999976 322211 1233447789999999999999999988654
No 55
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.23 E-value=2.6e-05 Score=56.95 Aligned_cols=110 Identities=14% Similarity=0.124 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccC--CCCCccHHHHHHHHHHHHHH
Q 027496 74 FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLR--QTGYIEREEVKQMVAAILME 151 (222)
Q Consensus 74 ~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d--~~G~Is~~El~~~l~~~~~~ 151 (222)
+++++...++..|..+|.. +||+|+..+...++..++.... ..+...+...++.+ +-..|++++|.-++.++ ..
T Consensus 5 ~~~d~~~e~ke~F~lfD~~--gD~ki~~~q~gdvlRalG~nPT-~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~v-ak 80 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRT--GDGKISGSQVGDVLRALGQNPT-NAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQV-AK 80 (152)
T ss_pred cCcchHHHHHHHHHHHhcc--CcccccHHHHHHHHHHhcCCCc-HHHHHHHHcCcccchhhhhhhhHHHHHHHHHHH-Hh
Confidence 5666778888889999987 9999999998888765433221 12334455666666 45789999999998776 33
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 152 SEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 152 ~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
.....+-++.-+-+ +.+|++++|+|...|+..++..
T Consensus 81 nk~q~t~edfvegL----rvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 81 NKDQGTYEDFVEGL----RVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred ccccCcHHHHHHHH----HhhcccCCcceeHHHHHHHHHH
Confidence 33445555544444 7999999999999999998864
No 56
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.22 E-value=2.5e-06 Score=58.38 Aligned_cols=67 Identities=15% Similarity=0.323 Sum_probs=48.3
Q ss_pred HHHhhhhhccCCCCCccHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 121 RVVAFRLYDLRQTGYIEREEVKQMVAAILME-SEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 121 ~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~-~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
.+..|..|- .+.|.++..||+.+|..=+.. ++..-++. .++.+|+..|.|+||.|+|+||+.++..-
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~----~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPM----AVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHH----HHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 355888887 346799999999998643222 22233444 45556689999999999999999998653
No 57
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.21 E-value=1e-05 Score=55.30 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhcc--CCCCCCcccHHHHHHHHhc-CCCCC---chhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 76 VNELEALSELYKNLSC--SIIKDGLIHKEELQVALFQ-APYGE---NLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 76 ~~ei~~l~~~F~~~d~--~~~~~G~I~~~ef~~~l~~-~~~~~---~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
+++++.+...|..+|. + ++|.|+.++|..++.. .+... ....+...+++.+|.+++|.|++++|..++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~--~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEG--DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccC--CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4567888999999999 6 9999999999999864 22110 011233447899999999999999999988543
No 58
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.19 E-value=1.7e-05 Score=54.30 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhccCCCC-CCcccHHHHHHHHhcC-CCCCc-hhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 78 ELEALSELYKNLSCSIIK-DGLIHKEELQVALFQA-PYGEN-LFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 78 ei~~l~~~F~~~d~~~~~-~G~I~~~ef~~~l~~~-~~~~~-~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
.+..+...|.+++.+ ++ +|+|+.+||..++... +.+.. ...+...+++.+|.|++|.|+++||..++..+
T Consensus 8 ~~~~~i~~F~~y~~~-~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 8 AIGLLVAIFHKYSGR-EGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHcc-CCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 466777888888873 35 8999999999999631 11211 12344457899999999999999999988654
No 59
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.19 E-value=7e-06 Score=59.13 Aligned_cols=64 Identities=19% Similarity=0.114 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHH
Q 027496 75 SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMV 145 (222)
Q Consensus 75 t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l 145 (222)
.+.....+.-.|..+|.| +||.|+.+|+..+. .. ... ......|+.+|.|++|+||.+||...+
T Consensus 43 ~~~~~~~l~w~F~~lD~d--~DG~Ls~~EL~~~~-l~-~~e---~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGN--YDGKLSHHELAPIR-LD-PNE---HCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred hHHHHHHHHHHHHHHCCC--CCCcCCHHHHHHHH-cc-chH---HHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 455677788899999997 99999999998765 11 111 111237899999999999999999987
No 60
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.18 E-value=1.1e-05 Score=51.74 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=47.9
Q ss_pred HHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 83 SELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 83 ~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
.+.|..+|++ ++|.|+.+|+..++....... .+...+|+.+|.+++|.|+++||..++..+
T Consensus 2 ~~~F~~~D~~--~~G~i~~~el~~~l~~~g~~~---~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPD--GDGLISGDEARPFLGKSGLPR---SVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCC--CCCcCcHHHHHHHHHHcCCCH---HHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 3568888886 999999999999987653311 233457899999999999999999987543
No 61
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.16 E-value=1.9e-05 Score=54.47 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=51.2
Q ss_pred HHHHHHHHHhhc-cCCCCCC-cccHHHHHHHHhc-CCC--C-CchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHH
Q 027496 79 LEALSELYKNLS-CSIIKDG-LIHKEELQVALFQ-APY--G-ENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAIL 149 (222)
Q Consensus 79 i~~l~~~F~~~d-~~~~~~G-~I~~~ef~~~l~~-~~~--~-~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~ 149 (222)
+..+.+.|..+| .+ ++| .|+.+||..++.. .+. + .....+...+|+.+|.|++|.|+++||..++..+.
T Consensus 8 ~~~l~~~F~~fDd~d--g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKE--GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhccc--CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 466778888886 75 999 5999999999964 211 1 11113344588999999999999999999886553
No 62
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.14 E-value=7.6e-06 Score=67.70 Aligned_cols=108 Identities=13% Similarity=0.157 Sum_probs=81.6
Q ss_pred HHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHH
Q 027496 80 EALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDD 159 (222)
Q Consensus 80 ~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~ 159 (222)
..+...|..+|.+ ++|.+++.|....++-.........-...+|++|+.+.||+++.++|.-+|+.. +|...-
T Consensus 259 d~l~~~f~LFde~--~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~---lgv~~l-- 331 (412)
T KOG4666|consen 259 DKLAPTFMLFDEG--TTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV---LGVEVL-- 331 (412)
T ss_pred hhhhhhhheecCC--CCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh---cCccee--
Confidence 4556677777775 899999999888876654433333444569999999999999999999988643 342211
Q ss_pred HHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHHh
Q 027496 160 LLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLKN 198 (222)
Q Consensus 160 ~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~ 198 (222)
.+-.+|...+...+|+|+|++|.+++..+|++...
T Consensus 332 ----~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a~~ 366 (412)
T KOG4666|consen 332 ----RVPVLFPSIEQKDDPKIYASNFRKFAATEPNLALS 366 (412)
T ss_pred ----eccccchhhhcccCcceeHHHHHHHHHhCchhhhh
Confidence 13445678888889999999999999999998644
No 63
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.13 E-value=5.8e-06 Score=63.97 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=45.6
Q ss_pred HHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 122 VVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 122 ~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
-.+|+.||.+.||+|+..||+.+|. .+|.+=+- --++.+++.+|-|.||+|||-||+-+..
T Consensus 102 ~~~Fk~yDe~rDgfIdl~ELK~mmE----KLgapQTH----L~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 102 ESMFKQYDEDRDGFIDLMELKRMME----KLGAPQTH----LGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHhcccccccccHHHHHHHHH----HhCCchhh----HHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 3488999999999999999999884 34543222 2344444788999999999999987765
No 64
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.11 E-value=2.6e-05 Score=53.53 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHh-hccCCCCCC-cccHHHHHHHHhcCC----CCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 77 NELEALSELYKN-LSCSIIKDG-LIHKEELQVALFQAP----YGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 77 ~ei~~l~~~F~~-~d~~~~~~G-~I~~~ef~~~l~~~~----~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
..+..|...|.. .+.+ ++| +|+.+||...+.... .......+...+++.+|.|++|.|+++||..++..+
T Consensus 6 ~~i~~l~~~F~~y~~~d--g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKD--GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccC--CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 347788888988 4454 665 999999999997631 111111233447899999999999999999988655
No 65
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.08 E-value=2.5e-05 Score=54.19 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhcc-CCCC-CCcccHHHHHHHHhc-CC--CCCc-hhhhHHHhhhhhccCCCCCccHHHHHHHHH
Q 027496 79 LEALSELYKNLSC-SIIK-DGLIHKEELQVALFQ-AP--YGEN-LFLDRVVAFRLYDLRQTGYIEREEVKQMVA 146 (222)
Q Consensus 79 i~~l~~~F~~~d~-~~~~-~G~I~~~ef~~~l~~-~~--~~~~-~~~~~~~~F~~~D~d~~G~Is~~El~~~l~ 146 (222)
+..+...|..+|. + + +|.|+.+|+..++.. .+ .+.. ...+...+++.+|.+++|.|+++||..++.
T Consensus 7 ~~~l~~~F~~~D~~d--g~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 7 MESLILTFHRYAGKD--GDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHhccC--CCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 5667888888886 5 6 699999999998864 21 1111 112334578899999999999999998875
No 66
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.06 E-value=3e-05 Score=53.16 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc-CCCCC---chhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 78 ELEALSELYKNLSCSIIKDGLIHKEELQVALFQ-APYGE---NLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 78 ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~-~~~~~---~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
-+..+...|.+++...+++|.|+.+||..++.. .+... ....+...+|+.+|.|++|.|+++||..++..+
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 367788889888875335899999999999963 22111 011334558899999999999999999988654
No 67
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=2.1e-05 Score=55.56 Aligned_cols=65 Identities=23% Similarity=0.352 Sum_probs=55.0
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHH--Hhc----CCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILM--ESE----IKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEF 188 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~--~~g----~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~ 188 (222)
-|++.|.|++|+|+--|+..++.+... ..| +-.++.+++.+++.+.+.-|.|+||.|+|-||.+.
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 789999999999999999999877654 222 23567789999999999999999999999999864
No 68
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.00 E-value=6.4e-05 Score=65.19 Aligned_cols=49 Identities=39% Similarity=0.565 Sum_probs=42.3
Q ss_pred HHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 122 VVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 122 ~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
..+|+.||.|++|+|+.+||.. .+.+|+.+|.|+||.|+++||...+..
T Consensus 337 ~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 337 QEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 4599999999999999999831 245678999999999999999998854
No 69
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.00 E-value=3.3e-05 Score=47.98 Aligned_cols=61 Identities=26% Similarity=0.266 Sum_probs=46.0
Q ss_pred HHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHH
Q 027496 82 LSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMV 145 (222)
Q Consensus 82 l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l 145 (222)
+...|..+|.+ ++|.|++++|..++........ ......+|+.+|.+++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~--~~g~l~~~e~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKD--GDGTISADELKAALKSLGEGLS-EEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCC--CCCcCcHHHHHHHHHHhCCCCC-HHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 34567777876 9999999999999876432221 1223448899999999999999998764
No 70
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.92 E-value=0.0001 Score=57.17 Aligned_cols=108 Identities=18% Similarity=0.251 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHh
Q 027496 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMES 152 (222)
Q Consensus 73 ~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~ 152 (222)
-|+..+|+.+...|+.+|.+ .||+|++.|++..|.+.+... .-.......+..|.|++|.||+.||.-+++.. ..
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~--rDgfIdl~ELK~mmEKLgapQ-THL~lK~mikeVded~dgklSfreflLIfrka--aa 166 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDED--RDGFIDLMELKRMMEKLGAPQ-THLGLKNMIKEVDEDFDGKLSFREFLLIFRKA--AA 166 (244)
T ss_pred HHHHHHHHHHHHHHHHhccc--ccccccHHHHHHHHHHhCCch-hhHHHHHHHHHhhcccccchhHHHHHHHHHHH--hc
Confidence 47899999999999999997 999999999999998753322 11333446688999999999999999887643 22
Q ss_pred cCCCCHHH-HHHHHHHHHHHcCCCCCCCccHHHHHHH
Q 027496 153 EIKLPDDL-LEAIIDKTFADADIDKDGRINKEEWKEF 188 (222)
Q Consensus 153 g~~~~~~~-~~~~~~~~f~~~D~~~dG~Is~~eF~~~ 188 (222)
| .+..+. ...+.+ .+.+|....|.-.-..|-..
T Consensus 167 g-EL~~ds~~~~LAr--~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 167 G-ELQEDSGLLRLAR--LSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred c-ccccchHHHHHHH--hcccchhhhhhhhHHHHHHH
Confidence 3 444432 223321 24578888887666666544
No 71
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.88 E-value=1.6e-05 Score=41.13 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=21.0
Q ss_pred HHHHHHcCCCCCCCccHHHHHHHH
Q 027496 166 DKTFADADIDKDGRINKEEWKEFA 189 (222)
Q Consensus 166 ~~~f~~~D~~~dG~Is~~eF~~~~ 189 (222)
+.+|+.+|.|+||.||++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 457799999999999999998864
No 72
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.87 E-value=4.5e-05 Score=65.99 Aligned_cols=181 Identities=19% Similarity=0.254 Sum_probs=105.0
Q ss_pred HHHHHhhccCCCCCCChhhhhhcccccchhhHHHHHHHHhhhhcCCCCCCCCCCCH----HHHHHHHhhcCC-----CHH
Q 027496 7 RSFLRAFDYDGSSSLTFGERICAACIPLIAIIEAVVITVASCFRYRPPVQKCRFDV----GDLARLAAESRF-----SVN 77 (222)
Q Consensus 7 ~~~~~~L~~d~~~R~t~~e~l~h~w~~~~~~~~~~~~~l~~~f~~~~~~~~~~l~~----~~l~~l~~~~~~-----t~~ 77 (222)
-..|+.+..+..+|+|+..... -|.....+....+..+..... ..+++.+.. ..+..++..+.+ +++
T Consensus 142 ~~~f~k~~~d~~g~it~~~Fi~-~~~~~~~l~~t~~~~~v~~l~---~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pE 217 (493)
T KOG2562|consen 142 ASTFRKIDGDDTGHITRDKFIN-YWMRGLMLTHTRLEQFVNLLI---QAGCSYLRQDDFKPYLQELIATHPLEFLDEEPE 217 (493)
T ss_pred hhhhhhhccCcCCceeHHHHHH-HHHhhhhHHHHHHHHHHHHHh---ccCccceeccccHHHHHHHHhcCCchhhccChh
Confidence 4578889999999999998654 355444343333333333111 112333333 344444443331 222
Q ss_pred H-----HHHHHHHHHhhccCCCCCCcccHHHHHHHHh-----cCCCCC--ch----h--hhHH---HhhhhhccCCCCCc
Q 027496 78 E-----LEALSELYKNLSCSIIKDGLIHKEELQVALF-----QAPYGE--NL----F--LDRV---VAFRLYDLRQTGYI 136 (222)
Q Consensus 78 e-----i~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~-----~~~~~~--~~----~--~~~~---~~F~~~D~d~~G~I 136 (222)
. ...+++.|--+++. +.|+|+.++++.... ...... +. | .... .-|-.+|.|++|.|
T Consensus 218 f~~~Y~~tvi~rIFy~~nrs--~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~li 295 (493)
T KOG2562|consen 218 FQERYAETVIQRIFYYLNRS--RTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLI 295 (493)
T ss_pred HHHHHHHHHhhhhheeeCCc--cCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhcccccccc
Confidence 2 23356778888887 999999999865421 110000 00 0 0001 14777899999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc----CCCCCCCccHHHHHHHHHhCchHHHhcCccch
Q 027496 137 EREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADA----DIDKDGRINKEEWKEFAVRNPSLLKNMTLPYL 204 (222)
Q Consensus 137 s~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~----D~~~dG~Is~~eF~~~~~~~~~~~~~~~~~~~ 204 (222)
+.+++...- ...++ .-+++++|+.+ -.-.+|+++|++|+..+..-..--+.-++.|+
T Consensus 296 dk~~L~ry~-------d~tlt----~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYw 356 (493)
T KOG2562|consen 296 DKEDLKRYG-------DHTLT----ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYW 356 (493)
T ss_pred CHHHHHHHh-------ccchh----hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhh
Confidence 999999863 11233 35788888833 33468999999999998644332223344444
No 73
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.83 E-value=0.00016 Score=57.84 Aligned_cols=179 Identities=12% Similarity=0.072 Sum_probs=96.2
Q ss_pred HHHHHHhhccCCCCCCChhhhhhcccccchhh--HHHHHHHHhhhhcCCCCCCCCCCCHHHHH-HHHhhcCCCHHHHHHH
Q 027496 6 NRSFLRAFDYDGSSSLTFGERICAACIPLIAI--IEAVVITVASCFRYRPPVQKCRFDVGDLA-RLAAESRFSVNELEAL 82 (222)
Q Consensus 6 ~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~~~--~~~~~~~l~~~f~~~~~~~~~~l~~~~l~-~l~~~~~~t~~ei~~l 82 (222)
...+|+..+++..+.|||.+..+ ||...-- -+.....-+-.|...+++++|.+++++.. ++.+..+-+..++..-
T Consensus 103 lmviFsKvDVNtDrkisAkEmqr--wImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekevada 180 (362)
T KOG4251|consen 103 LMVIFSKVDVNTDRKISAKEMQR--WIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEVADA 180 (362)
T ss_pred HHHHHhhcccCccccccHHHHHH--HHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHHHHH
Confidence 45677888888888888888543 5522110 01111111223666677777777777765 3333333344433211
Q ss_pred H------------HHHHhhccCCCCCC---------cccHHHHHHHHhcCCCCCchhhhH-HHhhhhhccCCCCCccHHH
Q 027496 83 S------------ELYKNLSCSIIKDG---------LIHKEELQVALFQAPYGENLFLDR-VVAFRLYDLRQTGYIEREE 140 (222)
Q Consensus 83 ~------------~~F~~~d~~~~~~G---------~I~~~ef~~~l~~~~~~~~~~~~~-~~~F~~~D~d~~G~Is~~E 140 (222)
. +.|..-+.+ ..| .++.+||...+..- .+....... ..+.+.||+||+..+|..|
T Consensus 181 irlneelkVDeEtqevlenlkd--RwyqaDsppadlllteeEflsFLHPE-hSrgmLrfmVkeivrdlDqdgDkqlSvpe 257 (362)
T KOG4251|consen 181 IRLNEELKVDEETQEVLENLKD--RWYQADSPPADLLLTEEEFLSFLHPE-HSRGMLRFMVKEIVRDLDQDGDKQLSVPE 257 (362)
T ss_pred hhccCcccccHHHHHHHHhhhh--hhccccCchhhhhhhHHHHHHHcChH-hhhhhHHHHHHHHHHHhccCCCeeecchh
Confidence 1 112111111 222 33335555444210 000000111 1277899999999999999
Q ss_pred HHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHH
Q 027496 141 VKQMVAAIL-MESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFA 189 (222)
Q Consensus 141 l~~~l~~~~-~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~ 189 (222)
|....-... ...|..+.+-.++...+.+=..+|.|.||.+|++|....+
T Consensus 258 FislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 258 FISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred hhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 987541110 1123445555566666555567899999999999987764
No 74
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.83 E-value=1.8e-05 Score=43.12 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=21.0
Q ss_pred HHhhhhhccCCCCCccHHHHHHHHH
Q 027496 122 VVAFRLYDLRQTGYIEREEVKQMVA 146 (222)
Q Consensus 122 ~~~F~~~D~d~~G~Is~~El~~~l~ 146 (222)
..+|+.||.|++|+|+.+||..+++
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 3488999999999999999999884
No 75
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.75 E-value=0.00014 Score=58.28 Aligned_cols=141 Identities=13% Similarity=0.156 Sum_probs=90.9
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhc---CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCC-CC
Q 027496 40 AVVITVASCFRYRPPVQKCRFDVGDLARLAAES---RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPY-GE 115 (222)
Q Consensus 40 ~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~---~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~-~~ 115 (222)
.....++.+|+..+-+.+++++..++.+.+... ++ ++....-...|+..|+| ++|.|+++||..-+..+.. ..
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHf-qeameeSkthFraVDpd--gDGhvsWdEykvkFlaskghse 174 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHF-QEAMEESKTHFRAVDPD--GDGHVSWDEYKVKFLASKGHSE 174 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHH-HHHHhhhhhheeeeCCC--CCCceehhhhhhHHHhhcCcch
Confidence 334556777888888888899988887655431 11 01112223457788886 9999999999876654321 11
Q ss_pred chh------------hhHHHhhhhhccCCCCCccH---------HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Q 027496 116 NLF------------LDRVVAFRLYDLRQTGYIER---------EEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADI 174 (222)
Q Consensus 116 ~~~------------~~~~~~F~~~D~d~~G~Is~---------~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~ 174 (222)
... .+....|..-+++..|..+. +||..+| .+..+..-+..+++.+...+|.
T Consensus 175 kevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFL-------HPEhSrgmLrfmVkeivrdlDq 247 (362)
T KOG4251|consen 175 KEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFL-------HPEHSRGMLRFMVKEIVRDLDQ 247 (362)
T ss_pred HHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHc-------ChHhhhhhHHHHHHHHHHHhcc
Confidence 110 11223444455566665544 8888776 3344555677788888899999
Q ss_pred CCCCCccHHHHHHHHH
Q 027496 175 DKDGRINKEEWKEFAV 190 (222)
Q Consensus 175 ~~dG~Is~~eF~~~~~ 190 (222)
|+|.++|..||+....
T Consensus 248 dgDkqlSvpeFislpv 263 (362)
T KOG4251|consen 248 DGDKQLSVPEFISLPV 263 (362)
T ss_pred CCCeeecchhhhcCCC
Confidence 9999999999987653
No 76
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=97.72 E-value=4.1e-05 Score=66.50 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=31.1
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
++.+|++.+.++|..||..|+||.++|+|||+.
T Consensus 265 is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~ 297 (382)
T KOG0032|consen 265 ISESAKDFIRKLLEFDPRKRLTAAQALQHPWIK 297 (382)
T ss_pred cCHHHHHHHHHhcccCcccCCCHHHHhcCcccc
Confidence 468999999999999999999999999999993
No 77
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.71 E-value=2.9e-05 Score=40.12 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=16.8
Q ss_pred hhhhhccCCCCCccHHHHHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQM 144 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~ 144 (222)
+|+.+|.|++|.|+.+||..+
T Consensus 4 ~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 4 AFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHH
Confidence 677888888888888888775
No 78
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.68 E-value=0.00013 Score=51.54 Aligned_cols=69 Identities=17% Similarity=0.294 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 74 FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 74 ~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
++++|.....+.|..+++ ++|.|+-++....+........ ....+|.+.|.|++|+++.+||.-+++-+
T Consensus 4 ls~~e~~~y~~~F~~l~~---~~g~isg~~a~~~f~~S~L~~~---~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP---QDGKISGDQAREFFMKSGLPRD---VLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS---STTEEEHHHHHHHHHHTTSSHH---HHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC---CCCeEeHHHHHHHHHHcCCCHH---HHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 577888999999999886 5899999999998877544432 23346699999999999999999988644
No 79
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.61 E-value=0.00022 Score=50.33 Aligned_cols=83 Identities=24% Similarity=0.312 Sum_probs=55.8
Q ss_pred HHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHHhcC
Q 027496 121 RVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLKNMT 200 (222)
Q Consensus 121 ~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~~~ 200 (222)
+..+|+..|. ++|+|+.++.+.++. . .+++.+.+..++ ..+|.|+||+++++||+-+|.--...+..
T Consensus 12 y~~~F~~l~~-~~g~isg~~a~~~f~----~--S~L~~~~L~~IW----~LaD~~~dG~L~~~EF~iAm~Li~~~~~~-- 78 (104)
T PF12763_consen 12 YDQIFQSLDP-QDGKISGDQAREFFM----K--SGLPRDVLAQIW----NLADIDNDGKLDFEEFAIAMHLINRKLNG-- 78 (104)
T ss_dssp HHHHHHCTSS-STTEEEHHHHHHHHH----H--TTSSHHHHHHHH----HHH-SSSSSEEEHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHhcCC-CCCeEeHHHHHHHHH----H--cCCCHHHHHHHH----hhhcCCCCCcCCHHHHHHHHHHHHHHhcC--
Confidence 3458888885 689999999999873 3 357887766666 69999999999999999888532222211
Q ss_pred ccchhhhhhhcCcccccc
Q 027496 201 LPYLTDITTIFPSFVFNT 218 (222)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~ 218 (222)
-+..+...+|..++.+
T Consensus 79 --~~~~lP~~LP~~L~p~ 94 (104)
T PF12763_consen 79 --NGKPLPSSLPPSLIPP 94 (104)
T ss_dssp --TTS---SSSSGGGSSS
T ss_pred --CCCCCchhcCHHHCCC
Confidence 1124455567666654
No 80
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.00015 Score=62.35 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=73.8
Q ss_pred CCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc----CCCCC---------chhh-hH
Q 027496 56 QKCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQ----APYGE---------NLFL-DR 121 (222)
Q Consensus 56 ~~~~l~~~~l~~l~~~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~----~~~~~---------~~~~-~~ 121 (222)
.+|.|+..+-.-++..+..++....- .|+.+|.| |||.|+.+||..+... ...+. +.+. +.
T Consensus 212 ~~GLIsfSdYiFLlTlLS~p~~~F~I---AFKMFD~d--gnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~ 286 (489)
T KOG2643|consen 212 ESGLISFSDYIFLLTLLSIPERNFRI---AFKMFDLD--GNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEV 286 (489)
T ss_pred CCCeeeHHHHHHHHHHHccCccccee---eeeeeecC--CCCcccHHHHHHHHHHHHhccccceecccCccccceehhhh
Confidence 45677777777776665555544443 45666665 9999999999876521 11110 0000 00
Q ss_pred --HHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 122 --VVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 122 --~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
-..-..|-++++|.++.+||.++++.+ .+++++.-|..+|....|.|+-.+|..++...
T Consensus 287 nsaL~~yFFG~rg~~kLs~deF~~F~e~L------------q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 287 NSALLTYFFGKRGNGKLSIDEFLKFQENL------------QEEILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred hhhHHHHhhccCCCccccHHHHHHHHHHH------------HHHHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 012234678888888888888887533 22345555677777777788888887777543
No 81
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.57 E-value=0.00026 Score=61.87 Aligned_cols=93 Identities=18% Similarity=0.131 Sum_probs=56.6
Q ss_pred hcCCCCCCCCCCCHHHHHH-HHhhcCC--CHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhh
Q 027496 49 FRYRPPVQKCRFDVGDLAR-LAAESRF--SVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAF 125 (222)
Q Consensus 49 f~~~~~~~~~~l~~~~l~~-l~~~~~~--t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F 125 (222)
+.....+++...+++++.. ....++. ...++.+|...... . ..||.|+++||+..-...+..+ .-...+|
T Consensus 42 ~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD--~--tKDglisf~eF~afe~~lC~pD---al~~~aF 114 (694)
T KOG0751|consen 42 YASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIAD--Q--TKDGLISFQEFRAFESVLCAPD---ALFEVAF 114 (694)
T ss_pred HhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhh--h--cccccccHHHHHHHHhhccCch---HHHHHHH
Confidence 3333344555667766642 2222221 23445555443333 2 3789999999975433332222 2234599
Q ss_pred hhhccCCCCCccHHHHHHHHHHH
Q 027496 126 RLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 126 ~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
+.||+.++|.+|.+++.+++++.
T Consensus 115 qlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 115 QLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHhcccCCCceehHHHHHHHhcc
Confidence 99999999999999999998653
No 82
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=3.8e-05 Score=65.92 Aligned_cols=37 Identities=8% Similarity=-0.066 Sum_probs=33.2
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccccchhh
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPLIAI 37 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~~~ 37 (222)
++.+|++.+-+||.+||..|+|++|||+|||+...+.
T Consensus 409 Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW~~~~~~ 445 (475)
T KOG0615|consen 409 ISEEALDLINWMLVVDPENRPSADEALNHPWFKDAPC 445 (475)
T ss_pred hhHHHHHHHHHhhEeCcccCcCHHHHhcChhhhcccc
Confidence 5789999999999999999999999999999965443
No 83
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.39 E-value=0.0002 Score=38.89 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.0
Q ss_pred HHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 165 IDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 165 ~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
+..+|+.+|.|++|.|+.+||..++.+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 456789999999999999999999874
No 84
>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]
Probab=97.33 E-value=9.3e-05 Score=60.70 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=30.1
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
+++.+|+.+.++|.+||++|+|+.|+|.|||+
T Consensus 255 is~~~KdLIsrlLqVdp~~Ritake~LaHpff 286 (411)
T KOG0599|consen 255 ISATVKDLISRLLQVDPTKRITAKEALAHPFF 286 (411)
T ss_pred ccccHHHHHHHHHeeCchhcccHHHHhcChHH
Confidence 36779999999999999999999999999999
No 85
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.25 E-value=0.00088 Score=58.22 Aligned_cols=54 Identities=30% Similarity=0.425 Sum_probs=43.4
Q ss_pred HHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHH
Q 027496 80 EALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAIL 149 (222)
Q Consensus 80 ~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~ 149 (222)
..+...|..+|.+ ++|.|+.+||.. ...+|+.+|.|++|.|+.+||..+++..+
T Consensus 334 ~~l~~aF~~~D~d--gdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 334 HAAQEIFRLYDLD--GDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAAL 387 (391)
T ss_pred HHHHHHHHHhCCC--CCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 3345678888886 999999999942 12378999999999999999999986543
No 86
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=97.25 E-value=0.0012 Score=60.41 Aligned_cols=29 Identities=3% Similarity=0.122 Sum_probs=26.6
Q ss_pred HHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 5 ANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 5 ~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
+.+.+.+||.+||.+|+|+.++|+|||+.
T Consensus 426 ~~dLi~~mL~~dP~kR~ta~e~L~Hpff~ 454 (566)
T PLN03225 426 GWELLKSMMRFKGRQRISAKAALAHPYFD 454 (566)
T ss_pred HHHHHHHHccCCcccCCCHHHHhCCcCcC
Confidence 45789999999999999999999999993
No 87
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.24 E-value=0.0031 Score=43.21 Aligned_cols=67 Identities=10% Similarity=0.166 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhccCCCCCCcccHHHHHHHHhc-CC---CCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 79 LEALSELYKNLSCSIIKDGLIHKEELQVALFQ-AP---YGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 79 i~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~-~~---~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
+..|...|.+++. +.|+++..||...+.. .| .........-.+++..|.|+||.|++.||..++..+
T Consensus 7 i~~lI~~FhkYaG---~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAG---EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcC---CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 5667777888775 4679999999988853 21 111111222347899999999999999999998655
No 88
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.14 E-value=0.00024 Score=51.00 Aligned_cols=58 Identities=26% Similarity=0.444 Sum_probs=38.3
Q ss_pred hHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHH
Q 027496 120 DRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKE 187 (222)
Q Consensus 120 ~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~ 187 (222)
...|-|..+|.|+||+|+..|+..+.. .+ .-.+.- +..+|+..|.|+||.||..||..
T Consensus 55 ~~~W~F~~LD~n~d~~L~~~El~~l~~----~l--~~~e~C----~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 55 VVHWKFCQLDRNKDGVLDRSELKPLRR----PL--MPPEHC----ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHH--T-SSEE-TTTTGGGGS----TT--STTGGG----HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhHhhhcCCCCCccCHHHHHHHHH----HH--hhhHHH----HHHHHHHcCCCCCCCCCHHHHcc
Confidence 346789999999999999999998742 11 112222 45556899999999999999975
No 89
>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.0012 Score=60.10 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=30.4
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
+++.|-+.|.+||++||.+|||..|+++|||+
T Consensus 235 Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l 266 (786)
T KOG0588|consen 235 ISSEAQDLLRRMLDVDPSTRITTEEILKHPFL 266 (786)
T ss_pred CCHHHHHHHHHHhccCccccccHHHHhhCchh
Confidence 56789999999999999999999999999999
No 90
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.95 E-value=0.012 Score=57.80 Aligned_cols=107 Identities=19% Similarity=0.287 Sum_probs=75.0
Q ss_pred hcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCC----c--hhhhHHHhhhhhccCCCCCccHHHHHHH
Q 027496 71 ESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGE----N--LFLDRVVAFRLYDLRQTGYIEREEVKQM 144 (222)
Q Consensus 71 ~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~----~--~~~~~~~~F~~~D~d~~G~Is~~El~~~ 144 (222)
..|+|++.+......|+.+|.+ .+|.++.++|..+|...+..- + +.-.........|++.+|+|+..|+..+
T Consensus 2244 ~~GVtEe~L~EFs~~fkhFDke--k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~af 2321 (2399)
T KOG0040|consen 2244 HNGVTEEQLKEFSMMFKHFDKE--KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAF 2321 (2399)
T ss_pred cCCCCHHHHHHHHHHHHHhchh--hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHH
Confidence 3478999999999999999997 999999999999996543221 1 1112333668899999999999999998
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHH
Q 027496 145 VAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWK 186 (222)
Q Consensus 145 l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~ 186 (222)
|-+ ...-.-.+.++|+ ..|+..|. +..+|+-++..
T Consensus 2322 mi~--~ETeNI~s~~eIE----~AfraL~a-~~~yvtke~~~ 2356 (2399)
T KOG0040|consen 2322 MIS--KETENILSSEEIE----DAFRALDA-GKPYVTKEELY 2356 (2399)
T ss_pred HHh--cccccccchHHHH----HHHHHhhc-CCccccHHHHH
Confidence 732 1222234455544 44578877 66677776653
No 91
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=96.94 E-value=0.00054 Score=57.85 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=30.3
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
+++-|.+.+-|||.-||.+|+|++|||+||++
T Consensus 282 a~p~AidLlekmL~fdP~kRita~eAL~hPYl 313 (359)
T KOG0660|consen 282 ANPLAIDLLEKMLVFDPKKRITAEEALAHPYL 313 (359)
T ss_pred CCHHHHHHHHHHhccCccccCCHHHHhcChhh
Confidence 46789999999999999999999999999998
No 92
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.89 E-value=0.0037 Score=37.82 Aligned_cols=47 Identities=28% Similarity=0.537 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 136 IEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 136 Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
+++.|++.+|+ ..+..++++- ...+|+.+|.+++|.+..+||..++.
T Consensus 2 msf~Evk~lLk----~~NI~~~~~y----A~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLK----MMNIEMDDEY----ARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHH----HTT----HHH----HHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHH----HHccCcCHHH----HHHHHHHhcccCCCCccHHHHHHHHH
Confidence 67889999884 5566667654 55566899999999999999998875
No 93
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.82 E-value=0.0094 Score=58.61 Aligned_cols=66 Identities=18% Similarity=0.485 Sum_probs=54.0
Q ss_pred hhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 119 LDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKL-----PDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 119 ~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~-----~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
.++..+|+.||.+.+|.++..+|+.+|+++ +...++ ++...+++++ ..|++.+|+|+.++|++.|.
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl--gY~lpmvEe~~~~p~fe~~ld----~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSL--GYDLPMVEEGEPEPEFEEILD----LVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhc--CCCCcccccCCCChhHHHHHH----hcCCCCcCcccHHHHHHHHH
Confidence 344558999999999999999999999986 333322 3447889994 89999999999999999985
No 94
>PF14658 EF-hand_9: EF-hand domain
Probab=96.81 E-value=0.0047 Score=39.61 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=40.3
Q ss_pred HHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCC-CCccHHHHHHHHH
Q 027496 85 LYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQT-GYIEREEVKQMVA 146 (222)
Q Consensus 85 ~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~-G~Is~~El~~~l~ 146 (222)
.|...|++ +.|.|....+...|.........-.+..-+.+.+|++|. |.|+++.|..+|+
T Consensus 3 ~F~~fD~~--~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQ--KTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCc--CCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 46666665 788888888887776543322221233446677888887 8888888888774
No 95
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.74 E-value=0.015 Score=43.07 Aligned_cols=97 Identities=14% Similarity=0.179 Sum_probs=63.6
Q ss_pred HHHhhhhcCCCCCCCCCCCHHHHHHHHhhc-CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhh-
Q 027496 43 ITVASCFRYRPPVQKCRFDVGDLARLAAES-RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLD- 120 (222)
Q Consensus 43 ~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~-~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~- 120 (222)
.++..+|+.. ++|.++.+.+..+.... .+-+.+++..+ .|+-+|-| +++.|.-.++...+.....+.-..++
T Consensus 74 ~ri~e~FSeD---G~GnlsfddFlDmfSV~sE~APrdlK~~Y-AFkIYDfd--~D~~i~~~DL~~~l~~lTr~eLs~eEv 147 (189)
T KOG0038|consen 74 RRICEVFSED---GRGNLSFDDFLDMFSVFSEMAPRDLKAKY-AFKIYDFD--GDEFIGHDDLEKTLTSLTRDELSDEEV 147 (189)
T ss_pred HHHHHHhccC---CCCcccHHHHHHHHHHHHhhChHHhhhhh-eeEEeecC--CCCcccHHHHHHHHHHHhhccCCHHHH
Confidence 3444456554 46678888887665542 24455555433 47777775 99999999998888664322111111
Q ss_pred -HH--HhhhhhccCCCCCccHHHHHHHH
Q 027496 121 -RV--VAFRLYDLRQTGYIEREEVKQMV 145 (222)
Q Consensus 121 -~~--~~F~~~D~d~~G~Is~~El~~~l 145 (222)
.+ .+....|.||+|.++..||..++
T Consensus 148 ~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 148 ELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred HHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 11 25577899999999999999987
No 96
>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]
Probab=96.65 E-value=0.00095 Score=55.51 Aligned_cols=31 Identities=16% Similarity=0.176 Sum_probs=29.5
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
|.-||+.+.++|..+|+.|+|..+++.|||+
T Consensus 295 Se~aKdlIR~LLkt~PteRlTI~~~m~hpwi 325 (400)
T KOG0604|consen 295 SEAAKDLIRKLLKTEPTERLTIEEVMDHPWI 325 (400)
T ss_pred HHHHHHHHHHHhcCCchhheeHHHhhcCchh
Confidence 5679999999999999999999999999999
No 97
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.65 E-value=0.0032 Score=32.16 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.5
Q ss_pred HHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 166 DKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 166 ~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
+.+|+.+|.+++|.|++.+|..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 45678999999999999999998854
No 98
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=96.64 E-value=0.0012 Score=55.20 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=31.6
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccchh
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLIA 36 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~~ 36 (222)
|+||.+.+.++|..||.+|||+.+||+|+++...+
T Consensus 310 ~~~a~~LL~klL~yDP~kRIta~qAleh~yF~~d~ 344 (438)
T KOG0666|consen 310 DPSALDLLQKLLTYDPIKRITAEQALEHPYFTEDP 344 (438)
T ss_pred CchHHHHHHHHhccCchhhccHHHHhcccccccCC
Confidence 57899999999999999999999999999994443
No 99
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.63 E-value=0.0053 Score=54.28 Aligned_cols=61 Identities=21% Similarity=0.385 Sum_probs=34.0
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
.|...| |++|+|+..|+..++.......| ....+++++++ ...+.|.+|.|+|++|+.++.
T Consensus 24 kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g-~~~~eei~~~l----~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 24 KFNKLD-DQKGYVTVYELPDAFKKAKLPLG-YFVREEIKEIL----GEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHhhc-CCCCeeehHHhHHHHHHhccccc-chhHHHHHHHH----hccCCCcCCccCHHHHHHHHH
Confidence 444444 55555555555555432211111 12233333333 688999999999999999764
No 100
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=96.52 E-value=0.0018 Score=55.45 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=28.4
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
+.+++.+.+||..||.+|+|+.|+|.|||+.
T Consensus 289 ~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~ 319 (359)
T cd07876 289 SQARDLLSKMLVIDPDKRISVDEALRHPYIT 319 (359)
T ss_pred hhHHHHHHHHhccCcccCCCHHHHhcCchhh
Confidence 4578889999999999999999999999983
No 101
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.50 E-value=0.01 Score=35.92 Aligned_cols=48 Identities=19% Similarity=0.126 Sum_probs=31.6
Q ss_pred ccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHH
Q 027496 99 IHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAA 147 (222)
Q Consensus 99 I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~ 147 (222)
+++.|+...|......-+. .-...+|+.+|++++|.+..+||..+++.
T Consensus 2 msf~Evk~lLk~~NI~~~~-~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDD-EYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----H-HHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCH-HHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 6788888887764332211 11234889999999999999999988753
No 102
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=96.49 E-value=0.0018 Score=55.46 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=28.5
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
+.+++.+.+||..||.+|+|+.++|.|||+.
T Consensus 292 ~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~ 322 (364)
T cd07875 292 SQARDLLSKMLVIDASKRISVDEALQHPYIN 322 (364)
T ss_pred HHHHHHHHHhcCcCcccCCCHHHHhcCcccc
Confidence 4578899999999999999999999999994
No 103
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=96.45 E-value=0.11 Score=46.10 Aligned_cols=129 Identities=13% Similarity=0.167 Sum_probs=77.8
Q ss_pred HhhccCCCCCCChhhhhhccc--ccchhhHHHHHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHh
Q 027496 11 RAFDYDGSSSLTFGERICAAC--IPLIAIIEAVVITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALSELYKN 88 (222)
Q Consensus 11 ~~L~~d~~~R~t~~e~l~h~w--~~~~~~~~~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~ei~~l~~~F~~ 88 (222)
...+++...-+|-++.++.-. ..+......++..+.+.-. . .+++.++.+|++.+.... ++++-+ ....|..
T Consensus 43 as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD-~--tKDglisf~eF~afe~~l-C~pDal--~~~aFql 116 (694)
T KOG0751|consen 43 ASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIAD-Q--TKDGLISFQEFRAFESVL-CAPDAL--FEVAFQL 116 (694)
T ss_pred hHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhh-h--cccccccHHHHHHHHhhc-cCchHH--HHHHHHH
Confidence 345566666777777654211 1333334444444444222 2 235589999998775433 344322 2234666
Q ss_pred hccCCCCCCcccHHHHHHHHhcCCCC-------Cchhhh---------------------------HHHhhhhhccCCCC
Q 027496 89 LSCSIIKDGLIHKEELQVALFQAPYG-------ENLFLD---------------------------RVVAFRLYDLRQTG 134 (222)
Q Consensus 89 ~d~~~~~~G~I~~~ef~~~l~~~~~~-------~~~~~~---------------------------~~~~F~~~D~d~~G 134 (222)
+|.. ++|.++++++..++.+.... ++.+.. ...+|+..|+.++|
T Consensus 117 FDr~--~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng 194 (694)
T KOG0751|consen 117 FDRL--GNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNG 194 (694)
T ss_pred hccc--CCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 6665 89999999999998764211 111111 12399999999999
Q ss_pred CccHHHHHHHHHH
Q 027496 135 YIEREEVKQMVAA 147 (222)
Q Consensus 135 ~Is~~El~~~l~~ 147 (222)
.||.=+++..+-.
T Consensus 195 ~is~Ldfq~imvt 207 (694)
T KOG0751|consen 195 FISVLDFQDIMVT 207 (694)
T ss_pred eeeeechHhhhhh
Confidence 9999888887643
No 104
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=96.36 E-value=0.0023 Score=54.58 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=28.3
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
+.+++.+.+||..||.+|+|+.|+++|||+.
T Consensus 285 ~~~~~li~~mL~~dP~~Rps~~ell~hp~~~ 315 (355)
T cd07874 285 SQARDLLSKMLVIDPAKRISVDEALQHPYIN 315 (355)
T ss_pred hHHHHHHHHHhcCCchhcCCHHHHhcCcchh
Confidence 4567889999999999999999999999994
No 105
>PTZ00036 glycogen synthase kinase; Provisional
Probab=96.35 E-value=0.0018 Score=57.28 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=29.4
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
++.+++.+.+||.+||.+|+|+.|++.|||+.
T Consensus 324 ~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~ 355 (440)
T PTZ00036 324 PDDAINFISQFLKYEPLKRLNPIEALADPFFD 355 (440)
T ss_pred CHHHHHHHHHHCCCChhHCcCHHHHhCChhHH
Confidence 35788999999999999999999999999983
No 106
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.30 E-value=0.0025 Score=45.70 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHH
Q 027496 77 NELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQ 143 (222)
Q Consensus 77 ~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~ 143 (222)
.....+.=.|..+|.| +||.|+..|+..+.........- ....|+.+|.|+||.||..|+..
T Consensus 51 ~~~~~~~W~F~~LD~n--~d~~L~~~El~~l~~~l~~~e~C---~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRN--KDGVLDRSELKPLRRPLMPPEHC---ARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T---SSEE-TTTTGGGGSTTSTTGGG---HHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCC--CCCccCHHHHHHHHHHHhhhHHH---HHHHHHHcCCCCCCCCCHHHHcc
Confidence 3445566679999997 99999999997665432111111 12367899999999999999864
No 107
>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription
Probab=96.24 E-value=0.0026 Score=54.79 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=30.2
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~ 35 (222)
+.++.+.+.+||..||.+|+|+.+++.|||+...
T Consensus 261 ~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~ 294 (372)
T cd07853 261 THEAVHLLCRMLVFDPDKRISAADALAHPYLDEG 294 (372)
T ss_pred CHHHHHHHHHhCCCChhhCcCHHHHhcCHhhCCC
Confidence 4567889999999999999999999999999543
No 108
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=96.19 E-value=0.003 Score=53.57 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=28.2
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
+.+.+.+.+||..||.+|+|+.+++.|||+.
T Consensus 272 ~~~~~li~~mL~~dp~~R~s~~ell~hp~~~ 302 (343)
T cd07878 272 PLAIDLLEKMLVLDSDKRISASEALAHPYFS 302 (343)
T ss_pred HHHHHHHHHHcCCChhhCCCHHHHhcCcchh
Confidence 4567889999999999999999999999994
No 109
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=96.18 E-value=0.0032 Score=53.13 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=30.6
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
+..|.+.+-++|..||.+|+||.|+|+|.|+.+
T Consensus 334 se~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e 366 (419)
T KOG0663|consen 334 SEQGFDLLNKLLTYDPGKRITAEDGLKHEYFRE 366 (419)
T ss_pred chhHHHHHHHHhccCccccccHHHhhccccccc
Confidence 567899999999999999999999999999954
No 110
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=96.18 E-value=0.0035 Score=52.82 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=29.2
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
++.+.+.+.++|..||.+|+|+.++++|||+..
T Consensus 263 ~~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~~ 295 (338)
T cd07859 263 DPLALRLLERLLAFDPKDRPTAEEALADPYFKG 295 (338)
T ss_pred ChHHHHHHHHHcCcCcccCCCHHHHhcCchhhh
Confidence 355678999999999999999999999999943
No 111
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.17 E-value=0.017 Score=50.32 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=45.7
Q ss_pred HHHHHHhhccCCCCCCcccHHHHHHHHhcCC---CCCchhhhHHHhhhhhccCCCCCccHHHHHHHHH
Q 027496 82 LSELYKNLSCSIIKDGLIHKEELQVALFQAP---YGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVA 146 (222)
Q Consensus 82 l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~---~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~ 146 (222)
|-..|+-+|.| ++|.|+.+||..+..... ...-.-.....+-+..|.|+||.|+..||.++++
T Consensus 549 LetiF~~iD~D--~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 549 LETIFNIIDAD--NSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHHHhccC--CCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 34578899997 999999999998764321 1110112223366889999999999999999875
No 112
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.12 E-value=0.031 Score=54.77 Aligned_cols=58 Identities=14% Similarity=0.325 Sum_probs=46.8
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
.|+.||+||.|.|+..+|..++. .....+..+++-++ ..+..|.+...+|++|+.-..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame-----~~k~ytqse~dfll----scae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAME-----GHKHYTQSEIDFLL----SCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHh-----ccccchhHHHHHHH----HhhccCccccccHHHHHHHhc
Confidence 89999999999999999999973 33456666655555 677778888899999998764
No 113
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.10 E-value=0.0036 Score=56.28 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=30.6
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
++..|++.+.++|+++|+.|+|++++|.|+|+
T Consensus 241 ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff 272 (592)
T KOG0575|consen 241 LSAEAKDLIRKLLRPNPSERPSLDEVLDHPFF 272 (592)
T ss_pred cCHHHHHHHHHHhcCCcccCCCHHHHhcCHhh
Confidence 46789999999999999999999999999999
No 114
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=95.97 E-value=0.03 Score=49.73 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=58.7
Q ss_pred hcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCC--CCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 71 ESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAP--YGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 71 ~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~--~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
+..+|.+|+..+...|.++| + ++|+|+..++..++.+.. .+.....+...+....+.|.+|.|+++||..++..+
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~--~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-D--QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-C--CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 34689999999999999999 5 899999999999997643 222222233447788899999999999999976443
No 115
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=95.96 E-value=0.0044 Score=53.42 Aligned_cols=36 Identities=3% Similarity=-0.041 Sum_probs=31.9
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccchhh
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLIAI 37 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~~~ 37 (222)
++++.+.+-|+|+.+|.+|+||++||+||++.....
T Consensus 354 ~~~~~dlLdk~le~np~kRitAEeALkHpFF~~~~~ 389 (418)
T KOG1167|consen 354 PALLLDLLDKCLELNPQKRITAEDALKHPFFDEADR 389 (418)
T ss_pred cHHHHHHHHHHccCChhhcccHHHHhcCcCCcchhh
Confidence 458999999999999999999999999999975443
No 116
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.91 E-value=0.0078 Score=30.60 Aligned_cols=24 Identities=42% Similarity=0.642 Sum_probs=18.9
Q ss_pred HhhhhhccCCCCCccHHHHHHHHH
Q 027496 123 VAFRLYDLRQTGYIEREEVKQMVA 146 (222)
Q Consensus 123 ~~F~~~D~d~~G~Is~~El~~~l~ 146 (222)
.+|+.+|.+++|.|+.+||..+++
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHH
Confidence 367888888888888888887763
No 117
>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]
Probab=95.90 E-value=0.0044 Score=51.93 Aligned_cols=30 Identities=10% Similarity=0.128 Sum_probs=27.5
Q ss_pred hHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 4 SANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 4 ~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
-|-+.+++||..+|.+|+|+.++|.||++.
T Consensus 285 ~ardll~~MLvi~pe~Risv~daL~HPY~~ 314 (369)
T KOG0665|consen 285 LARDLLSKMLVIDPEKRISVDDALRHPYIK 314 (369)
T ss_pred HHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence 367889999999999999999999999984
No 118
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.84 E-value=0.011 Score=48.25 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=29.6
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
|..|.+.+-++|..||.+|+++++|+.|.|+
T Consensus 288 d~~a~dLle~ll~~DP~kR~~ad~alnh~~F 318 (376)
T KOG0669|consen 288 DDEALDLLEKLLKLDPTKRIDADQALNHDFF 318 (376)
T ss_pred ChhHHHHHHHHhccCcccCcchHhhhchhhh
Confidence 5689999999999999999999999999999
No 119
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=95.82 E-value=0.0047 Score=52.74 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=27.7
Q ss_pred hHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 4 SANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 4 ~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
.+.+.+.+||..||+.|+|+.++|.|||+.
T Consensus 286 ~~~~li~~~L~~dP~~R~t~~eiL~~~~~~ 315 (353)
T cd07850 286 QARDLLSKMLVIDPEKRISVDDALQHPYIN 315 (353)
T ss_pred HHHHHHHHHcCCChhhCcCHHHHhcChhHh
Confidence 467899999999999999999999999983
No 120
>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati
Probab=95.71 E-value=0.0066 Score=51.47 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=28.9
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
++.+++.+.++|..+|..|+|+.++++|||+.
T Consensus 264 ~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~ 295 (337)
T cd07858 264 NPLAIDLLEKMLVFDPSKRITVEEALAHPYLA 295 (337)
T ss_pred CHHHHHHHHHHhcCChhhccCHHHHHcCcchh
Confidence 45667889999999999999999999999994
No 121
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=95.69 E-value=0.0074 Score=51.34 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=29.1
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
+..+.+.+.+||..+|.+|+|+.++++|||+.
T Consensus 271 s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~ 302 (343)
T cd07851 271 NPLAIDLLEKMLVLDPDKRITAAEALAHPYLA 302 (343)
T ss_pred CHHHHHHHHHhCCCChhhCCCHHHHhcCCCcc
Confidence 45677899999999999999999999999994
No 122
>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi
Probab=95.61 E-value=0.0087 Score=50.88 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=29.0
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
+..+++.+.+||..||.+|+|+.++++|||+.
T Consensus 273 ~~~~~~li~~~L~~dP~~R~t~~ell~h~~~~ 304 (342)
T cd07854 273 NPEALDFLEQILTFNPMDRLTAEEALMHPYMS 304 (342)
T ss_pred CHHHHHHHHHHhCCCchhccCHHHHhCCCccc
Confidence 45677889999999999999999999999994
No 123
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=95.54 E-value=0.0071 Score=54.69 Aligned_cols=32 Identities=13% Similarity=0.059 Sum_probs=30.4
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
+|..||+.+-+||+.||..|+++++++.|||+
T Consensus 535 vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~ 566 (612)
T KOG0603|consen 535 VSDEAKDLLQQLLQVDPALRLGADEIGAHPWF 566 (612)
T ss_pred cCHHHHHHHHHhccCChhhCcChhhhccCcch
Confidence 46789999999999999999999999999999
No 124
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.32 E-value=0.15 Score=46.13 Aligned_cols=146 Identities=11% Similarity=0.134 Sum_probs=92.0
Q ss_pred hhhHHHHHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhc---CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHH---
Q 027496 35 IAIIEAVVITVASCFRYRPPVQKCRFDVGDLARLAAES---RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVAL--- 108 (222)
Q Consensus 35 ~~~~~~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~---~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l--- 108 (222)
..+.+..+.+++..|.-++.+.++.++..|+..+++.. .+++.+++.+...-....+++-.++.++...|.-.-
T Consensus 187 qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lf 266 (625)
T KOG1707|consen 187 QELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLF 266 (625)
T ss_pred ccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHH
Confidence 33556777788888888888889999999998887764 357888888777777766652224455555554221
Q ss_pred -------------hcCCCCCch-------------------------hhhHHHhhhhhccCCCCCccHHHHHHHHHHHHH
Q 027496 109 -------------FQAPYGENL-------------------------FLDRVVAFRLYDLRQTGYIEREEVKQMVAAILM 150 (222)
Q Consensus 109 -------------~~~~~~~~~-------------------------~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~ 150 (222)
...+..+.. ..-..-.|..||.|+||.++.+|+..+.+..
T Consensus 267 iergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~-- 344 (625)
T KOG1707|consen 267 IERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTA-- 344 (625)
T ss_pred HHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhC--
Confidence 111111110 0011228999999999999999999987532
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 151 ESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 151 ~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
.+...+..--. ...-.+..|.++|.-|+..+.
T Consensus 345 -P~~pW~~~~~~-------~~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 345 -PGSPWTSSPYK-------DSTVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred -CCCCCCCCccc-------ccceecccceeehhhHHHHHH
Confidence 12222211000 112234789999999988764
No 125
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=95.31 E-value=0.01 Score=50.34 Aligned_cols=32 Identities=6% Similarity=-0.014 Sum_probs=28.2
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
...++.+.++|.+||.+|+|+.+++.|||+..
T Consensus 273 ~~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~ 304 (333)
T cd06650 273 AEFQDFVNKCLIKNPAERADLKQLMVHAFIKR 304 (333)
T ss_pred HHHHHHHHHhccCCcccCcCHHHHhhCHHHhc
Confidence 34578888999999999999999999999854
No 126
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.25 E-value=0.014 Score=48.79 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=50.6
Q ss_pred HHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCch
Q 027496 122 VVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPS 194 (222)
Q Consensus 122 ~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~ 194 (222)
.|-|..+|+|+++.|...|++-+=+-+ .....+..-.+.+|+..|.|+|.+||++|+...+...++
T Consensus 336 ~w~F~qLdkN~nn~i~rrEwKpFK~~l-------~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 336 HWYFNQLDKNSNNDIERREWKPFKRVL-------LKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeecccccCccchhhcchHHHHH-------HhhccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 468999999999999999987753221 122234456777789999999999999999999865543
No 127
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.21 E-value=0.072 Score=35.66 Aligned_cols=66 Identities=23% Similarity=0.417 Sum_probs=46.9
Q ss_pred HhhhhhccCCCCCccHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 123 VAFRLYDLRQTGYIEREEVKQMVAAILMESEI-KLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 123 ~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~-~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
.+|+.|-. +.+.||.++|..+|. ...+. .++.+.+..++.+.-........+.+|+++|...|...
T Consensus 4 ~if~~ys~-~~~~mt~~~f~~FL~---~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 4 EIFRKYSS-DKEYMTAEEFRRFLR---EEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHCT-TSSSEEHHHHHHHHH---HTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHHHHhC-CCCcCCHHHHHHHHH---HHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36788854 789999999999985 34444 46888888888542222222246899999999999654
No 128
>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and
Probab=95.20 E-value=0.013 Score=49.25 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=28.8
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
++.+.+.+.++|.++|.+|+|+.+++.|||+.
T Consensus 262 ~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~ 293 (330)
T cd07834 262 SPEAIDLLEKMLVFDPKKRITADEALAHPYLA 293 (330)
T ss_pred CHHHHHHHHHHccCChhhCCCHHHHHhCccHH
Confidence 35677889999999999999999999999994
No 129
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=95.20 E-value=0.013 Score=49.64 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=28.6
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
++.+.+.+.++|..+|.+|+|+.+++.|||+.
T Consensus 265 ~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~ 296 (336)
T cd07849 265 DPKALDLLDKMLTFNPHKRITVEEALAHPYLE 296 (336)
T ss_pred CcHHHHHHHHHcCCChhhCcCHHHHhcCcccc
Confidence 35577889999999999999999999999993
No 130
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=95.14 E-value=0.014 Score=49.29 Aligned_cols=34 Identities=15% Similarity=0.135 Sum_probs=30.9
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
+++.|++.+.++|.++|..|+||.+.|.|||+..
T Consensus 248 ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~ 281 (313)
T KOG0198|consen 248 LSDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQ 281 (313)
T ss_pred cCHHHHHHHHHHhhcCcccCcCHHHHhhChhhhc
Confidence 4678999999999999999999999999999843
No 131
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=95.14 E-value=0.011 Score=52.19 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=28.8
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
..-+++.+.+||+|||..||+..++-.|||+
T Consensus 345 ~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwv 375 (576)
T KOG0585|consen 345 NEDLKDLIKRLLEKDPEQRITLPDIKLHPWV 375 (576)
T ss_pred cHHHHHHHHHHhhcChhheeehhhheeccee
Confidence 3567899999999999999999999999999
No 132
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.13 E-value=0.024 Score=51.92 Aligned_cols=37 Identities=5% Similarity=-0.086 Sum_probs=31.2
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccchhhH
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLIAII 38 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~~~~ 38 (222)
++|-.+.+.++|+++|..|+++.++|+|||+...+..
T Consensus 262 s~~F~DfLk~cL~Knp~~Rp~aaqll~Hpfv~~~~Sn 298 (1187)
T KOG0579|consen 262 SRSFSDFLKRCLVKNPRNRPPAAQLLKHPFVQNAPSN 298 (1187)
T ss_pred hhHHHHHHHHHHhcCCccCCCHHHHhhCcccccCCcc
Confidence 4567788999999999999999999999999544433
No 133
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=95.04 E-value=0.0082 Score=50.57 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=31.7
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
+++.||+.+.++|.+|+..|+++.+++.|||++.
T Consensus 333 IS~eakdlisnLlvrda~~rlsa~~vlnhPw~~~ 366 (463)
T KOG0607|consen 333 ISSEAKDLISNLLVRDAKQRLSAAQVLNHPWVQR 366 (463)
T ss_pred hhHHHHHHHHHHHhccHHhhhhhhhccCCccccc
Confidence 5789999999999999999999999999999944
No 134
>PHA03210 serine/threonine kinase US3; Provisional
Probab=95.04 E-value=0.016 Score=52.25 Aligned_cols=31 Identities=6% Similarity=0.068 Sum_probs=26.8
Q ss_pred hHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 4 SANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 4 ~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
...+.+.+||..||.+|+|+.|+|.|||+..
T Consensus 429 ~~~~li~kmL~~DP~~Rpsa~elL~hp~f~~ 459 (501)
T PHA03210 429 DFEYPLVKMLTFDWHLRPGAAELLALPLFSA 459 (501)
T ss_pred HHHHHHHHHhccCcccCcCHHHHhhChhhhc
Confidence 3455678999999999999999999999944
No 135
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=95.02 E-value=0.016 Score=49.21 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=28.1
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
..+++.+.++|..||.+|+|+.+++.|||+.
T Consensus 271 ~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~ 301 (342)
T cd07879 271 PQAVDLLEKMLELDVDKRLTATEALEHPYFD 301 (342)
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHhcCcchh
Confidence 4567889999999999999999999999993
No 136
>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]
Probab=95.00 E-value=0.013 Score=48.02 Aligned_cols=36 Identities=11% Similarity=0.189 Sum_probs=31.1
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccchhh
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLIAI 37 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~~~ 37 (222)
++-|.+.+-++|..+|.+|+|+.|+|+|+|+...|.
T Consensus 254 s~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~P~ 289 (318)
T KOG0659|consen 254 SSDALDLLSKMLTYNPKKRITASQALKHPYFKSLPL 289 (318)
T ss_pred cHHHHHHHHhhhccCchhcccHHHHhcchhhhcCCC
Confidence 456788899999999999999999999999955444
No 137
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=94.95 E-value=0.017 Score=49.20 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=28.0
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
..+.+.+.+||..||.+|+|+.++++|||+.
T Consensus 272 ~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~ 302 (343)
T cd07880 272 PLAVNVLEKMLVLDAESRITAAEALAHPYFE 302 (343)
T ss_pred hHHHHHHHHHcCCChhhCCCHHHHhcCccHh
Confidence 4567888899999999999999999999994
No 138
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.95 E-value=0.21 Score=34.22 Aligned_cols=72 Identities=11% Similarity=0.242 Sum_probs=44.3
Q ss_pred HHHhhhhhccCCCCCccHHHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchH
Q 027496 121 RVVAFRLYDLRQTGYIEREEVKQMVAAILM---ESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSL 195 (222)
Q Consensus 121 ~~~~F~~~D~d~~G~Is~~El~~~l~~~~~---~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~ 195 (222)
..++|+.+ .|++|.++..-|...|+.+.. ..|+..+--.++..++.+|... .....|+.++|+.+++..|..
T Consensus 5 yRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq~ 79 (90)
T PF09069_consen 5 YRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQS 79 (90)
T ss_dssp HHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--TT
T ss_pred HHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCCe
Confidence 46688888 588999999999988887643 2333222222667788778877 345569999999999988753
No 139
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=94.94 E-value=0.014 Score=48.35 Aligned_cols=34 Identities=12% Similarity=0.014 Sum_probs=29.8
Q ss_pred CchHHHHHHHhhccCCCCCCC-----hhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLT-----FGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t-----~~e~l~h~w~~~~ 35 (222)
++.+++.+.+||..||.+|++ +.+++.|||+...
T Consensus 222 ~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~ 260 (291)
T cd05612 222 DLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSV 260 (291)
T ss_pred CHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCccccCC
Confidence 457889999999999999995 9999999999543
No 140
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.87 E-value=0.018 Score=50.01 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=30.7
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
+++++..+.++|..+|..|+|+.+++.|||+..
T Consensus 248 S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~ 280 (370)
T KOG0583|consen 248 SPEARSLIEKMLVPDPSTRITLLEILEHPWFQK 280 (370)
T ss_pred CHHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence 678899999999999999999999999999954
No 141
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.78 E-value=0.073 Score=47.06 Aligned_cols=83 Identities=11% Similarity=0.163 Sum_probs=62.5
Q ss_pred cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHH-H
Q 027496 72 SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAIL-M 150 (222)
Q Consensus 72 ~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~-~ 150 (222)
.++|.++-+++...|+.+-+| .+|.|+=.--++.+.+.. -...+...+|++.|.|.||.++..||..++.-+. +
T Consensus 223 w~IT~EQReYYvnQFrtvQpD--p~gfisGsaAknFFtKSk---lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaR 297 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQPD--PHGFISGSAAKNFFTKSK---LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVAR 297 (737)
T ss_pred cccCHHHHHHHHhhhhcccCC--cccccccHHHHhhhhhcc---CchHHHHHHHhhcccCccccccHHHHHhhHhheeec
Confidence 357999999999999999986 899998777666665421 1235556688999999999999999999886442 3
Q ss_pred HhcCCCCHH
Q 027496 151 ESEIKLPDD 159 (222)
Q Consensus 151 ~~g~~~~~~ 159 (222)
..|..+.+.
T Consensus 298 kNgypLPe~ 306 (737)
T KOG1955|consen 298 KNGYPLPES 306 (737)
T ss_pred ccCCCCCCC
Confidence 455555443
No 142
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=94.75 E-value=0.017 Score=48.63 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=30.8
Q ss_pred CchHHHHHHHhhccCCCCCC-----Chhhhhhcccccchh
Q 027496 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLIA 36 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~-----t~~e~l~h~w~~~~~ 36 (222)
++++.+.+.+||.+||.+|+ ++.+++.|||+....
T Consensus 219 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~~ 258 (323)
T cd05571 219 SPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASIN 258 (323)
T ss_pred CHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcCCCcCCCC
Confidence 56788999999999999999 899999999995543
No 143
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=94.73 E-value=0.02 Score=48.46 Aligned_cols=33 Identities=9% Similarity=0.168 Sum_probs=28.9
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
++...+.+.++|..+|.+|+|+.+++.|||+..
T Consensus 267 ~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~ 299 (334)
T cd07855 267 SPEALDLLSQMLQFDPEERITVEQALQHPFLAQ 299 (334)
T ss_pred CHHHHHHHHHHccCChhhCcCHHHHHhChhhhh
Confidence 345677888999999999999999999999943
No 144
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=94.65 E-value=0.02 Score=51.93 Aligned_cols=28 Identities=11% Similarity=0.215 Sum_probs=26.3
Q ss_pred HHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 6 NRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 6 ~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
++.+.++|+.||..|+|+.+||.|||+.
T Consensus 479 ~dflk~~L~~dP~~R~tp~qal~Hpfl~ 506 (586)
T KOG0667|consen 479 IDFLKRCLEWDPAERITPAQALNHPFLT 506 (586)
T ss_pred HHHHHHHhccCchhcCCHHHHhcCcccc
Confidence 6788899999999999999999999994
No 145
>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co
Probab=94.64 E-value=0.024 Score=47.81 Aligned_cols=32 Identities=9% Similarity=0.189 Sum_probs=28.4
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
++.+.+.+.++|..+|..|+|+.+++.|||+.
T Consensus 265 ~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~ 296 (332)
T cd07857 265 NPLALDLLEKLLAFDPTKRISVEEALEHPYLA 296 (332)
T ss_pred CHHHHHHHHHHccCCcccCCCHHHHhcChhhh
Confidence 34677888899999999999999999999983
No 146
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=94.60 E-value=0.02 Score=48.37 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=29.5
Q ss_pred CchHHHHHHHhhccCCCCCCC------hhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLT------FGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t------~~e~l~h~w~~~~ 35 (222)
+..+++.+.++|.+||..|+| +.++++|||+...
T Consensus 229 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~~ 268 (329)
T cd05588 229 SVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRNI 268 (329)
T ss_pred CHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCCC
Confidence 456889999999999999998 6899999999543
No 147
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=94.27 E-value=0.026 Score=47.68 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=29.1
Q ss_pred CchHHHHHHHhhccCCCCCCC-----hhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLT-----FGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t-----~~e~l~h~w~~~ 34 (222)
++.+++.+.++|.+||.+|++ +.+++.|||+..
T Consensus 239 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~ 276 (329)
T PTZ00263 239 DGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHG 276 (329)
T ss_pred CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCC
Confidence 456788999999999999997 799999999954
No 148
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=94.24 E-value=0.029 Score=47.72 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=28.7
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
++.+++.+.++|..||.+|+|+.+++.|||+.
T Consensus 273 ~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~ 304 (345)
T cd07877 273 NPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 304 (345)
T ss_pred CHHHHHHHHHHcCCChhhcCCHHHHhcChhhh
Confidence 34677888899999999999999999999994
No 149
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=94.23 E-value=0.025 Score=47.59 Aligned_cols=35 Identities=6% Similarity=-0.068 Sum_probs=30.4
Q ss_pred CchHHHHHHHhhccCCCCCCCh------hhhhhcccccchh
Q 027496 2 DSSANRSFLRAFDYDGSSSLTF------GERICAACIPLIA 36 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~------~e~l~h~w~~~~~ 36 (222)
+..+++.+.++|.+||.+|+++ .+++.|||+....
T Consensus 220 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~~ 260 (320)
T cd05590 220 SQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELD 260 (320)
T ss_pred CHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcCCCC
Confidence 4567889999999999999998 8999999996543
No 150
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=94.21 E-value=0.028 Score=47.39 Aligned_cols=34 Identities=12% Similarity=0.005 Sum_probs=29.6
Q ss_pred CchHHHHHHHhhccCCCCCC-----Chhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~-----t~~e~l~h~w~~~~ 35 (222)
++.+.+.+.++|.+||.+|+ ++.++++|||+...
T Consensus 235 ~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~ 273 (332)
T cd05614 235 GPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGL 273 (332)
T ss_pred CHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence 45678889999999999999 78899999999654
No 151
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=94.21 E-value=0.026 Score=47.48 Aligned_cols=33 Identities=6% Similarity=-0.065 Sum_probs=29.7
Q ss_pred CchHHHHHHHhhccCCCCCCCh-----hhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTF-----GERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~-----~e~l~h~w~~~ 34 (222)
+..+.+.+.++|.+||.+|+|+ .+++.|||+..
T Consensus 220 ~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~ 257 (318)
T cd05570 220 SKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFRE 257 (318)
T ss_pred CHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcCCCcCC
Confidence 4567889999999999999999 99999999954
No 152
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=0.63 Score=43.55 Aligned_cols=57 Identities=23% Similarity=0.460 Sum_probs=46.9
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
+|...|+..+|++|-..-+.+|. . ..++...+-.|+ ...|.|+||+++-+||+-.|.
T Consensus 200 lFNa~DktrsG~Lsg~qaR~aL~----q--S~Lpq~~LA~IW----~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 200 LFNALDKTRSGYLSGQQARSALG----Q--SGLPQNQLAHIW----TLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HhhhcccccccccccHHHHHHHH----h--cCCchhhHhhhe----eeeccCCCCcccHHHHHHHHH
Confidence 99999999999999988888872 2 346666665666 588999999999999997774
No 153
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=94.12 E-value=0.028 Score=47.07 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=29.6
Q ss_pred CchHHHHHHHhhccCCCCCC---Chhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSL---TFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~---t~~e~l~h~w~~~~ 35 (222)
++.+.+.+.++|..||.+|+ ++.+++.|||+...
T Consensus 217 ~~~~~~li~~~L~~dp~~R~~~~~~~e~l~hp~~~~~ 253 (312)
T cd05585 217 DRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQL 253 (312)
T ss_pred CHHHHHHHHHHcCCCHHHcCCCCCHHHHHcCCCcCCC
Confidence 56788999999999999998 47899999999654
No 154
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=94.08 E-value=0.18 Score=42.64 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=67.0
Q ss_pred CCHHHH----HHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCC--CchhhhHHHhhhhhccCCCCCccHHHHHHHHHH
Q 027496 74 FSVNEL----EALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG--ENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAA 147 (222)
Q Consensus 74 ~t~~ei----~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~--~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~ 147 (222)
.|..|+ .+|...|..+-.+ .++...-..+..+-..+... ..--.+.-|.|..+|.|.+|.++..|++.+-
T Consensus 201 Ct~qeL~~lg~RL~dWF~~lhe~--s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~-- 276 (434)
T KOG3555|consen 201 CTDQELRRLGNRLRDWFKALHED--SSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE-- 276 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhh--hhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh--
Confidence 455555 3455667666654 44544444433332111110 0111345789999999999999999999873
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCc
Q 027496 148 ILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNP 193 (222)
Q Consensus 148 ~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~ 193 (222)
++ -.+. -++-+|...|...||.||-.||.....+..
T Consensus 277 ----ld--knE~----CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 277 ----LD--KNEA----CIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred ----cc--Cchh----HHHHHHhhhcccccCccccchhhhhhccCC
Confidence 22 2233 345555799999999999999999886543
No 155
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=93.89 E-value=0.035 Score=46.67 Aligned_cols=34 Identities=9% Similarity=-0.101 Sum_probs=30.0
Q ss_pred CchHHHHHHHhhccCCCCCC-------Chhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSL-------TFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~-------t~~e~l~h~w~~~~ 35 (222)
++.+.+.+.++|.+||..|+ ++.+++.|||+...
T Consensus 220 ~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~~ 260 (321)
T cd05591 220 SKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEI 260 (321)
T ss_pred CHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcCCccCCC
Confidence 56778899999999999999 89999999999543
No 156
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=0.25 Score=35.22 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcC-----------CCCCchhhhHH--HhhhhhccCCCCCccHH
Q 027496 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQA-----------PYGENLFLDRV--VAFRLYDLRQTGYIERE 139 (222)
Q Consensus 73 ~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~-----------~~~~~~~~~~~--~~F~~~D~d~~G~Is~~ 139 (222)
.+|+++++ +..|+..|-| ++|.|+=-|+..++... |..+....+.+ -+.+--|.|++|+|+..
T Consensus 62 ~mtpeqlq--fHYF~MHDld--knn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYg 137 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLD--KNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYG 137 (144)
T ss_pred hCCHHHHh--hhhhhhhccC--cCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHH
Confidence 57888776 5678888886 89999999998887532 11111111111 16677899999999999
Q ss_pred HHHHH
Q 027496 140 EVKQM 144 (222)
Q Consensus 140 El~~~ 144 (222)
||...
T Consensus 138 EflK~ 142 (144)
T KOG4065|consen 138 EFLKR 142 (144)
T ss_pred HHHhh
Confidence 99764
No 157
>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.84 E-value=0.049 Score=48.09 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=29.2
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
++.|...+-+||.-||.+|+||.++|+||++
T Consensus 264 s~~~~~li~~ll~WDP~kRpTA~~al~~pff 294 (538)
T KOG0661|consen 264 SSEAASLIERLLAWDPDKRPTASQALQHPFF 294 (538)
T ss_pred CHHHHHHHHHHhcCCCccCccHHHHhcCccc
Confidence 5678889999999999999999999999999
No 158
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=93.80 E-value=0.15 Score=48.04 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=28.2
Q ss_pred hHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 4 SANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 4 ~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
.|++.+-+||+.+|..|+||.++|.||++
T Consensus 742 eA~dLI~~ml~~dP~~RPsa~~VL~HPlF 770 (903)
T KOG1027|consen 742 EAKDLISRMLNPDPQLRPSATDVLNHPLF 770 (903)
T ss_pred HHHHHHHHhcCCCcccCCCHHHHhCCCcc
Confidence 79999999999999999999999999998
No 159
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=93.72 E-value=0.32 Score=40.68 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=48.0
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHH-HhcCCCCHHHHH-------HHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILM-ESEIKLPDDLLE-------AIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~-~~g~~~~~~~~~-------~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
.|.+.|.|++|+++-.|+..++..=+. ...++-.++.+. .+=..+++.+|.|.|..||.+||+..-.+
T Consensus 249 FF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred heeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 789999999999999999887653222 222322222222 23345678899999999999999887643
No 160
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=93.69 E-value=0.045 Score=46.13 Aligned_cols=33 Identities=12% Similarity=0.084 Sum_probs=27.4
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~ 35 (222)
++.+.+.+.++|. +|..|+|+.++++|||+...
T Consensus 237 ~~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~~ 269 (330)
T cd05601 237 SSDFLDLIQSLLC-GQKERLGYEGLCCHPFFSKI 269 (330)
T ss_pred CHHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCCC
Confidence 4556777778886 99999999999999999543
No 161
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=93.59 E-value=0.076 Score=44.45 Aligned_cols=33 Identities=6% Similarity=-0.203 Sum_probs=28.6
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhcccccch
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~ 35 (222)
.+.++.+.++|.++|..|+|+.+++.|||+...
T Consensus 247 ~~l~~li~~~l~~~P~~Rp~~~~~l~~~~~~~~ 279 (313)
T cd06633 247 DSFRGFVDYCLQKIPQERPASAELLRHDFVRRD 279 (313)
T ss_pred HHHHHHHHHHccCChhhCcCHHHHhcCcccCCC
Confidence 356778889999999999999999999999443
No 162
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=93.47 E-value=0.058 Score=45.58 Aligned_cols=30 Identities=13% Similarity=0.213 Sum_probs=27.8
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
.+..+.+.++|..+|.+|+|+.+++.|||+
T Consensus 262 ~~~~~li~~~l~~~P~~R~t~~ell~~~~~ 291 (328)
T cd07856 262 PSAIDLLEKMLVFDPQKRISAAEALAHPYL 291 (328)
T ss_pred HHHHHHHHHHcCCChhhCCCHHHHhcCCcc
Confidence 467788889999999999999999999999
No 163
>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul
Probab=93.47 E-value=0.052 Score=45.87 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=28.7
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
+....+.+.+++..+|..|+|+.+++.|||+..
T Consensus 268 ~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~ 300 (337)
T cd07852 268 SDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQ 300 (337)
T ss_pred CHHHHHHHHHhccCCcccccCHHHHhhChhhhh
Confidence 345677888999999999999999999999943
No 164
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=93.43 E-value=0.045 Score=46.29 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=29.7
Q ss_pred CchHHHHHHHhhccCCCCCC-----Chhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~-----t~~e~l~h~w~~~~ 35 (222)
++.+.+.+.++|.+||.+|+ ++.++++|||+...
T Consensus 219 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~ 257 (328)
T cd05593 219 SADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGV 257 (328)
T ss_pred CHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence 45678889999999999998 89999999999543
No 165
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=93.41 E-value=0.058 Score=47.93 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=30.6
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
++++|++.+-.||..||.+|.||.+||.|+|+
T Consensus 372 ~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF 403 (560)
T KOG0600|consen 372 FPASALDLLEKLLSLDPDKRGTASSALQSEYF 403 (560)
T ss_pred CCHHHHHHHHHHhccCccccccHHHHhcCccc
Confidence 47899999999999999999999999999999
No 166
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=93.36 E-value=0.047 Score=47.41 Aligned_cols=31 Identities=19% Similarity=0.054 Sum_probs=29.1
Q ss_pred CchHHHHHHHhhccCCCCCCC----hhhhhhcccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLT----FGERICAACI 32 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t----~~e~l~h~w~ 32 (222)
++.|++.+.++|.|||++|+- |.|+-+||++
T Consensus 361 s~~akDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF 395 (459)
T KOG0610|consen 361 SSAAKDLIRKLLVKDPSKRLGSKRGAAEIKRHPFF 395 (459)
T ss_pred hhHHHHHHHHHhccChhhhhccccchHHhhcCccc
Confidence 568899999999999999999 9999999998
No 167
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.35 E-value=0.049 Score=48.31 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=26.1
Q ss_pred HHHHHhhccCCCCCCChhhhhhcccccchh
Q 027496 7 RSFLRAFDYDGSSSLTFGERICAACIPLIA 36 (222)
Q Consensus 7 ~~~~~~L~~d~~~R~t~~e~l~h~w~~~~~ 36 (222)
+.|.-||+.+|.+|+||.++|.|||+...+
T Consensus 528 dFL~PmLef~PeKR~tA~~cl~hPwLn~~~ 557 (590)
T KOG1290|consen 528 DFLSPMLEFDPEKRPTAAQCLKHPWLNPVA 557 (590)
T ss_pred HHHHHHHhcCccccccHHHHhcCccccCCC
Confidence 567789999999999999999999995433
No 168
>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I
Probab=93.18 E-value=0.05 Score=45.69 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=28.6
Q ss_pred CchHHHHHHHhhccCCCCCCCh-hhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTF-GERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~-~e~l~h~w~~~~ 35 (222)
+..+++.+.++|.+||.+|+|+ ++++.|||+...
T Consensus 220 ~~~~~~li~~~l~~dP~~R~~~~~~~~~h~~f~~~ 254 (316)
T cd05620 220 TKESKDILEKLFERDPTRRLGVVGNIRGHPFFKTI 254 (316)
T ss_pred CHHHHHHHHHHccCCHHHcCCChHHHHcCCCcCCC
Confidence 4567888999999999999998 477889999553
No 169
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=93.17 E-value=0.061 Score=46.37 Aligned_cols=33 Identities=6% Similarity=-0.135 Sum_probs=29.2
Q ss_pred CchHHHHHHHhhccCCCC--CCChhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSS--SLTFGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~--R~t~~e~l~h~w~~~ 34 (222)
++.+++.+.++|..+|.+ |+|+.+++.|||+..
T Consensus 275 s~~~~~li~~~L~~~p~r~~R~s~~ell~h~~~~~ 309 (370)
T cd05596 275 SKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKN 309 (370)
T ss_pred CHHHHHHHHHHccChhhccCCCCHHHHhcCcccCC
Confidence 567888999999988887 999999999999954
No 170
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=93.14 E-value=0.047 Score=45.98 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=29.6
Q ss_pred CchHHHHHHHhhccCCCCCC-----Chhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~-----t~~e~l~h~w~~~~ 35 (222)
++.+.+.+.++|.+||.+|+ ++.++++|||+...
T Consensus 220 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~ 258 (325)
T cd05594 220 SPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGI 258 (325)
T ss_pred CHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcCCCcCCC
Confidence 45678888899999999998 89999999999543
No 171
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=93.13 E-value=0.075 Score=44.32 Aligned_cols=32 Identities=3% Similarity=-0.257 Sum_probs=28.2
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
.+.++.+.++|..+|.+|+|+.+++.|||+..
T Consensus 241 ~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~ 272 (308)
T cd06634 241 EYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR 272 (308)
T ss_pred HHHHHHHHHHhhCCcccCCCHHHHhhCccccc
Confidence 45677888999999999999999999999843
No 172
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=93.12 E-value=0.24 Score=41.64 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=55.2
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHHhcCccc
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLKNMTLPY 203 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~~~~~~ 203 (222)
.|.+||.+++|.++..|-...+.- -.|+..+. .+++..|+.++.+.||.+.-.+|..+++. .+|+.-
T Consensus 264 ~f~LFde~~tg~~D~re~v~~lav---lc~p~~t~----~iiq~afk~f~v~eDg~~ge~~ls~ilq~------~lgv~~ 330 (412)
T KOG4666|consen 264 TFMLFDEGTTGNGDYRETVKTLAV---LCGPPVTP----VIIQYAFKRFSVAEDGISGEHILSLILQV------VLGVEV 330 (412)
T ss_pred hhheecCCCCCcccHHHHhhhhee---eeCCCCcH----HHHHHHHHhcccccccccchHHHHHHHHH------hcCcce
Confidence 889999999999998877666532 24555554 47888899999999999999888777753 344444
Q ss_pred hhhhhhhcCc
Q 027496 204 LTDITTIFPS 213 (222)
Q Consensus 204 ~~~~~~~~~~ 213 (222)
| +++..||+
T Consensus 331 l-~v~~lf~~ 339 (412)
T KOG4666|consen 331 L-RVPVLFPS 339 (412)
T ss_pred e-eccccchh
Confidence 4 44455554
No 173
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=93.11 E-value=0.055 Score=45.73 Aligned_cols=34 Identities=9% Similarity=0.013 Sum_probs=28.9
Q ss_pred CchHHHHHHHhhccCCCCCCCh------hhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTF------GERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~------~e~l~h~w~~~~ 35 (222)
+..+++.+.++|.+||..|+|+ .+++.|||+...
T Consensus 229 ~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~~ 268 (329)
T cd05618 229 SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV 268 (329)
T ss_pred CHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCCC
Confidence 4567888999999999999994 799999999543
No 174
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=93.09 E-value=0.058 Score=45.49 Aligned_cols=34 Identities=9% Similarity=-0.056 Sum_probs=29.6
Q ss_pred CchHHHHHHHhhccCCCCCC----Chhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSL----TFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~----t~~e~l~h~w~~~~ 35 (222)
++++.+.+.++|.+||..|+ ++.+++.|||+...
T Consensus 222 ~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~ 259 (330)
T cd05586 222 SDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADI 259 (330)
T ss_pred CHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcCccccCC
Confidence 56778889999999999998 68999999999543
No 175
>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in
Probab=93.09 E-value=0.055 Score=45.47 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=29.2
Q ss_pred CchHHHHHHHhhccCCCCCCChh-hhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFG-ERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~-e~l~h~w~~~~ 35 (222)
+..+++.+.++|.++|.+|+++. +++.|||+...
T Consensus 220 ~~~~~~li~~~l~~~P~~R~~~~~~l~~h~~~~~~ 254 (316)
T cd05619 220 TREAKDILVKLFVREPERRLGVKGDIRQHPFFREI 254 (316)
T ss_pred CHHHHHHHHHHhccCHhhcCCChHHHHcCcccCCC
Confidence 45678899999999999999997 88999999553
No 176
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=93.07 E-value=0.096 Score=43.58 Aligned_cols=32 Identities=3% Similarity=-0.207 Sum_probs=28.0
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
.+.++.+.++|..+|.+|+|+.+++.|||+..
T Consensus 241 ~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~ 272 (307)
T cd06607 241 DYFRNFVDSCLQKIPQDRPSSEELLKHRFVLR 272 (307)
T ss_pred HHHHHHHHHHhcCChhhCcCHHHHhcChhhcc
Confidence 35577888999999999999999999999943
No 177
>PLN00181 protein SPA1-RELATED; Provisional
Probab=93.06 E-value=0.12 Score=49.36 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=27.1
Q ss_pred hHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 4 SANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 4 ~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
.+...+.++|.++|..|+|+.++++|||+..
T Consensus 240 ~~~~~~~~~L~~~P~~Rps~~eil~h~~~~~ 270 (793)
T PLN00181 240 KEASFCLWLLHPEPSCRPSMSELLQSEFINE 270 (793)
T ss_pred HHHHHHHHhCCCChhhCcChHHHhhchhhhh
Confidence 4566778899999999999999999999943
No 178
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=93.03 E-value=0.056 Score=46.05 Aligned_cols=34 Identities=9% Similarity=-0.021 Sum_probs=30.0
Q ss_pred CchHHHHHHHhhccCCCCCC-----Chhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~-----t~~e~l~h~w~~~~ 35 (222)
++.+++.+.++|.+||.+|+ |+.++++|||+...
T Consensus 252 ~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~ 290 (340)
T PTZ00426 252 DNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNI 290 (340)
T ss_pred CHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence 56788999999999999996 89999999999543
No 179
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=92.92 E-value=0.13 Score=46.43 Aligned_cols=34 Identities=9% Similarity=0.016 Sum_probs=29.2
Q ss_pred HHHHHHHhhccCCCCCCChhhhhhcccccchhhH
Q 027496 5 ANRSFLRAFDYDGSSSLTFGERICAACIPLIAII 38 (222)
Q Consensus 5 ~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~~~~ 38 (222)
+.+.+..+|.+||.+|+|+.++|+|||+...++.
T Consensus 603 li~~mK~CL~rdPkkR~si~eLLqhpFl~~~~i~ 636 (677)
T KOG0596|consen 603 LIDVMKCCLARDPKKRWSIPELLQHPFLQIQPIP 636 (677)
T ss_pred HHHHHHHHHhcCcccCCCcHHHhcCccccccccc
Confidence 6778889999999999999999999999554443
No 180
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=92.82 E-value=0.073 Score=44.93 Aligned_cols=34 Identities=3% Similarity=-0.097 Sum_probs=30.1
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~ 35 (222)
+..+.+.+.++|..+|.+|+|+.+++.|||+...
T Consensus 230 s~~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~ 263 (333)
T cd05600 230 SDEAWDLITKLINDPSRRFGSLEDIKNHPFFKEV 263 (333)
T ss_pred CHHHHHHHHHHhhChhhhcCCHHHHHhCcccCCC
Confidence 5677888899999999999999999999999654
No 181
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=92.79 E-value=0.074 Score=45.03 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=28.2
Q ss_pred CchHHHHHHHhhccCCCCCCC-hhhhhhcccccchh
Q 027496 2 DSSANRSFLRAFDYDGSSSLT-FGERICAACIPLIA 36 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t-~~e~l~h~w~~~~~ 36 (222)
++.+.+.+.++|. ||..|++ +.++++|||+....
T Consensus 258 ~~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~~ 292 (350)
T cd05573 258 SPEAIDLICRLLC-DPEDRLGSFEEIKSHPFFKGID 292 (350)
T ss_pred CHHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCCC
Confidence 4567777888886 9999999 99999999995543
No 182
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=92.70 E-value=0.063 Score=45.16 Aligned_cols=34 Identities=12% Similarity=-0.073 Sum_probs=29.5
Q ss_pred CchHHHHHHHhhccCCCCCCCh-----hhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTF-----GERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~-----~e~l~h~w~~~~ 35 (222)
++++++.+.++|.++|..|++. .++++|||+...
T Consensus 225 ~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~~ 263 (324)
T cd05587 225 SKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRI 263 (324)
T ss_pred CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence 5678889999999999999987 789999999543
No 183
>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in
Probab=92.62 E-value=0.075 Score=44.74 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=30.2
Q ss_pred CchHHHHHHHhhccCCCCCC-----Chhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~-----t~~e~l~h~w~~~~ 35 (222)
+..+.+.+.++|.++|.+|+ ++.+++.|||+...
T Consensus 224 ~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~ 262 (323)
T cd05584 224 TPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHV 262 (323)
T ss_pred CHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCCC
Confidence 46778899999999999999 89999999999554
No 184
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=92.46 E-value=0.057 Score=45.48 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=30.5
Q ss_pred CchHHHHHHHhhccCCCCCC-----Chhhhhhcccccchh
Q 027496 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLIA 36 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~-----t~~e~l~h~w~~~~~ 36 (222)
++.+.+.+.++|.+||.+|+ ++.++++|||+....
T Consensus 219 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~~~ 258 (323)
T cd05595 219 SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSIN 258 (323)
T ss_pred CHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcCCCcCCCC
Confidence 56778889999999999999 899999999995543
No 185
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=92.40 E-value=0.079 Score=44.40 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=29.0
Q ss_pred CchHHHHHHHhhccCCCCCCC-----hhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLT-----FGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t-----~~e~l~h~w~~~~ 35 (222)
++.+.+.+.++|++||..|+| +.+++.|||+...
T Consensus 222 ~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~ 260 (318)
T cd05582 222 SPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTI 260 (318)
T ss_pred CHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCC
Confidence 456788999999999999999 5669999999554
No 186
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=92.18 E-value=0.085 Score=44.37 Aligned_cols=34 Identities=18% Similarity=0.013 Sum_probs=29.7
Q ss_pred CchHHHHHHHhhccCCCCCCCh----hhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTF----GERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~----~e~l~h~w~~~~ 35 (222)
++++.+.+.++|.+||.+|+++ .+++.|||+...
T Consensus 220 ~~~~~~li~~~l~~~p~~R~~~~~~~~~il~~~~~~~~ 257 (323)
T cd05575 220 SVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSI 257 (323)
T ss_pred CHHHHHHHHHHhhcCHHhCCCCCCCHHHHHcCCCcCCC
Confidence 5678899999999999999998 589999999553
No 187
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=92.05 E-value=0.08 Score=44.69 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=29.4
Q ss_pred CchHHHHHHHhhccCCCCCCCh------hhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTF------GERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~------~e~l~h~w~~~~ 35 (222)
+..+.+.+.++|.+||..|+++ .+++.|||+...
T Consensus 227 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~~ 266 (327)
T cd05617 227 SVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSI 266 (327)
T ss_pred CHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCCC
Confidence 5678899999999999999985 599999999554
No 188
>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N. Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved
Probab=91.79 E-value=0.11 Score=43.74 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=29.4
Q ss_pred CchHHHHHHHhhccCCCCCC-----Chhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~-----t~~e~l~h~w~~~~ 35 (222)
+....+.+.++|.+||.+|+ ++.++++|||+...
T Consensus 225 ~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~~ 263 (324)
T cd05589 225 SREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDI 263 (324)
T ss_pred CHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCCC
Confidence 45678899999999999999 68999999999543
No 189
>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481
Probab=91.53 E-value=0.1 Score=48.90 Aligned_cols=33 Identities=9% Similarity=-0.024 Sum_probs=28.9
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhcccccch
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPLI 35 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~ 35 (222)
..+.+.+.++|..||..|+|+.++++|||+...
T Consensus 608 ~~~~~~l~~lL~~dP~~R~ta~e~l~h~~~~~~ 640 (669)
T cd05610 608 VNAQNAIEILLTMDPTKRAGLKELKQHPLFHGV 640 (669)
T ss_pred HHHHHHHHHHcccChhHCcCHHHHHhCHhhcCC
Confidence 456778889999999999999999999999544
No 190
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.52 E-value=0.12 Score=45.35 Aligned_cols=29 Identities=17% Similarity=-0.014 Sum_probs=25.2
Q ss_pred hHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 4 SANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 4 ~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
|-...+-.+|++||++|+||.+.|+|+|+
T Consensus 268 sf~e~i~~CL~kDP~kRptAskLlkh~FF 296 (516)
T KOG0582|consen 268 SFREMIALCLVKDPSKRPTASKLLKHAFF 296 (516)
T ss_pred HHHHHHHHHhhcCcccCCCHHHHhccHHH
Confidence 34455668999999999999999999999
No 191
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=91.49 E-value=0.12 Score=43.45 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=28.7
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
++-+.+.+.++|..||.+|+|.+++|.||++
T Consensus 257 s~~~ld~~k~cL~~dP~~R~sc~qll~H~yF 287 (396)
T KOG0593|consen 257 SNVLLDLLKKCLKMDPDDRLSCEQLLHHPYF 287 (396)
T ss_pred hHHHHHHHHHHhcCCccccccHHHHhcChHH
Confidence 4567899999999999999999999999999
No 192
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=91.16 E-value=0.13 Score=42.39 Aligned_cols=35 Identities=11% Similarity=0.026 Sum_probs=29.9
Q ss_pred CchHHHHHHHhhccCCCCCC-----Chhhhhhcccccchh
Q 027496 2 DSSANRSFLRAFDYDGSSSL-----TFGERICAACIPLIA 36 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~-----t~~e~l~h~w~~~~~ 36 (222)
++..+..+.++|..+|.+|+ ++.++++|||+....
T Consensus 222 ~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~ 261 (290)
T cd05580 222 SPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGID 261 (290)
T ss_pred CHHHHHHHHHHccCCHHHccCcccCCHHHHHcCcccccCC
Confidence 45667888999999999999 999999999995543
No 193
>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica
Probab=90.92 E-value=0.15 Score=43.62 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=27.6
Q ss_pred CchHHHHHHHhhccCCCCCCC---hhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLT---FGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t---~~e~l~h~w~~~~ 35 (222)
++.+++.+.++|. +|..|++ +.+++.|||+...
T Consensus 267 s~~~~~li~~ll~-~p~~R~~~~~~~~ll~h~~~~~~ 302 (364)
T cd05599 267 SPEAKDLIKRLCC-EAERRLGNNGVNEIKSHPFFKGV 302 (364)
T ss_pred CHHHHHHHHHHcc-CHhhcCCCCCHHHHhcCCCcCCC
Confidence 5677888888885 9999998 9999999999543
No 194
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.73 E-value=0.54 Score=42.56 Aligned_cols=62 Identities=18% Similarity=0.333 Sum_probs=51.8
Q ss_pred HHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 121 RVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 121 ~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
+..-|..+|.|+.|+++.++...+|+ ..+.+++++.+++++ +++|.+-.|.++..||.+++.
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk----~~~~~~d~~~~~~~l----~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLK----SENVGWDEDRLHEEL----QEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHH----HhcCCCCHHHHHHHH----HHHHHhhcceeeHHHHHHHHH
Confidence 34588899999999999999999985 334578888777777 688888899999999998885
No 195
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=90.64 E-value=1.4 Score=40.39 Aligned_cols=113 Identities=17% Similarity=0.202 Sum_probs=67.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhhccC-CCC--CC---------cccHHHHHHHHhcC-CCCCchhhhHHHhhhhhc
Q 027496 63 GDLARLAAESRFSVNELEALSELYKNLSCS-IIK--DG---------LIHKEELQVALFQA-PYGENLFLDRVVAFRLYD 129 (222)
Q Consensus 63 ~~l~~l~~~~~~t~~ei~~l~~~F~~~d~~-~~~--~G---------~I~~~ef~~~l~~~-~~~~~~~~~~~~~F~~~D 129 (222)
..++.+.+.+.+|.+++..++..|...-.. .-+ .- +|++..|..++... +.. ....-...+|+.+|
T Consensus 487 t~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~-~s~~~~~rlF~l~D 565 (671)
T KOG4347|consen 487 TILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWA-VSLIFLERLFRLLD 565 (671)
T ss_pred HHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchh-HHHHHHHHHHHhcc
Confidence 345566666778999999999999753211 000 11 23333333333221 111 00011234889999
Q ss_pred cCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHH
Q 027496 130 LRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEW 185 (222)
Q Consensus 130 ~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF 185 (222)
.+++|.|++.++...|..+. .. +..+-+..+|+.+|++++ ....++-
T Consensus 566 ~s~~g~Ltf~~lv~gL~~l~-------~~-~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 566 DSMTGLLTFKDLVSGLSILK-------AG-DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred cCCcceeEHHHHHHHHHHHH-------hh-hHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999999999886442 11 233446678889999888 7666654
No 196
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=90.24 E-value=0.18 Score=43.01 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=30.4
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
+++.+.+.+-++|..+|..|+|+.|+++||++.
T Consensus 278 ~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFd 310 (364)
T KOG0658|consen 278 LPPDALDLLSKLLQYSPSKRLSALEALAHPFFD 310 (364)
T ss_pred CCHHHHHHHHHHhccChhhcCCHHHHhcchhhH
Confidence 467899999999999999999999999999883
No 197
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.19 E-value=0.71 Score=43.23 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHH
Q 027496 77 NELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAA 147 (222)
Q Consensus 77 ~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~ 147 (222)
..-.++.+.|+.+|.. .+|+++=.+=+.+|.+....... .-.++.+-|+|+||.++.+||.-++.-
T Consensus 192 ~~klKY~QlFNa~Dkt--rsG~Lsg~qaR~aL~qS~Lpq~~---LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKT--RSGYLSGQQARSALGQSGLPQNQ---LAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhhHHHHHhhhcccc--cccccccHHHHHHHHhcCCchhh---HhhheeeeccCCCCcccHHHHHHHHHH
Confidence 3345678899999997 99999999999998875544332 223567889999999999999987653
No 198
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=90.17 E-value=6.4 Score=36.99 Aligned_cols=139 Identities=14% Similarity=0.207 Sum_probs=86.3
Q ss_pred HHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHH
Q 027496 43 ITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRV 122 (222)
Q Consensus 43 ~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~ 122 (222)
..+..+|...+.++++.++..+...+.+.....-.+ .+++..|...+.. ++|++...++........... +..
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~-~~~~~~f~e~~~~--~~~k~~~~~~~~~~~~~~~rp----ev~ 208 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSE-SKARRLFKESDNS--QTGKLEEEEFVKFRKELTKRP----EVY 208 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhH-HHHHHHHHHHHhh--ccceehHHHHHHHHHhhccCc----hHH
Confidence 334445666677777788888877777765443222 3344555555544 788888888877765432222 334
Q ss_pred HhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHh
Q 027496 123 VAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 123 ~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~ 191 (222)
++|..+-.+ .++++.+++.+++... .-....+.+..+++++..=..-..-..+.++.+.|...+..
T Consensus 209 ~~f~~~s~~-~~~ls~~~L~~Fl~~~--q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 209 FLFVQYSHG-KEYLSTDDLLRFLEEE--QGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHHHhCC-CCccCHHHHHHHHHHh--cccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 456665433 8899999999998654 11134666777777753311112234567999999988854
No 199
>PLN02952 phosphoinositide phospholipase C
Probab=90.06 E-value=3.7 Score=37.95 Aligned_cols=93 Identities=9% Similarity=0.100 Sum_probs=61.3
Q ss_pred CCCcccHHHHHHHHhcCCCCC-chhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHc
Q 027496 95 KDGLIHKEELQVALFQAPYGE-NLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEI-KLPDDLLEAIIDKTFADA 172 (222)
Q Consensus 95 ~~G~I~~~ef~~~l~~~~~~~-~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~-~~~~~~~~~~~~~~f~~~ 172 (222)
+.|.+++++|........... ....+...+|..|-. +.+.++.++|..+|.. ..|. ..+.+.+..++..++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~---~Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVL---HQDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHH---hCCCcCCCHHHHHHHHHHHHhhc
Confidence 578999999976655432111 122345568888854 4468999999999963 3343 366677777776655443
Q ss_pred CC---CCCCCccHHHHHHHHHh
Q 027496 173 DI---DKDGRINKEEWKEFAVR 191 (222)
Q Consensus 173 D~---~~dG~Is~~eF~~~~~~ 191 (222)
.. .+.+.++++.|...+..
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccccCcCHHHHHHHHcC
Confidence 21 23345899999999964
No 200
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=90.04 E-value=0.17 Score=42.53 Aligned_cols=34 Identities=12% Similarity=-0.028 Sum_probs=28.8
Q ss_pred CchHHHHHHHhhccCCCCCCChh----hhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFG----ERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~----e~l~h~w~~~~ 35 (222)
+.++.+.+.++|.++|..|+++. +++.|||+...
T Consensus 220 ~~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~ 257 (325)
T cd05604 220 SLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESL 257 (325)
T ss_pred CHHHHHHHHHHhccCHHhcCCCCCCHHHHhcCCCcCCC
Confidence 45678899999999999999874 88999999543
No 201
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=90.03 E-value=0.21 Score=41.47 Aligned_cols=37 Identities=11% Similarity=-0.133 Sum_probs=30.6
Q ss_pred chHHHHHHHhhccCCCCCCC---hhhhhhcccccchhhHH
Q 027496 3 SSANRSFLRAFDYDGSSSLT---FGERICAACIPLIAIIE 39 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t---~~e~l~h~w~~~~~~~~ 39 (222)
....+.+.++|.++|..|+| +.+++.|||+.......
T Consensus 244 ~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~~~~~~~~~~ 283 (305)
T cd05609 244 ADAQDLISRLLRQNPLERLGTGGAFEVKQHRFFLGLDWNG 283 (305)
T ss_pred HHHHHHHHHHhccChhhccCccCHHHHHhCccccCCCHHH
Confidence 44678889999999999998 68889999997665544
No 202
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=90.03 E-value=0.21 Score=41.80 Aligned_cols=30 Identities=7% Similarity=-0.161 Sum_probs=27.1
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
+..++.+-++|..+|.+|+|+.++++|+|+
T Consensus 251 ~~l~~li~~~l~~~p~~Rpt~~~il~~~~~ 280 (317)
T cd06635 251 DYFRNFVDSCLQKIPQDRPTSEELLKHMFV 280 (317)
T ss_pred HHHHHHHHHHccCCcccCcCHHHHHhChhh
Confidence 356778889999999999999999999998
No 203
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.88 E-value=0.28 Score=42.94 Aligned_cols=32 Identities=9% Similarity=-0.071 Sum_probs=27.4
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
...++.+--+|+++|..|+||.++|+|++|..
T Consensus 237 ~~~kEFV~~CL~k~P~~RpsA~~LLKh~FIk~ 268 (467)
T KOG0201|consen 237 PPFKEFVEACLDKNPEFRPSAKELLKHKFIKR 268 (467)
T ss_pred HHHHHHHHHHhhcCcccCcCHHHHhhhHHHHh
Confidence 34567777999999999999999999999943
No 204
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=89.72 E-value=0.27 Score=44.22 Aligned_cols=31 Identities=16% Similarity=0.042 Sum_probs=28.6
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
.+-|.+.+.|+|.+||+.|+|+.++-.||++
T Consensus 311 p~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF 341 (604)
T KOG0592|consen 311 PEDARDLIKKLLVRDPSDRLTSQQIKAHPFF 341 (604)
T ss_pred CHHHHHHHHHHHccCccccccHHHHhhCccc
Confidence 3568899999999999999999999999999
No 205
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=89.41 E-value=0.21 Score=41.95 Aligned_cols=34 Identities=12% Similarity=-0.063 Sum_probs=29.2
Q ss_pred CchHHHHHHHhhccCCCCCCCh-----hhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTF-----GERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~-----~e~l~h~w~~~~ 35 (222)
++.+.+.+.++|.++|.+|+++ .+++.|||+...
T Consensus 225 s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~~ 263 (323)
T cd05616 225 SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYI 263 (323)
T ss_pred CHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCCC
Confidence 5678889999999999999985 788999999543
No 206
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=89.16 E-value=0.29 Score=42.21 Aligned_cols=33 Identities=6% Similarity=-0.168 Sum_probs=26.8
Q ss_pred CchHHHHHHHhhccCCCC--CCChhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSS--SLTFGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~--R~t~~e~l~h~w~~~ 34 (222)
+.++++.+.++|..++.+ |+|+.++++|||+..
T Consensus 275 s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~ 309 (370)
T cd05621 275 SKHAKNLICAFLTDREVRLGRNGVEEIKQHPFFKN 309 (370)
T ss_pred CHHHHHHHHHHccCchhccCCCCHHHHhcCcccCC
Confidence 567888899999755543 899999999999954
No 207
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=88.97 E-value=0.32 Score=41.94 Aligned_cols=34 Identities=3% Similarity=-0.126 Sum_probs=26.9
Q ss_pred CchHHHHHHHhhcc--CCCCCCChhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDY--DGSSSLTFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~--d~~~R~t~~e~l~h~w~~~~ 35 (222)
++.+++.+.+++.. ++.+|+|+.+++.|||+...
T Consensus 276 s~~~~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~~ 311 (381)
T cd05626 276 SPEAVDLITKLCCSAEERLGRNGADDIKAHPFFSEV 311 (381)
T ss_pred CHHHHHHHHHHccCcccccCCCCHHHHhcCcccCCC
Confidence 56788888887754 44559999999999999543
No 208
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=88.92 E-value=0.25 Score=42.53 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=28.3
Q ss_pred CchHHHHHHHhhccCCCCCCC---hhhhhhcccccchhh
Q 027496 2 DSSANRSFLRAFDYDGSSSLT---FGERICAACIPLIAI 37 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t---~~e~l~h~w~~~~~~ 37 (222)
++++++.+.+++ .+|..|++ +.+++.|||+.....
T Consensus 276 s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~~~ 313 (382)
T cd05625 276 SPEASDLIIKLC-RGPEDRLGKNGADEIKAHPFFKTIDF 313 (382)
T ss_pred CHHHHHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCCcCh
Confidence 567888888865 69999998 999999999965443
No 209
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=88.66 E-value=1.2 Score=34.26 Aligned_cols=36 Identities=8% Similarity=0.025 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 162 EAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 162 ~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
-+.++.+|+.++..+.+.+|+.|..+|+..+-+...
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D 130 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNAND 130 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCC
Confidence 355777789999888889999999999987655333
No 210
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=88.65 E-value=0.26 Score=41.32 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=28.0
Q ss_pred CchHHHHHHHhhccCCCCCCChh-hhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFG-ERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~-e~l~h~w~~~~ 35 (222)
+..+.+.+.++|+++|..|+++. +++.|||+...
T Consensus 220 ~~~~~~ll~~~l~~~P~~R~~~~~~l~~h~~~~~~ 254 (316)
T cd05592 220 SKEAKDCLSKLFERDPTKRLGVDGDIRQHPFFRGI 254 (316)
T ss_pred CHHHHHHHHHHccCCHHHcCCChHHHHcCcccCCC
Confidence 34677888999999999999875 77799999543
No 211
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.19 E-value=3 Score=30.44 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=52.4
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc--------CCCCCchh-------hh--HHHhh
Q 027496 63 GDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQ--------APYGENLF-------LD--RVVAF 125 (222)
Q Consensus 63 ~~l~~l~~~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~--------~~~~~~~~-------~~--~~~~F 125 (222)
-.++.+++.+.+..-++..+.+.|....-+...+..++..++..++.. .|...+.. .+ .-|+.
T Consensus 24 ~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll 103 (127)
T PF09068_consen 24 MKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLL 103 (127)
T ss_dssp HHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHH
Confidence 456778888888777788888888877665223678999998877632 22212111 11 24689
Q ss_pred hhhccCCCCCccHHHHHHHH
Q 027496 126 RLYDLRQTGYIEREEVKQMV 145 (222)
Q Consensus 126 ~~~D~d~~G~Is~~El~~~l 145 (222)
..||.+++|.|+.-+++.++
T Consensus 104 ~vyD~~rtG~I~vls~KvaL 123 (127)
T PF09068_consen 104 NVYDSQRTGKIRVLSFKVAL 123 (127)
T ss_dssp HHH-TT--SEEEHHHHHHHH
T ss_pred HHhCCCCCCeeehhHHHHHH
Confidence 99999999999999998876
No 212
>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a
Probab=87.97 E-value=0.34 Score=40.76 Aligned_cols=34 Identities=15% Similarity=-0.066 Sum_probs=28.6
Q ss_pred CchHHHHHHHhhccCCCCCCCh-----hhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTF-----GERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~-----~e~l~h~w~~~~ 35 (222)
++.+.+.+.++|.++|.+|++. .+++.|||+...
T Consensus 225 ~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~ 263 (323)
T cd05615 225 SKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRI 263 (323)
T ss_pred CHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccCCC
Confidence 5667888999999999999984 678999999543
No 213
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=87.95 E-value=0.31 Score=43.92 Aligned_cols=32 Identities=3% Similarity=-0.063 Sum_probs=28.6
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
++...+.+.++|..+|..|+|+.+++.|||+.
T Consensus 270 ~~~l~~li~~~L~~dP~~RPs~~ell~~p~~~ 301 (496)
T PTZ00283 270 SPEMQEIVTALLSSDPKRRPSSSKLLNMPICK 301 (496)
T ss_pred CHHHHHHHHHHcccChhhCcCHHHHHhCHHHH
Confidence 45677888999999999999999999999974
No 214
>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of
Probab=87.91 E-value=0.34 Score=41.67 Aligned_cols=32 Identities=9% Similarity=-0.082 Sum_probs=25.6
Q ss_pred CchHHHHHHHhhccCCCCC---CChhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSSS---LTFGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R---~t~~e~l~h~w~~~ 34 (222)
+..+++.+.++|. +|..| +|+.+++.|||+..
T Consensus 276 s~~~~dli~~lL~-~~~~r~~r~~~~~~l~hp~~~~ 310 (377)
T cd05629 276 SVEAEDLIRRLIT-NAENRLGRGGAHEIKSHPFFRG 310 (377)
T ss_pred CHHHHHHHHHHhc-CHhhcCCCCCHHHHhcCCCcCC
Confidence 4567888889997 66655 59999999999953
No 215
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.76 E-value=1.8 Score=40.46 Aligned_cols=94 Identities=22% Similarity=0.325 Sum_probs=67.4
Q ss_pred CCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Q 027496 96 DGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADID 175 (222)
Q Consensus 96 ~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~ 175 (222)
+| |+++|+. . ...+........|.++|. ++|.++.+++..++..+..............+....++...|.+
T Consensus 2 ~~-~~~~~~~--~----~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK--I----TDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc--c----cCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 56 8999997 1 111111223457888887 99999999999998766444444444556667777788999999
Q ss_pred CCCCccHHHHHHHHHhCchHHH
Q 027496 176 KDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 176 ~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
..|.+.++++..++...+...-
T Consensus 74 ~~~y~~~~~~~~ll~~~~~~~~ 95 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIPTLLF 95 (646)
T ss_pred ccceeeecchhHHHHhchHHHH
Confidence 9999999999888887765433
No 216
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=87.70 E-value=0.39 Score=41.03 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=26.0
Q ss_pred CchHHHHHHHhhccCCCCCCC---hhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLT---FGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t---~~e~l~h~w~~~~ 35 (222)
++.+++.+.+++ .+|..|++ +.+++.|||+...
T Consensus 264 s~~~~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~~ 299 (360)
T cd05627 264 SEKAKDLILRFC-TDSENRIGSNGVEEIKSHPFFEGV 299 (360)
T ss_pred CHHHHHHHHHhc-cChhhcCCCCCHHHHhcCCCCCCC
Confidence 456777887866 69999985 7899999999543
No 217
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=87.43 E-value=0.36 Score=41.43 Aligned_cols=35 Identities=17% Similarity=0.092 Sum_probs=27.3
Q ss_pred CchHHHHHHHhhccCCCCCC---Chhhhhhcccccchhh
Q 027496 2 DSSANRSFLRAFDYDGSSSL---TFGERICAACIPLIAI 37 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~---t~~e~l~h~w~~~~~~ 37 (222)
++.+++.+.+++ .+|..|+ |+.++++|||+.....
T Consensus 272 s~~~~~li~~l~-~~p~~R~~~~t~~ell~h~~~~~~~~ 309 (376)
T cd05598 272 SREASDLILRLC-CGAEDRLGKNGADEIKAHPFFKGIDF 309 (376)
T ss_pred CHHHHHHHHHHh-cCHhhcCCCCCHHHHhCCCCcCCCCH
Confidence 345667777755 7999999 9999999999965443
No 218
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=87.29 E-value=0.33 Score=40.82 Aligned_cols=34 Identities=18% Similarity=0.048 Sum_probs=29.4
Q ss_pred CchHHHHHHHhhccCCCCCCChh----hhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFG----ERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~----e~l~h~w~~~~ 35 (222)
++++.+.+.++|.++|..|+++. ++++|+|+...
T Consensus 220 ~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~~~~~~~~ 257 (325)
T cd05602 220 TNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPI 257 (325)
T ss_pred CHHHHHHHHHHcccCHHHCCCCCCCHHHHhcCcccCCC
Confidence 56788999999999999999987 78899998543
No 219
>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,
Probab=86.80 E-value=0.55 Score=39.65 Aligned_cols=33 Identities=6% Similarity=-0.138 Sum_probs=25.4
Q ss_pred CchHHHHHHHhhccCCC--CCCChhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGS--SSLTFGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~--~R~t~~e~l~h~w~~~ 34 (222)
+..+++.+.++|..++. .|+++.+++.|||+..
T Consensus 237 ~~~~~~li~~ll~~~~~r~~r~~~~~~l~hp~~~~ 271 (331)
T cd05597 237 SEEAKDLIRRLICSPETRLGRNGLQDFKDHPFFEG 271 (331)
T ss_pred CHHHHHHHHHHccCcccccCCCCHHHHhcCCCCCC
Confidence 45677778888865444 4889999999999954
No 220
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.73 E-value=1.3 Score=39.46 Aligned_cols=59 Identities=27% Similarity=0.383 Sum_probs=47.3
Q ss_pred HHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 122 VVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 122 ~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
+.-|+-.-.|-.|+|+-.--+.++. ..++.-+++..|+ +..|.+.||.+++.||+..+.
T Consensus 234 vnQFrtvQpDp~gfisGsaAknFFt------KSklpi~ELshIW----eLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 234 VNQFRTVQPDPHGFISGSAAKNFFT------KSKLPIEELSHIW----ELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HhhhhcccCCcccccccHHHHhhhh------hccCchHHHHHHH----hhcccCccccccHHHHHhhHh
Confidence 3478888899999999877777652 3367777766666 699999999999999999874
No 221
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=85.92 E-value=0.43 Score=42.68 Aligned_cols=32 Identities=6% Similarity=-0.037 Sum_probs=28.1
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
+....+.+.++|.++|..|+|+.+++.|+|+.
T Consensus 296 s~~~~~li~~~L~~dP~~Rps~~~~l~~~~~~ 327 (478)
T PTZ00267 296 SSGMKALLDPLLSKNPALRPTTQQLLHTEFLK 327 (478)
T ss_pred CHHHHHHHHHHhccChhhCcCHHHHHhCHHHH
Confidence 34567888899999999999999999999883
No 222
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=85.55 E-value=0.72 Score=45.44 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=28.4
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
+..++.+..||..||++||||.|+|.+.|+|
T Consensus 845 ~~e~slI~~Ll~hdP~kRPtA~eLL~s~llp 875 (1351)
T KOG1035|consen 845 PEEASLIRWLLSHDPSKRPTATELLNSELLP 875 (1351)
T ss_pred hHHHHHHHHHhcCCCccCCCHHHHhhccCCC
Confidence 4567889999999999999999999999997
No 223
>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]
Probab=85.23 E-value=0.46 Score=43.30 Aligned_cols=31 Identities=16% Similarity=0.041 Sum_probs=25.8
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
+++-.-.+--+|.+||.+|+||.+.++||+.
T Consensus 224 S~~f~nfl~gLL~kdP~~RltW~~Ll~HpF~ 254 (808)
T KOG0597|consen 224 SSSFVNFLQGLLIKDPAQRLTWTDLLGHPFW 254 (808)
T ss_pred cHHHHHHHHHHhhcChhhcccHHHHhcChHH
Confidence 3444455568999999999999999999998
No 224
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=84.44 E-value=11 Score=28.95 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=37.6
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIK--LPDDLLEAIIDKTFADADIDKDGRINKEEWKEFA 189 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~--~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~ 189 (222)
+|..|+..+.+.+|..|+.++++.- +..... .....++-.+ ++..+ .+.||.++.++-..+.
T Consensus 101 iF~kya~~~~d~LT~~E~~~m~~~n-r~~~D~~GW~a~~~EW~~--~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 101 IFSKYAKTGPDALTLRELWRMLKGN-RNANDPFGWFAAFFEWGA--LYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred HHHHhCCCCCCCcCHHHHHHHHHhc-cccCCcchhhhhhhHHHH--HHHHH-cCcCCcEeHHHHhhhc
Confidence 9999999999999999999998531 000001 1111122222 22222 4678999888776554
No 225
>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw
Probab=84.39 E-value=0.74 Score=38.80 Aligned_cols=34 Identities=9% Similarity=-0.114 Sum_probs=26.2
Q ss_pred CchHHHHHHHhhccCC--CCCCChhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDG--SSSLTFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~--~~R~t~~e~l~h~w~~~~ 35 (222)
+..+++.+.++|..++ .+|+|+.++++|||+...
T Consensus 237 s~~~~~li~~ll~~~~~r~~r~~~~~~~~h~~f~~~ 272 (332)
T cd05623 237 SEDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTGI 272 (332)
T ss_pred CHHHHHHHHHHccChhhhcCCCCHHHHhCCCCcCCC
Confidence 4567888888886544 447899999999999644
No 226
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=83.97 E-value=0.73 Score=38.87 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=41.9
Q ss_pred HHHHHHHhhccCCCCCCcccHHHHH---HHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHH
Q 027496 81 ALSELYKNLSCSIIKDGLIHKEELQ---VALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMV 145 (222)
Q Consensus 81 ~l~~~F~~~d~~~~~~G~I~~~ef~---~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l 145 (222)
.++=.|..+|.| .++-|+..|+. ..+....... .=-...|+.+|.|+|..||..|++..|
T Consensus 334 vv~w~F~qLdkN--~nn~i~rrEwKpFK~~l~k~s~~r---kC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 334 VVHWYFNQLDKN--SNNDIERREWKPFKRVLLKKSKPR---KCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred eeeeeeeeeccc--ccCccchhhcchHHHHHHhhccHH---HHhhhcchhcccCCCceecHHHHhhhh
Confidence 334468899987 89999998854 4443221110 001337899999999999999999987
No 227
>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus
Probab=83.75 E-value=0.93 Score=38.77 Aligned_cols=34 Identities=12% Similarity=-0.017 Sum_probs=25.5
Q ss_pred CchHHHHHHHhhccCCC---CCCChhhhhhcccccchh
Q 027496 2 DSSANRSFLRAFDYDGS---SSLTFGERICAACIPLIA 36 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~---~R~t~~e~l~h~w~~~~~ 36 (222)
++.+++.+.+++. +|. +|+++.|++.|||+....
T Consensus 264 s~~~~~li~~l~~-~~~~r~~r~~~~ei~~hp~f~~~~ 300 (363)
T cd05628 264 SEKAKDLILRFCC-EWEHRIGAPGVEEIKTNPFFEGVD 300 (363)
T ss_pred CHHHHHHHHHHcC-ChhhcCCCCCHHHHhCCCCCCCCC
Confidence 5677888888775 444 567999999999995543
No 228
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=83.32 E-value=0.72 Score=38.62 Aligned_cols=34 Identities=15% Similarity=0.016 Sum_probs=28.2
Q ss_pred chHHHHHHHhhccCCCCCCChh----hhhhcccccchh
Q 027496 3 SSANRSFLRAFDYDGSSSLTFG----ERICAACIPLIA 36 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~----e~l~h~w~~~~~ 36 (222)
..+.+.+.++|.++|..|+++. ++++|+|+....
T Consensus 221 ~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~~~~~~~~ 258 (321)
T cd05603 221 VAACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSPIN 258 (321)
T ss_pred HHHHHHHHHHccCCHhhcCCCCCCHHHHhCCCCcCCCC
Confidence 4577889999999999999864 889999995433
No 229
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=82.96 E-value=0.64 Score=45.45 Aligned_cols=31 Identities=6% Similarity=-0.046 Sum_probs=28.3
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
+....+.+.++|..+|..|+|+.++|.|||+
T Consensus 268 S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~i 298 (1021)
T PTZ00266 268 SKELNILIKNLLNLSAKERPSALQCLGYQII 298 (1021)
T ss_pred CHHHHHHHHHHhcCChhHCcCHHHHhccHHH
Confidence 3467788899999999999999999999999
No 230
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=82.90 E-value=3.2 Score=27.51 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=37.6
Q ss_pred HHHHhhccCCCCCCcccHHHHHHHHhcCCCCCc-hhhhHHHhhhhhccC----CCCCccHHHHHHHH
Q 027496 84 ELYKNLSCSIIKDGLIHKEELQVALFQAPYGEN-LFLDRVVAFRLYDLR----QTGYIEREEVKQMV 145 (222)
Q Consensus 84 ~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~-~~~~~~~~F~~~D~d----~~G~Is~~El~~~l 145 (222)
..|..+.. +.+.++.++|...|........ .......+++.|.++ ..|.+|.++|...|
T Consensus 4 ~if~~ys~---~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 4 EIFRKYSS---DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHCT---TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHhC---CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 34555433 5789999999999965322211 112233355666443 47999999999998
No 231
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=82.45 E-value=0.63 Score=39.79 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=32.4
Q ss_pred CCchHHHHHHHhhccCCCCCC----ChhhhhhcccccchhhHHH
Q 027496 1 MDSSANRSFLRAFDYDGSSSL----TFGERICAACIPLIAIIEA 40 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~----t~~e~l~h~w~~~~~~~~~ 40 (222)
+++.|.+.+.++|.+||++|+ .+.++-.|||+........
T Consensus 249 ls~~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~inW~~l 292 (357)
T KOG0598|consen 249 LSEEARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKGINWEKL 292 (357)
T ss_pred CCHHHHHHHHHHhccCHHHhcCCCCChHHhhcCcccccCCHHHH
Confidence 467899999999999999997 6778889999965554333
No 232
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=81.54 E-value=1.2 Score=28.92 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=21.8
Q ss_pred hhHHHhhhhhccCCCCCccHHHHHHHH
Q 027496 119 LDRVVAFRLYDLRQTGYIEREEVKQMV 145 (222)
Q Consensus 119 ~~~~~~F~~~D~d~~G~Is~~El~~~l 145 (222)
++.+.+|+.+ .++.++||.+||++.|
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 3445699999 7899999999999975
No 233
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=81.25 E-value=6.6 Score=35.98 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHH
Q 027496 163 AIIDKTFADADIDKDGRINKEEWKEFAVRNPSLL 196 (222)
Q Consensus 163 ~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~ 196 (222)
+.+..+|..+|.|+||.++-+|+..+....|...
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p 348 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP 348 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC
Confidence 5567789999999999999999999988777655
No 234
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=81.20 E-value=0.55 Score=42.50 Aligned_cols=34 Identities=3% Similarity=-0.006 Sum_probs=31.2
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
++..|.+.+-++|++.=++|+|.+..|.|||+..
T Consensus 791 is~~AidlIn~LLqVkm~kRysvdk~lsh~Wlq~ 824 (888)
T KOG4236|consen 791 ISPEAIDLINNLLQVKMRKRYSVDKSLSHPWLQD 824 (888)
T ss_pred cCHHHHHHHHHHHHHHHHHhcchHhhccchhhhc
Confidence 4678999999999999999999999999999954
No 235
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=79.82 E-value=7.4 Score=37.46 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=67.5
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHH----HHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCC
Q 027496 39 EAVVITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNE----LEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYG 114 (222)
Q Consensus 39 ~~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~e----i~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~ 114 (222)
..++..+...|.+......+..+++++...+..++.+.++ ++.+++.....|++ ..|.+++.+|...|..-...
T Consensus 743 Q~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l--~~~qv~~~e~~ddl~R~~e~ 820 (890)
T KOG0035|consen 743 QYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPL--IQGQVQLLEFEDDLEREYED 820 (890)
T ss_pred HHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcc--cccceeHHHHHhHhhhhhhh
Confidence 3445555555666665556678888888877777775444 56666666776665 56889999988877553222
Q ss_pred CchhhhHHHhhhhhccCCCCCccHHHHHH
Q 027496 115 ENLFLDRVVAFRLYDLRQTGYIEREEVKQ 143 (222)
Q Consensus 115 ~~~~~~~~~~F~~~D~d~~G~Is~~El~~ 143 (222)
.+.....+.+|+.+-++.. +|..+||..
T Consensus 821 l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 821 LDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 2333445667887766655 788888876
No 236
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=79.60 E-value=2.3 Score=36.27 Aligned_cols=57 Identities=21% Similarity=0.207 Sum_probs=43.2
Q ss_pred HHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHH
Q 027496 82 LSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMV 145 (222)
Q Consensus 82 l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l 145 (222)
+-=+|+++|.| .||.++..|+..+... ..+.- ..-.|...|...+|.|+..|+...+
T Consensus 252 ~gWMFnklD~N--~Dl~Ld~sEl~~I~ld--knE~C---ikpFfnsCD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 252 LGWMFNKLDTN--YDLLLDQSELRAIELD--KNEAC---IKPFFNSCDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hhhhhhccccc--cccccCHHHhhhhhcc--CchhH---HHHHHhhhcccccCccccchhhhhh
Confidence 34469999997 9999999999876532 11111 1227889999999999999999876
No 237
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=79.04 E-value=1.7 Score=39.89 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=44.8
Q ss_pred HHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHH
Q 027496 82 LSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEV 141 (222)
Q Consensus 82 l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El 141 (222)
+.+.|..+|.+ ++|.|++.++..++.....+. ..+....+|++||.+++ ....+|.
T Consensus 557 ~~rlF~l~D~s--~~g~Ltf~~lv~gL~~l~~~~-~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDS--MTGLLTFKDLVSGLSILKAGD-ALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccC--CcceeEHHHHHHHHHHHHhhh-HHHHHHHHHhhccCCcc-ccccccc
Confidence 45678888886 999999999999998754443 22445679999999999 8888888
No 238
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=78.45 E-value=1.6 Score=37.59 Aligned_cols=34 Identities=6% Similarity=-0.203 Sum_probs=26.6
Q ss_pred CchHHHHHHHhhccCCC--CCCChhhhhhcccccch
Q 027496 2 DSSANRSFLRAFDYDGS--SSLTFGERICAACIPLI 35 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~--~R~t~~e~l~h~w~~~~ 35 (222)
++++++.+.++|..++. +|+++.+++.|||+...
T Consensus 275 s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~~~~~~ 310 (371)
T cd05622 275 SKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKND 310 (371)
T ss_pred CHHHHHHHHHHcCChhhhcCCCCHHHHhcCcccCCC
Confidence 56788888899974443 38899999999999553
No 239
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=77.27 E-value=10 Score=28.34 Aligned_cols=69 Identities=16% Similarity=0.350 Sum_probs=44.5
Q ss_pred CCCccHHHHHHHHHHHHH--------HhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHHhcCccch
Q 027496 133 TGYIEREEVKQMVAAILM--------ESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLKNMTLPYL 204 (222)
Q Consensus 133 ~G~Is~~El~~~l~~~~~--------~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~~~~~~~ 204 (222)
+|.|+...|...|+.-+. .....++.++++.+++.+.+.+..++ ++=++|...+.+-|.+...+-.+++
T Consensus 97 n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~---~dtE~Ye~vwkKmPaY~~nil~~~l 173 (175)
T PF04876_consen 97 NGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAES---SDTEHYEKVWKKMPAYFSNILQPYL 173 (175)
T ss_pred ccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccC---CchHHHHHHHHHhhHHHHHHHHHHh
Confidence 455666666555542110 12235778888888888877776544 4457888889999988877655554
No 240
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=77.21 E-value=1.8 Score=39.56 Aligned_cols=33 Identities=6% Similarity=-0.046 Sum_probs=29.5
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
|+.+-.+.|.++|..+|++|.++++.+.|.|+.
T Consensus 278 ms~dce~lLrk~lvl~Pskr~~~dqim~~~W~n 310 (596)
T KOG0586|consen 278 MSCDCEDLLRKFLVLNPSKRGPCDQIMKDRWRN 310 (596)
T ss_pred eechhHHHHHHhhccCccccCCHHHhhhhcccc
Confidence 456677889999999999999999999999993
No 241
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=77.15 E-value=1.4 Score=39.72 Aligned_cols=32 Identities=16% Similarity=0.065 Sum_probs=28.2
Q ss_pred CCchHHHHHHHhhccCCCCCCC---hhhhhhccccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLT---FGERICAACIP 33 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t---~~e~l~h~w~~ 33 (222)
++..|++.+-|+|+ ||.+|+- +.|+-+|||+.
T Consensus 415 ~s~eA~DLI~rll~-d~~~RLG~~G~~EIK~HPfF~ 449 (550)
T KOG0605|consen 415 LSDEAKDLITRLLC-DPENRLGSKGAEEIKKHPFFK 449 (550)
T ss_pred ccHHHHHHHHHHhc-CHHHhcCcccHHHHhcCCccc
Confidence 35789999999999 9999996 78989999993
No 242
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=76.96 E-value=6.1 Score=37.99 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=52.9
Q ss_pred HhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 123 VAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPD-DLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 123 ~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~-~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
-.|+.+|....|..+.+++...| ..+|....+ ++...-+.++....|.+.-|++++.+|...|.+.
T Consensus 751 Ale~~~~~~d~~aa~~e~~~~~L----mslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 751 ALENEQDKIDGGAASPEELLRCL----MSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHhHHHHhhcccCCHHHHHHHH----HhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 38999999999999999999987 667776665 4555555566677788888999999999998653
No 243
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=76.75 E-value=4.8 Score=36.65 Aligned_cols=29 Identities=7% Similarity=0.081 Sum_probs=26.6
Q ss_pred hHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 4 SANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 4 ~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
.-.+.+-+||.+||.+|-|.+++..|+|+
T Consensus 245 eCrdLI~sMLvRdPkkRAslEeI~s~~Wl 273 (864)
T KOG4717|consen 245 ECRDLIQSMLVRDPKKRASLEEIVSTSWL 273 (864)
T ss_pred HHHHHHHHHHhcCchhhccHHHHhccccc
Confidence 34678889999999999999999999999
No 244
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=76.73 E-value=7.4 Score=32.79 Aligned_cols=71 Identities=21% Similarity=0.287 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhhccC------------CCCCCcccHHHHHHHHhc----C--CCCC-chhhh--------HHHhhhh
Q 027496 75 SVNELEALSELYKNLSCS------------IIKDGLIHKEELQVALFQ----A--PYGE-NLFLD--------RVVAFRL 127 (222)
Q Consensus 75 t~~ei~~l~~~F~~~d~~------------~~~~G~I~~~ef~~~l~~----~--~~~~-~~~~~--------~~~~F~~ 127 (222)
|+.+++.++..-+.+|+| +|+||.++-.|+...+.. . +.+. ....+ +.-+.+.
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~ 304 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQ 304 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence 566677776655555554 569999999998776643 1 2221 11111 1127788
Q ss_pred hccCCCCCccHHHHHHHH
Q 027496 128 YDLRQTGYIEREEVKQMV 145 (222)
Q Consensus 128 ~D~d~~G~Is~~El~~~l 145 (222)
.|.|.+..||.+||...-
T Consensus 305 vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 305 VDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred cccchhhhhhHHHHHhhh
Confidence 999999999999998763
No 245
>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.
Probab=75.54 E-value=2.2 Score=35.94 Aligned_cols=33 Identities=9% Similarity=-0.130 Sum_probs=26.1
Q ss_pred CchHHHHHHHhhccCCCC--CCChhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSS--SLTFGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~--R~t~~e~l~h~w~~~ 34 (222)
+..+++.+.++|..++.+ |.++.++++|||+..
T Consensus 237 ~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~~f~~ 271 (331)
T cd05624 237 SEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEG 271 (331)
T ss_pred CHHHHHHHHHHccCchhhcCCCCHHHHhcCCCcCC
Confidence 456788888998866544 679999999999954
No 246
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=71.28 E-value=7.2 Score=18.96 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=10.7
Q ss_pred ccCCCCCccHHHHHHH
Q 027496 129 DLRQTGYIEREEVKQM 144 (222)
Q Consensus 129 D~d~~G~Is~~El~~~ 144 (222)
|.|++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5677888877776654
No 247
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=70.62 E-value=15 Score=22.10 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=30.4
Q ss_pred HHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 027496 42 VITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALSELY 86 (222)
Q Consensus 42 ~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~ei~~l~~~F 86 (222)
...|...|.... ..+..++..+...++++..+|..++..=
T Consensus 12 ~~~Le~~f~~~~-----~P~~~~~~~la~~~~l~~~qV~~WF~nr 51 (59)
T cd00086 12 LEELEKEFEKNP-----YPSREEREELAKELGLTERQVKIWFQNR 51 (59)
T ss_pred HHHHHHHHHhCC-----CCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344555566533 6788999999999999999999887643
No 248
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=70.61 E-value=6.2 Score=21.41 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=16.4
Q ss_pred CCCccHHHHHHHHHhCchHHHh
Q 027496 177 DGRINKEEWKEFAVRNPSLLKN 198 (222)
Q Consensus 177 dG~Is~~eF~~~~~~~~~~~~~ 198 (222)
.|+|++++++.+..+-..+...
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ 23 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYES 23 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHH
Confidence 5789999999998775555443
No 249
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=70.40 E-value=41 Score=31.90 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHH-------
Q 027496 78 ELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILM------- 150 (222)
Q Consensus 78 ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~------- 150 (222)
.-.-+...|...|++ ++|.+++.+...++......-.. .-....|+..|..++|.+..+++..+...+..
T Consensus 134 ~~~wi~~~~~~ad~~--~~~~~~~~~~~~~~~~~n~~l~~-~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~ 210 (746)
T KOG0169|consen 134 REHWIHSIFQEADKN--KNGHMSFDEVLDLLKQLNVQLSE-SKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFL 210 (746)
T ss_pred HHHHHHHHHHHHccc--cccccchhhHHHHHHHHHHhhhH-HHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHH
Confidence 345567788888886 99999999988887653221111 11233667778889999999998887643210
Q ss_pred -----HhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCc
Q 027496 151 -----ESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNP 193 (222)
Q Consensus 151 -----~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~ 193 (222)
..+..++.+++...+. .. .+.+.++.+++.+++....
T Consensus 211 f~~~s~~~~~ls~~~L~~Fl~----~~--q~e~~~~~~~ae~ii~~~e 252 (746)
T KOG0169|consen 211 FVQYSHGKEYLSTDDLLRFLE----EE--QGEDGATLDEAEEIIERYE 252 (746)
T ss_pred HHHHhCCCCccCHHHHHHHHH----Hh--cccccccHHHHHHHHHHhh
Confidence 0123344444444442 22 3344466666666665443
No 250
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=68.04 E-value=3.7 Score=38.15 Aligned_cols=39 Identities=10% Similarity=-0.030 Sum_probs=31.7
Q ss_pred CCchHHHHHHHhhccCCCCCCCh-----hhhhhcccccchhhHH
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTF-----GERICAACIPLIAIIE 39 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~-----~e~l~h~w~~~~~~~~ 39 (222)
|+-.|+..+.++|.++|.+|+-+ .++..||++..+.-+.
T Consensus 591 ls~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i~w~~ 634 (694)
T KOG0694|consen 591 LSKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSIDWDD 634 (694)
T ss_pred ccHHHHHHHHHHhccCcccccCCCCCCchhhhhCCccccCCHHH
Confidence 45678999999999999999986 5778899996655433
No 251
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=67.67 E-value=19 Score=26.20 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=42.2
Q ss_pred hhhhhccC--CCCCccHHHHHHHHHHHHHH----hcCCCC------HHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 124 AFRLYDLR--QTGYIEREEVKQMVAAILME----SEIKLP------DDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 124 ~F~~~D~d--~~G~Is~~El~~~l~~~~~~----~g~~~~------~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
+|+....+ ++..|+..++..++..++.. .+...+ +..++-.+.-++..+|+++.|.|+.-.|+-.+.
T Consensus 46 ~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 46 AFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 44444332 34679999999999998832 222122 245566677778899999999999999887663
No 252
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=66.32 E-value=16 Score=27.55 Aligned_cols=58 Identities=12% Similarity=0.173 Sum_probs=33.8
Q ss_pred hccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 128 YDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 128 ~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
|-..+...++-.-|..+|+.. .-.+..++... ++.+|..+-..+...|+|++|..+|.
T Consensus 11 fG~~~~~~m~~~~F~Kl~kD~-~i~d~k~t~td----vDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 11 FGKKNGTEMDSKNFAKLCKDC-GIIDKKLTSTD----VDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp SSTSTSSEEEHHHHHHHHHHT-SS--SSS-HHH----HHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred hcCCccccccHHHHHHHHHHc-CCCCCCCchHH----HHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 344455567777888877543 11223355544 45556676555566799999988885
No 253
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=65.62 E-value=4.4 Score=31.88 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=42.5
Q ss_pred HHhhhhhcc-CCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHH
Q 027496 122 VVAFRLYDL-RQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFA 189 (222)
Q Consensus 122 ~~~F~~~D~-d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~ 189 (222)
+|-|-.+|. -.||++|..|+.-+- .+-++- +.-+..+|...|.|+||.|+.+||-..+
T Consensus 190 ~wqf~qld~~p~d~~~sh~el~pl~-------ap~ipm---e~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 190 HWQFGQLDQHPIDGYLSHTELAPLR-------APLIPM---EHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeeeccccCCCcccccccccccccc-------CCcccH---HhhchhhhhcccCCCCCceeHHHhhccc
Confidence 457777776 458999999987541 222333 3456777899999999999999997654
No 254
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=64.65 E-value=13 Score=22.41 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=28.8
Q ss_pred HHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q 027496 43 ITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALSEL 85 (222)
Q Consensus 43 ~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~ei~~l~~~ 85 (222)
..|...|.... ..+..+...+...++++..+|..++..
T Consensus 13 ~~L~~~f~~~~-----~p~~~~~~~la~~l~l~~~~V~~WF~n 50 (57)
T PF00046_consen 13 KVLEEYFQENP-----YPSKEEREELAKELGLTERQVKNWFQN 50 (57)
T ss_dssp HHHHHHHHHSS-----SCHHHHHHHHHHHHTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhc-----cccccccccccccccccccccccCHHH
Confidence 44555566533 678888999999999999999888753
No 255
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=64.45 E-value=24 Score=20.96 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=29.6
Q ss_pred HHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q 027496 41 VVITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALSEL 85 (222)
Q Consensus 41 ~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~ei~~l~~~ 85 (222)
.+..|...|.... ..+..++..+...++++..+|..++..
T Consensus 11 ~~~~L~~~f~~~~-----~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (56)
T smart00389 11 QLEELEKEFQKNP-----YPSREEREELAAKLGLSERQVKVWFQN 50 (56)
T ss_pred HHHHHHHHHHhCC-----CCCHHHHHHHHHHHCcCHHHHHHhHHH
Confidence 3344555565543 568889999999999999999888653
No 256
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=64.45 E-value=27 Score=24.27 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhc---cCCCCCccHHHHHHHHH
Q 027496 79 LEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYD---LRQTGYIEREEVKQMVA 146 (222)
Q Consensus 79 i~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D---~d~~G~Is~~El~~~l~ 146 (222)
-..+.+.|+++.. +|.+....|..+++.. .+..|...+ |..+- .-..+.|+.+||.++-.
T Consensus 29 W~~VE~RFd~La~----dG~L~rs~Fg~CIGM~--dSkeFA~eL--FdALaRrr~i~~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 29 WKEVEKRFDKLAK----DGLLPRSDFGECIGMK--DSKEFAGEL--FDALARRRGIKGDSITKDELKEFWE 91 (100)
T ss_dssp HHHHHHHHHHH-B----TTBEEGGGHHHHHT----S-HHHHHHH--HHHHHHHTT--SSEE-HHHHHHHHH
T ss_pred HHHHHHHHHHhCc----CCcccHHHHHHhcCCc--ccHHHHHHH--HHHHHHhcCCccCCcCHHHHHHHHH
Confidence 4566788999886 6999999999998753 333333322 22221 11246788888888753
No 257
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.69 E-value=4.3 Score=34.81 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=29.8
Q ss_pred CCchHHHHHHHhhccCCCCCCC-----hhhhhhcccccch
Q 027496 1 MDSSANRSFLRAFDYDGSSSLT-----FGERICAACIPLI 35 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t-----~~e~l~h~w~~~~ 35 (222)
+++.|+-.+--+|.+||.+|+- +.|+..|+++...
T Consensus 391 ls~eAktLLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v 430 (516)
T KOG0690|consen 391 LSPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASV 430 (516)
T ss_pred CCHHHHHHHHHHhhcChHhhcCCCchhHHHHHhhhhhccC
Confidence 5789999999999999999996 6688889888443
No 258
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=63.26 E-value=4.5 Score=38.22 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=29.0
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
+..|+-.+.|++..||..|++|.+.|..|++
T Consensus 805 saeak~FilrcFepd~~~R~sA~~LL~DpFl 835 (1226)
T KOG4279|consen 805 SAEAKNFILRCFEPDPCDRPSAKDLLQDPFL 835 (1226)
T ss_pred HHHHHHHHHHHcCCCcccCccHHHhccCccc
Confidence 4578889999999999999999999999999
No 259
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=63.17 E-value=3.4 Score=34.82 Aligned_cols=35 Identities=9% Similarity=0.029 Sum_probs=28.6
Q ss_pred CchHHHHHHHhhccCCCCCCC-----hhhhhhcccccchh
Q 027496 2 DSSANRSFLRAFDYDGSSSLT-----FGERICAACIPLIA 36 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t-----~~e~l~h~w~~~~~ 36 (222)
++.|++.+.++|++|-++|+. ..++..|||+....
T Consensus 265 s~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v~ 304 (355)
T KOG0616|consen 265 SSDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGVD 304 (355)
T ss_pred CHHHHHHHHHHHhhhhHhhhcCcCCCccccccCccccccc
Confidence 678899999999999999954 55788999995433
No 260
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=62.29 E-value=6.6 Score=32.88 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=27.0
Q ss_pred hHHHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 4 SANRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 4 ~~~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
.|...+-++|+.||.+|++..+++.|++.
T Consensus 318 eav~~~~~~l~~d~dkris~~~A~~~~~~ 346 (449)
T KOG0664|consen 318 EAVDLLQKLLHFDPDKRISVEEALQHRYL 346 (449)
T ss_pred HHHHHHHHHhCCCCcccccHhhhcccccc
Confidence 57888999999999999999999999887
No 261
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=61.17 E-value=6.5 Score=33.00 Aligned_cols=27 Identities=11% Similarity=-0.009 Sum_probs=23.4
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICA 29 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h 29 (222)
+...+.+.+++..+|.+|+|+.+++.+
T Consensus 263 ~~l~~li~~cl~~~p~~Rps~~ell~~ 289 (334)
T cd05100 263 HELYMIMRECWHAVPSQRPTFKQLVED 289 (334)
T ss_pred HHHHHHHHHHcccChhhCcCHHHHHHH
Confidence 456778889999999999999998875
No 262
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=61.04 E-value=20 Score=32.88 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 73 ~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
.++++++.....+|..+|.+ +.|.++.+....+|.....+- .........+..|.+-+|++...|+.+++..+
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~--k~~~~~i~~v~~vlk~~~~~~-d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDAD--KKAYQAIADVLKVLKSENVGW-DEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred ccCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 57999999999999999996 899999999999987543111 11112335566777779999999999987644
No 263
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=59.86 E-value=11 Score=26.08 Aligned_cols=64 Identities=19% Similarity=0.400 Sum_probs=39.8
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHH---HHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIID---KTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~---~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
-|...|... ...+.+++..++. ..|. + +.+++. ..|+..+.+....+|-+|+++++.++|.+++
T Consensus 25 ~~~~idi~~-~~~~~~~l~~~~~----~~~~--~---~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Lik 91 (105)
T cd02977 25 EYEFIDYLK-EPPTKEELKELLA----KLGL--G---VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIK 91 (105)
T ss_pred CcEEEeecc-CCCCHHHHHHHHH----hcCC--C---HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeee
Confidence 345556553 4578888888873 2331 1 223333 3445555443456899999999999998754
No 264
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=58.95 E-value=22 Score=21.44 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCch
Q 027496 138 REEVKQMVAAILMESEIKLPDDL---LEAIIDKTFADADIDKDGRINKEEWKEFAVRNPS 194 (222)
Q Consensus 138 ~~El~~~l~~~~~~~g~~~~~~~---~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~ 194 (222)
.++|..+..-+....|..++... ++..+...++.. |.-+|.+|...+..+|.
T Consensus 2 d~~f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~-----~~~~~~~y~~~L~~d~~ 56 (57)
T PF03705_consen 2 DAEFERFRELIYRRTGIDLSEYKRSLLERRLARRMRAL-----GLPSFAEYYELLRSDPD 56 (57)
T ss_dssp HHHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHH-----T---HHHHHHHHHH-T-
T ss_pred HHHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHhCCC
Confidence 45666666666677888777653 444444444443 44589999999987763
No 265
>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]
Probab=58.14 E-value=7.2 Score=35.93 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=28.7
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
|+.++..+-++|.. .+.|+|+.|+|.||++..
T Consensus 270 dPevr~fIekCl~~-~~~R~sa~eLL~d~Ff~~ 301 (632)
T KOG0584|consen 270 DPEVREFIEKCLAT-KSERLSAKELLKDPFFDE 301 (632)
T ss_pred CHHHHHHHHHHhcC-chhccCHHHHhhChhhcc
Confidence 67888999999988 999999999999999943
No 266
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=57.42 E-value=10 Score=27.09 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 156 LPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 156 ~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
+++++.+.++ .++-.|..|.|.|.||+.-..
T Consensus 4 LtDeQFdrLW----~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLW----NEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHH----TTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhh----hhCcCCccCCEeHHHHHHHcc
Confidence 6777766666 799999999999999988764
No 267
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.10 E-value=5.4 Score=38.60 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=47.0
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
+|...|.+++|+|+..+....+. . ..++...+..++ ...|..++|.+++++|.-.+...
T Consensus 288 if~q~d~~~dG~I~s~~~~~~f~----~--~gl~~~~l~~~w----~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 288 IFSQVDKDNDGSISSNEARNIFL----P--FGLSKPRLAHVW----LLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred HHHhccccCCCcccccccccccc----c--CCCChhhhhhhh----hhcchhccCcccccccchhhhhh
Confidence 78999999999999999998762 2 346666555555 69999999999999988776544
No 268
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=56.49 E-value=17 Score=27.01 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHhhcCCCHHHHHHHHHHHHh---hccCCCCCCcccHHHHHHHHhcC
Q 027496 58 CRFDVGDLARLAAESRFSVNELEALSELYKN---LSCSIIKDGLIHKEELQVALFQA 111 (222)
Q Consensus 58 ~~l~~~~l~~l~~~~~~t~~ei~~l~~~F~~---~d~~~~~~G~I~~~ef~~~l~~~ 111 (222)
+.+++.++..+++....+...++.+.+.|.. +..- +..+.|+++.|+..|..+
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~-~~~~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKY-NPEEPIDYEGFKLFMKTY 61 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGG-EETTEE-HHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-CCCCCcCHHHHHHHHHHH
Confidence 4789999999988877777788888888852 1110 245689999998887654
No 269
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=56.11 E-value=41 Score=23.69 Aligned_cols=61 Identities=18% Similarity=0.309 Sum_probs=35.4
Q ss_pred hhhccCCCCCccHHHHHHHHHHHH------HHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 126 RLYDLRQTGYIEREEVKQMVAAIL------MESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 126 ~~~D~d~~G~Is~~El~~~l~~~~------~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
++||...+-|||.+++.+++..=- ...|..++. .++..++-+....+...++-.=...+++
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~----~iL~QII~E~E~~g~~~lp~~~L~qlIr 76 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTR----SILLQIIAEEESGGEPVLSTDFLTQIIR 76 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHH----HHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 579999999999999999873100 012333333 3344443455555666666554444444
No 270
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=53.87 E-value=9.7 Score=31.96 Aligned_cols=27 Identities=7% Similarity=0.047 Sum_probs=24.1
Q ss_pred HHHHHHhhccCCCCCCChhhhhhcccc
Q 027496 6 NRSFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 6 ~~~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
...+..+|.+|++.|+...++|+||++
T Consensus 326 ~~fv~~CL~kd~r~RP~Y~~Ll~h~Fi 352 (391)
T KOG0983|consen 326 QSFVKDCLTKDHRKRPKYNKLLEHPFI 352 (391)
T ss_pred HHHHHHHhhcCcccCcchHHHhcCcce
Confidence 345668999999999999999999998
No 271
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=52.64 E-value=51 Score=22.92 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=36.5
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
-|..+-+ +|++..+.|-+.+ |.+-+.+-..++++.+=+.-... ...|+.+|....+.
T Consensus 35 RFd~La~--dG~L~rs~Fg~CI-------GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~ 91 (100)
T PF08414_consen 35 RFDKLAK--DGLLPRSDFGECI-------GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWE 91 (100)
T ss_dssp HHHHH-B--TTBEEGGGHHHHH-------T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHH
T ss_pred HHHHhCc--CCcccHHHHHHhc-------CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHH
Confidence 4555554 8999999999987 55556666677776665555554 45699998887764
No 272
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=51.15 E-value=6.1 Score=33.53 Aligned_cols=31 Identities=13% Similarity=-0.155 Sum_probs=27.4
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhccccc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICAACIP 33 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~ 33 (222)
+.-.+.+.++|-+.|..|-||.++++||++.
T Consensus 257 ~~F~DFi~~CLiK~PE~R~TA~~L~~H~Fik 287 (502)
T KOG0574|consen 257 SEFNDFIRSCLIKKPEERKTALRLCEHTFIK 287 (502)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhhhhc
Confidence 4456788899999999999999999999993
No 273
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=50.80 E-value=27 Score=21.55 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=23.0
Q ss_pred HhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q 027496 45 VASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALSEL 85 (222)
Q Consensus 45 l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~ei~~l~~~ 85 (222)
|..+|..+. .+...++..|...+++|.+++..++..
T Consensus 13 L~~Yy~~h~-----~L~E~DL~~L~~kS~ms~qqVr~WFa~ 48 (56)
T PF11569_consen 13 LEDYYLKHK-----QLQEEDLDELCDKSRMSYQQVRDWFAE 48 (56)
T ss_dssp HHHHHHHT---------TTHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHcC-----CccHhhHHHHHHHHCCCHHHHHHHHHH
Confidence 444555554 677789999999999999999887653
No 274
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=50.14 E-value=2.6e+02 Score=27.54 Aligned_cols=65 Identities=9% Similarity=0.213 Sum_probs=49.5
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHH------HHHhcCCCCHHHHHHHHHHHHHHcCCCC----CCCccHHHHHHHHHhC
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAI------LMESEIKLPDDLLEAIIDKTFADADIDK----DGRINKEEWKEFAVRN 192 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~------~~~~g~~~~~~~~~~~~~~~f~~~D~~~----dG~Is~~eF~~~~~~~ 192 (222)
+|+.+-.++.-|+|.++|..+|..- ...+=+..++..+..++ +.+.+|+ +|++|-+-|++.+...
T Consensus 226 iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~li----ekyEp~~~~a~~gqms~dgf~ryl~gd 300 (1189)
T KOG1265|consen 226 IFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLI----EKYEPNSDNAEKGQMSTDGFVRYLMGD 300 (1189)
T ss_pred HHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHH----HHcCCchhhhhccccchhhhHHHhhCC
Confidence 8899988888999999999998531 11122456677777777 5777765 6899999999999763
No 275
>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]
Probab=48.79 E-value=14 Score=32.78 Aligned_cols=30 Identities=13% Similarity=-0.033 Sum_probs=24.3
Q ss_pred chHHH-HHHHhhccCCCCCCChhhhhhcccc
Q 027496 3 SSANR-SFLRAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 3 ~~~~~-~~~~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
|+.++ .+..+|.++|..|+++.++|.+|-+
T Consensus 231 s~el~~lv~~~l~~~P~~RPsa~~LL~~P~l 261 (426)
T KOG0589|consen 231 SSELRSLVKSMLRKNPEHRPSALELLRRPHL 261 (426)
T ss_pred cHHHHHHHHHHhhcCCccCCCHHHHhhChhh
Confidence 44455 4558999999999999999998665
No 276
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=48.27 E-value=15 Score=23.34 Aligned_cols=21 Identities=43% Similarity=0.778 Sum_probs=19.1
Q ss_pred hhhccCCCCCccHHHHHHHHH
Q 027496 126 RLYDLRQTGYIEREEVKQMVA 146 (222)
Q Consensus 126 ~~~D~d~~G~Is~~El~~~l~ 146 (222)
++||...+.||+.+++.++++
T Consensus 10 RLYDT~~s~YiTL~di~~lV~ 30 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVR 30 (64)
T ss_pred ccccCCCceeEeHHHHHHHHH
Confidence 679999999999999999873
No 277
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=47.54 E-value=55 Score=18.95 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhccCCCCCCcccHHHHHHHHhc
Q 027496 79 LEALSELYKNLSCSIIKDGLIHKEELQVALFQ 110 (222)
Q Consensus 79 i~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~ 110 (222)
+..+...|.+++..-+...+++..||...+..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34444555555532123557888888777653
No 278
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.53 E-value=49 Score=23.99 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=37.3
Q ss_pred CCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccH
Q 027496 131 RQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINK 182 (222)
Q Consensus 131 d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~ 182 (222)
+..|.||.+|=.++| .....++.++++...+.+|+.=|+...|..-.
T Consensus 51 ~~~~~iTlqEa~qIL-----nV~~~ln~eei~k~yehLFevNdkskGGSFYL 97 (132)
T KOG3442|consen 51 NSNGKITLQEAQQIL-----NVKEPLNREEIEKRYEHLFEVNDKSKGGSFYL 97 (132)
T ss_pred cccccccHHHHhhHh-----CCCCCCCHHHHHHHHHHHHhccCcccCcceee
Confidence 445779999999987 34457889999999999999999887776433
No 279
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=47.35 E-value=24 Score=24.67 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=38.1
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
.|...|...+ .+|.+|+..+++ ..| + +.+-..=...|+....+....+|-++.+.+|..+|.+++
T Consensus 25 ~~~~~di~~~-p~s~~eL~~~l~----~~g--~--~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~Lik 89 (105)
T cd03035 25 AYTFHDYRKD-GLDAATLERWLA----KVG--W--ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIK 89 (105)
T ss_pred CeEEEecccC-CCCHHHHHHHHH----HhC--h--HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeee
Confidence 3444555444 489999999874 333 1 111111122345554442245788999999999997654
No 280
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=47.30 E-value=88 Score=21.23 Aligned_cols=80 Identities=13% Similarity=0.075 Sum_probs=46.6
Q ss_pred CCCCCHHHHHHHHh---h-cCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhh-HHHhhhhhccC
Q 027496 57 KCRFDVGDLARLAA---E-SRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLD-RVVAFRLYDLR 131 (222)
Q Consensus 57 ~~~l~~~~l~~l~~---~-~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~-~~~~F~~~D~d 131 (222)
+|.++..|...+.. . .+++..+...+...|... .....+..+|...+.... ....-.. ...+|+..-
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~r~~~l~~L~~vA~-- 84 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEAL-----EEEAPDLYEFTSLIKEHF-DYEERLELVEALWEVAY-- 84 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----HHhCCCHHHHHHHHHHhC-CHHHHHHHHHHHHHHHH--
Confidence 45777777765443 3 578999999999999884 334577888877765432 1111000 112333332
Q ss_pred CCCCccHHHHHHH
Q 027496 132 QTGYIEREEVKQM 144 (222)
Q Consensus 132 ~~G~Is~~El~~~ 144 (222)
-||.++..|-.-+
T Consensus 85 ADG~~~~~E~~~l 97 (104)
T cd07313 85 ADGELDEYEEHLI 97 (104)
T ss_pred hcCCCCHHHHHHH
Confidence 3567777665543
No 281
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=47.27 E-value=33 Score=25.06 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=39.9
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
.|...|...+ .++.+|+...++. .|. +.+.+-.--...|+..+.+. ..+|-++.+.++..+|.+++
T Consensus 26 ~~~~~d~~~~-~~s~~eL~~~l~~----~~~--~~~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~Lik 91 (132)
T PRK13344 26 SYKEQNLGKE-PLTKEEILAILTK----TEN--GIESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPRILK 91 (132)
T ss_pred CeEEEECCCC-CCCHHHHHHHHHH----hCC--CHHHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCcccee
Confidence 4555666554 4899999998853 232 12221111122345555433 45888999999999998755
No 282
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=47.03 E-value=48 Score=23.35 Aligned_cols=65 Identities=23% Similarity=0.341 Sum_probs=37.8
Q ss_pred hhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 125 FRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 125 F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
|...|... ...+.+|+..+++ ..|. ..+.+-..=...|+....+. ..+|-+|.+.+|.++|.+++
T Consensus 27 ~~~idi~~-~~~~~~el~~~~~----~~~~--~~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~Lik 91 (115)
T cd03032 27 FEERNLFK-QPLTKEELKEILS----LTEN--GVEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLLR 91 (115)
T ss_pred eEEEecCC-CcchHHHHHHHHH----HhcC--CHHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhhee
Confidence 44455543 3578889888874 2321 22211111122345554433 45789999999999998755
No 283
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=46.32 E-value=35 Score=31.96 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=23.2
Q ss_pred HHHHH-HhhccCCCCCCChhhhhhcccc
Q 027496 6 NRSFL-RAFDYDGSSSLTFGERICAACI 32 (222)
Q Consensus 6 ~~~~~-~~L~~d~~~R~t~~e~l~h~w~ 32 (222)
.+.|. .+|.+-|..|+|..++|.|+|+
T Consensus 254 F~~Fvd~CLqKipqeRptse~ll~H~fv 281 (948)
T KOG0577|consen 254 FRNFVDSCLQKIPQERPTSEELLKHRFV 281 (948)
T ss_pred HHHHHHHHHhhCcccCCcHHHHhhcchh
Confidence 33444 7899999999999999999999
No 284
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=46.05 E-value=15 Score=30.48 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.0
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICA 29 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h 29 (222)
.+....+.+++..+|..|+|+.+++.+
T Consensus 238 ~~~~~li~~cl~~~p~~Rps~~~l~~~ 264 (316)
T cd05108 238 IDVYMIMVKCWMIDADSRPKFRELIIE 264 (316)
T ss_pred HHHHHHHHHHccCChhhCcCHHHHHHH
Confidence 356677889999999999999998864
No 285
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=42.79 E-value=19 Score=29.59 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=22.6
Q ss_pred chHHHHHHHhhccCCCCCCChhhhhhc
Q 027496 3 SSANRSFLRAFDYDGSSSLTFGERICA 29 (222)
Q Consensus 3 ~~~~~~~~~~L~~d~~~R~t~~e~l~h 29 (222)
..+...+.+++..+|.+|+|+.+++..
T Consensus 238 ~~~~~li~~c~~~~p~~Rp~~~~l~~~ 264 (303)
T cd05110 238 IDVYMVMVKCWMIDADSRPKFKELAAE 264 (303)
T ss_pred HHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence 456777889999999999999998763
No 286
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=40.80 E-value=63 Score=22.68 Aligned_cols=63 Identities=13% Similarity=0.267 Sum_probs=38.9
Q ss_pred hhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH---HHHHcCCCCCCCccHHHHHHHHHhCchHHHh
Q 027496 125 FRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDK---TFADADIDKDGRINKEEWKEFAVRNPSLLKN 198 (222)
Q Consensus 125 F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~---~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~ 198 (222)
|...|.-.+ .+|.+|+..+++ ..|.. +.+++.. .++....+. ..+|-++.+.+|..+|.+++-
T Consensus 26 ~~~~di~~~-~~t~~el~~~l~----~~~~~-----~~~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~LikR 91 (112)
T cd03034 26 PEIVEYLKT-PPTAAELRELLA----KLGIS-----PRDLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIER 91 (112)
T ss_pred eEEEecccC-CcCHHHHHHHHH----HcCCC-----HHHHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCcccC
Confidence 334454433 489999999874 33322 2233322 345554443 458999999999999987653
No 287
>PRK12559 transcriptional regulator Spx; Provisional
Probab=40.46 E-value=45 Score=24.34 Aligned_cols=66 Identities=17% Similarity=0.334 Sum_probs=39.8
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
.|...|...+ .++.+|+..+++ ..|. +.+.+-.-=...|+..+.+.+ .+|-++.+.+|.++|.+++
T Consensus 26 ~~~~~di~~~-~~s~~el~~~l~----~~~~--g~~~lin~~~~~~k~l~~~~~-~ls~~e~i~ll~~~P~Lik 91 (131)
T PRK12559 26 DYTEKNIVSN-SMTVDELKSILR----LTEE--GATEIISTRSKTFQDLNINIE-ELSLNEFYKLIIEHPLMLR 91 (131)
T ss_pred CeEEEEeeCC-cCCHHHHHHHHH----HcCC--CHHHHHhcCcHHHHhCCCCcc-cCCHHHHHHHHHhCcceEe
Confidence 3455555544 489999999884 2222 222211111234566655443 4788999999999998755
No 288
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=40.42 E-value=49 Score=21.90 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=13.5
Q ss_pred CCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 027496 132 QTGYIEREEVKQMVAAILMESEIKLPDDLLEAII 165 (222)
Q Consensus 132 ~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~ 165 (222)
..|+||.+|+..+|. ...++.+.+..++
T Consensus 18 ~~G~lT~~eI~~~L~------~~~~~~e~id~i~ 45 (82)
T PF03979_consen 18 KKGYLTYDEINDALP------EDDLDPEQIDEIY 45 (82)
T ss_dssp HHSS-BHHHHHHH-S-------S---HHHHHHHH
T ss_pred hcCcCCHHHHHHHcC------ccCCCHHHHHHHH
Confidence 457777777777761 2335666555555
No 289
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=40.41 E-value=13 Score=29.31 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=33.1
Q ss_pred HHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhH--HHhhhhhccCCCCCccHHHHHHHH
Q 027496 86 YKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDR--VVAFRLYDLRQTGYIEREEVKQMV 145 (222)
Q Consensus 86 F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~--~~~F~~~D~d~~G~Is~~El~~~l 145 (222)
|-.+|+. --||.+|-.|+..+-+.. ...+. .-.|.-.|.|+||+|+.+|+...+
T Consensus 193 f~qld~~-p~d~~~sh~el~pl~ap~-----ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 193 FGQLDQH-PIDGYLSHTELAPLRAPL-----IPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eccccCC-CccccccccccccccCCc-----ccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 4455543 246777777764322110 01111 126788999999999999998765
No 290
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=40.13 E-value=1.6e+02 Score=28.34 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=68.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcC--------CC--CCchhhh--HHHhhhhhcc
Q 027496 63 GDLARLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQA--------PY--GENLFLD--RVVAFRLYDL 130 (222)
Q Consensus 63 ~~l~~l~~~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~--------~~--~~~~~~~--~~~~F~~~D~ 130 (222)
..++.+++.+.+..-.+.-+.++|+.++.. .++...+..+...++... +. .-+.-.+ ..|+...||.
T Consensus 403 mKlr~LQK~l~ldlv~ltl~l~if~~h~l~-~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~ 481 (966)
T KOG4286|consen 403 MKLRRLQKALCLDLLSLSLALDALDQHNLK-QNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDT 481 (966)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHhccc-ccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhccc
Confidence 455666666666666666667777776654 344566666655554211 10 0111122 2468899999
Q ss_pred CCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 131 RQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 131 d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
..+|.|..-+|+-.+-.+ .+.. +++-..++|+..-.++.-.+ ...|-.++.
T Consensus 482 ~R~g~irvls~ki~~i~l---ck~~-----leek~~ylF~~vA~~~sq~~-q~~l~lLL~ 532 (966)
T KOG4286|consen 482 GRTGRIRVLSFKIGIISL---CKAH-----LEDKYRYLFKQVASSTSQCD-QRRLGLLLH 532 (966)
T ss_pred CCCcceEEeeehhhHHHH---hcch-----hHHHHHHHHHHHcCchhhHH-HHHHHHHHH
Confidence 999999999999877433 2222 22334577788754444333 444444443
No 291
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=39.99 E-value=45 Score=18.91 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHH
Q 027496 59 RFDVGDLARLAAESRFSVNELEALSE 84 (222)
Q Consensus 59 ~l~~~~l~~l~~~~~~t~~ei~~l~~ 84 (222)
.-+.++...++..+++|..+|..++.
T Consensus 10 YPs~~ek~~L~~~tgls~~Qi~~WF~ 35 (40)
T PF05920_consen 10 YPSKEEKEELAKQTGLSRKQISNWFI 35 (40)
T ss_dssp S--HHHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45778888999999999999988764
No 292
>PLN02230 phosphoinositide phospholipase C 4
Probab=39.82 E-value=1.7e+02 Score=27.37 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=46.4
Q ss_pred hhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHcC---CCCCCCccHHHHHHHHHh
Q 027496 119 LDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESE-I-KLPDDLLEAIIDKTFADAD---IDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 119 ~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g-~-~~~~~~~~~~~~~~f~~~D---~~~dG~Is~~eF~~~~~~ 191 (222)
.+...+|..|-.++ ++++.++|..+|.. ..+ . ..+.+.++.++..+..... .-+.+.++.+.|...+..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~---~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAE---EGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHH---hCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 45566888885444 89999999999953 232 2 3456667777765544332 123456999999998865
No 293
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.58 E-value=24 Score=30.64 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=38.4
Q ss_pred hHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHH
Q 027496 120 DRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKE 187 (222)
Q Consensus 120 ~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~ 187 (222)
+.+.+|+.+|+.++|+|+-+-++.++..+ ...+++...-.+.. +..|+.+-|.|-..+|..
T Consensus 310 q~rR~f~a~d~~d~nfis~s~~~~vm~~~----N~~vse~a~v~l~~---~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 310 QLRRNFHAYDPEDNNFISCSGLQIVMTAL----NRLVSEPAYVMLMR---QPLDPESLGIILLEDFLG 370 (449)
T ss_pred HHHhhhhccCccCCCeeecHHHHHHHHHh----cccccCHHHHHHhc---CccChhhcceEEeccccc
Confidence 34559999999999999999999988533 33344443323332 345665555555555443
No 294
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=39.43 E-value=75 Score=28.65 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=86.5
Q ss_pred CCHHHHH--HHHhhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCcc
Q 027496 60 FDVGDLA--RLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIE 137 (222)
Q Consensus 60 l~~~~l~--~l~~~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is 137 (222)
-+..++. -+.+.++++..|---|.-.|.--|.+ |==.|+..+++.++........ + + ...-|.||
T Consensus 106 aTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~--gLlLlDLkDLra~l~~v~e~~~---e----~----~~~yG~is 172 (502)
T PF05872_consen 106 ATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDE--GLLLLDLKDLRAMLQYVSENAK---E----L----SAEYGNIS 172 (502)
T ss_pred eeHHhhchHHHHHHhccchHHHHHHHHHHHHhccC--CCccccHHHHHHHHHHHHhhHH---H----H----HHHcCCcc
Confidence 3445554 23344567777777777788876653 4458999999888765421110 1 1 12457899
Q ss_pred HHHHHHHHHHHHH--HhcCC--CCH--HHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHHhcCccchhhhhhhc
Q 027496 138 REEVKQMVAAILM--ESEIK--LPD--DLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLKNMTLPYLTDITTIF 211 (222)
Q Consensus 138 ~~El~~~l~~~~~--~~g~~--~~~--~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (222)
...+-.++++++. ..|.. +.+ =++.+++ ..|.|+.|.|+.-+--+++ ..|.+-..|-++.|.++=.-+
T Consensus 173 ~aS~gaI~R~ll~LE~qG~d~FFGEPaldi~Dl~-----r~~~~GrG~IniL~a~~l~-~~P~LysTFLLwLLsELfe~L 246 (502)
T PF05872_consen 173 SASIGAIQRALLVLEQQGGDQFFGEPALDIEDLM-----RTDADGRGVINILAADKLM-NSPKLYSTFLLWLLSELFEQL 246 (502)
T ss_pred HHHHHHHHHHHHHHHHcchHhhCCCccCCHHHHh-----ccCCCCCEEEEEEEhHhhh-hCcHHHHHHHHHHHHHHHHhC
Confidence 8888888877642 22210 111 1355666 6788999999988877777 488888888888888775555
Q ss_pred C
Q 027496 212 P 212 (222)
Q Consensus 212 ~ 212 (222)
|
T Consensus 247 P 247 (502)
T PF05872_consen 247 P 247 (502)
T ss_pred c
Confidence 5
No 295
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=38.55 E-value=80 Score=22.42 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=42.3
Q ss_pred cHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHHhcCccchhhhhhhcC
Q 027496 137 EREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLKNMTLPYLTDITTIFP 212 (222)
Q Consensus 137 s~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (222)
+......++.+++.-....++.++-+.+. +..+.-.+|.|++..-+.++.. +......+||.+.+.+-|
T Consensus 47 ~~~~~~Nvl~Hi~Gyfk~~ls~~EK~~~~----~~i~~yr~g~i~l~~~l~~L~~---~~~ry~~~YL~~q~yf~P 115 (117)
T PF08349_consen 47 TRGSHINVLQHIFGYFKKKLSSEEKQHFL----DLIEDYREGKIPLSVPLTLLKH---LARRYPDEYLLEQTYFNP 115 (117)
T ss_pred CchhHHHHHHHHHHHHHHhCCHHHHHHHH----HHHHHHHcCCccHHHHHHHHHH---HHHHCCCHHHhhCcCcCC
Confidence 34445556666666666677777766555 3444456788888877776643 334556677765555544
No 296
>PLN02952 phosphoinositide phospholipase C
Probab=38.01 E-value=2.8e+02 Score=25.97 Aligned_cols=83 Identities=4% Similarity=0.001 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHhhcC----CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCc-hhhhHHHhhhhh----
Q 027496 58 CRFDVGDLARLAAESR----FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGEN-LFLDRVVAFRLY---- 128 (222)
Q Consensus 58 ~~l~~~~l~~l~~~~~----~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~-~~~~~~~~F~~~---- 128 (222)
+.++..++..+.+... ..+.||..++..|.. +.+.++.++|...|........ ...+...++..+
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~------~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV------GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC------CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhc
Confidence 4778888866655443 257888888777765 4578999999998865322111 111111122211
Q ss_pred ---ccCCCCCccHHHHHHHHH
Q 027496 129 ---DLRQTGYIEREEVKQMVA 146 (222)
Q Consensus 129 ---D~d~~G~Is~~El~~~l~ 146 (222)
...+.+.++.+.|...|.
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccccccCcCHHHHHHHHc
Confidence 112345689999988873
No 297
>PRK10236 hypothetical protein; Provisional
Probab=37.62 E-value=2.2e+02 Score=23.13 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=20.1
Q ss_pred CchHHHHHHHhhccCCCCCCChhhhhh
Q 027496 2 DSSANRSFLRAFDYDGSSSLTFGERIC 28 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t~~e~l~ 28 (222)
+++....+...|..|+.++....+.++
T Consensus 18 s~edL~~Lv~~Lt~d~dG~~R~te~lt 44 (237)
T PRK10236 18 SEEQLANFARLLTHNEKGKTRLSSVLM 44 (237)
T ss_pred CHHHHHHHHHHHhcCCCCCEeehhhhc
Confidence 456777788888777777777777665
No 298
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.03 E-value=44 Score=29.33 Aligned_cols=45 Identities=36% Similarity=0.572 Sum_probs=28.9
Q ss_pred CCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHH
Q 027496 133 TGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKE 187 (222)
Q Consensus 133 ~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~ 187 (222)
+|+||-..-+.-+ .+.++....+- .+++.+|.|.||.++-+||.-
T Consensus 457 ~gk~sg~~ak~~m------v~sklpnsvlg----kiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 457 NGKLSGRNAKKEM------VKSKLPNSVLG----KIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred CceeccchhHHHH------HhccCchhHHH----hhhhhhcCCcccCcCHHHHHH
Confidence 4556544333322 23455555444 445899999999999999963
No 299
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.17 E-value=23 Score=34.41 Aligned_cols=71 Identities=15% Similarity=0.265 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHHHHHHHHHH
Q 027496 73 RFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREEVKQMVAAI 148 (222)
Q Consensus 73 ~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~ 148 (222)
.++..+...+.+.|...|++ .+|.|+..+....+......... ....+...|.++.|.|++.++.-.+..+
T Consensus 276 ~vsp~d~~~~~~if~q~d~~--~dG~I~s~~~~~~f~~~gl~~~~---l~~~w~l~d~~n~~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKD--NDGSISSNEARNIFLPFGLSKPR---LAHVWLLADTQNTGTLSKDEFALAMHLL 346 (847)
T ss_pred ccChHHHHHHHHHHHhcccc--CCCcccccccccccccCCCChhh---hhhhhhhcchhccCcccccccchhhhhh
Confidence 46788888888999999997 99999999998887654333222 2235688999999999999888776544
No 300
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=35.77 E-value=72 Score=16.86 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhccCCCCCCcccHHHHHHH
Q 027496 78 ELEALSELYKNLSCSIIKDGLIHKEELQVA 107 (222)
Q Consensus 78 ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~ 107 (222)
++..|...+.. |.||-+||...
T Consensus 4 ~L~~L~~l~~~--------G~IseeEy~~~ 25 (31)
T PF09851_consen 4 RLEKLKELYDK--------GEISEEEYEQK 25 (31)
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHH
Confidence 45555555554 88999988654
No 301
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=34.79 E-value=97 Score=22.75 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.2
Q ss_pred CCCccHHHHHHHHHhCchHHHhc
Q 027496 177 DGRINKEEWKEFAVRNPSLLKNM 199 (222)
Q Consensus 177 dG~Is~~eF~~~~~~~~~~~~~~ 199 (222)
+|.||-.||++.+.+.+.+.+.+
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f 64 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRF 64 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHHHH
Confidence 78899999999999998887754
No 302
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=34.74 E-value=84 Score=22.82 Aligned_cols=66 Identities=20% Similarity=0.319 Sum_probs=38.5
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
.|...|... ...+.+|+..+++ ..|. ..+.+-.--...|+....+. -.+|-+|.+.+|..+|.+++
T Consensus 26 ~~~~idi~~-~~~~~~eL~~~l~----~~~~--g~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~p~Lik 91 (131)
T PRK01655 26 PFTERNIFS-SPLTIDEIKQILR----MTED--GTDEIISTRSKVFQKLNVDV-ESLSLQDLIKLISDNPGLLR 91 (131)
T ss_pred CcEEeeccC-ChhhHHHHHHHHH----HhcC--CHHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEe
Confidence 344555543 3477888888874 2321 12221111123455655444 35888999999999998754
No 303
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=34.46 E-value=2.7e+02 Score=23.03 Aligned_cols=100 Identities=13% Similarity=0.090 Sum_probs=57.9
Q ss_pred CCCCCHHHHH---HHHhhcCCCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCchhhhH--HHhhhhhccC
Q 027496 57 KCRFDVGDLA---RLAAESRFSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGENLFLDR--VVAFRLYDLR 131 (222)
Q Consensus 57 ~~~l~~~~l~---~l~~~~~~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~~~~~~--~~~F~~~D~d 131 (222)
+++++..|+. .++...+++.++...+.+.|+.- .....++.++...+...........+. ..+|++.=
T Consensus 69 DG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~-----k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~-- 141 (267)
T PRK09430 69 KGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREG-----KEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF-- 141 (267)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----cccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--
Confidence 5688888886 34444678888877788888873 234477888887776533221111111 11333322
Q ss_pred CCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 027496 132 QTGYIEREEVKQMVAAILMESEIKLPDDLLEAIID 166 (222)
Q Consensus 132 ~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~ 166 (222)
-||.++..|-. +|+.+-..+| ++..+...+..
T Consensus 142 ADG~l~~~E~~-~L~~Ia~~Lg--is~~df~~~~~ 173 (267)
T PRK09430 142 ADGSLHPNERQ-VLYVIAEELG--FSRFQFDQLLR 173 (267)
T ss_pred hcCCCCHHHHH-HHHHHHHHcC--CCHHHHHHHHH
Confidence 35778888844 4444434443 66666555543
No 304
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=34.35 E-value=84 Score=25.89 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=38.0
Q ss_pred CccHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHH
Q 027496 135 YIEREEVKQMVAAIL-MESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEF 188 (222)
Q Consensus 135 ~Is~~El~~~l~~~~-~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~ 188 (222)
.+++..+.++|..=+ ...|..++++++.-+-+++|..-....++.||...|.+-
T Consensus 178 ~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~Ke 232 (254)
T PF02864_consen 178 KVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCKE 232 (254)
T ss_dssp EEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHTS
T ss_pred cccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhhc
Confidence 478999999998644 457889999999988887777665556789999999644
No 305
>PLN02223 phosphoinositide phospholipase C
Probab=34.06 E-value=2.8e+02 Score=25.54 Aligned_cols=75 Identities=9% Similarity=-0.120 Sum_probs=51.5
Q ss_pred hhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHcC----CCCCCCccHHHHHHHHHh
Q 027496 117 LFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESE-IKLPDDLLEAIIDKTFADAD----IDKDGRINKEEWKEFAVR 191 (222)
Q Consensus 117 ~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g-~~~~~~~~~~~~~~~f~~~D----~~~dG~Is~~eF~~~~~~ 191 (222)
+..+...+|..|- ++.|.++.+.+.+++.-+....| ...+.+..+.+++.++.... ....+.++.+.|...+..
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 3355566888884 67899999999998833223334 24667788888887766542 122366999999999965
Q ss_pred C
Q 027496 192 N 192 (222)
Q Consensus 192 ~ 192 (222)
.
T Consensus 93 ~ 93 (537)
T PLN02223 93 T 93 (537)
T ss_pred c
Confidence 3
No 306
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=33.82 E-value=99 Score=23.10 Aligned_cols=15 Identities=13% Similarity=-0.015 Sum_probs=6.3
Q ss_pred CCccHHHHHHHHHhC
Q 027496 178 GRINKEEWKEFAVRN 192 (222)
Q Consensus 178 G~Is~~eF~~~~~~~ 192 (222)
|++.-.+.+.-++.+
T Consensus 85 gk~ea~~~I~~lk~d 99 (144)
T COG3793 85 GKREAMKEIEDLKHD 99 (144)
T ss_pred hHHHHHHHHHHhcCC
Confidence 444444444444333
No 307
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=33.69 E-value=23 Score=31.87 Aligned_cols=33 Identities=12% Similarity=-0.095 Sum_probs=27.8
Q ss_pred CchHHHHHHHhhccCCCCCCC-----hhhhhhcccccc
Q 027496 2 DSSANRSFLRAFDYDGSSSLT-----FGERICAACIPL 34 (222)
Q Consensus 2 ~~~~~~~~~~~L~~d~~~R~t-----~~e~l~h~w~~~ 34 (222)
++.|++.+..+|.+||.+|+- +.++-.||++..
T Consensus 414 S~eakslc~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~ 451 (591)
T KOG0986|consen 414 SEEAKSLCEGLLTKDPEKRLGCRGEGAQEVKEHPFFKD 451 (591)
T ss_pred CHHHHHHHHHHHccCHHHhccCCCcCcchhhhCccccc
Confidence 567889999999999999986 558889999844
No 308
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=33.51 E-value=30 Score=34.65 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=21.6
Q ss_pred hHHHHHHHhhccCCCCCCChhhhhhc
Q 027496 4 SANRSFLRAFDYDGSSSLTFGERICA 29 (222)
Q Consensus 4 ~~~~~~~~~L~~d~~~R~t~~e~l~h 29 (222)
+-...+..|+++||++|+||++.|+.
T Consensus 266 ~~Rnlil~Mi~rdPs~RlSAedyL~~ 291 (1431)
T KOG1240|consen 266 SLRNLILSMIQRDPSKRLSAEDYLQK 291 (1431)
T ss_pred cHHHHHHHHHccCchhccCHHHHHHh
Confidence 34456779999999999999999864
No 309
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=33.09 E-value=1.7e+02 Score=23.05 Aligned_cols=79 Identities=15% Similarity=0.069 Sum_probs=44.7
Q ss_pred CCCCcccHHHHHHHHhcCCCCCchhhhHHHhhhhhccCCCCCccHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Q 027496 94 IKDGLIHKEELQVALFQAPYGENLFLDRVVAFRLYDLRQTGYIEREE-VKQMVAAILMESEIKLPDDLLEAIIDKTFADA 172 (222)
Q Consensus 94 ~~~G~I~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~E-l~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~ 172 (222)
|-||+|+.++....+...-... +.. .+++.=-+|.||..+ |.+++ ...+ .+.+++-+.+ .+.+
T Consensus 9 DFDGTITl~Ds~~~itdtf~~~----e~k---~l~~~vls~tiS~rd~~g~mf----~~i~--~s~~Eile~l---lk~i 72 (220)
T COG4359 9 DFDGTITLNDSNDYITDTFGPG----EWK---ALKDGVLSKTISFRDGFGRMF----GSIH--SSLEEILEFL---LKDI 72 (220)
T ss_pred cCCCceEecchhHHHHhccCch----HHH---HHHHHHhhCceeHHHHHHHHH----HhcC--CCHHHHHHHH---Hhhc
Confidence 3789999999988775431111 111 444544577888543 33343 3444 3334443333 2444
Q ss_pred CCCCCCCccHHHHHHHHHhC
Q 027496 173 DIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 173 D~~~dG~Is~~eF~~~~~~~ 192 (222)
-.+. .|.||..++..+
T Consensus 73 ~Idp----~fKef~e~ike~ 88 (220)
T COG4359 73 KIDP----GFKEFVEWIKEH 88 (220)
T ss_pred ccCc----cHHHHHHHHHHc
Confidence 4433 689999999765
No 310
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=32.39 E-value=75 Score=22.24 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=38.0
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCC-CCccHHHHHHHHHhCchHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKD-GRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~d-G~Is~~eF~~~~~~~~~~~~ 197 (222)
-|...|...+ ..+.+|+..+++ ..|.+ .+.+-..-...|+....+.. ..++-++.+.+|..+|.+++
T Consensus 25 ~~~~idi~~~-~~~~~el~~~~~----~~~~~--~~~l~~~~~~~~~~l~~~~~~~~~s~~e~~~~l~~~p~Lik 92 (111)
T cd03036 25 DYTAIDIVEE-PPSKEELKKWLE----KSGLP--LKKFFNTSGKSYRELGLKDKLPSLSEEEALELLSSDGMLIK 92 (111)
T ss_pred ceEEecccCC-cccHHHHHHHHH----HcCCC--HHHHHhcCCchHHhCCcccccccCCHHHHHHHHHhCcCeee
Confidence 4555666554 478888888874 33321 12111111123455544422 23588999999999997654
No 311
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=31.94 E-value=51 Score=32.01 Aligned_cols=43 Identities=14% Similarity=-0.041 Sum_probs=32.9
Q ss_pred hHHHHHHHhhccCCCCCCChhhhhhcccccchhhHHHHHHHHh
Q 027496 4 SANRSFLRAFDYDGSSSLTFGERICAACIPLIAIIEAVVITVA 46 (222)
Q Consensus 4 ~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~~~~~~~~~~~l~ 46 (222)
+-.+.+..+|.+|-.+|++..+.|.||+++..++...+...++
T Consensus 257 ~FndFIs~cL~Kd~e~RP~~~~ll~hpFi~e~~~e~qir~~ik 299 (953)
T KOG0587|consen 257 KFNDFISTCLVKDYEQRPSTEELLKHPFITEQPNERQVRIQIK 299 (953)
T ss_pred HHHHHHHHHHhhccccCcchhhhccCCcccccccHHHHHHHHH
Confidence 4467888999999999999999999999975554444433333
No 312
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=31.73 E-value=2.2e+02 Score=21.29 Aligned_cols=85 Identities=11% Similarity=0.061 Sum_probs=46.9
Q ss_pred HHHHHHHHhhccCCCCCCcccHHHHHHHHhcCCCCCc--hhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCC
Q 027496 80 EALSELYKNLSCSIIKDGLIHKEELQVALFQAPYGEN--LFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLP 157 (222)
Q Consensus 80 ~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~~~~~~~--~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~ 157 (222)
+.++..|-.+... +...++-..|..++.....-.. ...+.-.+|..+-..+...|++++|..+|..+-...+...+
T Consensus 2 ~~~F~~f~~fG~~--~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~~~~ 79 (154)
T PF05517_consen 2 EAVFKAFASFGKK--NGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGKDKS 79 (154)
T ss_dssp HHHHHHHHCSSTS--TSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSCCCT
T ss_pred HHHHHHHHHhcCC--ccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhcccc
Confidence 3445555444432 5567888888888865322111 11222346777655566679999999999776555443222
Q ss_pred HHHHHHHHHHH
Q 027496 158 DDLLEAIIDKT 168 (222)
Q Consensus 158 ~~~~~~~~~~~ 168 (222)
.++++...+
T Consensus 80 --~~~~~~~kl 88 (154)
T PF05517_consen 80 --SAEELKEKL 88 (154)
T ss_dssp --HHHHHHHHH
T ss_pred --cHHHHHHHH
Confidence 344444433
No 313
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.68 E-value=31 Score=35.88 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=42.8
Q ss_pred hhhhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH
Q 027496 117 LFLDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV 190 (222)
Q Consensus 117 ~~~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~ 190 (222)
.+++...++..||++..|+|...++..+++++-..++.....+. .++ -..+-.+.+|.|++.+-+.++.
T Consensus 1415 d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--kli---~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1415 DFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--KLI---SMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred cHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--eee---eeecCcCCCCeeehhhHHHHHH
Confidence 34555668899999999999999999999766333332222221 122 1233344666677766555553
No 314
>PRK10026 arsenate reductase; Provisional
Probab=30.34 E-value=91 Score=23.16 Aligned_cols=56 Identities=14% Similarity=0.340 Sum_probs=35.0
Q ss_pred CccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 135 YIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 135 ~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
.+|.+|+...++ ..| .+.+.+-.--...|+....+.+ .+|.++.+.+|..+|.+++
T Consensus 38 ppt~~eL~~~l~----~~g--~~~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~LIK 93 (141)
T PRK10026 38 PPTRDELVKLIA----DMG--ISVRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPILIN 93 (141)
T ss_pred CcCHHHHHHHHH----hCC--CCHHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCcccee
Confidence 488899998874 333 2222221112234566655444 4799999999999997654
No 315
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=28.94 E-value=1.5e+02 Score=18.54 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCCCCCCCccHHHHHH
Q 027496 161 LEAIIDKTFADADIDKDGRINKEEWKE 187 (222)
Q Consensus 161 ~~~~~~~~f~~~D~~~dG~Is~~eF~~ 187 (222)
+...+...+..+|...=|.-++.+|++
T Consensus 29 l~~~~~~~~~~f~~~~yG~~~l~~ll~ 55 (74)
T PF12872_consen 29 LGQEYKKKYPDFDPRDYGFSSLSELLE 55 (74)
T ss_dssp HHHHHHHHHTT--TCCTTSSSHHHHHH
T ss_pred HHHHHHHHCCCCCccccCCCcHHHHHH
Confidence 333333334456666667667766664
No 316
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=27.91 E-value=1.1e+02 Score=19.85 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCCcccHHHHHHHHhc
Q 027496 74 FSVNELEALSELYKNLSCSIIKDGLIHKEELQVALFQ 110 (222)
Q Consensus 74 ~t~~ei~~l~~~F~~~d~~~~~~G~I~~~ef~~~l~~ 110 (222)
+.+.....+...|+.+ ..+.|+.+||...+..
T Consensus 22 l~~~~~~~l~~~Y~~~-----k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 22 LPPSKMDLLQKHYEEF-----KKKKISREEFVRKLRQ 53 (70)
T ss_pred CCHHHHHHHHHHHHHH-----HHCCCCHHHHHHHHHH
Confidence 4444455555555553 4589999999887754
No 317
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=27.12 E-value=80 Score=23.45 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=19.4
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhcc
Q 027496 67 RLAAESRFSVNELEALSELYKNLSC 91 (222)
Q Consensus 67 ~l~~~~~~t~~ei~~l~~~F~~~d~ 91 (222)
+|. ..++|++||..|+..|..+-.
T Consensus 5 RLl-~~GFS~~eI~~LR~QF~~~~~ 28 (140)
T PF13373_consen 5 RLL-SAGFSPEEIQDLRSQFHSIYG 28 (140)
T ss_pred HHH-HcCCCHHHHHHHHHHHHHHhc
Confidence 444 348999999999999988654
No 318
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=26.50 E-value=1.9e+02 Score=19.11 Aligned_cols=53 Identities=13% Similarity=0.163 Sum_probs=35.0
Q ss_pred CCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHH-hCchHHH
Q 027496 132 QTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAV-RNPSLLK 197 (222)
Q Consensus 132 ~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~-~~~~~~~ 197 (222)
++|.|+.++...+. ...-+.+....+++ .. ...|...+.-|+.++. .+|.+..
T Consensus 26 ~~~Vit~e~~~~I~-------a~~T~~~kar~Lld----~l--~~kG~~A~~~F~~~L~e~~p~L~~ 79 (82)
T cd08330 26 GKKVITQEQYSEVR-------AEKTNQEKMRKLFS----FV--RSWGASCKDIFYQILREEEPYLVE 79 (82)
T ss_pred HCCCCCHHHHHHHH-------cCCCcHHHHHHHHH----HH--HccCHHHHHHHHHHHHHhChHHHh
Confidence 46889988888874 22344555555553 33 3467789999999997 4555543
No 319
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=26.40 E-value=1.5e+02 Score=20.87 Aligned_cols=63 Identities=14% Similarity=0.269 Sum_probs=37.4
Q ss_pred hhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHH---HHHHHHcCCCCCCCccHHHHHHHHHhCchHHHh
Q 027496 126 RLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAII---DKTFADADIDKDGRINKEEWKEFAVRNPSLLKN 198 (222)
Q Consensus 126 ~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~---~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~ 198 (222)
...|...+ .+|.+|+..+++ ..| ++. ..+++ ...|+....+. ..++-++.+.+|.++|.+++-
T Consensus 27 ~~~di~~~-p~t~~el~~~l~----~~g--~~~--~~~lin~~~~~~~~l~~~~-~~ls~~e~i~~l~~~P~LikR 92 (114)
T TIGR00014 27 EVVKYLKN-PPTKSELEAIFA----KLG--LTV--AREMIRTKEALYKELGLSD-PNLSDQELLDAMVAHPILLER 92 (114)
T ss_pred EEEeccCC-CcCHHHHHHHHH----HcC--Cch--HHHHHhcCCcHHHHcCCCc-cCCCHHHHHHHHHHCcCcccC
Confidence 33444433 488999999874 334 221 01223 12344544433 357889999999999987653
No 320
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=26.40 E-value=1.2e+02 Score=21.94 Aligned_cols=63 Identities=8% Similarity=0.141 Sum_probs=36.6
Q ss_pred hhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 125 FRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 125 F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
|...|.-.+ .+|.+|+...++. .| .+.+-..-...++..+.+. ..++-++.+.+|..+|.+++
T Consensus 28 ~~~~d~~~~-p~t~~eL~~~l~~----~g----~~~lin~~~~~~r~l~~~~-~~ls~~e~i~lm~~~P~LIK 90 (126)
T TIGR01616 28 VEVQDILKE-PWHADTLRPYFGN----KP----VGSWFNRAAPRVKSGEVNP-DSIDEASALALMVSDPLLIR 90 (126)
T ss_pred cEEEeccCC-CcCHHHHHHHHHH----cC----HHHHHhccchHhhhCCCCc-ccCCHHHHHHHHHhCcCeEe
Confidence 344454443 4889999998742 22 1111111112345555433 35788999999999997654
No 321
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=26.34 E-value=44 Score=22.84 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 161 LEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 161 ~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
+.+++..+.+.+...|.++|+.++|+-+++++|.-+.
T Consensus 36 i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~Kl~ 72 (93)
T PF02269_consen 36 IIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKKLA 72 (93)
T ss_dssp HHHHHHHHHC---------------------------
T ss_pred HHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHHHH
Confidence 3444554445555667789999999999999886433
No 322
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=26.25 E-value=36 Score=30.63 Aligned_cols=34 Identities=15% Similarity=0.263 Sum_probs=30.2
Q ss_pred CCchHHHHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 1 MDSSANRSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 1 ~~~~~~~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
.+|.|+..+.|+|......|+...++-+||++..
T Consensus 713 VsseAkaFIRRCLaYRKeDR~DV~qLA~dpyllP 746 (775)
T KOG1151|consen 713 VSSEAKAFIRRCLAYRKEDRIDVQQLACDPYLLP 746 (775)
T ss_pred cCHHHHHHHHHHHHhhhhhhhhHHHHccCccccc
Confidence 3678999999999999999999999999998843
No 323
>PLN02222 phosphoinositide phospholipase C 2
Probab=25.83 E-value=3e+02 Score=25.69 Aligned_cols=66 Identities=9% Similarity=0.225 Sum_probs=44.1
Q ss_pred hhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhC
Q 027496 119 LDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEI-KLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRN 192 (222)
Q Consensus 119 ~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~-~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~ 192 (222)
.+...+|..|-. ++.++.++|..+|.. ..|. ..+.+.+..++... + ..-..+.++++.|...+...
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~---~Q~~~~~~~~~~~~ii~~~-~--~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLID---VQKQDKATREDAQSIINSA-S--SLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHH---hcCCccCCHHHHHHHHHhh-h--hhhhccCcCHHHHHHHhcCC
Confidence 345567787753 479999999999863 3343 35666777777531 1 11235679999999999653
No 324
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=25.16 E-value=1.4e+02 Score=21.08 Aligned_cols=64 Identities=11% Similarity=0.251 Sum_probs=37.0
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
.|...|.-.+ .+|.+|+...++ ..|. ++-+... ...++....+. ..+|-++.+.+|..+|.+++
T Consensus 26 ~~~~~d~~~~-p~s~~eL~~~l~----~~g~---~~l~n~~-~~~~r~~~~~~-~~ls~~e~~~ll~~~P~Lik 89 (113)
T cd03033 26 EVEVRDLLTE-PWTAETLRPFFG----DLPV---AEWFNPA-APRVKSGEVVP-EALDEEEALALMIADPLLIR 89 (113)
T ss_pred CcEEeehhcC-CCCHHHHHHHHH----HcCH---HHHHhcc-cHHHHhcCCCc-cCCCHHHHHHHHHhCcceee
Confidence 3444454444 488999999874 2231 1111111 22344444332 35789999999999998755
No 325
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=24.39 E-value=3.5e+02 Score=23.44 Aligned_cols=57 Identities=18% Similarity=0.145 Sum_probs=35.2
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFA 189 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~ 189 (222)
....||..+.|.++.--.+.++.. ..|.++ .+-++.+|.... |+.|-+.+-.|.+++
T Consensus 115 lLaA~ds~~~g~~~vfavkialat---lc~gk~-----~dklryIfs~is-ds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALAT---LCGGKI-----KDKLRYIFSLIS-DSRGIMQEIQRDQFL 171 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhh---hccchH-----HHHHHHHHHHHc-cchHHHHHHHHHHHH
Confidence 445689999999998777777642 233333 334667777775 456755444444433
No 326
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=24.31 E-value=1.4e+02 Score=22.80 Aligned_cols=36 Identities=0% Similarity=0.015 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHhhccC
Q 027496 57 KCRFDVGDLARLAAESRFSVNELEALSELYKNLSCS 92 (222)
Q Consensus 57 ~~~l~~~~l~~l~~~~~~t~~ei~~l~~~F~~~d~~ 92 (222)
...++......+++..++++.....+++.|....|+
T Consensus 113 ~~~V~~~~w~~l~~~~g~~~~~m~~wh~~fe~~~p~ 148 (172)
T cd04790 113 QRLVTKEKWVAILKAAGMDEADMRRWHIEFEKMEPE 148 (172)
T ss_pred cccCCHHHHHHHHHHcCCChHHHHHHHHHHHHhCcH
Confidence 447888889999999999999999999999998764
No 327
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=23.77 E-value=1.6e+02 Score=17.16 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=22.0
Q ss_pred CCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 027496 132 QTGYIEREEVKQMVAAILMESEIKLPDDLLEAIID 166 (222)
Q Consensus 132 ~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~ 166 (222)
..|.|+ +.+.++..+ ...|..++++.++.+++
T Consensus 14 ~~GlI~--~~~~~l~~l-~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLIS--EVKPLLDRL-QQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChh--hHHHHHHHH-HHcCcccCHHHHHHHHH
Confidence 467777 666666655 67788888877666653
No 328
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=23.71 E-value=89 Score=29.68 Aligned_cols=28 Identities=7% Similarity=-0.063 Sum_probs=23.9
Q ss_pred HHHHHhhccCCCCCCChhhhhhcccccc
Q 027496 7 RSFLRAFDYDGSSSLTFGERICAACIPL 34 (222)
Q Consensus 7 ~~~~~~L~~d~~~R~t~~e~l~h~w~~~ 34 (222)
..+.-.|.++|.+|+|+.-.|.||++..
T Consensus 249 ~fvK~altknpKkRptaeklL~h~fvs~ 276 (829)
T KOG0576|consen 249 NFVKGALTKNPKKRPTAEKLLQHPFVSQ 276 (829)
T ss_pred HHHHHHhcCCCccCCChhhheeceeecc
Confidence 3455789999999999999999999944
No 329
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=23.57 E-value=1.8e+02 Score=23.04 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=27.3
Q ss_pred HhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHH
Q 027496 45 VASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALSE 84 (222)
Q Consensus 45 l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~ei~~l~~ 84 (222)
+-..|.... ++.++....|++.+++++.+|+.|++
T Consensus 65 LE~~F~~~~-----~L~p~~K~~LAk~LgL~pRQVavWFQ 99 (198)
T KOG0483|consen 65 LEKSFESEK-----KLEPERKKKLAKELGLQPRQVAVWFQ 99 (198)
T ss_pred hHHhhcccc-----ccChHHHHHHHHhhCCChhHHHHHHh
Confidence 444465544 78888899999999999999988875
No 330
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=22.89 E-value=2.6e+02 Score=21.24 Aligned_cols=56 Identities=11% Similarity=0.223 Sum_probs=42.3
Q ss_pred CccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHHhc
Q 027496 135 YIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLKNM 199 (222)
Q Consensus 135 ~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~~~ 199 (222)
+.+.+|+.+++. -.-++++++++.++.+-+.+.. |..|..+..+-+..+|.+++.+
T Consensus 86 qcs~~DLsdii~------i~f~~deel~~~~e~i~~~v~~---Gn~Sl~~lsr~l~~sp~firgl 141 (160)
T PF09824_consen 86 QCSMEDLSDIIY------IAFMSDEELRDYVEKIEKEVEA---GNTSLSDLSRKLGISPVFIRGL 141 (160)
T ss_pred EeeHHHHHHHHh------eeecCHHHHHHHHHHHHHHHHc---CCCcHHHHHHHhCCCHHHHHHH
Confidence 467888888873 2246888899998888787753 7788888888888888776643
No 331
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=22.41 E-value=2.5e+02 Score=20.90 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHH--cCCCCCCCc----cHHHHHHHH
Q 027496 157 PDDLLEAIIDKTFAD--ADIDKDGRI----NKEEWKEFA 189 (222)
Q Consensus 157 ~~~~~~~~~~~~f~~--~D~~~dG~I----s~~eF~~~~ 189 (222)
++..+..++.++|.+ ++.+..|.- +|++++.++
T Consensus 14 ~dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~l 52 (141)
T PF12588_consen 14 SDPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLL 52 (141)
T ss_pred cCHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHH
Confidence 445667778888888 333344433 677776665
No 332
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=21.65 E-value=94 Score=20.91 Aligned_cols=46 Identities=15% Similarity=0.310 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc--CCCCCCCccHHHHH
Q 027496 137 EREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADA--DIDKDGRINKEEWK 186 (222)
Q Consensus 137 s~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~--D~~~dG~Is~~eF~ 186 (222)
+..||.+.+. .....++..++..+++.++..+ ....++.|.+.+|-
T Consensus 2 ~k~eli~~i~----~~~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gfG 49 (94)
T TIGR00988 2 TKSELIERIA----TQQSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGFG 49 (94)
T ss_pred CHHHHHHHHH----HHcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCcE
Confidence 4566666652 2233467777777766665554 22345556666553
No 333
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=20.88 E-value=2.3e+02 Score=19.11 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=21.3
Q ss_pred CccHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 027496 135 YIEREEVKQMVAAILMESEIKLPDDLLEAIID 166 (222)
Q Consensus 135 ~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~ 166 (222)
.||.+||.... ...|..++.++.+.++.
T Consensus 14 ~iT~~eLlkys----kqy~i~it~~QA~~I~~ 41 (85)
T PF11116_consen 14 NITAKELLKYS----KQYNISITKKQAEQIAN 41 (85)
T ss_pred cCCHHHHHHHH----HHhCCCCCHHHHHHHHH
Confidence 57888888876 56788888888777773
No 334
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=20.82 E-value=49 Score=23.04 Aligned_cols=66 Identities=23% Similarity=0.353 Sum_probs=34.3
Q ss_pred hhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHHH
Q 027496 125 FRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 125 F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
|...|...+ .+|.+|+..++.. .|..+. .+-.-=...|+..+......+|-+|.+.+|.++|.+++
T Consensus 23 ~~~~d~~k~-p~s~~el~~~l~~----~~~~~~--~lin~~~~~~k~l~~~~~~~~s~~e~i~~l~~~p~Lik 88 (110)
T PF03960_consen 23 YEFIDYKKE-PLSREELRELLSK----LGNGPD--DLINTRSKTYKELGKLKKDDLSDEELIELLLENPKLIK 88 (110)
T ss_dssp EEEEETTTS----HHHHHHHHHH----HTSSGG--GGB-TTSHHHHHTTHHHCTTSBHHHHHHHHHHSGGGB-
T ss_pred eEeehhhhC-CCCHHHHHHHHHH----hcccHH--HHhcCccchHhhhhhhhhhhhhhHHHHHHHHhChhhee
Confidence 344555444 3899999998853 342111 00000011234444112345899999999999998654
No 335
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=20.74 E-value=69 Score=24.45 Aligned_cols=43 Identities=14% Similarity=0.261 Sum_probs=27.0
Q ss_pred hhhhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 027496 124 AFRLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFAD 171 (222)
Q Consensus 124 ~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~ 171 (222)
+++.+-.++...|+.++|...+ +.|..+++++++..+...+..
T Consensus 90 A~~Yl~~~~~~~~d~~~Fe~~c-----GVGV~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 90 ALKYLKSNPSEPIDVAEFEKAC-----GVGVVVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp HHHHHHHHGG-G--HHHHHHTT-----TTT----HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCHHHHHHHc-----CCCeEECHHHHHHHHHHHHHH
Confidence 6666655555689999999986 678889999999988755543
No 336
>PLN02228 Phosphoinositide phospholipase C
Probab=20.56 E-value=4.9e+02 Score=24.27 Aligned_cols=65 Identities=12% Similarity=0.252 Sum_probs=42.0
Q ss_pred hhHHHhhhhhccCCCCCccHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCC----CCCCccHHHHHHHHHhC
Q 027496 119 LDRVVAFRLYDLRQTGYIEREEVKQMVAAILMESEIK-LPDDLLEAIIDKTFADADID----KDGRINKEEWKEFAVRN 192 (222)
Q Consensus 119 ~~~~~~F~~~D~d~~G~Is~~El~~~l~~~~~~~g~~-~~~~~~~~~~~~~f~~~D~~----~dG~Is~~eF~~~~~~~ 192 (222)
.+...+|..|-. ++.++.++|..+|... .|.. .+.+.+..++ ..+... ..|.++.+.|...+...
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~---Q~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEV---QGERHAGLDYVQDIF----HSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHh---cCCccCCHHHHHHHH----HHhccchhhcccCccCHHHHHHHhcCc
Confidence 455567777753 3689999999998633 3322 3444455555 444322 34679999999999653
No 337
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=20.42 E-value=2.2e+02 Score=18.48 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCCCccHHHHHHHHHhCchHH
Q 027496 137 EREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADADIDKDGRINKEEWKEFAVRNPSLL 196 (222)
Q Consensus 137 s~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~eF~~~~~~~~~~~ 196 (222)
+.++++.-+...+ ..++..++..+-..+++ +| ++.+|-.+++.-+..+.
T Consensus 14 ~~e~vk~~F~~~~----~~Vs~~EI~~~Eq~Li~------eG-~~~eeiq~LCdvH~~lf 62 (71)
T PF04282_consen 14 DPEEVKEEFKKLF----SDVSASEISAAEQELIQ------EG-MPVEEIQKLCDVHAALF 62 (71)
T ss_pred CHHHHHHHHHHHH----CCCCHHHHHHHHHHHHH------cC-CCHHHHHHHhHHHHHHH
Confidence 4555555443221 23555555544433222 45 88888888887665544
No 338
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=20.38 E-value=1.4e+02 Score=24.70 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=32.5
Q ss_pred cchhhHHHHHHHHhhhhcCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q 027496 33 PLIAIIEAVVITVASCFRYRPPVQKCRFDVGDLARLAAESRFSVNELEALSEL 85 (222)
Q Consensus 33 ~~~~~~~~~~~~l~~~f~~~~~~~~~~l~~~~l~~l~~~~~~t~~ei~~l~~~ 85 (222)
|...+..+-+.+|+.-|.... .++...-..|...+++++.+|+.|++.
T Consensus 249 PRTAFtaeQL~RLK~EF~enR-----YlTEqRRQ~La~ELgLNEsQIKIWFQN 296 (342)
T KOG0493|consen 249 PRTAFTAEQLQRLKAEFQENR-----YLTEQRRQELAQELGLNESQIKIWFQN 296 (342)
T ss_pred ccccccHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHhCcCHHHhhHHhhh
Confidence 334455566677776565543 677777777788888888888877653
No 339
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=20.32 E-value=1.5e+02 Score=23.00 Aligned_cols=34 Identities=3% Similarity=0.256 Sum_probs=19.4
Q ss_pred hccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 027496 128 YDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAII 165 (222)
Q Consensus 128 ~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~ 165 (222)
+..|.+|++..+|+.+.+. ..+..++.+++.+++
T Consensus 25 L~~d~~G~v~v~dLL~~~~----~~~~~~t~~~i~~vV 58 (186)
T PF01885_consen 25 LVMDPDGWVSVDDLLRALR----FKGLWVTEEDIREVV 58 (186)
T ss_dssp ----TT--EEHHHHHHHHH----HT-TT--HHHHHHHH
T ss_pred CccCCCCCEeHHHHHHHHH----HcCCCCCHHHHHHHH
Confidence 3467899999999988763 335567788888887
No 340
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=20.18 E-value=3.1e+02 Score=19.07 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=35.6
Q ss_pred hhhccCCCCCccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 027496 126 RLYDLRQTGYIEREEVKQMVAAILMESEIKLPDDLLEAIIDKTFADAD 173 (222)
Q Consensus 126 ~~~D~d~~G~Is~~El~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D 173 (222)
+.+...++|.--+++-...+...+...|.++++++++..++.....+.
T Consensus 58 q~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~m~ 105 (108)
T PF09682_consen 58 QVAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAVKEMN 105 (108)
T ss_pred HHHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh
Confidence 445445578777777777777667888999999999999876666553
No 341
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=20.03 E-value=2.8e+02 Score=18.89 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=19.0
Q ss_pred CCCCCccHHHHHHHHHhCchHHH
Q 027496 175 DKDGRINKEEWKEFAVRNPSLLK 197 (222)
Q Consensus 175 ~~dG~Is~~eF~~~~~~~~~~~~ 197 (222)
-+.|+++.+||+-+++++|.-+.
T Consensus 50 ~r~~k~~~eD~~FliR~D~~Kl~ 72 (92)
T cd07978 50 RRRGKVKVEDLIFLLRKDPKKLA 72 (92)
T ss_pred cCCCCCCHHHHHHHHhcCHHHHH
Confidence 46788999999999999886543
Done!