Query 027500
Match_columns 222
No_of_seqs 185 out of 1483
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 10:51:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01910 Wali7 This domain is p 100.0 3.7E-48 8E-53 324.5 23.8 216 2-219 1-224 (224)
2 PF12481 DUF3700: Aluminium in 100.0 2.7E-43 5.9E-48 290.8 20.9 218 2-219 1-228 (228)
3 PLN02549 asparagine synthase ( 100.0 2.3E-38 5.1E-43 299.6 20.9 182 1-201 1-196 (578)
4 PRK09431 asnB asparagine synth 100.0 3.8E-38 8.3E-43 297.3 20.8 181 1-200 1-196 (554)
5 PTZ00077 asparagine synthetase 100.0 6.7E-38 1.4E-42 297.1 20.8 182 1-201 1-206 (586)
6 COG0367 AsnB Asparagine syntha 100.0 8.6E-37 1.9E-41 287.4 19.5 180 1-201 1-202 (542)
7 PRK08525 amidophosphoribosyltr 100.0 2.8E-35 6.1E-40 271.4 21.5 199 1-216 1-256 (445)
8 PRK07631 amidophosphoribosyltr 100.0 3.6E-35 7.7E-40 271.6 20.6 199 1-217 11-265 (475)
9 TIGR03104 trio_amidotrans aspa 100.0 5.4E-35 1.2E-39 278.1 19.0 159 1-179 1-169 (589)
10 cd03766 Gn_AT_II_novel Gn_AT_I 100.0 1.2E-34 2.5E-39 238.3 16.2 170 1-189 1-178 (181)
11 PRK07272 amidophosphoribosyltr 100.0 2.7E-34 6E-39 266.2 20.5 202 1-219 11-269 (484)
12 PRK06781 amidophosphoribosyltr 100.0 9E-34 2E-38 262.4 21.7 199 1-217 11-265 (471)
13 PRK06388 amidophosphoribosyltr 100.0 1.1E-33 2.4E-38 261.8 21.2 198 1-216 19-272 (474)
14 cd00712 AsnB Glutamine amidotr 100.0 1.3E-33 2.8E-38 238.2 19.5 159 2-180 1-168 (220)
15 TIGR03108 eps_aminotran_1 exos 100.0 7.6E-34 1.7E-38 272.1 19.4 161 1-179 1-170 (628)
16 PRK07349 amidophosphoribosyltr 100.0 2.7E-33 5.9E-38 260.3 21.2 200 1-216 33-293 (500)
17 PRK07847 amidophosphoribosyltr 100.0 3E-33 6.4E-38 260.6 20.4 200 1-217 23-284 (510)
18 PRK09123 amidophosphoribosyltr 100.0 4.6E-33 9.9E-38 258.3 20.8 198 1-216 21-276 (479)
19 TIGR01536 asn_synth_AEB aspara 100.0 6.2E-33 1.3E-37 257.4 19.3 143 27-179 15-167 (467)
20 PRK08341 amidophosphoribosyltr 100.0 1.6E-32 3.4E-37 252.4 21.0 194 1-216 4-252 (442)
21 PRK05793 amidophosphoribosyltr 100.0 1.5E-32 3.2E-37 254.7 20.8 200 1-216 14-269 (469)
22 KOG0571 Asparagine synthase (g 100.0 1.1E-33 2.4E-38 252.3 11.5 186 1-205 1-200 (543)
23 PLN02440 amidophosphoribosyltr 100.0 4.2E-32 9.1E-37 252.3 20.6 199 1-216 1-256 (479)
24 PRK09246 amidophosphoribosyltr 100.0 5.5E-32 1.2E-36 252.8 19.0 202 1-218 1-272 (501)
25 cd00715 GPATase_N Glutamine am 100.0 3.9E-31 8.4E-36 227.6 21.8 195 2-213 1-252 (252)
26 cd00714 GFAT Glutamine amidotr 100.0 3.3E-31 7.1E-36 223.2 18.0 165 2-186 1-207 (215)
27 TIGR01134 purF amidophosphorib 100.0 1.1E-30 2.5E-35 240.7 21.5 198 2-216 1-254 (442)
28 PRK00331 glucosamine--fructose 100.0 2.3E-29 5.1E-34 240.2 18.8 168 1-188 1-210 (604)
29 COG0034 PurF Glutamine phospho 100.0 1.3E-28 2.9E-33 222.2 19.3 202 1-217 4-265 (470)
30 cd01907 GlxB Glutamine amidotr 100.0 2E-28 4.4E-33 210.5 17.9 161 2-179 1-231 (249)
31 TIGR01135 glmS glucosamine--fr 100.0 5.1E-28 1.1E-32 231.1 19.2 167 2-188 1-209 (607)
32 cd00352 Gn_AT_II Glutamine ami 100.0 3.2E-27 6.9E-32 197.1 19.7 157 31-189 21-217 (220)
33 PTZ00295 glucosamine-fructose- 100.0 2.2E-27 4.8E-32 228.0 18.5 176 1-196 24-255 (640)
34 PF13537 GATase_7: Glutamine a 99.9 1.3E-27 2.7E-32 185.2 10.0 107 62-177 9-125 (125)
35 cd01909 betaLS_CarA_N Glutamin 99.9 1.4E-26 3.1E-31 192.5 13.9 95 74-180 50-150 (199)
36 KOG0572 Glutamine phosphoribos 99.9 2.6E-25 5.6E-30 196.3 15.6 205 1-218 1-274 (474)
37 PF13522 GATase_6: Glutamine a 99.9 1.1E-24 2.5E-29 170.6 14.6 120 42-171 1-133 (133)
38 PLN02981 glucosamine:fructose- 99.9 7.7E-24 1.7E-28 204.5 18.1 183 1-196 1-277 (680)
39 PTZ00394 glucosamine-fructose- 99.9 1.1E-23 2.5E-28 202.9 18.5 131 52-188 98-265 (670)
40 COG0449 GlmS Glucosamine 6-pho 99.8 8.8E-21 1.9E-25 177.9 13.9 167 1-188 1-207 (597)
41 KOG0573 Asparagine synthase [A 99.7 5.7E-16 1.2E-20 139.8 13.2 164 1-188 1-170 (520)
42 cd00713 GltS Glutamine amidotr 99.6 3.6E-14 7.7E-19 129.4 13.5 118 50-177 200-373 (413)
43 TIGR03442 conserved hypothetic 99.5 1E-13 2.2E-18 119.5 13.4 123 52-189 83-236 (251)
44 cd01908 YafJ Glutamine amidotr 99.5 3.3E-13 7.2E-18 116.5 11.9 128 51-189 80-249 (257)
45 KOG1268 Glucosamine 6-phosphat 99.5 2.9E-13 6.3E-18 124.3 10.2 105 52-161 80-203 (670)
46 PF00310 GATase_2: Glutamine a 99.4 7.2E-13 1.6E-17 119.6 10.4 114 49-172 193-361 (361)
47 PRK11750 gltB glutamate syntha 98.6 2.7E-07 5.8E-12 94.7 11.8 62 125-188 333-396 (1485)
48 PF13230 GATase_4: Glutamine a 98.2 1.2E-05 2.5E-10 70.3 9.9 95 52-149 72-187 (271)
49 COG0067 GltB Glutamate synthas 97.5 0.00086 1.9E-08 60.8 10.5 122 50-180 201-349 (371)
50 PF09147 DUF1933: Domain of un 97.5 0.00081 1.8E-08 54.8 9.2 93 74-178 47-145 (201)
51 COG0121 Predicted glutamine am 95.9 0.059 1.3E-06 46.6 9.1 39 52-90 71-116 (252)
52 KOG0399 Glutamate synthase [Am 90.2 1.3 2.8E-05 46.0 8.1 48 126-175 408-455 (2142)
53 COG0067 GltB Glutamate synthas 77.3 1.4 3E-05 40.3 1.7 39 1-48 12-52 (371)
54 PF10736 DUF2527: Protein of u 60.8 2.8 6E-05 25.0 -0.0 8 1-8 1-8 (38)
55 PF04566 RNA_pol_Rpb2_4: RNA p 48.9 26 0.00056 23.7 3.2 23 135-158 36-60 (63)
56 COG4911 Uncharacterized conser 37.9 40 0.00086 25.5 3.0 25 120-144 73-97 (123)
57 TIGR03823 FliZ flagellar regul 36.1 26 0.00055 28.2 1.9 19 74-92 33-51 (168)
58 PRK11582 flagella biosynthesis 35.4 27 0.00059 28.1 1.9 19 74-92 33-51 (169)
59 KOG1963 WD40 repeat protein [G 34.4 95 0.0021 31.3 5.8 81 127-218 214-301 (792)
60 PF08973 TM1506: Domain of unk 32.2 17 0.00037 28.4 0.3 26 129-157 10-35 (134)
61 PF00310 GATase_2: Glutamine a 29.8 32 0.0007 31.3 1.7 21 28-48 19-45 (361)
62 COG4315 Uncharacterized protei 24.9 73 0.0016 24.6 2.6 32 125-161 86-117 (138)
63 COG1763 MobB Molybdopterin-gua 22.9 81 0.0018 25.4 2.7 20 23-42 12-31 (161)
No 1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum. Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
Probab=100.00 E-value=3.7e-48 Score=324.54 Aligned_cols=216 Identities=64% Similarity=1.077 Sum_probs=189.5
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEeCCCCCCCCceEecCCCEEEEEc
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFE 81 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~Lg~~r~~~~~~~QP~~~~~~~~~lv~n 81 (222)
++||-+.++.+|+++++|.+... +..-.++++.+....|++..+.+++...|+++..+...-.|.+++.++++++++|
T Consensus 1 laif~~~~~~~p~el~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfn 78 (224)
T cd01910 1 LAVFSKAVAKPPEELVSAGSRTP--AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQ 78 (224)
T ss_pred CcccccccCCCChHHcCCCcccc--CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEE
Confidence 57999999999999988876543 3344579999999999988889988899998765555556777777788999999
Q ss_pred ceecChhHHHHHhCCCCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEe
Q 027500 82 GALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGIT 161 (222)
Q Consensus 82 G~I~N~~eL~~~lg~~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~ 161 (222)
|+|||+.+|+++|+...+.+|+++++++|++|+|+|+.+..+++++|+|+|||+|||.+++++++|||++|++||||+..
T Consensus 79 GeIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~ 158 (224)
T cd01910 79 GHLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIA 158 (224)
T ss_pred eEEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEe
Confidence 99999999999998644555555568999999877876667899999999999999999999999999999999999987
Q ss_pred cCCEEEEEechhhHhhhccccceecCC------CCCeEEEeCCCCcccccCCCccc--ccCceEEe
Q 027500 162 ADGHVAFADDADLLKGACGKSLASFPQ------VGGLRSFENPKNKITAVPAAEEE--IWGATFKV 219 (222)
Q Consensus 162 ~~~~~~faSe~~aL~~~~~~~~~~~pp------~~~~~~~~~~~~~~~~~~r~~s~--~~g~~~~~ 219 (222)
.+|.++||||+++|...|.+++.+||| .+++++|++|.|+.+++||+||| |||++|||
T Consensus 159 ~dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~ggl~~~~~p~~~~~~vp~~~s~g~~cg~~f~v 224 (224)
T cd01910 159 ADGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEGGLRSFEHPMNKLKAVPRVDSEGEMCGATFKV 224 (224)
T ss_pred CCCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCCCEEEeeCCCchhhcCCcccCcccEecceeeC
Confidence 578999999999999999888999999 77899999999999999999999 99999997
No 2
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR.
Probab=100.00 E-value=2.7e-43 Score=290.77 Aligned_cols=218 Identities=55% Similarity=0.958 Sum_probs=203.4
Q ss_pred eeeeeccccCCchhhhcCCCCCC-C-CcchHHHHHHHhHcCCCCCcceEECCcEEEEEEeCCCCCCCCceEecCCCEEEE
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTP-S-PKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCL 79 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~m~~~l~~RGpd~~~~~~~~~~~Lg~~r~~~~~~~QP~~~~~~~~~lv 79 (222)
++||.+.++.+||+|++|.+... . +++...++++.+....|++..+.+++.+.|++++.+...-.|..+...+++.++
T Consensus 1 LavF~k~va~~PeeL~sp~s~~~s~~~~k~~~ell~~F~s~~p~a~s~~~g~~~~lAys~~~~~~l~pR~F~~~DdIfCi 80 (228)
T PF12481_consen 1 LAVFHKSVAKPPEELNSPASSLPSSKKPKGPEELLKDFVSANPNAFSMNFGDSAALAYSHSNQSSLHPRLFAGVDDIFCI 80 (228)
T ss_pred CcccccccCCCchHhcCcccCCCcccCCCCHHHHHHHHHHhCCCeEEEEcCCCEEEEEecCCCCccccccccccCCEEEE
Confidence 68999999999999999996643 3 688899999999999999999999999999999866555566666666889999
Q ss_pred EcceecChhHHHHHhCCCCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEE
Q 027500 80 FEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWG 159 (222)
Q Consensus 80 ~nG~I~N~~eL~~~lg~~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~ 159 (222)
|-|.|.|...|+++||++++.+|+++++++|+...|+|+++..+++++|+|.|||||||..++++++|||+-|.-|||||
T Consensus 81 F~G~L~Nl~~L~qqYGLsK~~nEa~~vIEAYrtLRDRgPyPadqvv~~L~G~FaFVlyD~~~~tvf~A~d~~G~vpLyWG 160 (228)
T PF12481_consen 81 FLGSLENLCSLRQQYGLSKGANEAMFVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDSKTGTVFVARDSDGSVPLYWG 160 (228)
T ss_pred EecchhhHHHHHHHhCcCcCcchhhhHHHHHHHhhccCCCChHHHHHhccCceEEEEEecCCCcEEEeecCCCCcceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCEEEEEechhhHhhhccccceecCC------CCCeEEEeCCCCcccccCCCccc--ccCceEEe
Q 027500 160 ITADGHVAFADDADLLKGACGKSLASFPQ------VGGLRSFENPKNKITAVPAAEEE--IWGATFKV 219 (222)
Q Consensus 160 ~~~~~~~~faSe~~aL~~~~~~~~~~~pp------~~~~~~~~~~~~~~~~~~r~~s~--~~g~~~~~ 219 (222)
.+.||.++||++...|...|.++..+||+ .++|++|+||.++++++||+||| |||++|||
T Consensus 161 i~~DGslv~Sdd~~~ik~~C~kS~ApFP~Gc~f~S~~Gl~sfehP~nk~k~~prvDseG~~cGa~FkV 228 (228)
T PF12481_consen 161 IAADGSLVFSDDLELIKEGCGKSFAPFPAGCFFSSEGGLRSFEHPKNKVKAMPRVDSEGQMCGATFKV 228 (228)
T ss_pred EeCCCCEEEcCCHHHHHhhhhhccCCCCcceEEEecCceEeecCCcccccccccccCcccCcceeeeC
Confidence 99889999999999999999999999999 78899999999999999999999 99999997
No 3
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=2.3e-38 Score=299.61 Aligned_cols=182 Identities=25% Similarity=0.384 Sum_probs=155.1
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEeC---CCCCCCCceEecCCCEE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~Lg~~r~---~~~~~~QP~~~~~~~~~ 77 (222)
||||+|....... .......+.+|++.|+|||||+.+++..++++|||+|+ +...+.||+.+.+++++
T Consensus 1 MCGI~g~~~~~~~---------~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~ 71 (578)
T PLN02549 1 MCGILAVLGCSDD---------SQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIV 71 (578)
T ss_pred CCcEEEEEeCCCC---------cchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEE
Confidence 9999998721110 00123567789999999999999999988899999993 34568999998888899
Q ss_pred EEEcceecChhHHHHHhC-C---CCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCC
Q 027500 78 CLFEGALDNLGSLRQQYG-L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (222)
Q Consensus 78 lv~nG~I~N~~eL~~~lg-~---~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (222)
+++||+|||+.+|+++|. + +.+|+|++ +++|++|| .+++++|+|+|||++||..++++++||||+|+
T Consensus 72 lv~NGEIyN~~eLr~~L~~~~f~t~sD~Evi--l~ly~~~G-------~~~~~~L~G~FAf~i~D~~~~~l~~aRD~~Gi 142 (578)
T PLN02549 72 VTANGEIYNHKELREKLKLHKFRTGSDCEVI--AHLYEEHG-------EEFVDMLDGMFSFVLLDTRDNSFIAARDHIGI 142 (578)
T ss_pred EEEEEEEEcHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHH-------HHHHHhCCCceEEEEEECCCCEEEEEECCCCC
Confidence 999999999999999984 2 67788876 79999999 79999999999999999989999999999999
Q ss_pred ccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCeEEEeCCCCc
Q 027500 154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGLRSFENPKNK 201 (222)
Q Consensus 154 rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~~~~~~~~~~ 201 (222)
|||||+...++.++||||+++|...|. .+.+||| .+++++|..+.|.
T Consensus 143 kPLyyg~~~~g~~~fASE~KaL~~~~~-~I~~lpPGh~l~~~~~~~~~y~~~~~~ 196 (578)
T PLN02549 143 TPLYIGWGLDGSVWFASEMKALCDDCE-RFEEFPPGHYYSSKAGGFRRWYNPPWF 196 (578)
T ss_pred CCeEEEEecCCeEEEEecHHHHHHHhC-CEEEeCCCeEEEEcCCCEEEEEecccC
Confidence 999999875578999999999999876 4999999 4558888887764
No 4
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=100.00 E-value=3.8e-38 Score=297.31 Aligned_cols=181 Identities=22% Similarity=0.380 Sum_probs=153.6
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEeC---CCCCCCCceEecCCCEE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~Lg~~r~---~~~~~~QP~~~~~~~~~ 77 (222)
||||+|....... ....+..+.+|+++|.|||||+.+++..++++|||+|+ +...+.||+.+.++.++
T Consensus 1 MCGI~g~~~~~~~---------~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~ 71 (554)
T PRK09431 1 MCGIFGILDIKTD---------ADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHV 71 (554)
T ss_pred CceEEEEEcCCCc---------chhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEE
Confidence 9999998621111 00113567899999999999999999999999999993 34568999998888999
Q ss_pred EEEcceecChhHHHHHhC--C---CCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCC
Q 027500 78 CLFEGALDNLGSLRQQYG--L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (222)
Q Consensus 78 lv~nG~I~N~~eL~~~lg--~---~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G 152 (222)
+++||||||+.+|+++|. + +.+|+|++ +++|++|| .+++++|+|+|||++||..++++++||||+|
T Consensus 72 lv~NGEIyN~~eLr~~L~~~~~f~t~sD~Evi--l~ly~~~G-------~~~~~~L~G~FAf~i~D~~~~~l~laRD~~G 142 (554)
T PRK09431 72 LAVNGEIYNHQELRAELGDKYAFQTGSDCEVI--LALYQEKG-------PDFLDDLDGMFAFALYDSEKDAYLIARDPIG 142 (554)
T ss_pred EEEEEEEecHHHHHHHHhccCCcCCCCHHHHH--HHHHHHHH-------HHHHHhCCCceEEEEEECCCCEEEEEeCCCC
Confidence 999999999999999883 2 67788876 79999999 8999999999999999999999999999999
Q ss_pred CccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCeEEEeCCCC
Q 027500 153 KVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGLRSFENPKN 200 (222)
Q Consensus 153 ~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~~~~~~~~~ 200 (222)
+|||||+...++.++||||+++|...|. .+..||| .+.+++|..+.|
T Consensus 143 ikPLyy~~~~~~~~~faSE~kaL~~~~~-~I~~lpPGh~l~~~~g~~~~y~~~~~ 196 (554)
T PRK09431 143 IIPLYYGYDEHGNLYFASEMKALVPVCK-TIKEFPPGHYYWSKDGEFVRYYQRDW 196 (554)
T ss_pred CcceEEEEeCCCeEEEecchHHHHHhcC-CEEEECCCeEEEECCCcEEEecCCCc
Confidence 9999999974478999999999999876 4999999 334777777665
No 5
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=100.00 E-value=6.7e-38 Score=297.07 Aligned_cols=182 Identities=25% Similarity=0.384 Sum_probs=151.5
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC-----CcEEEEEEeC---CCCCCCCceEec
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG-----DNVTLAYTHQ---NESPLRQRSFAV 72 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~-----~~~~Lg~~r~---~~~~~~QP~~~~ 72 (222)
||||+|....... ....+..+.+|+++|+|||||+.+++.. +.++|||+|+ +...+.||+.+.
T Consensus 1 MCGI~gi~~~~~~---------~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~ 71 (586)
T PTZ00077 1 MCGILAIFNSKGE---------RHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDD 71 (586)
T ss_pred CceEEEEEecCCc---------hhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCC
Confidence 9999998621110 0111355678999999999999999974 5689999993 444689999988
Q ss_pred CCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCCCcHH-HHHhcccCceEEEEEECCCCEEE
Q 027500 73 KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPN-HVVGHLSGYFAFIVYDKSTSTLF 145 (222)
Q Consensus 73 ~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~~~~~-~~l~~L~G~fa~vi~d~~~~~l~ 145 (222)
+++++++|||||||+.+|+++| |+ +.+|+|++ +++|++|| . +++++|+|+|||++||..+++++
T Consensus 72 d~~~~lv~NGEIYN~~eLr~~L~~~g~~f~t~sD~Evi--l~ly~~~G-------~~~~l~~L~G~FAf~i~D~~~~~l~ 142 (586)
T PTZ00077 72 DETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEII--GHLYKEYG-------PKDFWNHLDGMFATVIYDMKTNTFF 142 (586)
T ss_pred CCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhC-------HHHHHHhcCCCEEEEEEECCCCEEE
Confidence 8899999999999999999998 33 67787876 79999998 6 89999999999999999999999
Q ss_pred EEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC------C---CCeEEEeCCCCc
Q 027500 146 VASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------V---GGLRSFENPKNK 201 (222)
Q Consensus 146 ~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp------~---~~~~~~~~~~~~ 201 (222)
+||||+|+|||||+...++.++||||+++|...|. .+..||| . ..+++|..+.|+
T Consensus 143 ~aRD~~GikPLyy~~~~~g~~~faSE~kaL~~~~~-~I~~lpPGh~l~~~~~~~~~~~y~~~~~~ 206 (586)
T PTZ00077 143 AARDHIGIIPLYIGYAKDGSIWFSSELKALHDQCV-EVKQFPPGHYYDQTKEKGEFVRYYNPNWH 206 (586)
T ss_pred EEECCCCCcCeEEEEecCCeEEEEecHHHHHHhcC-CEEEeCCCcEEEecCCcceeEEecCCccc
Confidence 99999999999999854578999999999998875 4999999 2 346777777664
No 6
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-37 Score=287.39 Aligned_cols=180 Identities=26% Similarity=0.400 Sum_probs=153.2
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEeC---CCCCCCCceEecCCCEE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~Lg~~r~---~~~~~~QP~~~~~~~~~ 77 (222)
||||+|.-... . . +. ....+.+|++.|.|||||..++|...+.++||+|+ +...+.||+...+++++
T Consensus 1 MCGI~g~~~~~-~--~------~~-~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~ 70 (542)
T COG0367 1 MCGIAGILNFK-N--L------ID-AKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYA 70 (542)
T ss_pred CCceeeeeccc-c--c------cc-chHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEE
Confidence 99999997432 1 0 01 15678899999999999999999999999999993 44457899988667799
Q ss_pred EEEcceecChhHHHHHhC---C---CCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCC
Q 027500 78 CLFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQF 151 (222)
Q Consensus 78 lv~nG~I~N~~eL~~~lg---~---~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~ 151 (222)
++|||||||+.+|+++|. + +.+|+|++ +++|++|| .+++++|+|+|||++||..+++|+++|||+
T Consensus 71 l~~NGEIYN~~elr~~l~~~g~~f~t~sDtEvi--l~~y~~~g-------~~~~~~l~G~fAfai~d~~~~~l~laRD~~ 141 (542)
T COG0367 71 IVYNGEIYNVEELRKELREAGYEFRTYSDTEVI--LTLYEEWG-------EDCVEHLNGMFAFAIYDETRQKLFLARDPF 141 (542)
T ss_pred EEECCEeeeHHHHHHHHHhcCceeccccchHHH--HHHHHHHH-------HHHHHHhccceEEEEEECCCCEEEEEecCC
Confidence 999999999999999984 3 78888887 79999999 889999999999999999999999999999
Q ss_pred CCccEEEEEecCCEEEEEechhhHhhh-----ccccceecCC-------CCC-eEEEeCCCCc
Q 027500 152 GKVPLYWGITADGHVAFADDADLLKGA-----CGKSLASFPQ-------VGG-LRSFENPKNK 201 (222)
Q Consensus 152 G~rPLyy~~~~~~~~~faSe~~aL~~~-----~~~~~~~~pp-------~~~-~~~~~~~~~~ 201 (222)
|+|||||+..+ +.++||||.|+|..+ +. .+.++|| .++ ..+|..+.++
T Consensus 142 GikPLyy~~~~-~~l~faSE~Kal~~~~~~~~~~-~i~~l~pg~~l~~~~~~~~~~y~~~~~~ 202 (542)
T COG0367 142 GVKPLYYTSKN-ENLAFASEIKALLAHPVVRFLR-DIKELPPGHLLEFTDGGLIRRYWRLSEK 202 (542)
T ss_pred CccccEEEecC-CceEEEechhhhhhCCcccccC-CeEEcCCCcEEEEcCCCceeeeeccccc
Confidence 99999999984 569999999999998 54 4999999 333 6666665554
No 7
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.8e-35 Score=271.35 Aligned_cols=199 Identities=15% Similarity=0.184 Sum_probs=154.0
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (222)
||||||..-..+ ....+..|+.+|+|||+|+.++.. .+++
T Consensus 1 MCGI~G~~~~~~-------------~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~ 67 (445)
T PRK08525 1 MCAVVGVINSKN-------------AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEI 67 (445)
T ss_pred CceEEEEEcCcc-------------HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcE
Confidence 999999873111 134556899999999999998755 2358
Q ss_pred EEEEEeCC-----CCCCCCceEe--cCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC-C
Q 027500 54 TLAYTHQN-----ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (222)
Q Consensus 54 ~Lg~~r~~-----~~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~-~ 119 (222)
+|||+|+. ...+.||+.+ .+++++++|||+|||+.+|+++| |+ +.+|+|++ +++|.+++.... +
T Consensus 68 ~iGH~R~at~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi--~~l~~~~~~~~~~e 145 (445)
T PRK08525 68 AIGHNRYSTAGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENL--IHLIARSKKESLKD 145 (445)
T ss_pred EEeecccccCCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 99999932 2367999987 45789999999999999999988 43 67888876 789987752111 3
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC------C---C
Q 027500 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ------V---G 190 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp------~---~ 190 (222)
++.++++.|+|+|||+++++ ++++++||++|+|||||+...++.++||||.+||.....+.+++++| + +
T Consensus 146 a~~~~~~~L~G~fa~vi~~~--~~l~~~RD~~GirPL~~g~~~~~~~~~ASE~~al~~~g~~~~~~~~pGe~v~i~~~~~ 223 (445)
T PRK08525 146 RIIEALKKIIGAYCLVLLSR--SKMFAIRDPHGVRPLSLGRLKDGGYIVASETCAFDLIGAEFIRDVKPGEMLIFEQGND 223 (445)
T ss_pred HHHHHHHhcCCceEEEEEeC--CEEEEEECCCCCCCeEEEEecCCEEEEEECHHHhhccCCcEEEEeCCCeEEEEEcCCC
Confidence 45789999999999999995 78999999999999999986446799999999997776667888888 2 2
Q ss_pred CeEEEeC--CCC-----cccccCCCcccccCce
Q 027500 191 GLRSFEN--PKN-----KITAVPAAEEEIWGAT 216 (222)
Q Consensus 191 ~~~~~~~--~~~-----~~~~~~r~~s~~~g~~ 216 (222)
+++++.. ... +.=|+.||||.|+|.+
T Consensus 224 ~~~~~~~~~~~~~~c~fe~iY~~rpds~~~g~~ 256 (445)
T PRK08525 224 EFESIQLFEPTPRICAFEYIYFARPDSIVFGKN 256 (445)
T ss_pred ceEEEEecCCCCccceeEeeeecCCCceECCEE
Confidence 3544332 111 1228999999999975
No 8
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.6e-35 Score=271.60 Aligned_cols=199 Identities=16% Similarity=0.143 Sum_probs=156.9
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (222)
||||||...... .......++.+|+|||+|+.++.. .+++
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~ 77 (475)
T PRK07631 11 ECGVFGIWGHEE-------------AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKA 77 (475)
T ss_pred CCcEEEEECCch-------------hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCE
Confidence 999999973211 134455789999999999998652 2568
Q ss_pred EEEEEeCC-----CCCCCCceE--ecCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC-C
Q 027500 54 TLAYTHQN-----ESPLRQRSF--AVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (222)
Q Consensus 54 ~Lg~~r~~-----~~~~~QP~~--~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~-~ 119 (222)
+|||+|.. ...+.||+. +.+++++++|||+|+|+.+|+++| |+ +.+|+|++ +++|.+++.... +
T Consensus 78 gIGH~RysT~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi--~~Li~~~~~~~~~e 155 (475)
T PRK07631 78 AIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVL--AHLIKRSGAPTLKE 155 (475)
T ss_pred EEEEeeccccCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 99999932 235799996 345789999999999999999998 44 67788876 799988763221 3
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCe
Q 027500 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGL 192 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~ 192 (222)
++.++++.|+|+|||+++|. ++++++|||+|+|||||+.. ++.++||||.+||...+.+.++++|| .+++
T Consensus 156 ai~~~~~~l~G~yalvi~~~--~~l~aaRDp~GirPL~~G~~-~~~~~~ASE~~Al~~~g~~~ir~v~PGeiv~i~~~g~ 232 (475)
T PRK07631 156 QIKNALSMLKGAYAFLLMTE--TELYVALDPNGLRPLSIGRL-GDAYVVASETCAFDVIGATYEREVEPGELLIINDEGM 232 (475)
T ss_pred HHHHHHHhCCCCceeeEEeC--CEEEEEECCCCCCCEEEEEe-CCEEEEEeChHHHhhcCcceEEEcCCCeEEEEECCcE
Confidence 55789999999999999995 67999999999999999998 46799999999998888777899999 4556
Q ss_pred EEEeCCC-Cccc-------ccCCCcccccCceE
Q 027500 193 RSFENPK-NKIT-------AVPAAEEEIWGATF 217 (222)
Q Consensus 193 ~~~~~~~-~~~~-------~~~r~~s~~~g~~~ 217 (222)
.++.... .+.+ ||.||||.|.|.+=
T Consensus 233 ~~~~~~~~~~~~~C~fE~iYfarpdS~~~g~~v 265 (475)
T PRK07631 233 RSERFAPNQNRSICSMEYIYFARPDSNVDGINV 265 (475)
T ss_pred EEEecCCCCCcccceEEEEEeecCCcccCCeEH
Confidence 6654321 2212 99999999999763
No 9
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=100.00 E-value=5.4e-35 Score=278.08 Aligned_cols=159 Identities=23% Similarity=0.385 Sum_probs=136.9
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEeC---CC-CCCCCceEecCCCE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NE-SPLRQRSFAVKDEI 76 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~Lg~~r~---~~-~~~~QP~~~~~~~~ 76 (222)
||||+|....... ......+..|+++|+|||||+.++|..++++|||+|. +. ..+.||+.++++++
T Consensus 1 McGI~G~~~~~~~----------~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~ 70 (589)
T TIGR03104 1 MCGICGEIRFDGQ----------APDVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGL 70 (589)
T ss_pred CcEEEEEEecCCC----------cchHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCE
Confidence 9999998621111 0123567899999999999999999999999999993 22 35789999888889
Q ss_pred EEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcC
Q 027500 77 FCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQ 150 (222)
Q Consensus 77 ~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~ 150 (222)
+++|||+|||+.+|+++| |+ +.+|+|++ +++|++|| .+++++|+|+|||++||..+++++++|||
T Consensus 71 ~~v~nGeiyN~~eL~~~l~~~g~~f~~~sD~Evi--l~~y~~~G-------~~~~~~l~G~fa~~i~d~~~~~l~laRD~ 141 (589)
T TIGR03104 71 ALVFNGCIYNYRELRAELEALGYRFFSDGDTEVI--LKAYHAWG-------RDCVSRFNGMFAFAIWERDSGRLLLARDR 141 (589)
T ss_pred EEEECCEecCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHH-------HHHHHHhhcceEEEEEeCCCCEEEEEecC
Confidence 999999999999999988 43 66777776 79999999 89999999999999999999999999999
Q ss_pred CCCccEEEEEecCCEEEEEechhhHhhhc
Q 027500 151 FGKVPLYWGITADGHVAFADDADLLKGAC 179 (222)
Q Consensus 151 ~G~rPLyy~~~~~~~~~faSe~~aL~~~~ 179 (222)
+|+|||||+.. ++.++||||+++|+..+
T Consensus 142 ~G~kPLyy~~~-~~~~~faSe~kaLl~~~ 169 (589)
T TIGR03104 142 LGIKPLYYAED-AGRLRFASSLPALLAAG 169 (589)
T ss_pred CCCCCeEEEEe-CCEEEEEeCHHHHHhCC
Confidence 99999999997 57899999999997653
No 10
>cd03766 Gn_AT_II_novel Gn_AT_II_novel. This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
Probab=100.00 E-value=1.2e-34 Score=238.32 Aligned_cols=170 Identities=18% Similarity=0.239 Sum_probs=132.9
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC----CcEEEEEEeC---CCCCCCCceEecC
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----DNVTLAYTHQ---NESPLRQRSFAVK 73 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----~~~~Lg~~r~---~~~~~~QP~~~~~ 73 (222)
||||++....... .......+.+|+++|+|||||+.+++.. ..+.++|+|+ +...+.||+...+
T Consensus 1 MCGI~~~~~~~~~---------~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~ 71 (181)
T cd03766 1 MCGILCSVSPSGP---------HINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQS 71 (181)
T ss_pred CCcEEEEEeCCCC---------cccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCC
Confidence 9999998731111 0002356789999999999999988775 4589999983 3346799999877
Q ss_pred CCEEEEEcceecChhHHHHHhCCCCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCC
Q 027500 74 DEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (222)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~~lg~~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (222)
++++++|||+|||+.+|++ +.+|+|++ +++|++|+.. .+++.++++.|+|+|||++||..+++++++|||+|+
T Consensus 72 ~~~~lv~NGeIyN~~~l~~----s~sDtEvi--~~l~~~~g~~-~~~i~~~~~~L~G~fA~vi~d~~~~~l~~aRD~~G~ 144 (181)
T cd03766 72 TGNVLQWNGELYNIDGVED----EENDTEVI--FELLANCSSE-SQDILDVLSSIEGPFAFIYYDASENKLYFGRDCLGR 144 (181)
T ss_pred CCEEEEECCEEECcccccC----CCCHHHHH--HHHHHHHhhh-HHHHHHHHHhcccceEEEEEeCCCCEEEEEECCCCC
Confidence 7899999999999999975 56788876 7999988721 123458999999999999999989999999999999
Q ss_pred ccEEEEEec-CCEEEEEechhhHhhhccccceecCCC
Q 027500 154 VPLYWGITA-DGHVAFADDADLLKGACGKSLASFPQV 189 (222)
Q Consensus 154 rPLyy~~~~-~~~~~faSe~~aL~~~~~~~~~~~pp~ 189 (222)
|||||+... ++.++|||+..... .....++||.
T Consensus 145 rPL~y~~~~~~~~l~~aS~~~~~~---~~~~~e~~~~ 178 (181)
T cd03766 145 RSLLYKLDPNGFELSISSVSGSSS---GSGFQEVLAG 178 (181)
T ss_pred cCcEEEeeCCCCcEEEEEccCCCC---CCceEECCCC
Confidence 999999974 57899999975331 1246666663
No 11
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.7e-34 Score=266.23 Aligned_cols=202 Identities=14% Similarity=0.137 Sum_probs=157.6
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC----------------------------Cc
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DN 52 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----------------------------~~ 52 (222)
||||||.....+ ....+..++.+|+|||+|+.++... ++
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~ 77 (484)
T PRK07272 11 ECGVFGIWGHPD-------------AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQ 77 (484)
T ss_pred cCeEEEEECCcc-------------HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCc
Confidence 999999973221 1345668899999999999986541 35
Q ss_pred EEEEEEeCC-----CCCCCCceEe--cCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC-
Q 027500 53 VTLAYTHQN-----ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP- 118 (222)
Q Consensus 53 ~~Lg~~r~~-----~~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~- 118 (222)
++|||+|.. ...+.||+.. .+++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++.+++....
T Consensus 78 ~~IGH~RysT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI--~~Li~~~~~~~~~ 155 (484)
T PRK07272 78 AAIGHVRYATAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEIL--MHLIRRSHNPTFM 155 (484)
T ss_pred EEEEEeeccccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHHHcCCCHH
Confidence 899999932 2357999976 35789999999999999999998 43 67888876 788887642111
Q ss_pred CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCC
Q 027500 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGG 191 (222)
Q Consensus 119 ~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~ 191 (222)
+++.++++.|+|+|||++++. ++|+++|||+|+|||||+..+++.++||||.+||...+.+.++.++| .++
T Consensus 156 eai~~~~~~l~G~ya~~i~~~--~~l~a~RDp~GirPL~~G~~~~~~~~~ASE~~Al~~ig~~~ir~l~PGEiv~i~~~g 233 (484)
T PRK07272 156 GKLKEALNTVKGGFAYLLLTE--DKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVRDVQPGEIVIIDDEG 233 (484)
T ss_pred HHHHHHHHHccCceeEEEEEC--CEEEEEECCCCCCcEEEEEecCCEEEEEECHHHHhccCCceEEEcCCCeEEEEECCc
Confidence 356789999999999999985 78999999999999999986455799999999998887777888999 455
Q ss_pred eEEEe--CCCCccc------ccCCCcccccCceEEe
Q 027500 192 LRSFE--NPKNKIT------AVPAAEEEIWGATFKV 219 (222)
Q Consensus 192 ~~~~~--~~~~~~~------~~~r~~s~~~g~~~~~ 219 (222)
++++. .+..... ||.||||.|.|.+|+.
T Consensus 234 ~~~~~~~~~~~~~~C~FE~vYfarpds~i~g~~v~~ 269 (484)
T PRK07272 234 IQYDSYTTDTQLAICSMEYIYFARPDSTIHGVNVHT 269 (484)
T ss_pred eEEEEecCCccccccchhhhhhcCCccccCCEEHHH
Confidence 55543 2221111 9999999999988753
No 12
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=9e-34 Score=262.36 Aligned_cols=199 Identities=16% Similarity=0.155 Sum_probs=156.2
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (222)
||||||..-... ....+..++.+|+|||+|+.++.. .+++
T Consensus 11 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~ 77 (471)
T PRK06781 11 ECGVFGIWGHEN-------------AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKS 77 (471)
T ss_pred cCeEEEEEcCcc-------------HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCE
Confidence 999999873211 134555799999999999998752 2457
Q ss_pred EEEEEeC---C--CCCCCCceEe--cCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC-C
Q 027500 54 TLAYTHQ---N--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (222)
Q Consensus 54 ~Lg~~r~---~--~~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~-~ 119 (222)
+|||+|. + ...+.||+.. .+++++++|||+|+|+.+|+++| |. +.+|+|++ ++++.+++.... +
T Consensus 78 ~IGHvRyaT~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI--~~Li~~~~~~~~~e 155 (471)
T PRK06781 78 AIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVL--LHLIKRSTKDSLIE 155 (471)
T ss_pred EEEEeEcccCCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHcCCCHHH
Confidence 8999993 1 2367899964 35789999999999999999998 33 67788876 788987752222 4
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCe
Q 027500 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGL 192 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~ 192 (222)
++.++++.|+|+|||++++. ++++++||++|+|||||+.. ++.++||||.+||.....+.++++|| .+++
T Consensus 156 ai~~~~~~l~G~ya~vi~~~--~~l~aaRD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~ir~v~pGeiv~i~~~g~ 232 (471)
T PRK06781 156 SVKEALNKVKGAFAYLLLTG--NEMIVALDPNGFRPLSIGKM-GDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGI 232 (471)
T ss_pred HHHHHHHhCCCcEEEEEEEC--CEEEEEECCCCCCCeEEEEE-CCEEEEEECchHhhhcCCcEEEEeCCCEEEEEECCce
Confidence 56789999999999999995 78999999999999999998 46799999999999877777899999 4556
Q ss_pred EEEeCCCC-ccc-------ccCCCcccccCceE
Q 027500 193 RSFENPKN-KIT-------AVPAAEEEIWGATF 217 (222)
Q Consensus 193 ~~~~~~~~-~~~-------~~~r~~s~~~g~~~ 217 (222)
+.+..+.. +.+ ||.||||.|+|.+=
T Consensus 233 ~~~~~~~~~~~~~C~fE~vYfarpds~~~g~~v 265 (471)
T PRK06781 233 HVDRFTNEVDHAICSMEYIYFARPDSNIAGINV 265 (471)
T ss_pred EEEecCcCcccccceEEEEEecCCCceeCCEEH
Confidence 66543322 212 89999999999763
No 13
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.1e-33 Score=261.76 Aligned_cols=198 Identities=14% Similarity=0.116 Sum_probs=153.9
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE--------------------------CCcEE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--------------------------GDNVT 54 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~--------------------------~~~~~ 54 (222)
||||||...... ....+..++.+|+|||+|+.++.. .++++
T Consensus 19 mCGI~G~~~~~~-------------~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~g 85 (474)
T PRK06388 19 DCAVVGFKGGIN-------------AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVG 85 (474)
T ss_pred CCeEEEEECCcc-------------hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEE
Confidence 999999873211 135567899999999999998764 23579
Q ss_pred EEEEeC---C--CCCCCCceEe--cCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhh-ccCC-C
Q 027500 55 LAYTHQ---N--ESPLRQRSFA--VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALR-DRAP-Y 119 (222)
Q Consensus 55 Lg~~r~---~--~~~~~QP~~~--~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g-~~g~-~ 119 (222)
|||+|. + ...+.||+.. ..++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++.+.. ..+. +
T Consensus 86 IGH~RyaT~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi--~~li~~~~~~~~~~e 163 (474)
T PRK06388 86 VGHTRYSTAGSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVM--LAELSRNISKYGLKE 163 (474)
T ss_pred EeeeeeeecCCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHH--HHHHHHHHhcCCHHH
Confidence 999993 2 2367999973 34789999999999999999998 44 77888876 67775421 1122 3
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCe
Q 027500 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGL 192 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~ 192 (222)
++.+++++|+|+|||++++. ++|+++||++|+|||||+.. ++.++||||.+||.....+.+++++| .+++
T Consensus 164 ai~~~~~~l~G~ya~vi~~~--~~l~a~RDp~GiRPL~~G~~-~~~~~~ASE~~Al~~~~~~~i~~l~PGeiv~i~~~g~ 240 (474)
T PRK06388 164 GFERSMERLRGAYACALMIN--DRLYAIRDPNGIRPLVLGKN-FDGYIIASESCAIDALSGTTIKNVEPGEVVEVFDNGY 240 (474)
T ss_pred HHHHHHHhccCceeEEEEEC--CEEEEEECCCCCCceEEEec-CCEEEEEEChHHHHhccCcEEEEeCCCEEEEEECCce
Confidence 55789999999999999974 78999999999999999997 46799999999999988777999999 4455
Q ss_pred EEEeC-CCCccc-------ccCCCcccccCce
Q 027500 193 RSFEN-PKNKIT-------AVPAAEEEIWGAT 216 (222)
Q Consensus 193 ~~~~~-~~~~~~-------~~~r~~s~~~g~~ 216 (222)
+++.. +..+.+ ||.||||.|+|.+
T Consensus 241 ~~~~~~~~~~~~~C~fE~iYfarpds~~~g~~ 272 (474)
T PRK06388 241 KTIFKLDGDKVAHCMFEYVYFSRPDSIIDGIN 272 (474)
T ss_pred EEEEecCCCccccceEEEEeecCCccccCCcH
Confidence 44433 211112 9999999999975
No 14
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type. Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
Probab=100.00 E-value=1.3e-33 Score=238.15 Aligned_cols=159 Identities=25% Similarity=0.420 Sum_probs=136.0
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEeC---CCCCCCCceEecCCCEEE
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIFC 78 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~Lg~~r~---~~~~~~QP~~~~~~~~~l 78 (222)
|||+|....... ......+..|+.+|+|||||+.+++..++++|||+|. +...+.||+...++++++
T Consensus 1 cGI~g~~~~~~~----------~~~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~ 70 (220)
T cd00712 1 CGIAGIIGLDGA----------SVDRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVL 70 (220)
T ss_pred CeEEEEEeCCCC----------cchHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEE
Confidence 899998632110 1124677899999999999999999999999999993 223689999988789999
Q ss_pred EEcceecChhHHHHHhC---C---CCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCC
Q 027500 79 LFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (222)
Q Consensus 79 v~nG~I~N~~eL~~~lg---~---~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G 152 (222)
++||+|||+.+|+++|+ . +.+|+|++ +++|++|| .++++.|+|+|||++||.++++++++||++|
T Consensus 71 ~~nG~i~N~~~L~~~l~~~~~~~~~~sD~e~l--~~~~~~~g-------~~~~~~l~G~fa~vi~d~~~~~l~~~rD~~G 141 (220)
T cd00712 71 VFNGEIYNYRELRAELEALGHRFRTHSDTEVI--LHLYEEWG-------EDCLERLNGMFAFALWDKRKRRLFLARDRFG 141 (220)
T ss_pred EEEEEEeCHHHHHHHHHhcCCcCCCCChHHHH--HHHHHHHh-------HHHHHHhhheEEEEEEECCCCEEEEEECCCC
Confidence 99999999999999883 2 55676765 79999998 8999999999999999998999999999999
Q ss_pred CccEEEEEecCCEEEEEechhhHhhhcc
Q 027500 153 KVPLYWGITADGHVAFADDADLLKGACG 180 (222)
Q Consensus 153 ~rPLyy~~~~~~~~~faSe~~aL~~~~~ 180 (222)
.|||||+.. ++.++||||+++|...+.
T Consensus 142 ~~pLy~~~~-~~~~~~aSe~~~l~~~~~ 168 (220)
T cd00712 142 IKPLYYGRD-GGGLAFASELKALLALPG 168 (220)
T ss_pred CEeeEEEEE-CCEEEEEcchHHHHhcCC
Confidence 999999998 468999999999988765
No 15
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=100.00 E-value=7.6e-34 Score=272.06 Aligned_cols=161 Identities=25% Similarity=0.409 Sum_probs=137.1
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEeC---CCCCCCCceEecCCCEE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~Lg~~r~---~~~~~~QP~~~~~~~~~ 77 (222)
||||+|....... .+.....+..|+++|.|||||+.++|..++++|||+|. +...+.||+.+.+++++
T Consensus 1 McGI~G~~~~~~~---------~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~ 71 (628)
T TIGR03108 1 MCGITGIFDLTGQ---------RPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVV 71 (628)
T ss_pred CCEEEEEEECCCC---------ccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEE
Confidence 9999998621111 01123567889999999999999999999999999993 33457899998888999
Q ss_pred EEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCC
Q 027500 78 CLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQF 151 (222)
Q Consensus 78 lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~ 151 (222)
++|||+|||+.+|+++| |+ +.+|+|++ +++|++|| .+++++|+|+|||++||..+++++++||++
T Consensus 72 lv~nGei~N~~eL~~~l~~~g~~~~~~sD~Evi--~~~~~~~g-------~~~~~~l~G~fa~~~~d~~~~~l~~~rD~~ 142 (628)
T TIGR03108 72 VVFNGEIYNFQELVAELQALGHVFRTRSDTEVI--VHAWEEWG-------EACVERFRGMFAFALWDRNQETLFLARDRL 142 (628)
T ss_pred EEECCeECCHHHHHHHHHhcCCccCCCChHHHH--HHHHHHHH-------HHHHHHcCCCEEEEEEECCCCEEEEEECCC
Confidence 99999999999999987 43 66788876 79999999 899999999999999999999999999999
Q ss_pred CCccEEEEEecCCEEEEEechhhHhhhc
Q 027500 152 GKVPLYWGITADGHVAFADDADLLKGAC 179 (222)
Q Consensus 152 G~rPLyy~~~~~~~~~faSe~~aL~~~~ 179 (222)
|++||||+...++.++||||+++|+..+
T Consensus 143 G~~PLyy~~~~~~~~~faSe~~al~~~~ 170 (628)
T TIGR03108 143 GIKPLYYALLADGWFIFGSELKALTAHP 170 (628)
T ss_pred CCcceEEEEeCCCEEEEEecHHHHHhCC
Confidence 9999999985456799999999987653
No 16
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.7e-33 Score=260.31 Aligned_cols=200 Identities=17% Similarity=0.178 Sum_probs=153.9
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (222)
||||||...... .....+..++.+|+|||+|+.++.. .+++
T Consensus 33 mCGI~Gi~~~~~------------~~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i 100 (500)
T PRK07349 33 ACGVFGVYAPGE------------EVAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDL 100 (500)
T ss_pred CCeEEEEECCCc------------CHHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCE
Confidence 999999973110 1134556799999999999998743 2357
Q ss_pred EEEEEeCC-----CCCCCCceEec--CCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC--
Q 027500 54 TLAYTHQN-----ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-- 118 (222)
Q Consensus 54 ~Lg~~r~~-----~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~-- 118 (222)
+|||+|.. ...+.||+... .++++++|||+|+|+.+|+++| |+ +.+|+|++ +++|.+...++.
T Consensus 101 ~IGHvRysT~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi--~~li~~~~~~~~~~ 178 (500)
T PRK07349 101 AVGHTRYSTTGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMI--AFAIAQAVDAGKDW 178 (500)
T ss_pred EEEEeecccCCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHHhcCCCH
Confidence 99999932 23579999864 4789999999999999999998 43 67888876 688866432221
Q ss_pred -CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEec---CCEEEEEechhhHhhhccccceecCC------
Q 027500 119 -YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA---DGHVAFADDADLLKGACGKSLASFPQ------ 188 (222)
Q Consensus 119 -~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~---~~~~~faSe~~aL~~~~~~~~~~~pp------ 188 (222)
+++.++++.|+|+|||++++. ++|+++||++|+|||||+... ++.++||||.+||.....+.+++++|
T Consensus 179 ~eai~~~~~~l~G~ya~vi~~~--~~l~aaRDp~GiRPL~~G~~~~~~~~~~~~ASE~~Al~~lg~~~ir~v~PGeiv~i 256 (500)
T PRK07349 179 LEAAISAFQRCQGAFSLVIGTP--EGLMGVRDPNGIRPLVIGTLGEGGPGRYVLASETCALDIIGAEYLRDVEPGELVWI 256 (500)
T ss_pred HHHHHHHHHHhhhhEEEEEEeC--CEEEEEECCCCCCCeEEEecccCCCCeEEEEeccchhhhcCCceEEEeCCCeEEEE
Confidence 345789999999999999874 789999999999999999852 24799999999998877777999999
Q ss_pred -CCCeEEEeC-CCCccc-------ccCCCcccccCce
Q 027500 189 -VGGLRSFEN-PKNKIT-------AVPAAEEEIWGAT 216 (222)
Q Consensus 189 -~~~~~~~~~-~~~~~~-------~~~r~~s~~~g~~ 216 (222)
.++++++.. +..+.+ ||.||||.|+|.+
T Consensus 257 ~~~g~~~~~~~~~~~~~~C~fE~vYfarpdS~~~g~~ 293 (500)
T PRK07349 257 TEGGLSSFHWAQEPQRKLCIFEMIYFARPDSRMHGES 293 (500)
T ss_pred ECCceEEEecccCCCcceeEEEeeeccCCCCccCCeE
Confidence 456666543 111112 8999999999976
No 17
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=3e-33 Score=260.58 Aligned_cols=200 Identities=17% Similarity=0.177 Sum_probs=154.6
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (222)
||||||..-... .....+..++.+|+|||+|+.++.. .+++
T Consensus 23 mCGI~Gi~~~~~------------~~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i 90 (510)
T PRK07847 23 ECGVFGVWAPGE------------EVAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHV 90 (510)
T ss_pred cCeEEEEECCCc------------CHHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcE
Confidence 999999873110 1134555789999999999998643 2357
Q ss_pred EEEEEeCC-----CCCCCCceEec---CCCEEEEEcceecChhHHHHHh---C-------C-CCCcchHHHHHHHHHHhh
Q 027500 54 TLAYTHQN-----ESPLRQRSFAV---KDEIFCLFEGALDNLGSLRQQY---G-------L-AKSANEVILVIEAYKALR 114 (222)
Q Consensus 54 ~Lg~~r~~-----~~~~~QP~~~~---~~~~~lv~nG~I~N~~eL~~~l---g-------~-~~~d~e~~~~~~~y~~~g 114 (222)
+|||+|.. ...+.||+... .++++++|||+|+|+.+|+++| | . +.+|+|++ ++++.+++
T Consensus 91 ~IGHvR~sT~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI--~~Li~~~~ 168 (510)
T PRK07847 91 AIGHCRYSTTGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLV--TALLAHGA 168 (510)
T ss_pred EEEeccCCcCCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHH--HHHHHHhc
Confidence 99999932 22579999753 5789999999999999999988 4 2 56777876 68888775
Q ss_pred ccCC--CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC----
Q 027500 115 DRAP--YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ---- 188 (222)
Q Consensus 115 ~~g~--~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp---- 188 (222)
..+. +++.++++.|+|+|||+++|. ++|+++||++|+|||||+.. ++.++||||.+||.....+.++++||
T Consensus 169 ~~~~~~eai~~~~~~l~G~yA~vi~d~--~~L~aaRDp~GirPL~~g~~-~~~~~vASE~~AL~~~g~~~ir~v~PGeiv 245 (510)
T PRK07847 169 ADSTLEQAALELLPTVRGAFCLVFMDE--HTLYAARDPQGVRPLVLGRL-ERGWVVASETAALDIVGASFVREIEPGELI 245 (510)
T ss_pred cCCCHHHHHHHHHHHhhhheEEEEEEC--CEEEEEECCCCCCCcEEEEE-CCeEEEEechHHHhccCCcEEEEECcCEEE
Confidence 3221 345689999999999999995 78999999999999999998 46799999999998876567999999
Q ss_pred ---CCCeEEEeCCCCccc-------ccCCCcccccCceE
Q 027500 189 ---VGGLRSFENPKNKIT-------AVPAAEEEIWGATF 217 (222)
Q Consensus 189 ---~~~~~~~~~~~~~~~-------~~~r~~s~~~g~~~ 217 (222)
.++++++.....+.+ ||.||||.|+|.+=
T Consensus 246 ~I~~~gv~~~~~~~~~~~~C~fE~vYfarpdS~~~g~~v 284 (510)
T PRK07847 246 AIDADGLRSTRFAEPTPKGCVFEYVYLARPDTTIAGRSV 284 (510)
T ss_pred EEECCceEEEeccCCCCCCCeEEEEEecCCcceeCCeEH
Confidence 455665443222211 99999999999763
No 18
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.6e-33 Score=258.30 Aligned_cols=198 Identities=17% Similarity=0.169 Sum_probs=153.3
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE----------------------------CCc
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV----------------------------GDN 52 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~----------------------------~~~ 52 (222)
||||||..-... ....+..++.+|+|||+|+.++.. .++
T Consensus 21 mCGI~Gi~~~~~-------------~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~ 87 (479)
T PRK09123 21 ECGVFGILGHPD-------------AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGN 87 (479)
T ss_pred cCeEEEEEcCcc-------------hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCC
Confidence 999999973111 134566799999999999998653 134
Q ss_pred EEEEEEeC---C--CCCCCCceEec--CCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC-
Q 027500 53 VTLAYTHQ---N--ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP- 118 (222)
Q Consensus 53 ~~Lg~~r~---~--~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~- 118 (222)
++|||+|. + ...+.||+... +++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++.+++....
T Consensus 88 ~~IGH~R~sT~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi--~~Li~~~~~~~~~ 165 (479)
T PRK09123 88 RAIGHVRYSTTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVI--LHLIARSRKASFL 165 (479)
T ss_pred EEEEEEecccCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHH--HHHHHHHccCCHH
Confidence 79999993 2 23678999863 5789999999999999999998 33 67788876 688877642111
Q ss_pred CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCC
Q 027500 119 YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGG 191 (222)
Q Consensus 119 ~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~ 191 (222)
+++.++++.|+|+|||++|+. ++++++||++|+|||||+.. ++.++||||.+||.....+.++++|| .++
T Consensus 166 eai~~~~~~L~G~ya~vil~~--~~l~a~RD~~GirPL~~g~~-~~~~~~ASE~~Al~~~g~~~~r~v~pGeiv~i~~~g 242 (479)
T PRK09123 166 DRFIDALRQVEGAYSLVALTN--TKLIGARDPLGIRPLVLGEL-DGSPILASETCALDIIGAEFVRDVEPGELVVIDEDG 242 (479)
T ss_pred HHHHHHHHHhhcceeEEEEEC--CEEEEEECCCCCCceEEEEE-CCEEEEEECchHHhccCCceEEEECCCeEEEEeCCC
Confidence 345789999999999999996 68999999999999999997 46799999999998766667888998 334
Q ss_pred -eEEEeCCCC-ccc-------ccCCCcccccCce
Q 027500 192 -LRSFENPKN-KIT-------AVPAAEEEIWGAT 216 (222)
Q Consensus 192 -~~~~~~~~~-~~~-------~~~r~~s~~~g~~ 216 (222)
+.++..... +.+ |+.||||.|+|.+
T Consensus 243 ~~~~~~~~~~~~~~~C~FE~VYfarPdS~~~g~~ 276 (479)
T PRK09123 243 SIESIKPFPPQPARFCIFEYVYFARPDSVVGGRS 276 (479)
T ss_pred cEEEEEecCCCCCCCChhheEEecCCCceECCeE
Confidence 655443221 111 8999999999976
No 19
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=100.00 E-value=6.2e-33 Score=257.44 Aligned_cols=143 Identities=26% Similarity=0.416 Sum_probs=128.3
Q ss_pred cchHHHHHHHhHcCCCCCcceE-ECCcEEEEEEeC---CCCCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---
Q 027500 27 KTTSTALVDRFLQTNSSAVSVQ-VGDNVTLAYTHQ---NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL--- 96 (222)
Q Consensus 27 ~~~~~~m~~~l~~RGpd~~~~~-~~~~~~Lg~~r~---~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~--- 96 (222)
+..+..|+++|+|||||+.++| ..++++|||+|+ +.....||+.+.+++++++|||+|||+.+|+++| |+
T Consensus 15 ~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~eL~~~l~~~g~~~~ 94 (467)
T TIGR01536 15 DEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQ 94 (467)
T ss_pred HHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHHHHHHHHHhcCCccC
Confidence 3467889999999999999999 888999999993 3344589999888899999999999999999988 33
Q ss_pred CCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHh
Q 027500 97 AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLK 176 (222)
Q Consensus 97 ~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~ 176 (222)
+.+|+|++ +++|++|| .++++.|+|+|||++||..+++++++||++|+|||||+.. ++.++||||+++|.
T Consensus 95 ~~~D~e~i--l~~y~~~g-------~~~~~~l~G~fa~~i~D~~~~~l~laRD~~G~kPLyy~~~-~~~~~faSe~kaL~ 164 (467)
T TIGR01536 95 TDSDTEVI--LHLYEEWG-------EECVDRLDGMFAFALWDSKKGELFLARDRFGIKPLYYAYD-GGQLYFASEIKALL 164 (467)
T ss_pred CCCHHHHH--HHHHHHHH-------HHHHHHcCCcEEEEEEECCCCEEEEEECCCCCcCeEEEEE-CCEEEEEecHHHHH
Confidence 66777776 79999999 8999999999999999999999999999999999999998 57899999999998
Q ss_pred hhc
Q 027500 177 GAC 179 (222)
Q Consensus 177 ~~~ 179 (222)
..+
T Consensus 165 ~~~ 167 (467)
T TIGR01536 165 AHP 167 (467)
T ss_pred hcc
Confidence 765
No 20
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.6e-32 Score=252.39 Aligned_cols=194 Identities=18% Similarity=0.218 Sum_probs=151.0
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE--------------------------CCcEE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--------------------------GDNVT 54 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~--------------------------~~~~~ 54 (222)
||||||..-. . ....+..++.+|+|||+|+.++.. .++++
T Consensus 4 ~CGI~G~~~~-~-------------~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~ 69 (442)
T PRK08341 4 KCGIFAAYSE-N-------------APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLA 69 (442)
T ss_pred ccEEEEEECC-C-------------cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEE
Confidence 8999999731 1 135667899999999999999743 35789
Q ss_pred EEEEeC---CCCCCCCceEec--CCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHH----HHhhccCCC
Q 027500 55 LAYTHQ---NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAY----KALRDRAPY 119 (222)
Q Consensus 55 Lg~~r~---~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y----~~~g~~g~~ 119 (222)
|||+|. +...+.||+... ++.++++|||+|+|+.+|+++| |+ +.+|+|++ ++++ .++++ -.+
T Consensus 70 IGH~R~sT~G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI--~~li~~~~~~~~~-~~~ 146 (442)
T PRK08341 70 IGHVRYSTSGSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELI--GISFLWHYSETGD-EFE 146 (442)
T ss_pred EEEeeccccCCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHH--HHHHHHHHHhcCC-HHH
Confidence 999993 344679999764 3689999999999999999998 43 67888887 3443 33321 013
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCe
Q 027500 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGL 192 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~ 192 (222)
++.+++++|+|+|||++++. ++++++||++|+|||||+.. ++ ++||||.+||...+. .++++|| .+++
T Consensus 147 ai~~~~~~l~G~yal~i~~~--~~l~a~RD~~GirPL~~G~~-~~-~~~ASE~~Al~~~~~-~v~~l~PGeiv~i~~~g~ 221 (442)
T PRK08341 147 AMREVFNEVKGAYSVAILFD--GKIIVARDPVGFRPLSYGEG-DG-HYFASEDSALRMFVN-EIRDVFPGEVFVVSEGEV 221 (442)
T ss_pred HHHHHHHhccCceEEEEEEC--CEEEEEEcCCCceEEEEEEC-CE-EEEEeCcHHHHhhCC-eEEEeCCCEEEEEECCce
Confidence 55678999999999999985 78999999999999999984 44 899999999998875 6899999 4566
Q ss_pred EEEeCCCCc-------ccccCCCcccccCce
Q 027500 193 RSFENPKNK-------ITAVPAAEEEIWGAT 216 (222)
Q Consensus 193 ~~~~~~~~~-------~~~~~r~~s~~~g~~ 216 (222)
+++.....+ .-|+.||||.|.|.+
T Consensus 222 ~~~~~~~~~~~~C~fe~iYfarpds~~~g~~ 252 (442)
T PRK08341 222 ESKVLAREKHHHCVFEYIYFARPDSVIDGVS 252 (442)
T ss_pred EEEeeccCCCccceEEEEEecCCccccCCcC
Confidence 654332222 139999999999974
No 21
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.5e-32 Score=254.66 Aligned_cols=200 Identities=15% Similarity=0.173 Sum_probs=156.3
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (222)
||||||..-..+ .. ....+..++.+|+|||+|+.++.. .+++
T Consensus 14 mCGI~Gi~~~~~-~~----------~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~ 82 (469)
T PRK05793 14 ECGVFGVFSKNN-ID----------VASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNS 82 (469)
T ss_pred CCeEEEEEcCCC-cc----------HHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcE
Confidence 999999973211 00 133455689999999999998752 3458
Q ss_pred EEEEEeCC-----CCCCCCceEec--CCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC-C
Q 027500 54 TLAYTHQN-----ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (222)
Q Consensus 54 ~Lg~~r~~-----~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~-~ 119 (222)
+|||+|.. ...+.||+... +++++++|||+|+|+++|+++| |. +.+|+|++ ++++.+++..+. +
T Consensus 83 ~iGHvR~sT~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi--~~li~~~~~~~~~~ 160 (469)
T PRK05793 83 AIGHVRYSTTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVI--LNLIARSAKKGLEK 160 (469)
T ss_pred EEEEeecccCCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHccCCHHH
Confidence 99999931 23579999864 5789999999999999999988 33 67888876 688887753222 4
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCe
Q 027500 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGL 192 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~ 192 (222)
++.++++.|+|+||+++++. ++++++||++|+|||||+.. ++.++||||.++|.....+.++++|| .+++
T Consensus 161 ai~~~~~~l~G~ya~vi~~~--~~l~a~RD~~GirPL~~g~~-~~~~~vASE~~al~~~g~~~~r~v~pGeiv~i~~~g~ 237 (469)
T PRK05793 161 ALVDAIQAIKGSYALVILTE--DKLIGVRDPHGIRPLCLGKL-GDDYILSSESCALDTIGAEFIRDVEPGEIVIIDEDGI 237 (469)
T ss_pred HHHHHHHHhhhhceEEEEEC--CEEEEEECCCCCCCcEEEEE-CCEEEEEEChHHHhhcCcceEEEeCCCeEEEEECCce
Confidence 56789999999999999985 78999999999999999998 46799999999999877777899999 4556
Q ss_pred EEEeCCC-Cccc-------ccCCCcccccCce
Q 027500 193 RSFENPK-NKIT-------AVPAAEEEIWGAT 216 (222)
Q Consensus 193 ~~~~~~~-~~~~-------~~~r~~s~~~g~~ 216 (222)
+.+.... .+.+ ||.||||.|+|.+
T Consensus 238 ~~~~~~~~~~~~~C~fe~vYfarpds~~~g~~ 269 (469)
T PRK05793 238 KSIKFAEKTKCQTCAFEYIYFARPDSVIDGIS 269 (469)
T ss_pred EEEecCcCccccccEEEEEEeccCCcccCCeE
Confidence 6654322 1212 9999999999976
No 22
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=252.31 Aligned_cols=186 Identities=25% Similarity=0.383 Sum_probs=162.2
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEe---CCCCCCCCceEecCCCEE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTH---QNESPLRQRSFAVKDEIF 77 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~Lg~~r---~~~~~~~QP~~~~~~~~~ 77 (222)
|||||+......|+.. +....++...+.|||||+.+..+.....|||.| .+...+.||++..++.++
T Consensus 1 MCGI~Av~~~~~~~~~----------~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~ 70 (543)
T KOG0571|consen 1 MCGILAVLGHEDSEAK----------KPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYV 70 (543)
T ss_pred CCceeeeecccchhhc----------ChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEE
Confidence 9999999874444332 445557888999999999998887777999999 355678999999888899
Q ss_pred EEEcceecChhHHHHHhC-C---CCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCC
Q 027500 78 CLFEGALDNLGSLRQQYG-L---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (222)
Q Consensus 78 lv~nG~I~N~~eL~~~lg-~---~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (222)
+.+||||||+.+|++.+. + +.+|+|+| +++|.+.|. +++...|+|+|||+++|.+.+++++|||++|+
T Consensus 71 ~~vNGEIYNH~~Lr~~~~~~~~~T~sDcEvI--i~lY~khg~------~~~~~~LDG~Fafvl~d~~~~kv~~aRDpiGv 142 (543)
T KOG0571|consen 71 VTVNGEIYNHKKLREHCKDFEFQTGSDCEVI--IHLYEKHGG------EQAICMLDGVFAFVLLDTKDDKVVAARDPIGV 142 (543)
T ss_pred EEECceeccHHHHHHHhhhcccccCCCceee--eehHhhcCc------hhHHHHhhhheEEEEecCCCCeEEeccCCcCc
Confidence 999999999999998874 3 78999998 799999852 79999999999999999999999999999999
Q ss_pred ccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCeEEEeCCCCccccc
Q 027500 154 VPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGLRSFENPKNKITAV 205 (222)
Q Consensus 154 rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~~~~~~~~~~~~~~ 205 (222)
+||||+++.++.++||||.++|...|++ +..||| .+++++|..|.|.+..+
T Consensus 143 ~~lY~g~~~~gs~~~aSe~k~l~d~C~~-i~~fpPgh~y~~~~~~~~r~f~p~w~~~~~ 200 (543)
T KOG0571|consen 143 TPLYYGWDSDGSVYFASEMKCLEDDCEK-IESFPPGHYYTSKTGKLTRYFNPEWFDENI 200 (543)
T ss_pred eeeEEEecCCCcEEEeeehhhhhhhhhc-eeecCCcceeecccccccCCCCchhhhccC
Confidence 9999999877899999999999999975 999999 77799999999976543
No 23
>PLN02440 amidophosphoribosyltransferase
Probab=100.00 E-value=4.2e-32 Score=252.25 Aligned_cols=199 Identities=17% Similarity=0.157 Sum_probs=152.5
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (222)
||||||..-. + . ....+..|+.+|+|||+|+.++.. .+++
T Consensus 1 MCGI~Gi~~~--~-~----------~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~ 67 (479)
T PLN02440 1 ECGVVGIFGD--P-E----------ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDI 67 (479)
T ss_pred CceEEEEECC--c-c----------HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcE
Confidence 9999999731 1 0 134566899999999999998754 4568
Q ss_pred EEEEEeCC-----CCCCCCceEec--CCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC-C
Q 027500 54 TLAYTHQN-----ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (222)
Q Consensus 54 ~Lg~~r~~-----~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~-~ 119 (222)
+|||+|.. ...+.||+... .++++++|||+|+|+.+|+++| |. +.+|+|++ +++|.++..... +
T Consensus 68 ~IGHvRysT~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi--~~li~~~~~~~~~~ 145 (479)
T PLN02440 68 AIGHVRYSTAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVL--LHLIAISKARPFFS 145 (479)
T ss_pred EEEEEeccccCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhhhhhHHH
Confidence 99999931 24689999853 4679999999999999999988 33 67788876 688876531111 2
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCe
Q 027500 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGL 192 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~ 192 (222)
.+.++++.|+|+||+++||. ++++++||++|+|||||+..+++.++||||.+||.....+.+++++| .+++
T Consensus 146 a~~~~~~~l~G~fa~vi~~~--~~l~a~RD~~G~RPL~~g~~~~~~~~vASE~~al~~~g~~~ir~v~PGeiv~i~~~g~ 223 (479)
T PLN02440 146 RIVDACEKLKGAYSMVFLTE--DKLVAVRDPHGFRPLVMGRRSNGAVVFASETCALDLIGATYEREVNPGEVIVVDKDKG 223 (479)
T ss_pred HHHHHHHHhccceeeeEEEC--CEEEEEECCCCCCceEEEEeCCCEEEEEECchHHhccCCcEEEEeCCCeEEEEECCCc
Confidence 34789999999999999995 57999999999999999986456799999999999887777999999 3443
Q ss_pred EEEe-C-CCCc-------ccccCCCcccccCce
Q 027500 193 RSFE-N-PKNK-------ITAVPAAEEEIWGAT 216 (222)
Q Consensus 193 ~~~~-~-~~~~-------~~~~~r~~s~~~g~~ 216 (222)
.+.. . +..+ .=|+.|+||.|.|..
T Consensus 224 ~~~~~~~~~~~~~~C~fe~vYf~~p~s~~~g~~ 256 (479)
T PLN02440 224 VSSQCLMPHPEPKPCIFEHIYFARPNSIVFGRS 256 (479)
T ss_pred EEEeeccCCCCcccceEEEEeecCCCccccCeE
Confidence 3322 1 1111 118999999988864
No 24
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=100.00 E-value=5.5e-32 Score=252.76 Aligned_cols=202 Identities=17% Similarity=0.187 Sum_probs=153.7
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (222)
||||||....++ ....+..|+.+|+|||+|+.+++. .+++
T Consensus 1 MCGI~Gi~~~~~-------------~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~ 67 (501)
T PRK09246 1 MCGIVGIVGHSP-------------VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNM 67 (501)
T ss_pred CceEEEEEcCcC-------------HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCE
Confidence 999999973211 134566899999999999999876 4678
Q ss_pred EEEEEeC-----CCCCCCCceEe-cCCCEEEEEcceecChhHHHHHh----CC---CCCcchHHHHHHHHHHhhcc--C-
Q 027500 54 TLAYTHQ-----NESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY----GL---AKSANEVILVIEAYKALRDR--A- 117 (222)
Q Consensus 54 ~Lg~~r~-----~~~~~~QP~~~-~~~~~~lv~nG~I~N~~eL~~~l----g~---~~~d~e~~~~~~~y~~~g~~--g- 117 (222)
+|||+|. ....+.||+.. ...+++++|||+|+|+++|+++| +. +.+|+|++ ++++.++... +
T Consensus 68 ~IGHvRysT~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi--~~li~~~l~~~~g~ 145 (501)
T PRK09246 68 GIGHVRYPTAGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVL--LNVFAHELQKFRGL 145 (501)
T ss_pred EEEEEcCCcCCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHH--HHHHHHHHHhcccc
Confidence 9999993 12468999974 34569999999999999999987 22 67888887 6888776321 1
Q ss_pred -------CCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEec---CCEEEEEechhhHhhhccccceecC
Q 027500 118 -------PYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA---DGHVAFADDADLLKGACGKSLASFP 187 (222)
Q Consensus 118 -------~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~---~~~~~faSe~~aL~~~~~~~~~~~p 187 (222)
.+++.++++.|+|+||++++.. .++++++||++|+|||||+..+ ++.++||||.+||.....+.++++|
T Consensus 146 ~~~~~~l~eai~~~~~~l~Gays~v~~~~-~~~l~a~RDp~GirPL~~g~~~~~~~~~~~~ASE~~Al~~~g~~~ir~v~ 224 (501)
T PRK09246 146 PLTPEDIFAAVAAVHRRVRGAYAVVAMII-GHGLVAFRDPHGIRPLVLGKRETEGGTEYMVASESVALDALGFEFVRDVA 224 (501)
T ss_pred ccCccCHHHHHHHHHHhcccceeeEEEec-CCcEEEEECCCCCCCeEEEeecCCCCCEEEEEECHHHHHhCCceEEEEeC
Confidence 1345688999999999998853 4579999999999999999862 3479999999999998777899999
Q ss_pred C-------CCC-eEE--EeC-CCCc-----ccccCCCcccccCce-EE
Q 027500 188 Q-------VGG-LRS--FEN-PKNK-----ITAVPAAEEEIWGAT-FK 218 (222)
Q Consensus 188 p-------~~~-~~~--~~~-~~~~-----~~~~~r~~s~~~g~~-~~ 218 (222)
| .++ ... +.. +.+. .-|+.|+||.|.|.+ |.
T Consensus 225 PGeiv~i~~~g~~~~~~~~~~~~~~~c~fe~vY~~r~ds~i~g~~vy~ 272 (501)
T PRK09246 225 PGEAIYITEDGQLHTRQCAENPKLNPCIFEYVYFARPDSIIDGISVYK 272 (501)
T ss_pred CCeEEEEECCCcEehhhhcCCCCCcceEEEEEEcCCchhhccCeeHHh
Confidence 9 223 321 112 2222 118999999999987 54
No 25
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type. This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
Probab=100.00 E-value=3.9e-31 Score=227.59 Aligned_cols=195 Identities=15% Similarity=0.134 Sum_probs=150.2
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcEE
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNVT 54 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~ 54 (222)
|||+|...... ....+..|++.|+|||+|+.++.. .+.++
T Consensus 1 Cgi~g~~~~~~-------------~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (252)
T cd00715 1 CGVFGIYGAED-------------AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIA 67 (252)
T ss_pred CEEEEEECCcc-------------hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEE
Confidence 99999874111 235566899999999999998754 12468
Q ss_pred EEEEeC---C--CCCCCCceEec--CCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccC-C-C
Q 027500 55 LAYTHQ---N--ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRA-P-Y 119 (222)
Q Consensus 55 Lg~~r~---~--~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g-~-~ 119 (222)
|||+|. + ...+.||+... +++++++|||+|+|+++|+++| +. +.+|+|++ ++++.++++++ . +
T Consensus 68 lgH~R~at~g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi--~~l~~~~~~~~~~~~ 145 (252)
T cd00715 68 IGHVRYSTAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVI--LHLIARSLAKDDLFE 145 (252)
T ss_pred EEEEEcccCCCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHH--HHHHHHhhccCCHHH
Confidence 999993 1 23579999853 4789999999999999999887 22 56788876 68998887431 1 3
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCe
Q 027500 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGL 192 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~ 192 (222)
++.++++.|+|.||++++|. ++++++||++|.+||||+...++.++||||.++|...+.+.+.++|| .+++
T Consensus 146 al~~~~~~l~G~~a~~~~d~--~~l~~~RD~~G~~PL~~~~~~~~~~~vASE~~al~~~~~~~~~~l~pg~~~~i~~~~~ 223 (252)
T cd00715 146 AIIDALERVKGAYSLVIMTA--DGLIAVRDPHGIRPLVLGKLEGDGYVVASESCALDIIGAEFVRDVEPGEIVVIDDDGL 223 (252)
T ss_pred HHHHHHHhccCceEEEEEEC--CEEEEEECCCCCCCeEEEEeCCCeEEEEECHHHhcccCCcEEEEcCCCeEEEEECCce
Confidence 45689999999999999997 89999999999999999997436899999999998865556899999 4455
Q ss_pred EEEeCC--CCccc------ccCCCccccc
Q 027500 193 RSFENP--KNKIT------AVPAAEEEIW 213 (222)
Q Consensus 193 ~~~~~~--~~~~~------~~~r~~s~~~ 213 (222)
..+... ..... |+.|+||+|+
T Consensus 224 ~~~~~~~~~~~~~c~~e~~y~~~~~~~~~ 252 (252)
T cd00715 224 ESSQRAPKPKPAPCIFEYVYFARPDSVID 252 (252)
T ss_pred EEEEecCCCCCCcceEEEEeecCCccccC
Confidence 444332 21111 8999999874
No 26
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type. This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
Probab=99.98 E-value=3.3e-31 Score=223.22 Aligned_cols=165 Identities=19% Similarity=0.228 Sum_probs=132.9
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC---------------------------CcEE
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNVT 54 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~ 54 (222)
|||+|...... ....+..|+.+++|||||+.+++.. +.++
T Consensus 1 CGI~G~~~~~~-------------~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (215)
T cd00714 1 CGIVGYIGKRE-------------AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVG 67 (215)
T ss_pred CEEEEEEcCcc-------------HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEE
Confidence 99999873110 1345668999999999999998763 4579
Q ss_pred EEEEeC---C--CCCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC---Cc
Q 027500 55 LAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---YP 120 (222)
Q Consensus 55 Lg~~r~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~---~~ 120 (222)
|||+|. + ...+.||+...+++++++|||+|||+++|+++| |+ +.+|+|++ +++|.+++..+. ++
T Consensus 68 igH~R~at~g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi--~~l~~~~~~~~~~~~~a 145 (215)
T cd00714 68 IGHTRWATHGEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVI--AHLIEYYYDGGLDLLEA 145 (215)
T ss_pred EEEEEccCCCCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHH--HHHHHHHHhcCCCHHHH
Confidence 999993 2 135789998766789999999999999999988 43 67888876 789988874332 34
Q ss_pred HHHHHhcccCceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceec
Q 027500 121 PNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASF 186 (222)
Q Consensus 121 ~~~~l~~L~G~fa~vi~d~~~-~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~ 186 (222)
+.++++.|+|+|||++||..+ ++++++|| .|||||+.. ++.++||||.++|...+.. +..+
T Consensus 146 i~~~~~~l~G~fa~~~~d~~~~~~l~~~RD---~~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~~ 207 (215)
T cd00714 146 VKKALKRLEGAYALAVISKDEPDEIVAARN---GSPLVIGIG-DGENFVASDAPALLEHTRR-VIYL 207 (215)
T ss_pred HHHHHHHhccceEEEEEEeCCCCEEEEEEC---CCCcEEEEc-CCeEEEEECHHHHHHhcCE-EEEE
Confidence 568999999999999999875 49999999 499999997 5679999999999998864 4444
No 27
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.97 E-value=1.1e-30 Score=240.70 Aligned_cols=198 Identities=18% Similarity=0.157 Sum_probs=153.3
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcEE
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNVT 54 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~ 54 (222)
|||||..-..+ .....+..++.+|+|||+|+.++.. .++++
T Consensus 1 CGI~Gi~~~~~------------~~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~ 68 (442)
T TIGR01134 1 CGVVGIYSQEE------------DAASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVG 68 (442)
T ss_pred CEEEEEEcCCc------------cHHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEE
Confidence 99999863110 0134566799999999999999753 35689
Q ss_pred EEEEeCC-----CCCCCCceEe-cCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC---C
Q 027500 55 LAYTHQN-----ESPLRQRSFA-VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (222)
Q Consensus 55 Lg~~r~~-----~~~~~QP~~~-~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~---~ 119 (222)
|||+|.. ...+.||+.. ..++++++|||+|+|+++|+++| |. +.+|+|++ +++|.+++..+. +
T Consensus 69 IgHvR~aT~G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi--~~li~~~~~~~~~~~~ 146 (442)
T TIGR01134 69 IGHVRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVL--LHLLARERLEEDDLFE 146 (442)
T ss_pred EEEEEecCCCCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhhcccCCHHH
Confidence 9999931 2357999974 33569999999999999999988 32 67788876 788887652111 3
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCe
Q 027500 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGL 192 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~ 192 (222)
++.+++++|+|.|||+++| .++++++||++|.|||||+.. ++.++||||.++|.....+.++++|| .+++
T Consensus 147 ai~~~~~~l~G~falvi~~--~~~L~a~RD~~G~rPL~~g~~-~~~~~~ASE~~al~~~g~~~~r~v~pGeiv~i~~~~~ 223 (442)
T TIGR01134 147 AIARVLKRVRGAYALVIMI--GDGLIAVRDPHGIRPLVLGKR-GDGYVVASESCALDILGAEFIRDVEPGEAVVIDDGGL 223 (442)
T ss_pred HHHHHHHHhCccceEEEEE--CCEEEEEECCCCCCCcEEEEe-CCEEEEEeCchHhcccCCcEEEEECCCeEEEEECCcE
Confidence 4578999999999999997 479999999999999999997 46799999999998766667999999 5566
Q ss_pred EEEeCCCCccc-------ccCCCcccccCce
Q 027500 193 RSFENPKNKIT-------AVPAAEEEIWGAT 216 (222)
Q Consensus 193 ~~~~~~~~~~~-------~~~r~~s~~~g~~ 216 (222)
+++.....+.+ ||.||||.|.|.+
T Consensus 224 ~~~~~~~~~~~~c~fe~vYfarpds~~~g~~ 254 (442)
T TIGR01134 224 ESRLFANTPRAPCIFEYVYFARPDSVIDGIS 254 (442)
T ss_pred EEEeccCCCCcceEEEEEEecCCcceECCeE
Confidence 66443222222 9999999999975
No 28
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=99.97 E-value=2.3e-29 Score=240.15 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=137.8
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNV 53 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~ 53 (222)
||||||..-... ....+..|+.+|+|||||+.+++. .+++
T Consensus 1 MCGI~g~~~~~~-------------~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~ 67 (604)
T PRK00331 1 MCGIVGYVGQRN-------------AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTT 67 (604)
T ss_pred CcEEEEEEcCcc-------------HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcE
Confidence 999999972110 134566899999999999999875 3468
Q ss_pred EEEEEeC---C--CCCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC---C
Q 027500 54 TLAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (222)
Q Consensus 54 ~Lg~~r~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~---~ 119 (222)
+|||+|. + ...+.||+.+.+++++++|||+|||+++|+++| |+ +.+|+|++ +++|.++.+.|. +
T Consensus 68 ~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi--~~l~~~~~~~g~~~~~ 145 (604)
T PRK00331 68 GIGHTRWATHGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVI--AHLIEEELKEGGDLLE 145 (604)
T ss_pred EEEEEecCCCCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHH--HHHHHHHHhhCCCHHH
Confidence 9999993 2 235789998767889999999999999999998 43 67788876 688888753332 4
Q ss_pred cHHHHHhcccCceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC
Q 027500 120 PPNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ 188 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~-~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp 188 (222)
++.++++.|+|+|||++||..+ ++++++||+ |||||+.. ++.++||||.++|...+.. +.++||
T Consensus 146 a~~~~~~~l~G~~a~~~~d~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~p 210 (604)
T PRK00331 146 AVRKALKRLEGAYALAVIDKDEPDTIVAARNG---SPLVIGLG-EGENFLASDALALLPYTRR-VIYLED 210 (604)
T ss_pred HHHHHHHhccCeeEEEEEecCCCCEEEEEECC---CceEEEEc-CCeEEEEECHHHHHHhcCE-EEEECC
Confidence 5678999999999999999886 899999995 99999997 4679999999999998764 788988
No 29
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.96 E-value=1.3e-28 Score=222.19 Aligned_cols=202 Identities=20% Similarity=0.215 Sum_probs=155.7
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE-CC---------------------------c
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV-GD---------------------------N 52 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~-~~---------------------------~ 52 (222)
||||||.+..+. +. .....-..+-+|+|||.++.++.. ++ .
T Consensus 4 ~CGV~Gi~~~~~-~~----------a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~ 72 (470)
T COG0034 4 MCGVFGIWGHKD-NN----------AAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGN 72 (470)
T ss_pred cceEEEEecCCc-cc----------hHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCc
Confidence 999999985322 00 134556789999999999988643 22 4
Q ss_pred EEEEEEeCC-----CCCCCCceEecC--CCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhc-cCC
Q 027500 53 VTLAYTHQN-----ESPLRQRSFAVK--DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRD-RAP 118 (222)
Q Consensus 53 ~~Lg~~r~~-----~~~~~QP~~~~~--~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~-~g~ 118 (222)
.+|||+|.+ ...+.||++... +.++++|||.|.|..+|+++| |. +.+|+|++ ++++.+... .+.
T Consensus 73 ~~IGHvRYsTaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvl--l~l~a~~~~~~~~ 150 (470)
T COG0034 73 VGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVL--LHLLARELDEDDI 150 (470)
T ss_pred ceeeEeeecCCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHH--HHHHHhhcccccH
Confidence 589999932 236789998654 459999999999999999998 43 77888887 688876542 122
Q ss_pred -CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC--------C
Q 027500 119 -YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ--------V 189 (222)
Q Consensus 119 -~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp--------~ 189 (222)
+++.++++.++|.||+++... +.|+++|||.|+|||.+|..+||.++||||..||..++.+-+++++| +
T Consensus 151 ~~a~~~~~~~v~G~ys~v~~~~--~~lia~RDP~GiRPL~iG~~~dG~yvvaSEt~Ald~iGa~~vRdv~pGE~v~i~~~ 228 (470)
T COG0034 151 FEAVKEVLRRVKGAYALVALIK--DGLIAVRDPNGIRPLVLGKLGDGFYVVASETCALDILGAEFVRDVEPGEAVIITID 228 (470)
T ss_pred HHHHHHHHhhcCCcEEEEEEEC--CeEEEEECCCCCccceeeecCCCCEEEEechhhhhcccceEEEecCCceEEEEEec
Confidence 456788999999999999986 59999999999999999998566699999999999999999999999 2
Q ss_pred C-CeEEEeC--CCCcc------cccCCCcccccCceE
Q 027500 190 G-GLRSFEN--PKNKI------TAVPAAEEEIWGATF 217 (222)
Q Consensus 190 ~-~~~~~~~--~~~~~------~~~~r~~s~~~g~~~ 217 (222)
+ ++.+..- +..+. =||+||||.|+|.+-
T Consensus 229 ~~g~~s~~~~~~~~~~~C~fEyVYFARPDS~Idg~sV 265 (470)
T COG0034 229 GDGLESKQVAEPPRRAPCSFEYVYFARPDSVIDGISV 265 (470)
T ss_pred CceeEEEeccCCCCCccceEEEEEeecCccccCCeeH
Confidence 2 2444332 32211 199999999999864
No 30
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.96 E-value=2e-28 Score=210.53 Aligned_cols=161 Identities=19% Similarity=0.172 Sum_probs=125.2
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCC-CCcceEEC------------------------------
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNS-SAVSVQVG------------------------------ 50 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGp-d~~~~~~~------------------------------ 50 (222)
|||+|......+ ......+..|+.+|+|||+ |+.++...
T Consensus 1 CGI~G~~~~~~~----------~~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~ 70 (249)
T cd01907 1 CGIFGIMSKDGE----------PFVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRY 70 (249)
T ss_pred CcEEEEEecCCc----------cccHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhc
Confidence 999998732111 0124667789999999999 99987652
Q ss_pred ------CcEEEEEEeCC-----CCCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHh
Q 027500 51 ------DNVTLAYTHQN-----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKAL 113 (222)
Q Consensus 51 ------~~~~Lg~~r~~-----~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~ 113 (222)
+.++|||+|.. ...+.||+.. ++++++|||+|+|+.+|+++| |. +.+|+|++ ++++...
T Consensus 71 ~~~~~~~~~~igH~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi--~~ll~~~ 146 (249)
T cd01907 71 DLEEYKGYHWIAHTRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVI--AYYLDLL 146 (249)
T ss_pred CchheEEEEEEEEEeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHH--HHHHHHH
Confidence 45899999942 2357999976 489999999999999999987 33 67888886 5666542
Q ss_pred hccCCC----------------------cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEec
Q 027500 114 RDRAPY----------------------PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADD 171 (222)
Q Consensus 114 g~~g~~----------------------~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe 171 (222)
...+.. ++..+++.|+|+|||++++. ++++++||++|.|||||+.. ++.++||||
T Consensus 147 ~~~~g~~~~a~~~~i~~~~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~--~~~~~~RD~~G~rPL~~g~~-~~~~~~ASE 223 (249)
T cd01907 147 LRKGGLPLEYYKHIIRMPEEERELLLALRLTYRLADLDGPFTIIVGTP--DGFIVIRDRIKLRPAVVAET-DDYVAIASE 223 (249)
T ss_pred HHhCCChHHHHHHHhcCCHhHHHHHHHHHHHhCcccCCCCEEEEEEeC--CeEEEEecCCCCccEEEEEE-CCEEEEEEc
Confidence 211111 12367899999999999995 67999999999999999998 568999999
Q ss_pred hhhHhhhc
Q 027500 172 ADLLKGAC 179 (222)
Q Consensus 172 ~~aL~~~~ 179 (222)
.++|...+
T Consensus 224 ~~al~~~~ 231 (249)
T cd01907 224 ECAIREIP 231 (249)
T ss_pred HHHHhccC
Confidence 99998775
No 31
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=99.96 E-value=5.1e-28 Score=231.08 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=136.2
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE---------------------------CCcEE
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV---------------------------GDNVT 54 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~---------------------------~~~~~ 54 (222)
|||+|..-... ....+..|+.+|+|||||+.+++. .++++
T Consensus 1 CGI~g~~~~~~-------------~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~ 67 (607)
T TIGR01135 1 CGIVGYIGQRD-------------AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVG 67 (607)
T ss_pred CeEEEEECCcc-------------HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEE
Confidence 99999873111 135667899999999999999776 34579
Q ss_pred EEEEeC---C--CCCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC---Cc
Q 027500 55 LAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---YP 120 (222)
Q Consensus 55 Lg~~r~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~---~~ 120 (222)
|||+|. + ...+.||+...+++++++|||+|||+++|+++| |+ +.+|+|++ +++|.++++.+. ++
T Consensus 68 igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi--~~l~~~~~~~~~~~~~a 145 (607)
T TIGR01135 68 IGHTRWATHGKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVI--AHLIEEYLREGGDLLEA 145 (607)
T ss_pred EEEeeccCCCCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHH--HHHHHHHHhcCCCHHHH
Confidence 999993 2 235789998777889999999999999999998 43 67888876 789988875332 35
Q ss_pred HHHHHhcccCceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC
Q 027500 121 PNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ 188 (222)
Q Consensus 121 ~~~~l~~L~G~fa~vi~d~~~-~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp 188 (222)
+.++++.|+|+|||++||... ++++++||+ |||||+.. ++.++||||.++|...+.. +.++||
T Consensus 146 i~~~~~~l~G~~a~~i~~~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~l~p 209 (607)
T TIGR01135 146 VQKALKQLRGAYALAVLHADHPETLVAARSG---SPLIVGLG-DGENFVASDVTALLPVTRR-VIYLED 209 (607)
T ss_pred HHHHHHHhcCceEEEEEecCCCCEEEEEECC---CceEEEEC-CCeEEEEEChHHHHhhCCE-EEEeCC
Confidence 668999999999999999865 569999994 99999997 5679999999999998854 778988
No 32
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase). The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
Probab=99.96 E-value=3.2e-27 Score=197.09 Aligned_cols=157 Identities=25% Similarity=0.366 Sum_probs=130.2
Q ss_pred HHHHHHhHcCCCCCcceEECC---------------------------cEEEEEEeC---C--CCCCCCceEecCCCEEE
Q 027500 31 TALVDRFLQTNSSAVSVQVGD---------------------------NVTLAYTHQ---N--ESPLRQRSFAVKDEIFC 78 (222)
Q Consensus 31 ~~m~~~l~~RGpd~~~~~~~~---------------------------~~~Lg~~r~---~--~~~~~QP~~~~~~~~~l 78 (222)
..|+..+.|||||+++++... .++|||+|. + ...+.||+....+++++
T Consensus 21 ~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~at~g~~~~~n~hPf~~~~~~~~~ 100 (220)
T cd00352 21 LRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIAL 100 (220)
T ss_pred HHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEeeecCCCCCCCCCCcCcCCCCEEE
Confidence 469999999999999976643 689999993 1 24689999876568999
Q ss_pred EEcceecChhHHHHHhC---C---CCCcchHHHHHHHHHHhhccCC--CcHHHHHhcccCceEEEEEECCCCEEEEEEcC
Q 027500 79 LFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKALRDRAP--YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQ 150 (222)
Q Consensus 79 v~nG~I~N~~eL~~~lg---~---~~~d~e~~~~~~~y~~~g~~g~--~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~ 150 (222)
+|||+|+|+.+|++++. . ..+|+|++ +++|.+|++++. +++.++++.++|.|+|+++|..+++++++||+
T Consensus 101 ~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i--~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~d~~~~~l~~~rd~ 178 (220)
T cd00352 101 VHNGEIYNYRELREELEARGYRFEGESDSEVI--LHLLERLGREGGLFEAVEDALKRLDGPFAFALWDGKPDRLFAARDR 178 (220)
T ss_pred EECcEEEcHHHHHHHHHHCCCeecCCCHHHHH--HHHHHHHhccCCHHHHHHHHHHhCCccEEEEEEECCCCEEEEEECC
Confidence 99999999999998873 2 56777776 789998874332 34578999999999999999888999999999
Q ss_pred CCCccEEEEEecCCEEEEEechhhHhhhccccceecCCC
Q 027500 151 FGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQV 189 (222)
Q Consensus 151 ~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp~ 189 (222)
+|.+||||+...++.++||||..++...+...+.++||.
T Consensus 179 ~G~~pL~~~~~~~~~~~~aSe~~~~~~~~~~~~~~l~~g 217 (220)
T cd00352 179 FGIRPLYYGITKDGGLVFASEPKALLALPFKGVRRLPPG 217 (220)
T ss_pred CCCCCeEEEEeCCCeEEEEecHHHHhhcCcccEEECCCC
Confidence 999999999982367999999999988775557777773
No 33
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.95 E-value=2.2e-27 Score=227.96 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=137.4
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE--C----------------------------
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--G---------------------------- 50 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~--~---------------------------- 50 (222)
||||||..-..+ -...+..++.+|+|||+|+.++.. +
T Consensus 24 MCGI~G~~~~~~-------------~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~ 90 (640)
T PTZ00295 24 CCGIVGYLGNED-------------ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLD 90 (640)
T ss_pred CCeEEEEEcCcc-------------hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhc
Confidence 999999873111 134566899999999999988654 1
Q ss_pred ----CcEEEEEEeC---C--CCCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhc
Q 027500 51 ----DNVTLAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRD 115 (222)
Q Consensus 51 ----~~~~Lg~~r~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~ 115 (222)
++++|||+|. + ...+.||+....++++++|||+|+|+.+|+++| |+ +.+|+|++ ++++.+...
T Consensus 91 ~~~~~~~~igH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi--~~li~~~~~ 168 (640)
T PTZ00295 91 SHKNSTIGIAHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVI--ANLIGLELD 168 (640)
T ss_pred CCCCCcEEEEEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHH--HHHHHHHHh
Confidence 2359999993 2 246799998766889999999999999999988 43 67888887 677764322
Q ss_pred cCC---CcHHHHHhcccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC---
Q 027500 116 RAP---YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ--- 188 (222)
Q Consensus 116 ~g~---~~~~~~l~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp--- 188 (222)
.+. +++.++++.|+|+|||++||.. .++++++||+ |||||+.. ++.++||||.++|...+.+ +..++|
T Consensus 169 ~g~~~~~a~~~~~~~l~G~~a~~~~~~~~~~~l~~~Rd~---~PL~~g~~-~~~~~~aSE~~al~~~~~~-~~~l~pGei 243 (640)
T PTZ00295 169 QGEDFQEAVKSAISRLQGTWGLCIIHKDNPDSLIVARNG---SPLLVGIG-DDSIYVASEPSAFAKYTNE-YISLKDGEI 243 (640)
T ss_pred cCCCHHHHHHHHHHHhhhhceEEEEEeCCCCEEEEEECC---CceEEEEc-CceEEEEechHHHHhhCcE-EEEeCCCeE
Confidence 221 3557899999999999999976 5899999996 99999997 4679999999999988876 555777
Q ss_pred ----CCCeEEEe
Q 027500 189 ----VGGLRSFE 196 (222)
Q Consensus 189 ----~~~~~~~~ 196 (222)
.++++.|.
T Consensus 244 ~~i~~~~~~~~~ 255 (640)
T PTZ00295 244 AELSLENVNDLY 255 (640)
T ss_pred EEEECCeEEEEe
Confidence 45566665
No 34
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A.
Probab=99.95 E-value=1.3e-27 Score=185.22 Aligned_cols=107 Identities=31% Similarity=0.536 Sum_probs=70.6
Q ss_pred CCCCCCceE-ecCCCEEEEEcceecChhHHHHHhC---C---CCCcchHHHHHHHHHH---hhccCCCcHHHHHhcccCc
Q 027500 62 ESPLRQRSF-AVKDEIFCLFEGALDNLGSLRQQYG---L---AKSANEVILVIEAYKA---LRDRAPYPPNHVVGHLSGY 131 (222)
Q Consensus 62 ~~~~~QP~~-~~~~~~~lv~nG~I~N~~eL~~~lg---~---~~~d~e~~~~~~~y~~---~g~~g~~~~~~~l~~L~G~ 131 (222)
...+.||+. +.++++++++||+|||+++|+++|. . +.+|+|++ +++|++ |+ .+++++|+|.
T Consensus 9 ~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i--~~~~~~~~~~~-------~~~~~~l~G~ 79 (125)
T PF13537_consen 9 SDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELI--LHLYEEYREWG-------EDFLKRLDGP 79 (125)
T ss_dssp ----------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHH--HHHHHH---HG-------GGGGGT--EE
T ss_pred ccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHH--HHHHHHHHHHH-------HHHHHhCCce
Confidence 346799999 5778899999999999999999983 2 45666664 789887 77 8999999999
Q ss_pred eEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhh
Q 027500 132 FAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKG 177 (222)
Q Consensus 132 fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~ 177 (222)
|||++||+.+++++++|||+|+|||||+..+++.++||||+++|++
T Consensus 80 fa~v~~d~~~~~l~~~rD~~G~rpLyy~~~~g~~~~faSe~~~L~a 125 (125)
T PF13537_consen 80 FAFVIWDKDKKRLFLARDRFGIRPLYYGRTDGNGLAFASEIKALLA 125 (125)
T ss_dssp EEEEEEETTE--EEEEE-TT--S--EEEEETT-EEEEESSHHHHHT
T ss_pred EEEEEEeCCCcEEEEEECCCCCCCeEEEEeCCCEEEEEEcHHHhcC
Confidence 9999999998999999999999999999984358999999999864
No 35
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type. Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
Probab=99.94 E-value=1.4e-26 Score=192.54 Aligned_cols=95 Identities=25% Similarity=0.316 Sum_probs=85.8
Q ss_pred CCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEE
Q 027500 74 DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147 (222)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~a 147 (222)
+++++++||||||+.+|+++| +. +.+|+|++ +++|++|| .+++++|+|+|||+|||++ +++++|
T Consensus 50 ~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvl--l~~y~~~G-------~~~l~~L~G~FAfai~D~~-~~L~la 119 (199)
T cd01909 50 ETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELL--LLLLTRLG-------LHAFRLAEGDFCFFIEDGN-GRLTLA 119 (199)
T ss_pred CCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHH--HHHHHHHh-------HHHHHHcCEEEEEEEEcCC-CEEEEE
Confidence 579999999999999999998 32 56777776 89999999 8999999999999999998 999999
Q ss_pred EcCCCCccEEEEEecCCEEEEEechhhHhhhcc
Q 027500 148 SDQFGKVPLYWGITADGHVAFADDADLLKGACG 180 (222)
Q Consensus 148 RD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~ 180 (222)
|||+|+|||||... +.++||||+++|+.++.
T Consensus 120 RDr~GikPLYy~~~--~~l~FASEikaLla~~~ 150 (199)
T cd01909 120 TDHAGSVPVYLVQA--GEVWATTELKLLAAHEG 150 (199)
T ss_pred ECCCCCcCeEEEEC--CeEEEEeCHHHHhhCcC
Confidence 99999999999886 57999999999987654
No 36
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.93 E-value=2.6e-25 Score=196.34 Aligned_cols=205 Identities=18% Similarity=0.257 Sum_probs=148.6
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE----------------------------CCc
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV----------------------------GDN 52 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~----------------------------~~~ 52 (222)
||||||...+++-+.+ ..+....-+|+|||.++.++-. .++
T Consensus 1 eCGv~Gi~~a~~~~~l-----------~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~ 69 (474)
T KOG0572|consen 1 ECGVFGIVAAGEASRL-----------PELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGS 69 (474)
T ss_pred CCcEEEEEecCccccC-----------cHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccc
Confidence 9999999875444222 1122233689999999877531 236
Q ss_pred EEEEEEeCC-----CCCCCCceEec--CCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHH--H-hhcc
Q 027500 53 VTLAYTHQN-----ESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYK--A-LRDR 116 (222)
Q Consensus 53 ~~Lg~~r~~-----~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~--~-~g~~ 116 (222)
.+|||+|.+ ...+.|||+.. .+.++++|||++.|+++||+++ |. |.+|+|+++.+-++. + ++.+
T Consensus 70 ~gIGH~RYsTaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~~a~~~~~~~~~~ 149 (474)
T KOG0572|consen 70 IGIGHTRYSTAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQLIAYAPEDVYRVD 149 (474)
T ss_pred eeeeeeecccccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHHHHhchHhhhccc
Confidence 899999932 23679999864 3669999999999999999998 32 788999875444443 1 1112
Q ss_pred CC---CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecC--C--EEEEEechhhHhhhccccceecCC-
Q 027500 117 AP---YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITAD--G--HVAFADDADLLKGACGKSLASFPQ- 188 (222)
Q Consensus 117 g~---~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~--~--~~~faSe~~aL~~~~~~~~~~~pp- 188 (222)
++ ..+..+.+.++|.||+++... ++||+.||++|.|||+.|+... + .+++|||.+++.....+..+++-|
T Consensus 150 ~~d~~~ri~~~~~~~~g~Yslv~m~~--d~l~avRDp~G~RPL~iG~r~~~~g~~~~v~aSESc~f~~i~a~y~Rev~PG 227 (474)
T KOG0572|consen 150 APDWFARIRDVMELLPGAYSLVFMTA--DKLYAVRDPYGNRPLCIGRRSNPDGTEAWVVASESCAFLSIGARYEREVRPG 227 (474)
T ss_pred CccHHHHHHHHHHhcCCceeEEEEEc--cEEEEEecCCCCccceEeeecCCCCcceEEEEecceeeeecccEEEEeecCc
Confidence 22 246789999999999999985 6799999999999999998532 2 799999999999988777777777
Q ss_pred ------CCCe---EEEeCCC-Cc-------ccccCCCcccccCceEE
Q 027500 189 ------VGGL---RSFENPK-NK-------ITAVPAAEEEIWGATFK 218 (222)
Q Consensus 189 ------~~~~---~~~~~~~-~~-------~~~~~r~~s~~~g~~~~ 218 (222)
.++. -.+..|. ++ .-||+|+||.+.|.+-+
T Consensus 228 EiV~i~r~g~~s~~~~~~~~~~~~~~cIFEyvYFArpdSi~eG~sVY 274 (474)
T KOG0572|consen 228 EIVEISRNGVKSVDIMKRPDENRMAFCIFEYVYFARPDSIFEGQSVY 274 (474)
T ss_pred eEEEEecCCceeeeeecCCccccccceeeeEEEeccCCceecccchH
Confidence 2222 2223332 12 22999999999998654
No 37
>PF13522 GATase_6: Glutamine amidotransferase domain
Probab=99.93 E-value=1.1e-24 Score=170.58 Aligned_cols=120 Identities=26% Similarity=0.411 Sum_probs=102.6
Q ss_pred CCCcce--EECCcEEEEEEeC-----CCCCCCCceEecCCCEEEEEcceecChhHHHHHhC---C---CCCcchHHHHHH
Q 027500 42 SSAVSV--QVGDNVTLAYTHQ-----NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG---L---AKSANEVILVIE 108 (222)
Q Consensus 42 pd~~~~--~~~~~~~Lg~~r~-----~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg---~---~~~d~e~~~~~~ 108 (222)
||..++ +..+.++|||+|. ....+.||+...+++++++|||+|+|+.+|+++++ + +.+|+|++ ++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii--~~ 78 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEII--AA 78 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHH--HH
Confidence 566665 7788899999992 21344599966678899999999999999999883 2 57888887 67
Q ss_pred HHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEec
Q 027500 109 AYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADD 171 (222)
Q Consensus 109 ~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe 171 (222)
+++++| .++++.|+|.|++++|+...++++++||+.|.+||||+.. ++.++||||
T Consensus 79 li~~~g-------~~~l~~l~G~~a~~~~~~~~~~l~~~rd~~g~~PL~~~~~-~~~~~~ASE 133 (133)
T PF13522_consen 79 LIHRWG-------EEALERLDGAFAFAVYDKTPNKLFLARDPLGIRPLYYGRD-GDGYVFASE 133 (133)
T ss_pred HHHHHH-------HHHHHHhcCceEEEEEEcCCCEEEEEEcCCCCCCEEEEEc-CCEEEEEeC
Confidence 888888 7899999999999999988899999999999999999998 578999998
No 38
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Probab=99.92 E-value=7.7e-24 Score=204.54 Aligned_cols=183 Identities=17% Similarity=0.262 Sum_probs=136.3
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEE--C----------------------------
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQV--G---------------------------- 50 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~--~---------------------------- 50 (222)
||||||......+... ..-...+..-+.+|.|||.|+.++.. +
T Consensus 1 mCGI~g~~~~~~~~~~-------~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~ 73 (680)
T PLN02981 1 MCGIFAYLNYNVPRER-------RFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEV 73 (680)
T ss_pred CceEEEEEccCCcccc-------ccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhc
Confidence 9999998731101000 01245666789999999999988654 1
Q ss_pred ------------CcEEEEEEeC---C--CCCCCCceEecC-CCEEEEEcceecChhHHHHHh---CC---CCCcchHHHH
Q 027500 51 ------------DNVTLAYTHQ---N--ESPLRQRSFAVK-DEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILV 106 (222)
Q Consensus 51 ------------~~~~Lg~~r~---~--~~~~~QP~~~~~-~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~ 106 (222)
++++|||+|. + ...+.||+.... +.+++||||+|+|+.+|+++| |+ +.+|+|++
T Consensus 74 ~~~~l~~~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi-- 151 (680)
T PLN02981 74 AETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVI-- 151 (680)
T ss_pred cccccccccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHH--
Confidence 2479999993 2 235789998643 679999999999999999998 44 77888876
Q ss_pred HHH----HHHhhcc-C---C-CcHHHHHhcccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEec--C-----------
Q 027500 107 IEA----YKALRDR-A---P-YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITA--D----------- 163 (222)
Q Consensus 107 ~~~----y~~~g~~-g---~-~~~~~~l~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPLyy~~~~--~----------- 163 (222)
+++ |+.|+.. + . +++.+++++|+|+|||++++.. .++++++||+ +||++|... +
T Consensus 152 ~~li~~~~~~~~~~~~~~~~~~a~~~~~~~l~G~ya~~i~~~~~~~~i~~~r~~---~PL~iG~~~~~~~~~~~~~~~~~ 228 (680)
T PLN02981 152 PKLAKFVFDKLNEEEGDVTFSQVVMEVMRQLEGAYALIFKSPHYPNELVACKRG---SPLLLGVKELPEEKNSSAVFTSE 228 (680)
T ss_pred HHHHHHHHHhcccccCCCCHHHHHHHHHHhccCccceEEEecCCCCeEEEEecC---CceEEEecCcccccccccccccc
Confidence 566 5555421 1 1 3456899999999999999976 4899999994 999999962 1
Q ss_pred ----------CEEEEEechhhHhhhccccceecCC-------CCCeEEEe
Q 027500 164 ----------GHVAFADDADLLKGACGKSLASFPQ-------VGGLRSFE 196 (222)
Q Consensus 164 ----------~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~~~~~ 196 (222)
+.++||||.+||...+ +.+..++| .++++.+.
T Consensus 229 ~~~~~~~~~~~~~~~aSe~~al~~~~-~~~~~l~~gei~~i~~~~~~~~~ 277 (680)
T PLN02981 229 GFLTKNRDKPKEFFLASDASAVVEHT-KRVLVIEDNEVVHLKDGGVGIYK 277 (680)
T ss_pred cccccccccCCcEEEEeCHHHHHHhc-CEEEEECCCeEEEEECCeEEEEe
Confidence 3699999999999984 45888888 55566654
No 39
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=99.91 E-value=1.1e-23 Score=202.89 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=104.4
Q ss_pred cEEEEEEeC---C--CCCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHH----HHHhhcc
Q 027500 52 NVTLAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEA----YKALRDR 116 (222)
Q Consensus 52 ~~~Lg~~r~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~----y~~~g~~ 116 (222)
+++|||+|+ + ...+.||+.+.+++++++|||+|||+.+||++| |+ +.+|+|++ +++ |++||..
T Consensus 98 ~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEvi--~~li~~~~~~~g~~ 175 (670)
T PTZ00394 98 HVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEVI--SVLSEYLYTRKGIH 175 (670)
T ss_pred CEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHHH--HHHHHHHHHhcCCC
Confidence 479999993 2 246789998877889999999999999999998 44 78888887 544 4444311
Q ss_pred CC-CcHHHHHhcccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEecC--------------------CEEEEEechhh
Q 027500 117 AP-YPPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITAD--------------------GHVAFADDADL 174 (222)
Q Consensus 117 g~-~~~~~~l~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPLyy~~~~~--------------------~~~~faSe~~a 174 (222)
.. +++.+++++|+|+|||++.+.. .++++++||+ +||++|...+ +.++|||+..|
T Consensus 176 ~~~~a~~~~~~~l~G~ya~~i~~~~~~~~l~~~Rd~---~PL~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aSd~~a 252 (670)
T PTZ00394 176 NFADLALEVSRMVEGSYALLVKSVYFPGQLAASRKG---SPLMVGIRRTDDRGCVMKLQTYDLTDLSGPLEVFFSSDVNS 252 (670)
T ss_pred CHHHHHHHHHHHccCceEEEEEecCCCCEEEEEEcC---CceEEEeccccccccccccccccccccCCCCcEEEEeChHH
Confidence 11 3567899999999999999643 5899999997 9999999631 47999999999
Q ss_pred HhhhccccceecCC
Q 027500 175 LKGACGKSLASFPQ 188 (222)
Q Consensus 175 L~~~~~~~~~~~pp 188 (222)
|...+.+ +..+++
T Consensus 253 ~~~~t~~-~~~l~d 265 (670)
T PTZ00394 253 FAEYTRE-VVFLED 265 (670)
T ss_pred HHHhhce-EEEecC
Confidence 9999865 777777
No 40
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=8.8e-21 Score=177.94 Aligned_cols=167 Identities=17% Similarity=0.250 Sum_probs=132.4
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceE---------------------------ECCcE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQ---------------------------VGDNV 53 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~---------------------------~~~~~ 53 (222)
||||+|.-....+ -...+.+-+++|.-||=|+.++- ..+.+
T Consensus 1 MCGIvG~i~~~~~------------~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~ 68 (597)
T COG0449 1 MCGIVGYIGFLRE------------AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGV 68 (597)
T ss_pred CCcEEEEEcCCcc------------HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCce
Confidence 9999997632221 13456678888999999988763 12468
Q ss_pred EEEEEe-----CCCCCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC-CcH
Q 027500 54 TLAYTH-----QNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-YPP 121 (222)
Q Consensus 54 ~Lg~~r-----~~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~-~~~ 121 (222)
+|||+| .+...+.+|+.+ ++++|||||.|.||.+|+++| |+ +++|+|++ .|+++++-+++. +++
T Consensus 69 gIgHTRWATHG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi--~hLi~~~~~~~~~~a~ 144 (597)
T COG0449 69 GIAHTRWATHGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVI--AHLLEEIYDTSLLEAV 144 (597)
T ss_pred eeeeccccCCCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHH--HHHHHHHHHhHHHHHH
Confidence 999999 245678999976 889999999999999999999 55 78888886 788876543322 566
Q ss_pred HHHHhcccCceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC
Q 027500 122 NHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ 188 (222)
Q Consensus 122 ~~~l~~L~G~fa~vi~d~~~-~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp 188 (222)
..++++|+|+||+++.|.+. +++++||. | .||+.|.. ++..++||+..|++....+ +..+..
T Consensus 145 ~~~l~~l~Gsyal~~~~~~~p~~i~~ar~--~-sPL~iG~g-~~e~f~aSD~~a~l~~t~~-~~~l~d 207 (597)
T COG0449 145 KKVLKRLEGSYALLCTHSDFPDELVAARK--G-SPLVIGVG-EGENFLASDVSALLNFTRR-FVYLEE 207 (597)
T ss_pred HHHHHHhcceeEEEEEecCCCCeEEEEcC--C-CCeEEEec-CCcceEecChhhhhhhhce-EEEeCC
Confidence 78999999999999999885 89999998 3 99999997 5789999999999998765 444444
No 41
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=99.68 E-value=5.7e-16 Score=139.84 Aligned_cols=164 Identities=19% Similarity=0.218 Sum_probs=108.6
Q ss_pred CeeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcc-eEECCcE----EEEEEe-CCCCCCCCceEecCC
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVS-VQVGDNV----TLAYTH-QNESPLRQRSFAVKD 74 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~-~~~~~~~----~Lg~~r-~~~~~~~QP~~~~~~ 74 (222)
|||||-+-....+ . ++ .....+|...+..||||..+ +..+... ..+++- ...-...||+.. ++
T Consensus 1 MCGI~~s~~~~~~-l-------~~--~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG~~t~Qpvv~-d~ 69 (520)
T KOG0573|consen 1 MCGIFLSVDKDLA-L-------NS--ELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRGYLTKQPVVE-DD 69 (520)
T ss_pred CceEEEeecCCcc-c-------cc--cchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEeeeeccCceec-cc
Confidence 9999998754433 1 12 34556799999999999765 3333311 112222 111257899876 45
Q ss_pred CEEEEEcceecChhHHHHHhCCCCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCc
Q 027500 75 EIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKV 154 (222)
Q Consensus 75 ~~~lv~nG~I~N~~eL~~~lg~~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~r 154 (222)
++++.|||+|||-..-. ...|+..+ +..+...++. ..+.+.++.++|.|||++||.+.++||+.||++|+|
T Consensus 70 ~~vfl~NGeIyn~~~s~-----~~~d~~~l--~~~l~~~~e~--~~Il~~i~~~qGp~~~iyY~~~~~~LyfgRD~~GRr 140 (520)
T KOG0573|consen 70 RYVFLFNGEIYNGEKSD-----TLFDTDIL--AEELSNLKES--GDILDIIKSLQGPWAFIYYDVRSDKLYFGRDDIGRR 140 (520)
T ss_pred ceEEEecceeccCCCcc-----ccchHHHH--HHHHhcCCcc--ccHHHHHHhccCCceEEEEEccCcEEEEecccccce
Confidence 68999999999954311 22344443 5666554322 356889999999999999999999999999999999
Q ss_pred cEEEEEecCCEEEEEechhhHhhhccccceecCC
Q 027500 155 PLYWGITADGHVAFADDADLLKGACGKSLASFPQ 188 (222)
Q Consensus 155 PLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp 188 (222)
+|.|.....+...+.|.... ..+-+.++||
T Consensus 141 SLly~~~~~~f~~~~st~g~----~~~~i~e~~~ 170 (520)
T KOG0573|consen 141 SLLYSLDPFNFSLVLSTVGT----SGKLIYEVPP 170 (520)
T ss_pred eeeEEeccCceeEEeecccc----CCccccccCc
Confidence 99999986543333333211 1223557777
No 42
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type. GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
Probab=99.57 E-value=3.6e-14 Score=129.35 Aligned_cols=118 Identities=15% Similarity=0.173 Sum_probs=88.2
Q ss_pred CCcEEEEEEeCCCC-----CCCCceEecCCCEEEEEcceecChhHHHHHhC--------------------C---CCCcc
Q 027500 50 GDNVTLAYTHQNES-----PLRQRSFAVKDEIFCLFEGALDNLGSLRQQYG--------------------L---AKSAN 101 (222)
Q Consensus 50 ~~~~~Lg~~r~~~~-----~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~lg--------------------~---~~~d~ 101 (222)
.+..+|+|+|.... ...||+. .++|||||.|+..+++.+. . ..+|+
T Consensus 200 ~s~~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS 273 (413)
T cd00713 200 ESAFALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDS 273 (413)
T ss_pred eEEEEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChH
Confidence 34689999994322 3679984 4899999999998876541 0 36788
Q ss_pred hHHHHHHHHHHhhccCC---CcHH-------------------------HHHhcccCceEEEEEECCCCEEEEEEcCCCC
Q 027500 102 EVILVIEAYKALRDRAP---YPPN-------------------------HVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (222)
Q Consensus 102 e~~~~~~~y~~~g~~g~---~~~~-------------------------~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (222)
+++ .++++..-..|. +++. .++..++|.||+++.|. +.++++|||+|.
T Consensus 274 ~~l--d~~le~l~~~g~~l~~A~~mliPeaw~~~~~m~~~~r~fYey~~~~me~~dGp~aiv~~dg--~~i~a~rDrnGl 349 (413)
T cd00713 274 ASL--DNVLELLVRSGRSLPEAMMMLIPEAWQNNPTMDPELRAFYEYHSSLMEPWDGPAAIAFTDG--RQVGASLDRNGL 349 (413)
T ss_pred HHH--HHHHHHHHHcCCCHHHHHHHhCChhhccCccCCHHHHHHHHHHHHHhccCCCcEEEEEEeC--CEEEEEeCCCCC
Confidence 875 455543321121 1112 55688999999999985 789999999999
Q ss_pred ccEEEEEecCCEEEEEechhhHhh
Q 027500 154 VPLYWGITADGHVAFADDADLLKG 177 (222)
Q Consensus 154 rPLyy~~~~~~~~~faSe~~aL~~ 177 (222)
|||+|+.++++.++||||..+|..
T Consensus 350 RPl~~~~t~d~~~v~ASE~gal~~ 373 (413)
T cd00713 350 RPARYVITKDGLLIMSSEVGVVDV 373 (413)
T ss_pred cceEEEEECCCEEEEEeCCcccCC
Confidence 999999886668999999999855
No 43
>TIGR03442 conserved hypothetical protein TIGR03442. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
Probab=99.54 E-value=1e-13 Score=119.47 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=89.9
Q ss_pred cEEEEEEeC---C--C-CCCCCceEecCCCEEEEEcceecChh-----HHHHHh---CC----CCCcchHHHHHHHHHHh
Q 027500 52 NVTLAYTHQ---N--E-SPLRQRSFAVKDEIFCLFEGALDNLG-----SLRQQY---GL----AKSANEVILVIEAYKAL 113 (222)
Q Consensus 52 ~~~Lg~~r~---~--~-~~~~QP~~~~~~~~~lv~nG~I~N~~-----eL~~~l---g~----~~~d~e~~~~~~~y~~~ 113 (222)
.++|||+|. + . ..+.||+.. ++++++|||.|.|++ +|+++| ++ ..+|+|+++ +++.+.
T Consensus 83 ~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~--~li~~~ 158 (251)
T TIGR03442 83 GCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLF--ALLLNR 158 (251)
T ss_pred ceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHH--HHHHHH
Confidence 478999992 2 2 268999984 789999999999987 565555 21 578888764 444433
Q ss_pred -hccCC----CcHHHHHhcccCc-------eEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccc
Q 027500 114 -RDRAP----YPPNHVVGHLSGY-------FAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGK 181 (222)
Q Consensus 114 -g~~g~----~~~~~~l~~L~G~-------fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~ 181 (222)
.+..+ +++.++++.|.|. |++++.|. +++++.||+. ||||+..+ +.++||||. | ...
T Consensus 159 ~~~~~~~~~~~ai~~~~~~l~~~~~~~~~~~n~~~sdg--~~l~a~R~~~---~L~~~~~~-~~~vvASEp--l---~~~ 227 (251)
T TIGR03442 159 LLENDPRALEEALAEVLLILFSAAAAPRVRLNLLLTDG--SRLVATRWAD---TLYWLKDP-EGVIVASEP--Y---DDD 227 (251)
T ss_pred HhhcCCchHHHHHHHHHHHHHHHhhCcccceEEEEEcC--CEEEEEEeCC---eEEEEEcC-CEEEEEeCC--c---CCC
Confidence 22111 2345677888888 99999994 8999999975 99999974 579999998 2 222
Q ss_pred -cceecCCC
Q 027500 182 -SLASFPQV 189 (222)
Q Consensus 182 -~~~~~pp~ 189 (222)
.++++||.
T Consensus 228 ~~W~~v~pg 236 (251)
T TIGR03442 228 PGWQDVPDR 236 (251)
T ss_pred CCceEeCCC
Confidence 68888884
No 44
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
Probab=99.48 E-value=3.3e-13 Score=116.51 Aligned_cols=128 Identities=15% Similarity=0.126 Sum_probs=96.2
Q ss_pred CcEEEEEEeC---C--CCCCCCceEecCCCEEEEEcceecChhHHHHHh---C---C-CCCcchHHHHHHHHHHhh-ccC
Q 027500 51 DNVTLAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---G---L-AKSANEVILVIEAYKALR-DRA 117 (222)
Q Consensus 51 ~~~~Lg~~r~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g---~-~~~d~e~~~~~~~y~~~g-~~g 117 (222)
++++|||+|. . ...+.||+.. ++++++|||.|.|+.+|+..+ + . ..+|+|++ ++++.+.. +.+
T Consensus 80 ~~~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~--~~li~~~l~~~~ 155 (257)
T cd01908 80 SPLVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELA--FALLLSRLLERD 155 (257)
T ss_pred ccEEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHH--HHHHHHHHHhcC
Confidence 4589999992 1 2367999976 489999999999999998876 2 2 67888876 45554332 111
Q ss_pred -------CCcHHHHHhccc-----CceEEEEEECCCCEEEEEEcCCCCccEEEEEec-----------------CCEEEE
Q 027500 118 -------PYPPNHVVGHLS-----GYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA-----------------DGHVAF 168 (222)
Q Consensus 118 -------~~~~~~~l~~L~-----G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~-----------------~~~~~f 168 (222)
.+++.++++.|+ |.|+|++.|. ++++++||+. .+||||.... ++.++|
T Consensus 156 ~~~~~~~~~al~~~~~~l~~~~~~~~~n~~~~dg--~~l~a~r~~~-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 232 (257)
T cd01908 156 PLDPAELLDAILQTLRELAALAPPGRLNLLLSDG--EYLIATRYAS-APSLYYLTRRAPFGCARLLFRSVTTPNDDGVVV 232 (257)
T ss_pred CcchHHHHHHHHHHHHHHHHhCcCeEEEEEEECC--CEEEEEEeCC-CCceEEEeccccccccccccccccCCCCCEEEE
Confidence 135577888999 7888888885 7899999987 7999999863 357999
Q ss_pred EechhhHhhhccccceecCCC
Q 027500 169 ADDADLLKGACGKSLASFPQV 189 (222)
Q Consensus 169 aSe~~aL~~~~~~~~~~~pp~ 189 (222)
|||..+... .++++||.
T Consensus 233 aSE~l~~~~----~w~~v~~g 249 (257)
T cd01908 233 ASEPLTDDE----GWTEVPPG 249 (257)
T ss_pred EeCCCCCCC----CceEeCCC
Confidence 999887643 47777764
No 45
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Probab=99.46 E-value=2.9e-13 Score=124.34 Aligned_cols=105 Identities=21% Similarity=0.343 Sum_probs=79.4
Q ss_pred cEEEEEEe-----CCCCCCCCceEec-CCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCCC
Q 027500 52 NVTLAYTH-----QNESPLRQRSFAV-KDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAPY 119 (222)
Q Consensus 52 ~~~Lg~~r-----~~~~~~~QP~~~~-~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~~ 119 (222)
+++|+|+| .+...+.+|+.+. .++++++|||.|.||++|+..| |+ +.+|+|++ +.++...-|+.++
T Consensus 80 H~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEci--aKL~~~~~D~~~~ 157 (670)
T KOG1268|consen 80 HCGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECI--AKLYKHIYDTSPE 157 (670)
T ss_pred eeeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHH--HHHHHHHHhhCCC
Confidence 68999999 3456788898753 4679999999999999999888 54 77788876 4455432222221
Q ss_pred ------cHHHHHhcccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEe
Q 027500 120 ------PPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGIT 161 (222)
Q Consensus 120 ------~~~~~l~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPLyy~~~ 161 (222)
-++.++++|+|+|++++-... .+++.+.|+ | .||..+..
T Consensus 158 ~~~F~~lv~~v~k~lEGaFalvfkS~hfP~e~Va~Rr--g-SPlliGvK 203 (670)
T KOG1268|consen 158 DLDFHVLVELVLKELEGAFGLLFKSSHFPGEVVAARK--G-SPLLIGVK 203 (670)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHhhcCCcceeeecc--C-Ccceeeec
Confidence 136789999999999988765 589999998 5 78888864
No 46
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=99.43 E-value=7.2e-13 Score=119.57 Aligned_cols=114 Identities=22% Similarity=0.214 Sum_probs=79.0
Q ss_pred ECCcEEEEEEeC-----CCCCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---C----------------CCcc
Q 027500 49 VGDNVTLAYTHQ-----NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---A----------------KSAN 101 (222)
Q Consensus 49 ~~~~~~Lg~~r~-----~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~----------------~~d~ 101 (222)
+.+.++|+|+|. +.-...||+. +++|||+|.|...+++.+ +. + .+|+
T Consensus 193 ~~s~~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS 266 (361)
T PF00310_consen 193 FKSHFAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDS 266 (361)
T ss_dssp EEBSEEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HH
T ss_pred ccceEEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChH
Confidence 455799999993 2225689996 899999999999998876 22 3 6788
Q ss_pred hHHHHHHHHHHhhccCC--------------------C--------cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCC
Q 027500 102 EVILVIEAYKALRDRAP--------------------Y--------PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGK 153 (222)
Q Consensus 102 e~~~~~~~y~~~g~~g~--------------------~--------~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~ 153 (222)
+++ ..+++..-..+. . ....++..++|.|++++.|. +.++++|||.|.
T Consensus 267 ~~l--~~~le~l~~~g~~l~~a~~~l~p~~~~~~~~~~~~~~~~y~~~~~~~~~~dGPaai~~~~g--~~~~a~~Dr~GL 342 (361)
T PF00310_consen 267 EVL--DNLLELLLRRGRSLEEAMMMLIPPAWENDEDMSPEKRAFYEYHASLMEPWDGPAAIIFTDG--NGVGAFLDRNGL 342 (361)
T ss_dssp HHH--HHHHHHHHHTTSSHHHHHHHHSGG--TTSCCSTHHHHHHHHHHHHHHCC--CCEEEEEECS--SEEEEEE-TT--
T ss_pred HHH--HHHHHHHHhcCCCHHHHHHhhCCcccccCccCCHHHHHHHHHHHHhhccCCCceEEEEEeC--CEEEEEECCCCC
Confidence 875 445543322230 0 12456788999999999985 679999999999
Q ss_pred ccEEEEEecCCEEEEEech
Q 027500 154 VPLYWGITADGHVAFADDA 172 (222)
Q Consensus 154 rPLyy~~~~~~~~~faSe~ 172 (222)
||+.|+.++|+.+++|||.
T Consensus 343 RP~~~~~~~d~~~v~aSE~ 361 (361)
T PF00310_consen 343 RPLRYGITEDGLVVLASEA 361 (361)
T ss_dssp S--EEEEETTCEEEEESST
T ss_pred cceEEEEECCCEEEEEeCC
Confidence 9999999967889999984
No 47
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=98.63 E-value=2.7e-07 Score=94.74 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=52.1
Q ss_pred HhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccce--ecCC
Q 027500 125 VGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLA--SFPQ 188 (222)
Q Consensus 125 l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~--~~pp 188 (222)
++-++|.||+++.|. +.+++.|||.|.|||.|+..+|+.+++|||..++.....+.++ .+.|
T Consensus 333 mEpwdGpaaiv~~~g--~~i~A~~DrnGlRPlr~~~~~d~~~i~aSE~g~ldi~~~~vvrkg~l~P 396 (1485)
T PRK11750 333 MEPWDGPAGIVMTDG--RYAACNLDRNGLRPARYVITKDKLITLASEVGIWDYQPDEVVEKGRVGP 396 (1485)
T ss_pred cccCCCCEEEEEEeC--CEEEEecCCCCCccceEEEEcCCEEEEEecceeeecccceeEEecccCC
Confidence 344699999999995 8999999999999999998867789999999998766666555 5555
No 48
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D.
Probab=98.19 E-value=1.2e-05 Score=70.31 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=51.9
Q ss_pred cEEEEEEeC-----CCCCCCCceEec--CCCEEEEEcceecChhHHHH-HhCC-CCCcchHHHHHHHHHHhhccC---C-
Q 027500 52 NVTLAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQ-QYGL-AKSANEVILVIEAYKALRDRA---P- 118 (222)
Q Consensus 52 ~~~Lg~~r~-----~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~-~lg~-~~~d~e~~~~~~~y~~~g~~g---~- 118 (222)
.+.|+|+|. ....+.|||... .++.+++|||.|.+...++. .+.. ..+|+|.+++ .++....+.+ .
T Consensus 72 ~~~laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~~~~~G~TDSE~~F~-lll~~l~~~~~~~~~ 150 (271)
T PF13230_consen 72 RLFLAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDRYQPVGTTDSEHAFC-LLLDQLRDRGPDAPP 150 (271)
T ss_dssp EEEEEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHHHT--S--HHHHHHH-HHHHTTTTT-HH--H
T ss_pred CEEEEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccccccCCCcHHHHHHH-HHHHHHHHhCCcccc
Confidence 468899992 234678999853 25799999999999876542 2222 5788998753 3444332222 1
Q ss_pred ------CcHHHHHhccc--CceEEEEEECCCCEEEEEEc
Q 027500 119 ------YPPNHVVGHLS--GYFAFIVYDKSTSTLFVASD 149 (222)
Q Consensus 119 ------~~~~~~l~~L~--G~fa~vi~d~~~~~l~~aRD 149 (222)
..+.+..+.+. |.+.|++.|. +.|++.|+
T Consensus 151 ~~~~~~~~l~~~~~~~~~~~~~N~~lsDG--~~l~a~~~ 187 (271)
T PF13230_consen 151 ALEELFEALRELAKEINEYGSLNFLLSDG--ERLFAHRY 187 (271)
T ss_dssp HHHHHHHHHHHHHHS-SSSEEEEEEEE-S--S-EEEEEE
T ss_pred cHHHHHHHHHHHHHHhccCeeEEEEEECC--ceEEEEEc
Confidence 01234455555 6788888885 79999998
No 49
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00086 Score=60.78 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=75.6
Q ss_pred CCcEEEEEEeCCC-----CCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC
Q 027500 50 GDNVTLAYTHQNE-----SPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP 118 (222)
Q Consensus 50 ~~~~~Lg~~r~~~-----~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~ 118 (222)
.+..+|+|+|.+. -..+||+- .++|||||.++...++.+ +. +.+|+|.+ ..++......+-
T Consensus 201 ~s~~~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~--a~l~p~~~~~~s 272 (371)
T COG0067 201 KSAIALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVL--AKLLPILMRGGS 272 (371)
T ss_pred ceeEEEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHH--HHHHHHhcccCC
Confidence 4468999999322 24578873 369999999988776655 32 66777664 333321111110
Q ss_pred -----CcH----------HHHHhcccCceEEEEEEC-CCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhcc
Q 027500 119 -----YPP----------NHVVGHLSGYFAFIVYDK-STSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACG 180 (222)
Q Consensus 119 -----~~~----------~~~l~~L~G~fa~vi~d~-~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~ 180 (222)
+.. ..-...|.|.||++.-.. ..+...+.+|+.+.+|.+-|-. +..|.++|+..|++..+.
T Consensus 273 Ds~~~dn~lE~l~~~G~~l~~a~~m~~P~aw~~~~~~~~~~~afye~~~~l~epwdGpa-~~~f~dgse~gA~ldrng 349 (371)
T COG0067 273 DSASLDNALELLLLGGRDLYHAAMLLGPEAWVVGTDMDPEGRAFYEDHSALMEPWDGPA-DIVFTDGSEEGAILDRNG 349 (371)
T ss_pred cchhhhHHHHHHHhcCcCchhHHHhcCchhhccCCCCCcceEEEEehhhhCCCCccCCc-ceeEEeeeeeeeeeccCC
Confidence 000 233456778888776532 2356777777777777777776 456777777777766553
No 50
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=97.52 E-value=0.00081 Score=54.77 Aligned_cols=93 Identities=20% Similarity=0.314 Sum_probs=64.1
Q ss_pred CCEEEEEcceecChhHHHHHhCC------CCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEE
Q 027500 74 DEIFCLFEGALDNLGSLRQQYGL------AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 147 (222)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~~lg~------~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~a 147 (222)
.+-..-.-|.|||..-|+.-.|. .-+|.|++ +..+.+.| ..++.--+|+|+|.|=|+ ++++.+.
T Consensus 47 ~~~tayLIGsiyNr~~L~~lag~~eg~a~v~nd~ElL--~~~~~~lG-------~~aLsLAEGdfcffiE~k-ng~L~l~ 116 (201)
T PF09147_consen 47 ERGTAYLIGSIYNRRFLRGLAGMWEGHAYVLNDAELL--YTIFTRLG-------NSALSLAEGDFCFFIEDK-NGELTLI 116 (201)
T ss_dssp TTEEEEEES--S-HHHHHHHHTTT-GGGGG--HHHHH--HHHHHHH--------GGGGGG--SSEEEEEEET-TSEEEEE
T ss_pred cCccEEEEEEeccHHHHHHhhheeeccceeeccHHHH--HHHHHHhh-------hhhhhhhcCceEEEEecC-CCcEEEE
Confidence 34456678999999888766654 35666665 67888888 789999999999999776 7999999
Q ss_pred EcCCCCccEEEEEecCCEEEEEechhhHhhh
Q 027500 148 SDQFGKVPLYWGITADGHVAFADDADLLKGA 178 (222)
Q Consensus 148 RD~~G~rPLyy~~~~~~~~~faSe~~aL~~~ 178 (222)
.|+-|..|.|.-.. +..++...+|-.-..
T Consensus 117 Tds~G~~pv~lV~~--~~~WiTn~LK~V~~~ 145 (201)
T PF09147_consen 117 TDSRGFNPVYLVQS--KFIWITNSLKLVSAV 145 (201)
T ss_dssp E-SSSSS-EEEEES--SSEEEES-HHHHHHH
T ss_pred ecCCCCceEEEEec--CceEEecceEEEEEe
Confidence 99999999988876 358888887765443
No 51
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Probab=95.93 E-value=0.059 Score=46.65 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=29.8
Q ss_pred cEEEEEEeC---C--CCCCCCceEecC--CCEEEEEcceecChhHH
Q 027500 52 NVTLAYTHQ---N--ESPLRQRSFAVK--DEIFCLFEGALDNLGSL 90 (222)
Q Consensus 52 ~~~Lg~~r~---~--~~~~~QP~~~~~--~~~~lv~nG~I~N~~eL 90 (222)
.+.|+|+|. + ...+.||++.+. ..+.++|||.|.++..+
T Consensus 71 ~~viaHvR~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~ 116 (252)
T COG0121 71 ELVIAHVRKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116 (252)
T ss_pred cEEEEEEeccCCCcccccCCCCccccCCccceEEEecCcccCcccc
Confidence 588999992 2 236789998643 35799999999999874
No 52
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=90.15 E-value=1.3 Score=46.04 Aligned_cols=48 Identities=21% Similarity=0.169 Sum_probs=36.7
Q ss_pred hcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhH
Q 027500 126 GHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLL 175 (222)
Q Consensus 126 ~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL 175 (222)
+--+|.--+.+-|. +.+-+.=||.|.||-=|+.+.|+.+++|||.-.+
T Consensus 408 EpWDGPALl~FsDG--ry~GA~LDRNGLRP~Ryy~Tsdd~v~~ASEVGvv 455 (2142)
T KOG0399|consen 408 EPWDGPALLTFSDG--RYCGAILDRNGLRPARYYITSDDRVICASEVGVV 455 (2142)
T ss_pred CCCCCceEEEecCC--ceeeeeeccCCCcceeeEEecCCEEEEeeccccc
Confidence 44567655555563 6778888999999998888878899999996543
No 53
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Probab=77.26 E-value=1.4 Score=40.29 Aligned_cols=39 Identities=8% Similarity=-0.060 Sum_probs=26.4
Q ss_pred CeeeeeccccCCchhhhcCCCCCCC-CcchHHHHHHHhHcCC-CCCcceE
Q 027500 1 MLGVFSSAIVSPPEELVAAGSRTPS-PKTTSTALVDRFLQTN-SSAVSVQ 48 (222)
Q Consensus 1 m~gi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~m~~~l~~RG-pd~~~~~ 48 (222)
||||.+....... -++ .-++..+|+..|+||| +++-+..
T Consensus 12 aCGig~i~~~~g~---------~sh~iv~~~~~~L~~m~hRG~~~adg~~ 52 (371)
T COG0067 12 ACGIGGIAHKDGR---------PSHKIVEDALEALVNLTHRGAPGADGYA 52 (371)
T ss_pred cCcEEEEEecCCC---------cchhHHHHHHHHHHhhhccCCCCCCccc
Confidence 8999998632222 112 3567788999999999 5655433
No 54
>PF10736 DUF2527: Protein of unknown function (DUF2627) ; InterPro: IPR019672 This entry represents small proteins with unknown function and appear to be restricted to a family of Enterobacterial proteins. It has a highly conserved sequence. Some proteins are annotated as YobF and may be involved in stress responses in E. coli.
Probab=60.76 E-value=2.8 Score=25.04 Aligned_cols=8 Identities=50% Similarity=0.845 Sum_probs=7.0
Q ss_pred Ceeeeecc
Q 027500 1 MLGVFSSA 8 (222)
Q Consensus 1 m~gi~~~~ 8 (222)
|||||++.
T Consensus 1 M~GIFSKE 8 (38)
T PF10736_consen 1 MNGIFSKE 8 (38)
T ss_pred CcccccHh
Confidence 89999886
No 55
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=48.86 E-value=26 Score=23.66 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=18.1
Q ss_pred EEEECCCCEEEEEEcCCCC--ccEEE
Q 027500 135 IVYDKSTSTLFVASDQFGK--VPLYW 158 (222)
Q Consensus 135 vi~d~~~~~l~~aRD~~G~--rPLyy 158 (222)
+.+|...+++++..|. |+ |||+.
T Consensus 36 i~~~~~~~ei~I~tD~-GR~~RPL~v 60 (63)
T PF04566_consen 36 IVYDIREKEIRINTDA-GRLCRPLFV 60 (63)
T ss_dssp EEEETTTTEEEEE-SS-CEEEEEEEE
T ss_pred EEEeccCCEEEEEccC-CcccceeEE
Confidence 5688889999999996 74 88875
No 56
>COG4911 Uncharacterized conserved protein [Function unknown]
Probab=37.91 E-value=40 Score=25.49 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.7
Q ss_pred cHHHHHhcccCceEEEEEECCCCEE
Q 027500 120 PPNHVVGHLSGYFAFIVYDKSTSTL 144 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l 144 (222)
++.+|++..+|.|+|..|--++..+
T Consensus 73 glVDFpa~~Ng~~~~lCWK~DE~~i 97 (123)
T COG4911 73 GLVDFPAIINGKPAFLCWKIDENDI 97 (123)
T ss_pred ccccchhhhCCceEEEEEecCCcce
Confidence 4579999999999999997766554
No 57
>TIGR03823 FliZ flagellar regulatory protein FliZ. FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
Probab=36.14 E-value=26 Score=28.25 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.3
Q ss_pred CCEEEEEcceecChhHHHH
Q 027500 74 DEIFCLFEGALDNLGSLRQ 92 (222)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~ 92 (222)
+++.+|+||+|-|.+.+..
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999987753
No 58
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Probab=35.42 E-value=27 Score=28.14 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.2
Q ss_pred CCEEEEEcceecChhHHHH
Q 027500 74 DEIFCLFEGALDNLGSLRQ 92 (222)
Q Consensus 74 ~~~~lv~nG~I~N~~eL~~ 92 (222)
+++.+|+||+|-|...+..
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 5799999999999987753
No 59
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=34.41 E-value=95 Score=31.28 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=57.9
Q ss_pred cccCceEEEEEECCCCEEEEEEcCCC-------CccEEEEEecCCEEEEEechhhHhhhccccceecCCCCCeEEEeCCC
Q 027500 127 HLSGYFAFIVYDKSTSTLFVASDQFG-------KVPLYWGITADGHVAFADDADLLKGACGKSLASFPQVGGLRSFENPK 199 (222)
Q Consensus 127 ~L~G~fa~vi~d~~~~~l~~aRD~~G-------~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp~~~~~~~~~~~ 199 (222)
...|.|..+--+ ++++.+-|| +| .+-|.|+.++=+.+.||++-..|+..+.+ +-|..|+.-+
T Consensus 214 spn~~~~Aa~d~--dGrI~vw~d-~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E--------~VLv~Wq~~T 282 (792)
T KOG1963|consen 214 SPNERYLAAGDS--DGRILVWRD-FGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE--------GVLVLWQLET 282 (792)
T ss_pred ccccceEEEecc--CCcEEEEec-cccccccccceEEEecccccceeEEecCCceEeecccc--------eEEEEEeecC
Confidence 456677654433 377999998 45 35566776533579999998888887764 3488888877
Q ss_pred CcccccCCCcccccCceEE
Q 027500 200 NKITAVPAAEEEIWGATFK 218 (222)
Q Consensus 200 ~~~~~~~r~~s~~~g~~~~ 218 (222)
.+.+.+||.-|.|=+++.-
T Consensus 283 ~~kqfLPRLgs~I~~i~vS 301 (792)
T KOG1963|consen 283 GKKQFLPRLGSPILHIVVS 301 (792)
T ss_pred CCcccccccCCeeEEEEEc
Confidence 7777999998887666554
No 60
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=32.15 E-value=17 Score=28.43 Aligned_cols=26 Identities=19% Similarity=0.470 Sum_probs=18.2
Q ss_pred cCceEEEEEECCCCEEEEEEcCCCCccEE
Q 027500 129 SGYFAFIVYDKSTSTLFVASDQFGKVPLY 157 (222)
Q Consensus 129 ~G~fa~vi~d~~~~~l~~aRD~~G~rPLy 157 (222)
+|.|++++++. ++++-..++ |++|||
T Consensus 10 e~~~S~Vv~~~--~~i~t~~~r-Gv~pL~ 35 (134)
T PF08973_consen 10 EENYSCVVLKD--GEIRTSDGR-GVKPLY 35 (134)
T ss_dssp HTT-SEEEESS--SEEEEE--S-TTHHHH
T ss_pred hCCceEEEEeC--CEEEEeCCC-ChHHHH
Confidence 46799999985 567766665 999998
No 61
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group. This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
Probab=29.78 E-value=32 Score=31.34 Aligned_cols=21 Identities=5% Similarity=0.148 Sum_probs=16.4
Q ss_pred chHHHHHHHhHcCCC------CCcceE
Q 027500 28 TTSTALVDRFLQTNS------SAVSVQ 48 (222)
Q Consensus 28 ~~~~~m~~~l~~RGp------d~~~~~ 48 (222)
....+++..|.|||. |+.++-
T Consensus 19 ~~~l~~L~~m~HRG~~d~~tGDGAGi~ 45 (361)
T PF00310_consen 19 DDALEALKRMEHRGGVDGNTGDGAGIL 45 (361)
T ss_dssp HHHHHHHHHHGGGSTBTSSCESEEEEE
T ss_pred HHHHHHHhcccccCCCCCCCCcceEEE
Confidence 456689999999999 666654
No 62
>COG4315 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.86 E-value=73 Score=24.63 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=22.9
Q ss_pred HhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEe
Q 027500 125 VGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGIT 161 (222)
Q Consensus 125 l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~ 161 (222)
-..-+|.|+++.-+. ++.--+.| | +|||+...
T Consensus 86 ~dka~Gdysii~RkD--Gt~QWa~d--G-kPLY~w~k 117 (138)
T COG4315 86 ADKASGDYSIIARKD--GTKQWAYD--G-KPLYLWVK 117 (138)
T ss_pred ccccCCCeeeEEecC--chhhhhcC--C-ceeEEEee
Confidence 356789999988764 44444556 5 99998875
No 63
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=22.85 E-value=81 Score=25.36 Aligned_cols=20 Identities=15% Similarity=0.127 Sum_probs=18.3
Q ss_pred CCCCcchHHHHHHHhHcCCC
Q 027500 23 TPSPKTTSTALVDRFLQTNS 42 (222)
Q Consensus 23 ~~~~~~~~~~m~~~l~~RGp 42 (222)
+++|.+++++++..|+.||-
T Consensus 12 ~SGKTTLie~lv~~L~~~G~ 31 (161)
T COG1763 12 NSGKTTLIEKLVRKLKARGY 31 (161)
T ss_pred CCChhhHHHHHHHHHHhCCc
Confidence 78899999999999999985
Done!