Query 027500
Match_columns 222
No_of_seqs 185 out of 1483
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:17:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ct9_A Asparagine synthetase B 100.0 2.2E-34 7.5E-39 270.9 19.1 180 2-201 1-196 (553)
2 1ao0_A Glutamine phosphoribosy 100.0 9.2E-33 3.2E-37 254.6 18.2 196 2-215 1-253 (459)
3 1xff_A D-fructose-6-, glucosam 100.0 2.8E-31 9.6E-36 225.5 20.1 165 2-188 1-208 (240)
4 1ecf_A Glutamine phosphoribosy 100.0 1.8E-29 6E-34 235.2 22.4 198 2-215 1-269 (504)
5 2bpl_A Glucosamine--fructose-6 100.0 2.7E-28 9.3E-33 231.6 17.2 174 2-197 1-224 (608)
6 1jgt_A Beta-lactam synthetase; 99.9 3.4E-25 1.2E-29 206.7 11.9 128 38-188 40-189 (513)
7 1q15_A CARA; CMPR, (2S,5S)-5-c 99.9 1.4E-23 4.6E-28 195.5 6.0 125 51-188 26-182 (503)
8 3mdn_A Glutamine aminotransfer 99.8 1.9E-20 6.5E-25 161.9 11.7 128 52-188 82-241 (274)
9 1te5_A Conserved hypothetical 99.7 1E-19 3.6E-24 155.9 -0.6 129 52-189 72-241 (257)
10 1ea0_A Glutamate synthase [NAD 99.4 3E-13 1E-17 137.0 9.5 136 51-196 202-394 (1479)
11 1ofd_A Ferredoxin-dependent gl 99.3 4.1E-12 1.4E-16 129.1 11.4 137 50-196 197-393 (1520)
12 1vk9_A Conserved hypothetical 32.6 8.6 0.00029 29.6 -0.2 26 129-157 27-52 (151)
No 1
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1
Probab=100.00 E-value=2.2e-34 Score=270.90 Aligned_cols=180 Identities=23% Similarity=0.391 Sum_probs=150.4
Q ss_pred eeeeeccccCC-chhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEECCcEEEEEEeC---CCCCCCCceEecCCCEE
Q 027500 2 LGVFSSAIVSP-PEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVGDNVTLAYTHQ---NESPLRQRSFAVKDEIF 77 (222)
Q Consensus 2 ~gi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~~~~~Lg~~r~---~~~~~~QP~~~~~~~~~ 77 (222)
|||+|.....+ +.. ....+.+|++.|+|||||+.+++..++++|||+|+ +...+.||+.+.+++++
T Consensus 1 CGI~G~~~~~~~~~~----------~~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~ 70 (553)
T 1ct9_A 1 ASIFGVFDIKTDAVE----------LRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHV 70 (553)
T ss_dssp CEEEEEESCCSCHHH----------HHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEE
T ss_pred CEEEEEEcCCCcchh----------HHHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEE
Confidence 99999762111 111 13456789999999999999999999999999993 22368999998778899
Q ss_pred EEEcceecChhHHHHHhC----C-CCCcchHHHHHHHHHHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCC
Q 027500 78 CLFEGALDNLGSLRQQYG----L-AKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFG 152 (222)
Q Consensus 78 lv~nG~I~N~~eL~~~lg----~-~~~d~e~~~~~~~y~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G 152 (222)
++|||+|||+.+|+++|. . +.+|+|++ +++|++|| .+++++|+|+|||++||.++++++++||++|
T Consensus 71 lv~NGeIyN~~eLr~~L~~~~~f~s~sDtEvi--l~l~~~~g-------~~~l~~l~G~fa~~i~d~~~~~l~~aRD~~G 141 (553)
T 1ct9_A 71 LAVNGEIYNHQALRAEYGDRYQFQTGSDCEVI--LALYQEKG-------PEFLDDLQGMFAFALYDSEKDAYLIGRDHLG 141 (553)
T ss_dssp EEEEEEETTHHHHHHHHTTTSCCCSCCTTHHH--HHHHHHHT-------TTTGGGCCEEEEEEEEETTTTEEEEEECTTC
T ss_pred EEEEEEEECHHHHHHHHhccCccCCCCcHHHH--HHHHHHHH-------HHHHHhCCccEEEEEEECCCCEEEEEECCCC
Confidence 999999999999999984 2 67888887 79999998 7899999999999999998899999999999
Q ss_pred CccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCeEEEeCCCCc
Q 027500 153 KVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGLRSFENPKNK 201 (222)
Q Consensus 153 ~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~~~~~~~~~~ 201 (222)
+|||||+...++.++||||+++|...+. .+..+|| .+++++|..+.|.
T Consensus 142 ~~PLy~~~~~~~~~~faSe~~al~~~~~-~i~~l~pG~~~~~~~g~~~~yw~~~~~ 196 (553)
T 1ct9_A 142 IIPLYMGYDEHGQLYVASEMKALVPVCR-TIKEFPAGSYLWSQDGEIRSYYHRDWF 196 (553)
T ss_dssp CSCCEEEECTTCCEEEESSGGGTTTTCS-EEEECCTTEEEETTTCSEEECCCCGGG
T ss_pred CCCeEEEEecCCEEEEeechHHHHhhcC-CEEEECCCeEEEEcCCcEEEeecCCcc
Confidence 9999999953567999999999988764 5999999 4557777666543
No 2
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=100.00 E-value=9.2e-33 Score=254.60 Aligned_cols=196 Identities=17% Similarity=0.143 Sum_probs=152.3
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC---------------------------CcEE
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG---------------------------DNVT 54 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~---------------------------~~~~ 54 (222)
|||||.....+ ....+..|+.+|+|||||+.+++.. ++++
T Consensus 1 CGI~G~~~~~~-------------~~~~~~~~l~~L~hRG~D~~Gi~~~~~~~~~~~k~~g~v~~~~~~~~l~~l~g~~~ 67 (459)
T 1ao0_A 1 CGVFGIWGHEE-------------APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGA 67 (459)
T ss_dssp CEEEEEESCTB-------------HHHHHHHHHHHTGGGCCSEEEEEEECSSCEEEEEEESCHHHHTTSSCTTTCCBSEE
T ss_pred CEEEEEECCcc-------------hHHHHHHHHHHHHhcCCCcCCEEEEeCCeEEEEecCCcHhhhcchhhhhccCCCEE
Confidence 99999863211 1234568999999999999997763 4689
Q ss_pred EEEEeCC-----CCCCCCceEe---cCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC-C
Q 027500 55 LAYTHQN-----ESPLRQRSFA---VKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP-Y 119 (222)
Q Consensus 55 Lg~~r~~-----~~~~~QP~~~---~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~-~ 119 (222)
|||+|.. ...+.||+.. .+++++++|||+|+|+.+|+++| |. +.+|+|++ +++|.+|++... +
T Consensus 68 igH~R~at~g~~~~~n~qP~~~~~~~~g~~~l~hNG~I~N~~~Lr~~L~~~g~~f~~~sDsEvi--~~l~~~~~~~~~~~ 145 (459)
T 1ao0_A 68 IGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVL--AHLIKRSGHFTLKD 145 (459)
T ss_dssp EEEEECCC----CGGGSSSEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCCCSSCHHHHH--HHHHHTCCCSSHHH
T ss_pred EEEEecCCCCCCCccCCCCceeccCCCCcEEEEEEEEecCHHHHHHHHHhcCCcCCCCCHHHHH--HHHHHHhccCCHHH
Confidence 9999942 1257899986 45789999999999999999988 43 67788876 799998763211 2
Q ss_pred cHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCCe
Q 027500 120 PPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGGL 192 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~~ 192 (222)
++.+++++|+|+|||++|| .++|+++||++|+|||||+.. ++.++||||.++|.....+.+.++|| .+++
T Consensus 146 a~~~~~~~l~G~fa~~i~d--~~~l~~~RD~~G~rPL~~~~~-~~~~~~ASE~~al~~~~~~~i~~l~pG~~~~i~~~~~ 222 (459)
T 1ao0_A 146 QIKNSLSMLKGAYAFLIMT--ETEMIVALDPNGLRPLSIGMM-GDAYVVASETCAFDVVGATYLREVEPGEMLIINDEGM 222 (459)
T ss_dssp HHHHHHTTCCEEEEEEEEC--SSEEEEEECTTCCSCCEEEEE-TTEEEEESSTHHHHHHTCEEEEECCTTEEEEEETTEE
T ss_pred HHHHHHHhhccceEEEEEe--CCEEEEEECCCCCCCeEEEec-CCEEEEEECchHHhcCCCceEEEECCCEEEEEECCce
Confidence 4578999999999999999 479999999999999999998 56899999999998876667999999 4445
Q ss_pred EEEeCCCCc--------ccccCCCcccccCc
Q 027500 193 RSFENPKNK--------ITAVPAAEEEIWGA 215 (222)
Q Consensus 193 ~~~~~~~~~--------~~~~~r~~s~~~g~ 215 (222)
++......+ .-|++|+||.+.+.
T Consensus 223 ~~~~~~~~~~~~~c~feyiyfarp~s~~~~~ 253 (459)
T 1ao0_A 223 KSERFSMNINRSICSMEYIYFSRPDSNIDGI 253 (459)
T ss_dssp EEEESCSSCCCCEEHHHHHTTSCTTCEETTE
T ss_pred EEEecCCCccccccceeeeeccCCcchhccH
Confidence 443222111 22789999976654
No 3
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A*
Probab=99.98 E-value=2.8e-31 Score=225.52 Aligned_cols=165 Identities=16% Similarity=0.204 Sum_probs=135.4
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceE-E---------------------------CCcE
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQ-V---------------------------GDNV 53 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~-~---------------------------~~~~ 53 (222)
|||+|.....+. ...+..|++.|.|||||+.+++ . .+++
T Consensus 1 CGI~G~~~~~~~-------------~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~ 67 (240)
T 1xff_A 1 CGIVGAIAQRDV-------------AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGT 67 (240)
T ss_dssp CEEEEEECSSCC-------------HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSE
T ss_pred CcEEEEEcCcch-------------HHHHHHHHHHHHhcCCCcCCEEEEecCCcEEEEEcCCcHHHHHhhhhcccCCccE
Confidence 999998632111 3466789999999999999988 6 3579
Q ss_pred EEEEEeC---C--CCCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC---C
Q 027500 54 TLAYTHQ---N--ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (222)
Q Consensus 54 ~Lg~~r~---~--~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~---~ 119 (222)
+|||+|. + ...+.||+.. ++++++|||+|||+.+|+++| |+ +.+|+|++ +++|+.++..+. +
T Consensus 68 ~igH~R~at~g~~~~~n~qP~~~--~~~~l~hNG~I~N~~~lr~~L~~~g~~f~~~sDsEvi--~~l~~~~~~~g~~~~~ 143 (240)
T 1xff_A 68 GIAHTRWATHGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVI--AHLVNWELKQGGTLRE 143 (240)
T ss_dssp EEEEEECCSSSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHH--HHHHHHHHHTSSCHHH
T ss_pred EEEEEeccCCCCCCcccCCCccc--CCEEEEEEEEECCHHHHHHHHHhCCCCCCCCCHHHHH--HHHHHHHHhcCCCHHH
Confidence 9999993 1 2357999987 789999999999999999988 43 67888887 689988863332 2
Q ss_pred cHHHHHhcccCceEEEEEECC-CCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC
Q 027500 120 PPNHVVGHLSGYFAFIVYDKS-TSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ 188 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~-~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp 188 (222)
++.++++.|+|+|||++||.. .++|+++||+ |||||+.. ++.++||||.+||...+.+ +.++||
T Consensus 144 ai~~~~~~l~G~fa~~i~d~~~~~~l~~~Rd~---~PL~~~~~-~~~~~~aSE~~al~~~~~~-~~~l~p 208 (240)
T 1xff_A 144 AVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTRR-FIFLEE 208 (240)
T ss_dssp HHHHHGGGCCEEEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCSE-EEECCT
T ss_pred HHHHHHHhcccceEEEEEecCCCCEEEEEECC---CceEEEEe-CCEEEEEECHHHHHhhCCe-EEEECC
Confidence 345899999999999999985 6899999997 99999997 5679999999999888765 889998
No 4
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=99.97 E-value=1.8e-29 Score=235.18 Aligned_cols=198 Identities=15% Similarity=0.106 Sum_probs=150.5
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC----------------------------CcE
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DNV 53 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----------------------------~~~ 53 (222)
|||||.....+ ....+..|+..|+|||||+.+++.. +++
T Consensus 1 CGI~G~~~~~~-------------~~~~l~~~l~~LqhRG~D~aGi~~~~~~~~~~~~k~~g~v~~vf~~~~~~~l~g~~ 67 (504)
T 1ecf_A 1 CGIVGIAGVMP-------------VNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNM 67 (504)
T ss_dssp CEEEEEECSSC-------------CHHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSE
T ss_pred CEEEEEEcChh-------------HHHHHHHHHHHHHhcCCCcceEEEEcCCCcEEEEecCCchhhhcCccccccCCCCE
Confidence 99999873211 1345678999999999999998753 358
Q ss_pred EEEEEeCC-----CCCCCCceEecC-CCEEEEEcceecChhHHHHHh---C-C---CCCcchHHHHHHHHHHhhcc-CC-
Q 027500 54 TLAYTHQN-----ESPLRQRSFAVK-DEIFCLFEGALDNLGSLRQQY---G-L---AKSANEVILVIEAYKALRDR-AP- 118 (222)
Q Consensus 54 ~Lg~~r~~-----~~~~~QP~~~~~-~~~~lv~nG~I~N~~eL~~~l---g-~---~~~d~e~~~~~~~y~~~g~~-g~- 118 (222)
+|||+|.. ...+.||+.... .+++++|||+|+|+.+|+++| + . +.+|+|++ +++|.++..+ |.
T Consensus 68 ~igH~R~sT~G~~~~~n~QP~~~~~~~~~~l~hNG~i~N~~eLr~~L~~~g~~~f~s~sDsEvi--~~l~~~~~~~~g~~ 145 (504)
T 1ecf_A 68 GIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEIL--LNIFASELDNFRHY 145 (504)
T ss_dssp EEEEEECCBTTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHH--HHHHHHHHTTCCSS
T ss_pred EEEEEccCcCCCCCccccCCeEeccCCCEEEEEeeeecCHHHHHHHHHhhCCCCCCCCCHHHHH--HHHHHHHHHhcccc
Confidence 99999932 236899998643 469999999999999999887 2 2 67888876 6888776321 11
Q ss_pred --------CcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEec--C--CEEEEEechhhHhhhccccceec
Q 027500 119 --------YPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITA--D--GHVAFADDADLLKGACGKSLASF 186 (222)
Q Consensus 119 --------~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~--~--~~~~faSe~~aL~~~~~~~~~~~ 186 (222)
+++.++++.|+|+|||++|+. .++|+++||++|+|||||+... + +.++||||.+||...+.+.++++
T Consensus 146 ~~~~~~~~~a~~~~~~~l~G~fa~v~~~~-~~~l~a~RD~~GirPL~~g~~~~~~g~~~~~~ASE~~al~~~~~~~v~~l 224 (504)
T 1ecf_A 146 PLEADNIFAAIAATNRLIRGAYACVAMII-GHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLGFDFLRDV 224 (504)
T ss_dssp SCCHHHHHHHHHHHHHHCCEEEEEEEEET-TTEEEEEECTTCCSCCEEEEEECSSSCEEEEEESSTHHHHHHTCEEEEEC
T ss_pred ccccccHHHHHHHhhhhcCccceEEEEEc-CCeEEEEECCCCCCceEEeecccCCCceEEEEEeCchHhhccCccEEEEC
Confidence 134578999999999999985 3589999999999999999972 3 37999999999998877779999
Q ss_pred CC--------CCCeEEEe--CCCCccc------ccCCCcccccCc
Q 027500 187 PQ--------VGGLRSFE--NPKNKIT------AVPAAEEEIWGA 215 (222)
Q Consensus 187 pp--------~~~~~~~~--~~~~~~~------~~~r~~s~~~g~ 215 (222)
|| +|.+.+.. .+..+.. |++|+|+.|.+.
T Consensus 225 ~PGe~v~i~~~g~~~~~~~~~~~~~~~c~fe~iYfarP~s~i~~~ 269 (504)
T 1ecf_A 225 APGEAIYITEEGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKI 269 (504)
T ss_dssp CTTEEEEEETTCCEEEEECSSSCCCCCBHHHHHTTSCTTCEETTE
T ss_pred CCCeEEEEeCCCceecceecCCCCCCccEEEEehhcChHHHhhhc
Confidence 99 33344322 1222222 789999998887
No 5
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*
Probab=99.96 E-value=2.7e-28 Score=231.64 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=139.7
Q ss_pred eeeeeccccCCchhhhcCCCCCCCCcchHHHHHHHhHcCCCCCcceEEC----------------------------CcE
Q 027500 2 LGVFSSAIVSPPEELVAAGSRTPSPKTTSTALVDRFLQTNSSAVSVQVG----------------------------DNV 53 (222)
Q Consensus 2 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~l~~RGpd~~~~~~~----------------------------~~~ 53 (222)
|||+|.....+ ....+..|++.|.|||||+.+++.. +++
T Consensus 1 CGI~G~~~~~~-------------~~~~l~~~l~~l~~RG~D~~Gi~~~~~~~~~~~~k~~g~~~~l~~~l~~~~~~~~~ 67 (608)
T 2bpl_A 1 CGIVGAIAQRD-------------VAEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGT 67 (608)
T ss_dssp CEEEEEECSSC-------------CHHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESSHHHHHHHHHHSCCCCSE
T ss_pred CeEEEEEcCCc-------------hHHHHHHHHHHHHhcCCCcCceEEEecCCcEEEEeCCCcHHHHHHHhhccCCCCCE
Confidence 99999863211 1356778999999999999998753 468
Q ss_pred EEEEEeCC-----CCCCCCceEecCCCEEEEEcceecChhHHHHHh---CC---CCCcchHHHHHHHHHHhhccCC---C
Q 027500 54 TLAYTHQN-----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---GL---AKSANEVILVIEAYKALRDRAP---Y 119 (222)
Q Consensus 54 ~Lg~~r~~-----~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g~---~~~d~e~~~~~~~y~~~g~~g~---~ 119 (222)
+|||+|.. ...+.||+.+ ++++++|||+|+|+.+|+++| |+ +.+|+|++ +++|.+|-++|. +
T Consensus 68 ~igH~R~at~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~Lr~~L~~~g~~f~s~tDtEvi--~~l~~~~~~~g~~~~~ 143 (608)
T 2bpl_A 68 GIAHTRWATHGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVI--AHLVNWELKQGGTLRE 143 (608)
T ss_dssp EEEEEECCCSSSCCGGGCSCEEE--TTEEEEEEECCTTHHHHHHHHHHHTCCCSCCCHHHHH--HHHHHHHHTTCCCHHH
T ss_pred EEEEEccCCCCCCCccCCCCccC--CCEEEEEEEEEeCHHHHHHHHHhcCCCCCCCCHHHHH--HHHHHHHHhcCCCHHH
Confidence 99999932 2357899987 789999999999999999988 54 67788876 789988732232 3
Q ss_pred cHHHHHhcccCceEEEEEECCC-CEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhccccceecCC-------CCC
Q 027500 120 PPNHVVGHLSGYFAFIVYDKST-STLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACGKSLASFPQ-------VGG 191 (222)
Q Consensus 120 ~~~~~l~~L~G~fa~vi~d~~~-~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~~~pp-------~~~ 191 (222)
++.+++++|+|+|||++||..+ ++++++||+ |||||+.. ++.++||||.++|...+. .+..+|| .++
T Consensus 144 av~~~~~~l~G~fa~~i~d~~~~~~l~~aRd~---~PL~~g~~-~~~~~~aSe~~al~~~~~-~~~~l~~G~i~~i~~~~ 218 (608)
T 2bpl_A 144 AVLRAIPQLRGAYGTVIMDSRHPDTLLAARSG---SPLVIGLG-MGENFIASDQLALLPVTR-RFIFLEEGDIAEITRRS 218 (608)
T ss_dssp HHHHHGGGCCSSEEEEEEETTCTTCEEEEEEB---SCCEEEEC-SSCEEEESSGGGTTTTCC-EEEECCTTCEEEECSSC
T ss_pred HHHHHHHhhcCceEEEEEecCCCCEEEEEECC---CceEEEEe-CCeEEEEechHHHHhcCC-eEEEECCCeEEEEECCe
Confidence 4568999999999999999987 899999997 99999997 567999999999988765 4888998 455
Q ss_pred eEEEeC
Q 027500 192 LRSFEN 197 (222)
Q Consensus 192 ~~~~~~ 197 (222)
++.+..
T Consensus 219 ~~~~~~ 224 (608)
T 2bpl_A 219 VNIFDK 224 (608)
T ss_dssp EEEECS
T ss_pred EEEEeC
Confidence 666543
No 6
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*
Probab=99.92 E-value=3.4e-25 Score=206.69 Aligned_cols=128 Identities=19% Similarity=0.273 Sum_probs=106.0
Q ss_pred HcCCCCCcceEECCcEEEEEEeCCCCCCCCceEecC----CCEEEEEcceecChhHHHHHhCC---CCCcchHHHHHHHH
Q 027500 38 LQTNSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVK----DEIFCLFEGALDNLGSLRQQYGL---AKSANEVILVIEAY 110 (222)
Q Consensus 38 ~~RGpd~~~~~~~~~~~Lg~~r~~~~~~~QP~~~~~----~~~~lv~nG~I~N~~eL~~~lg~---~~~d~e~~~~~~~y 110 (222)
.+|+|+..+.++.. ....||+...+ ++++++|||+|||+.+|+++|++ +.+|+|++ +++|
T Consensus 40 ~~r~p~~~~~~~~~-----------~~~~QP~~~~~Pf~~~~~~lv~NGeIyN~~eLr~~L~~~f~t~sDtEvi--l~l~ 106 (513)
T 1jgt_A 40 PQGERSLAATLVHA-----------PSVAPDRAVARSLTGAPTTAVLAGEIYNRDELLSVLPAGPAPEGDAELV--LRLL 106 (513)
T ss_dssp TTGGGSCEEEEEEC-----------TTSCGGGGEEEECSSSSEEEEEEEEESCHHHHHHTSCSSCCCSSHHHHH--HHHH
T ss_pred ccCCCccccceeeC-----------CccCCCcccCCcCCCCCEEEEEEEEEeCHHHHHHHhCCCCCCCCHHHHH--HHHH
Confidence 45677776554422 13479987654 68999999999999999999853 67788876 7999
Q ss_pred HHhhccCCCcHHHHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCEEEEEechhhHhhhcc----------
Q 027500 111 KALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGHVAFADDADLLKGACG---------- 180 (222)
Q Consensus 111 ~~~g~~g~~~~~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~~~faSe~~aL~~~~~---------- 180 (222)
++|| .+++++|+|+|||++||.. +++++||++|+|||||+.. ++.++||||+++|..++.
T Consensus 107 ~~~g-------~~~~~~l~G~fA~~i~d~~--~l~~aRD~~G~kPLyy~~~-~~~~~faSe~~aL~~~~~~~~~~l~~~~ 176 (513)
T 1jgt_A 107 ERYD-------LHAFRLVNGRFATVVRTGD--RVLLATDHAGSVPLYTCVA-PGEVRASTEAKALAAHRDPKGFPLADAR 176 (513)
T ss_dssp HHHG-------GGGGGTCCEEEEEEEEETT--EEEEEECTTCCSCCEEEEE-TTEEEEESCHHHHHTC--CCCCCCTTSE
T ss_pred HHHh-------HHhHhhcCeeEEEEEEECC--EEEEEECCCCCceeEEEEe-CCEEEEcchHHHHHhccCcccccccCCC
Confidence 9998 7899999999999999974 4999999999999999997 578999999999988762
Q ss_pred -----ccceecCC
Q 027500 181 -----KSLASFPQ 188 (222)
Q Consensus 181 -----~~~~~~pp 188 (222)
+.+..+||
T Consensus 177 ~~t~~~~i~~l~p 189 (513)
T 1jgt_A 177 RVAGLTGVYQVPA 189 (513)
T ss_dssp ECSSCSSCEECCT
T ss_pred ccccccceEEcCC
Confidence 56888888
No 7
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*
Probab=99.88 E-value=1.4e-23 Score=195.45 Aligned_cols=125 Identities=14% Similarity=0.173 Sum_probs=106.7
Q ss_pred CcEEEEEEeC--CCCCCCCceEecCCCEEEEEcceecChh---HHHHHhC--C-CCCcchHHHHHHHHHHhhccCCCcHH
Q 027500 51 DNVTLAYTHQ--NESPLRQRSFAVKDEIFCLFEGALDNLG---SLRQQYG--L-AKSANEVILVIEAYKALRDRAPYPPN 122 (222)
Q Consensus 51 ~~~~Lg~~r~--~~~~~~QP~~~~~~~~~lv~nG~I~N~~---eL~~~lg--~-~~~d~e~~~~~~~y~~~g~~g~~~~~ 122 (222)
+.++|||+|. ....+.||+.+.+++++++ |+|||+. +|+++|. . +.+|+|++ +++|++|| .
T Consensus 26 ~~~~igh~R~~t~~~~~~QP~~~~~~~~~l~--GeI~N~~~~~eLr~~l~g~f~s~sDtEvi--l~l~~~~g-------~ 94 (503)
T 1q15_A 26 KGEALSNGYLFIEQNGHYQKCEMERGTAYLI--GSLYNRTFLIGLAGVWEGEAYLANDAELL--ALLFTRLG-------A 94 (503)
T ss_dssp EEEEETTEEEEEETTCCEEEEECSSSEEEEE--ECCSCHHHHHHHHTTTCGGGGGCCHHHHH--HHHHHHHC-------G
T ss_pred CceeEeeeeEEEcCCCCCCCcCcCCCeEEEE--EEEeCCCChHHHHHHhhCCCCCCChHHHH--HHHHHHHH-------H
Confidence 4789999993 3346899999876777777 9999999 9999883 2 67888886 79999998 7
Q ss_pred HHHhcccCceEEEEEECCCCEEEEEEcCCCCccEEEEEecCCE-----------------EEEEechhhHhhh--c----
Q 027500 123 HVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVPLYWGITADGH-----------------VAFADDADLLKGA--C---- 179 (222)
Q Consensus 123 ~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rPLyy~~~~~~~-----------------~~faSe~~aL~~~--~---- 179 (222)
++++.|+|+|||++||..++ ++++||++|+|||||+.. ++. ++||||+++|... +
T Consensus 95 ~~l~~l~G~fa~~i~d~~~~-l~~aRD~~G~rPL~y~~~-~~~~~t~~l~l~~~~~~~~~~~faSE~~al~~~~~~~~~T 172 (503)
T 1q15_A 95 NALALAEGDFCFFIDEPNGE-LTVITESRGFSPVHVVQG-KKAWMTNSLKLVTAAEGEGALWFEEEALVCQSLMRADTYT 172 (503)
T ss_dssp GGGGGCCSSEEEEEECTTSC-EEEEECSSSSSCCEEEES-SSEEEESCHHHHHHHHCTTSSCBCCHHHHTTCSCCCTTCC
T ss_pred HHHHHcCEEEEEEEEeCCCC-EEEEECCCCCeeEEEEEe-CCceecccccccccccCCcceEEecchHHHHhccCCCCCc
Confidence 89999999999999999878 999999999999999987 466 9999999999875 1
Q ss_pred -cccceecCC
Q 027500 180 -GKSLASFPQ 188 (222)
Q Consensus 180 -~~~~~~~pp 188 (222)
.+.+..+||
T Consensus 173 ~~~~v~~l~p 182 (503)
T 1q15_A 173 PVKNAQRLKP 182 (503)
T ss_dssp SBTTEEECCS
T ss_pred ccCCeEEECC
Confidence 346888888
No 8
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=99.83 E-value=1.9e-20 Score=161.95 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=94.9
Q ss_pred cEEEEEEeC-----CCCCCCCceEecCCCEEEEEcceecChhHHHHHh---C--------CCCCcchHHHHHHHHHHhhc
Q 027500 52 NVTLAYTHQ-----NESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY---G--------LAKSANEVILVIEAYKALRD 115 (222)
Q Consensus 52 ~~~Lg~~r~-----~~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l---g--------~~~~d~e~~~~~~~y~~~g~ 115 (222)
.++|||+|. ....+.||+.. ++++++|||+|+|+.+|+++| | .+.+|+|++ +++|..++.
T Consensus 82 ~~~igHvR~AT~g~~s~~n~qPf~~--g~~~~~HNG~I~N~~~Lr~~L~~~g~~~~f~~~~~~TDSEvi--~~l~~~~~~ 157 (274)
T 3mdn_A 82 GLFLSHVRASTGSCISRNNCHPFAA--RRWCFMHNGQVGGFEAFRKQADMAIADEFYTYRKGSTDSEVL--FLLALSEGL 157 (274)
T ss_dssp EEEEEEC------------CCCEEE--TTEEEEEEEEETTGGGGHHHHHHTSCHHHHTTCCSCCHHHHH--HHHHHHTTT
T ss_pred CEEEEEEccccCCCCcccCCCCccc--CCEEEEEeeEEcCHHHHHHHHHhhCCcceecCCCCCChHHHH--HHHHHHhhh
Confidence 478999993 12468999986 689999999999999998876 3 146778876 678866653
Q ss_pred cC-C-CcHHHHHhcccCc-----------eEEEEEECCCCEEEEEEcC-CCCccEEEEEecC--CEEEEEechhhHhhhc
Q 027500 116 RA-P-YPPNHVVGHLSGY-----------FAFIVYDKSTSTLFVASDQ-FGKVPLYWGITAD--GHVAFADDADLLKGAC 179 (222)
Q Consensus 116 ~g-~-~~~~~~l~~L~G~-----------fa~vi~d~~~~~l~~aRD~-~G~rPLyy~~~~~--~~~~faSe~~aL~~~~ 179 (222)
+. + +++.++++.|+|. |+|+++|. ++|+++||+ +|++||+|+...+ +.++||||. |...+
T Consensus 158 ~~~~~~al~~~l~~l~G~~~~~g~~~~~a~~~~~~d~--~~l~a~Rd~~~G~~Pll~~~~~~~~~~~~vASE~--l~~~~ 233 (274)
T 3mdn_A 158 EHDPHGALARAIARLEGLSRAHGTTPHMRLSAAFSDG--QTLYAARYSSDHIAPSVYYRYSHARQGWAVVSEP--LETDE 233 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHSCSSSEEEEEEEECS--SCEEEEEEESSSCCCCCEEEEETTTTEEEEESSC--C--CC
T ss_pred cCCHHHHHHHHHHHHHhHHhhcCcccCceEEEEEEcC--CEEEEEECCCCCCCCeEEEEEeCCCCEEEEEecc--cccCC
Confidence 21 1 3456899999998 99999984 789999998 9999977777633 679999998 43333
Q ss_pred cccceecCC
Q 027500 180 GKSLASFPQ 188 (222)
Q Consensus 180 ~~~~~~~pp 188 (222)
..+.++||
T Consensus 234 -~~~~~v~p 241 (274)
T 3mdn_A 234 -GDWTELRP 241 (274)
T ss_dssp -SCCEECCS
T ss_pred -ceEEEECc
Confidence 35889998
No 9
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1
Probab=99.74 E-value=1e-19 Score=155.89 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=92.2
Q ss_pred cEEEEEEeC-----CCCCCCCceEec--CCCEEEEEcceecChhHHHHHhCC--CCCcchHHHHHHHHHHhhcc----CC
Q 027500 52 NVTLAYTHQ-----NESPLRQRSFAV--KDEIFCLFEGALDNLGSLRQQYGL--AKSANEVILVIEAYKALRDR----AP 118 (222)
Q Consensus 52 ~~~Lg~~r~-----~~~~~~QP~~~~--~~~~~lv~nG~I~N~~eL~~~lg~--~~~d~e~~~~~~~y~~~g~~----g~ 118 (222)
+++|||+|. ....+.||+... .++++++|||.|.|+.+ +.++.. +.+|+|++ ++++.+...+ .+
T Consensus 72 ~~~IgHvR~AT~G~~~~~NahPf~~~~~~~~~a~aHNG~i~n~~~-r~~~~~~~s~TDSEvi--~~li~~~~~~~~~~~~ 148 (257)
T 1te5_A 72 ETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQP-KPGFYRPVGETDSEAA--FCDLLNRVRRAFPEPV 148 (257)
T ss_dssp EEEEEEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCC-CCCSSCCSSCCHHHHH--HHHHHHHHHHHCSSCC
T ss_pred cEEEEEeecCCCCCCCcCcCCCcEecCCCCeEEEEecCcccCchh-hhccCCcccCCHHHHH--HHHHHHHHHHhcCCCc
Confidence 479999992 234679999864 35799999999999998 665433 77888887 4555443211 11
Q ss_pred --CcHHHHHhccc------CceEEEEEECCCCEEEEEEc----------CCCCccEEE-------EE---ecCCEEEEEe
Q 027500 119 --YPPNHVVGHLS------GYFAFIVYDKSTSTLFVASD----------QFGKVPLYW-------GI---TADGHVAFAD 170 (222)
Q Consensus 119 --~~~~~~l~~L~------G~fa~vi~d~~~~~l~~aRD----------~~G~rPLyy-------~~---~~~~~~~faS 170 (222)
+++.++++.|. |.|++++.|. ++|+++|| ++|.|||+. +. ..+..++|||
T Consensus 149 ~~~a~~~al~~l~~~~~~~G~~n~~l~~g--~~l~a~rd~~L~~~~~~~p~g~rpL~~~~~~i~~g~~~~~~~~~~vvAS 226 (257)
T 1te5_A 149 PVEVLLPVLISACDEYRKKGVFNALISDG--DWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIAT 226 (257)
T ss_dssp CHHHHHHHHHHHHHHHHTTBCCEEEEESS--SCEEEECSSCEEEEEEESSCCCEEEECSSEEEEECCCSSTTCEEEEEES
T ss_pred hHHHHHHHHHHHHHHHHhcCcEEEEEEcC--CEEEEEEcCCceEEeecCCCcccccccccceeecccccCCCCCEEEEEe
Confidence 34456666665 9999999985 78999999 999999975 31 1123689999
Q ss_pred chhhHhhhccccceecCCC
Q 027500 171 DADLLKGACGKSLASFPQV 189 (222)
Q Consensus 171 e~~aL~~~~~~~~~~~pp~ 189 (222)
|. |.. .+.++++||.
T Consensus 227 E~--l~~--~~~wr~v~pG 241 (257)
T 1te5_A 227 EP--LTD--NENWTLQQSG 241 (257)
T ss_dssp SC--SSS--SSSCEEECTT
T ss_pred Cc--cCC--CCCeeEeCCC
Confidence 95 432 4568899983
No 10
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Probab=99.42 E-value=3e-13 Score=136.96 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=95.7
Q ss_pred CcEEEEEEeCC-----CCCCCCceEecCCCEEEEEcceecChhHHHHHh------------C----------C-CCCcch
Q 027500 51 DNVTLAYTHQN-----ESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQY------------G----------L-AKSANE 102 (222)
Q Consensus 51 ~~~~Lg~~r~~-----~~~~~QP~~~~~~~~~lv~nG~I~N~~eL~~~l------------g----------~-~~~d~e 102 (222)
++.+|||+|.. .-.+.||+. .++|||+|.|+..+++.+ | . +.+|+|
T Consensus 202 g~~aigH~RySTnt~p~w~~AQPf~------~laHNGeInn~~~nr~~m~are~~~~~~~~G~~l~~~~pii~~~~SDSe 275 (1479)
T 1ea0_A 202 SDFAIYHQRYSTNTFPTWPLAQPFR------MLAHNGEINTVKGNVNWMKAHETRMEHPAFGTHMQDLKPVIGVGLSDSG 275 (1479)
T ss_dssp BSEEEEEECCCSCSCCCSTTSSCCS------SEEEEECCTTHHHHHHHHHHHGGGCCCSTTGGGHHHHCCSSCTTCCHHH
T ss_pred eeEEEeeecccCCCCCCcccCCccE------EEEECChhhCHHHHHHHHHHhHhhhcCchhhhhHHhcCCcCCCCCCcHH
Confidence 46899999932 225689994 389999999999998552 1 1 678888
Q ss_pred HHHH-HHHHHHhhccCC-CcH-------------------------HHHHhcccCceEEEEEECCCCEEEEEEcCCCCcc
Q 027500 103 VILV-IEAYKALRDRAP-YPP-------------------------NHVVGHLSGYFAFIVYDKSTSTLFVASDQFGKVP 155 (222)
Q Consensus 103 ~~~~-~~~y~~~g~~g~-~~~-------------------------~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~G~rP 155 (222)
++.. ++++.+.|. .. +++ ..+++.++|.||+++.|. +.++++|||+|.||
T Consensus 276 vld~~lelL~~~g~-~l~~A~~~liPeaw~~~~~m~~~~~~fye~~~~~me~~dGp~slv~~dg--~~l~a~~DrnGlRP 352 (1479)
T 1ea0_A 276 SLDTVFEVMVRAGR-TAPMVKMMLVPQALTSSQTTPDNHKALIQYCNSVMEPWDGPAALAMTDG--RWVVGGMDRNGLRP 352 (1479)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHSCCCCC---CCCHHHHHHHHHHHHHCCCCCSSEEEEECSS--SEEEEECCTTCCSC
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHhCchhhcccccCCHHHHHHHHHHHHhhccCCCcEEEEEEeC--CEEEEEecCCCCcc
Confidence 7611 233222220 00 111 134679999999999885 89999999999999
Q ss_pred EEEEEecCCEEEEEechhhHhhhccccce--ecCCCCCeEEEe
Q 027500 156 LYWGITADGHVAFADDADLLKGACGKSLA--SFPQVGGLRSFE 196 (222)
Q Consensus 156 Lyy~~~~~~~~~faSe~~aL~~~~~~~~~--~~pp~~~~~~~~ 196 (222)
|.|+.++|+.+++|||..+|...+.+-++ .+. +|++....
T Consensus 353 l~~g~t~d~~~v~ASE~galdi~~a~~vrkg~l~-PGemv~id 394 (1479)
T 1ea0_A 353 MRYTITTDGLIIGGSETGMVKIDETQVIEKGRLG-PGEMIAVD 394 (1479)
T ss_dssp CEEEEETTSEEEECSSSTTSCCCGGGEEEEEECC-TTCEEEEE
T ss_pred eEEEEECCCEEEEEcccccccCcchheeeccCCC-CCeEEEEE
Confidence 99999866789999999999766665444 344 44554443
No 11
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Probab=99.33 E-value=4.1e-12 Score=129.05 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=94.9
Q ss_pred CCcEEEEEEeCCC-----CCCCCceEecCCCEEEEEcceecChhHHH------HH-----------h---C-C---CCCc
Q 027500 50 GDNVTLAYTHQNE-----SPLRQRSFAVKDEIFCLFEGALDNLGSLR------QQ-----------Y---G-L---AKSA 100 (222)
Q Consensus 50 ~~~~~Lg~~r~~~-----~~~~QP~~~~~~~~~lv~nG~I~N~~eL~------~~-----------l---g-~---~~~d 100 (222)
.+..+|||+|... -.+.||+. .++|||+|.|...++ +. + + . +.+|
T Consensus 197 ~g~~aigH~RySTnt~p~w~~AQPf~------~LaHNGeInt~~~nrnwm~aR~~~~~s~~~~g~~l~~~~p~i~~~~SD 270 (1520)
T 1ofd_A 197 TSNFAVYHRRFSTNTMPKWPLAQPMR------LLGHNGEINTLLGNINWMAAREKELEVSGWTKAELEALTPIVNQANSD 270 (1520)
T ss_dssp CBSEEEEEECCCSSSCCCGGGSSCCS------SEEEEECCTTHHHHHHHHHHHGGGCCCTTCCHHHHHHHCCSCCTTSCH
T ss_pred ceeEEEEEccccCCCCCCcccCCchh------eeEecchhhcHHHHHHHHHHHHHHhcCcccchhhHHhhCCcCCCCCCc
Confidence 3368999999432 24689984 389999999988887 21 1 2 2 6788
Q ss_pred chHHHH-HHHHHHhhccCC-CcH---------------------------HHHHhcccCceEEEEEECCCCEEEEEEcCC
Q 027500 101 NEVILV-IEAYKALRDRAP-YPP---------------------------NHVVGHLSGYFAFIVYDKSTSTLFVASDQF 151 (222)
Q Consensus 101 ~e~~~~-~~~y~~~g~~g~-~~~---------------------------~~~l~~L~G~fa~vi~d~~~~~l~~aRD~~ 151 (222)
+|++.. ++++.+.|. .. +++ ..+++.++|.|++++.|. +.++++|||+
T Consensus 271 Se~ld~~lelL~~~g~-~l~~A~~~liPeaw~~~~~m~~~~~~~~fyey~~~~me~~dGpaalv~~dg--~~l~a~~Drn 347 (1520)
T 1ofd_A 271 SYNLDSALELLVRTGR-SPLEAAMILVPEAYKNQPALKDYPEISDFHDYYSGLQEPWDGPALLVFSDG--KIVGAGLDRN 347 (1520)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHSCCCCTTCGGGTTCHHHHHHHHHHTTTCCCCCSSEEEEEECS--SEEEEEECTT
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHhCcchhcccccccccHHHHHHHHHHHHhcccCCCCEEEEEEeC--CEEEEEecCC
Confidence 888621 233333221 00 111 122578899999999985 8999999999
Q ss_pred CCccEEEEEecCCEEEEEechhhHhhhccccce--ecCCCCCeEEEe
Q 027500 152 GKVPLYWGITADGHVAFADDADLLKGACGKSLA--SFPQVGGLRSFE 196 (222)
Q Consensus 152 G~rPLyy~~~~~~~~~faSe~~aL~~~~~~~~~--~~pp~~~~~~~~ 196 (222)
|.|||.|+.++|+.+++|||..+|...+.+.++ .+. +|++....
T Consensus 348 GlRPl~~~~t~d~~~v~ASE~galdi~~a~~vrkg~l~-PGemv~id 393 (1520)
T 1ofd_A 348 GLRPARYCITKDDYIVLGSEAGVVDLPEVDIVEKGRLA-PGQMIAVD 393 (1520)
T ss_dssp CCSCCEEEEETTCCEEEESSTTCSCCCGGGEEEEEECC-TTCEEEEE
T ss_pred CCCceEEEEeCCCEEEEEcccccccCcchheeeccCCC-CCeEEEEE
Confidence 999999999866789999999999766665444 333 44554443
No 12
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=32.59 E-value=8.6 Score=29.63 Aligned_cols=26 Identities=19% Similarity=0.485 Sum_probs=20.7
Q ss_pred cCceEEEEEECCCCEEEEEEcCCCCccEE
Q 027500 129 SGYFAFIVYDKSTSTLFVASDQFGKVPLY 157 (222)
Q Consensus 129 ~G~fa~vi~d~~~~~l~~aRD~~G~rPLy 157 (222)
+|.|++++.+ .+.++-..++ |++|||
T Consensus 27 e~~~ScVv~~--~~~i~ts~~r-Gv~pL~ 52 (151)
T 1vk9_A 27 KKDLSLLAYS--GRSIFESKDS-GLKPVV 52 (151)
T ss_dssp HTTCSEEEES--SSEEEEECCS-TTHHHH
T ss_pred hCCeeEEEec--CCEEEEeCCc-ChHHHH
Confidence 4789999954 4678877775 999999
Done!