BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027501
(222 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224069122|ref|XP_002326280.1| predicted protein [Populus trichocarpa]
gi|222833473|gb|EEE71950.1| predicted protein [Populus trichocarpa]
Length = 221
Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/222 (82%), Positives = 207/222 (93%), Gaps = 1/222 (0%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M +K VLHWQPN GT+VN+QILNEV+QCVESINGVKEGRWKAT+T+YKP+LRDQS A E
Sbjct: 1 MPLKWVLHWQPNAGTTVNTQILNEVTQCVESINGVKEGRWKATVTYYKPILRDQSQAPEL 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PRDFLGI +PE PNKY+F+IR QRIVLEADS+IQTIMEKLQSYK RVAL FEGFQYQLGD
Sbjct: 61 PRDFLGISLPEQPNKYYFIIRGQRIVLEADSSIQTIMEKLQSYKSRVALYFEGFQYQLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
FQLRVGKV PTHS+NLRGI+MEVEYLP+SSI+KSRQ+MEEF++IWQEA+SKR+LPGHFM
Sbjct: 121 FQLRVGKVTPTHSDNLRGIIMEVEYLPLSSIDKSRQVMEEFVDIWQEAISKRSLPGHFMH 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
MEPNF+EYGLSDHYSSQHTAVQYATVMAQLIA+ QSVQ+ RN
Sbjct: 181 MEPNFVEYGLSDHYSSQHTAVQYATVMAQLIAT-QSVQAARN 221
>gi|225444764|ref|XP_002279553.1| PREDICTED: putative mediator of RNA polymerase II transcription
subunit 20-like [Vitis vinifera]
Length = 222
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 172/222 (77%), Positives = 203/222 (91%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M +K V HWQPN GT+VNSQ++NEVSQCVESINGVKEGRWKATLTFYKPM RDQ++ +E+
Sbjct: 1 MPLKWVFHWQPNAGTTVNSQMINEVSQCVESINGVKEGRWKATLTFYKPMFRDQAVPAEY 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PRDFLGI +PE PN+Y+F+IR+Q+IVLEADS+IQ IMEKLQSYK RV+L FEGFQYQLGD
Sbjct: 61 PRDFLGISLPEQPNRYYFIIRSQKIVLEADSSIQMIMEKLQSYKSRVSLTFEGFQYQLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
FQLRVGKV P+ SENLRGIV EVEYLP+SS+EKSRQI++ F+EIWQEA+SKR+LPGHFM
Sbjct: 121 FQLRVGKVAPSASENLRGIVFEVEYLPLSSMEKSRQILDGFVEIWQEAMSKRSLPGHFMH 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
+EPNF E+GLSDHY+SQHTAVQYATVMAQLI++VQ+ Q +RN
Sbjct: 181 IEPNFAEFGLSDHYTSQHTAVQYATVMAQLISAVQTAQGVRN 222
>gi|297738577|emb|CBI27822.3| unnamed protein product [Vitis vinifera]
Length = 223
Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/223 (77%), Positives = 203/223 (91%), Gaps = 1/223 (0%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLR-DQSLASE 59
M +K V HWQPN GT+VNSQ++NEVSQCVESINGVKEGRWKATLTFYKPM R DQ++ +E
Sbjct: 1 MPLKWVFHWQPNAGTTVNSQMINEVSQCVESINGVKEGRWKATLTFYKPMFRADQAVPAE 60
Query: 60 FPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLG 119
+PRDFLGI +PE PN+Y+F+IR+Q+IVLEADS+IQ IMEKLQSYK RV+L FEGFQYQLG
Sbjct: 61 YPRDFLGISLPEQPNRYYFIIRSQKIVLEADSSIQMIMEKLQSYKSRVSLTFEGFQYQLG 120
Query: 120 DFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFM 179
DFQLRVGKV P+ SENLRGIV EVEYLP+SS+EKSRQI++ F+EIWQEA+SKR+LPGHFM
Sbjct: 121 DFQLRVGKVAPSASENLRGIVFEVEYLPLSSMEKSRQILDGFVEIWQEAMSKRSLPGHFM 180
Query: 180 PMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
+EPNF E+GLSDHY+SQHTAVQYATVMAQLI++VQ+ Q +RN
Sbjct: 181 HIEPNFAEFGLSDHYTSQHTAVQYATVMAQLISAVQTAQGVRN 223
>gi|449446620|ref|XP_004141069.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20a-like [Cucumis sativus]
gi|449488087|ref|XP_004157936.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20a-like [Cucumis sativus]
Length = 223
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/223 (79%), Positives = 201/223 (90%), Gaps = 1/223 (0%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQ-SLASE 59
M +K VLHWQPN G++VNSQILNEVSQCVESI+GVK G+WKATLTFYKP+LRDQ S A+E
Sbjct: 1 MPLKWVLHWQPNAGSTVNSQILNEVSQCVESIHGVKGGKWKATLTFYKPILRDQNSPAAE 60
Query: 60 FPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLG 119
FPRDFLGI +PE PNKY+ +IR QRIVLEAD TIQ IMEKLQSYK+RVALNFEGFQYQLG
Sbjct: 61 FPRDFLGISLPEQPNKYYLIIRGQRIVLEADFTIQAIMEKLQSYKLRVALNFEGFQYQLG 120
Query: 120 DFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFM 179
DFQLRVGKVVP +SENLRGIVME+EYLPISS+EKSRQ+MEEF ++WQEA+SK +LPG FM
Sbjct: 121 DFQLRVGKVVPNNSENLRGIVMEIEYLPISSMEKSRQVMEEFFDVWQEAMSKSSLPGRFM 180
Query: 180 PMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
+E NF EYGLSD+Y+SQHTAVQY VMAQLIA+VQ+VQS RN
Sbjct: 181 HIESNFAEYGLSDYYTSQHTAVQYGNVMAQLIATVQAVQSARN 223
>gi|255551861|ref|XP_002516976.1| conserved hypothetical protein [Ricinus communis]
gi|223544064|gb|EEF45590.1| conserved hypothetical protein [Ricinus communis]
Length = 221
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/222 (80%), Positives = 200/222 (90%), Gaps = 1/222 (0%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M +K VLHWQPN GT+VN+QILNEVSQCVESINGVKEGRWKA LT YKPMLRDQSL EF
Sbjct: 1 MPLKWVLHWQPNAGTTVNTQILNEVSQCVESINGVKEGRWKAALTSYKPMLRDQSLTPEF 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PRDFLGI +PE PNKY+F+IR QR+V+EADS+IQTIMEKLQSYK RVAL FEGFQYQLGD
Sbjct: 61 PRDFLGISLPEQPNKYYFMIRGQRLVVEADSSIQTIMEKLQSYKSRVALLFEGFQYQLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
FQLRVGKVVP HSENLRGIVMEVEYLPISSIEK+R IMEEF++IWQEA+SKR+LPG FM
Sbjct: 121 FQLRVGKVVPNHSENLRGIVMEVEYLPISSIEKARPIMEEFVDIWQEAISKRSLPGQFMH 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
+E NF +YGL DHY+ QHTA+QYATV+AQLIA+ Q+VQ+ RN
Sbjct: 181 IETNFADYGLFDHYTPQHTALQYATVIAQLIAT-QTVQAARN 221
>gi|147781153|emb|CAN67376.1| hypothetical protein VITISV_017913 [Vitis vinifera]
Length = 242
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 170/218 (77%), Positives = 200/218 (91%), Gaps = 1/218 (0%)
Query: 6 VLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLR-DQSLASEFPRDF 64
V HWQPN GT+VNSQ++NEVSQCVESINGVKEGRWKATLTFYKPM R DQ++ +E+PRDF
Sbjct: 25 VFHWQPNAGTTVNSQMINEVSQCVESINGVKEGRWKATLTFYKPMFRADQAVPAEYPRDF 84
Query: 65 LGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLR 124
LGI +PE PN+Y+F+IR+Q+IVLEADS+IQ IMEKLQSYK RV+L FEGFQYQLGDFQLR
Sbjct: 85 LGISLPEQPNRYYFIIRSQKIVLEADSSIQMIMEKLQSYKSRVSLTFEGFQYQLGDFQLR 144
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPN 184
VGKV P+ SENLRGIV EVEYLP+SS+EKSRQI++ F+EIWQEA+SKR+LPGHFM +EPN
Sbjct: 145 VGKVAPSASENLRGIVFEVEYLPLSSMEKSRQILDGFVEIWQEAMSKRSLPGHFMHIEPN 204
Query: 185 FIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
F E+GLSDHY+SQHTAVQYATVMAQLI++VQ+ Q +RN
Sbjct: 205 FAEFGLSDHYTSQHTAVQYATVMAQLISAVQTAQGVRN 242
>gi|297822453|ref|XP_002879109.1| hypothetical protein ARALYDRAFT_481687 [Arabidopsis lyrata subsp.
lyrata]
gi|297324948|gb|EFH55368.1| hypothetical protein ARALYDRAFT_481687 [Arabidopsis lyrata subsp.
lyrata]
Length = 219
Score = 353 bits (906), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 162/219 (73%), Positives = 198/219 (90%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M +K VLHWQPN G++V+SQILNEV+QCVESINGVKEGRWKATL +YKPMLRDQ+ SEF
Sbjct: 1 MPVKWVLHWQPNQGSTVSSQILNEVTQCVESINGVKEGRWKATLNYYKPMLRDQANQSEF 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PRDFLGI + + PNKY+F+IR+QRIVLEADS+IQ IMEKLQSYK +VAL F+GFQYQLGD
Sbjct: 61 PRDFLGISLADQPNKYYFIIRSQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
F+LRVGKVVPTHSEN+RGIVMEVEYLPISS+EK++++MEEFLEIW EAL+KR+LPG F+
Sbjct: 121 FRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVN 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQS 219
++ NF+E+GL D+Y+ QHTAV+YA VMA +IA+VQ+V+
Sbjct: 181 IDLNFVEFGLGDNYTPQHTAVRYALVMAHMIATVQAVRG 219
>gi|30683816|ref|NP_180390.2| TATA-binding related factor (TRF) of subunit 20 of Mediator complex
[Arabidopsis thaliana]
gi|75127115|sp|Q6NPF4.1|MD20A_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit
20a
gi|38454106|gb|AAR20747.1| At2g28230 [Arabidopsis thaliana]
gi|38604010|gb|AAR24748.1| At2g28230 [Arabidopsis thaliana]
gi|330252999|gb|AEC08093.1| TATA-binding related factor (TRF) of subunit 20 of Mediator complex
[Arabidopsis thaliana]
Length = 219
Score = 345 bits (886), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 160/219 (73%), Positives = 194/219 (88%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M +K VLHWQPN G++V+SQILNE +QCVESINGVKEGRWKATL +YKPML+DQ+ EF
Sbjct: 1 MPVKWVLHWQPNQGSTVSSQILNEATQCVESINGVKEGRWKATLNYYKPMLKDQANQLEF 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PRDFLGI + + PNKY+F+IRTQRIVLEADS+IQ IMEKLQSYK +VAL F+GFQYQLGD
Sbjct: 61 PRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVALYFDGFQYQLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
F+LRVGKVVPTHSEN+RGIVMEVEYLPISS+EK++++MEEFLEIW EAL+KR+LPG F+
Sbjct: 121 FRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEALAKRSLPGKFVN 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQS 219
++ NF E+GL D Y+ QHTAV+YA VMA +IA+VQ+V+
Sbjct: 181 IDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQAVRG 219
>gi|388517899|gb|AFK47011.1| unknown [Lotus japonicus]
Length = 218
Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 156/215 (72%), Positives = 185/215 (86%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M I+ +LHWQP+ GT VNS LNE+SQCVE+INGVK+GRWK+TLTFY+P LRDQS+A++F
Sbjct: 1 MPIRWILHWQPHQGTVVNSHTLNEISQCVENINGVKDGRWKSTLTFYRPNLRDQSIATDF 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PRDFLGI + E P KY+F+IR +IV+EADS+I TIMEKLQSYK +VALNFEG QY+LGD
Sbjct: 61 PRDFLGISLMEQPTKYYFIIRGHKIVVEADSSILTIMEKLQSYKSKVALNFEGVQYKLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
FQLRV KVVP +ENLRGI+ME+EYLPISS+EK R IMEEF+EIW+E LSK++LPGHFM
Sbjct: 121 FQLRVIKVVPNQAENLRGILMEIEYLPISSVEKPRPIMEEFIEIWREVLSKKSLPGHFMR 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQ 215
EPNF EYGL D Y+ QHTAVQYA +AQLIASVQ
Sbjct: 181 AEPNFKEYGLGDTYTPQHTAVQYAAALAQLIASVQ 215
>gi|359807578|ref|NP_001241412.1| uncharacterized protein LOC100814806 [Glycine max]
gi|255647815|gb|ACU24367.1| unknown [Glycine max]
Length = 218
Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 148/215 (68%), Positives = 186/215 (86%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M I+ +LHWQPN G+ VNSQ+LNE+SQCVES+NGVKEGR KA+LTFY+P LRDQS+ +F
Sbjct: 1 MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDF 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PRDFLGI + E PNKY+F+IR Q+IVLEADS+I IMEKLQSYK +VAL+FEG Y+LGD
Sbjct: 61 PRDFLGISMLEQPNKYYFIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
FQ+RV KVVP+ +E+LRGI++E+EYLPISS+EKS+QI+EEF++IW+E +SK++L G FM
Sbjct: 121 FQMRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMH 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQ 215
EPN+ EYGLSD+Y+SQHTAVQYA +AQLI S Q
Sbjct: 181 TEPNYAEYGLSDNYTSQHTAVQYAAALAQLIQSAQ 215
>gi|217071418|gb|ACJ84069.1| unknown [Medicago truncatula]
gi|388496524|gb|AFK36328.1| unknown [Medicago truncatula]
Length = 218
Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 149/215 (69%), Positives = 183/215 (85%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M ++ +LHWQP+ G VNS ILNE+SQCVE++NGVK+GR KATLTFY+P LRDQSL+SEF
Sbjct: 1 MPVRWILHWQPSQGAVVNSHILNEISQCVENLNGVKDGRTKATLTFYRPNLRDQSLSSEF 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PRDFLGI + E PNKY+F+IR ++ +EADS+I TIMEKLQSYK +V LNFEG QY+LGD
Sbjct: 61 PRDFLGISLMEQPNKYYFIIRGHKLAVEADSSILTIMEKLQSYKSKVTLNFEGTQYKLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
FQ+R+ KVVP +ENLRGI+ME+EYLP SS+EK + IMEEF+EIW++ LSK++LPG FM
Sbjct: 121 FQVRMIKVVPNQAENLRGILMEIEYLPNSSVEKVKPIMEEFIEIWRDVLSKKSLPGQFMR 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQ 215
EP F+EYGLSDHY+ QHTAVQYA +AQLIASVQ
Sbjct: 181 TEPIFVEYGLSDHYTWQHTAVQYAAALAQLIASVQ 215
>gi|356547923|ref|XP_003542354.1| PREDICTED: putative mediator of RNA polymerase II transcription
subunit 20-like [Glycine max]
Length = 218
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 147/215 (68%), Positives = 185/215 (86%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M I+ +LHWQPN G+ VNSQ+LNE+SQCVES+NGVKEGR KA+LTFY+P LRDQS+ +F
Sbjct: 1 MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDF 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PRDFLGI + E PNKY+ +IR Q+IVLEADS+I IMEKLQSYK +VAL+FEG Y+LGD
Sbjct: 61 PRDFLGISMLEQPNKYYLIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
FQ+RV KVVP+ +E+LRGI++E+EYLPISS+EKS+QI+EEF++IW+E +SK++L G FM
Sbjct: 121 FQIRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMH 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQ 215
EPN+ EYGLSD+Y+SQHTAVQYA +AQLI S Q
Sbjct: 181 TEPNYAEYGLSDNYTSQHTAVQYAAALAQLIQSAQ 215
>gi|255625779|gb|ACU13234.1| unknown [Glycine max]
Length = 217
Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 147/215 (68%), Positives = 185/215 (86%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M I+ +LHWQPN G+ VNSQ+LNE+SQCVES+NGVKEGR KA+LTFY+P LRDQS+ +F
Sbjct: 1 MPIRCILHWQPNQGSVVNSQVLNEISQCVESLNGVKEGRCKASLTFYRPNLRDQSVTIDF 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PRDFLGI + E PNKY+ +IR Q+IVLEADS+I IMEKLQSYK +VAL+FEG Y+LGD
Sbjct: 61 PRDFLGISMLEQPNKYYLIIRGQKIVLEADSSILLIMEKLQSYKSKVALHFEGVLYKLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
FQ+RV KVVP+ +E+LRGI++E+EYLPISS+EKS+QI+EEF++IW+E +SK++L G FM
Sbjct: 121 FQIRVIKVVPSQAESLRGIMIEIEYLPISSVEKSKQILEEFIDIWKEVVSKKSLAGQFMH 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQ 215
EPN+ EYGLSD+Y+SQHTAVQYA +AQLI S Q
Sbjct: 181 TEPNYAEYGLSDNYTSQHTAVQYAAALAQLIQSAQ 215
>gi|15233681|ref|NP_192646.1| TATA-binding related factor (TRF) of subunit 20 of Mediator complex
[Arabidopsis thaliana]
gi|75181650|sp|Q9M0S0.1|MD20B_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit
20b
gi|7267550|emb|CAB78031.1| putative protein [Arabidopsis thaliana]
gi|332657319|gb|AEE82719.1| TATA-binding related factor (TRF) of subunit 20 of Mediator complex
[Arabidopsis thaliana]
Length = 219
Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 141/216 (65%), Positives = 185/216 (85%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M +K +LHWQPN G++ +SQILNEV+Q +ES+NGVKEG WKATL +YKPML+DQ+ +EF
Sbjct: 1 MPVKWLLHWQPNQGSTFSSQILNEVTQSIESLNGVKEGTWKATLNYYKPMLQDQANQAEF 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
PR+F+GI +PE P+KY+FVIR+QRIV+EADS+IQ IME LQSYK +++ FEG +YQLGD
Sbjct: 61 PREFVGISLPEEPDKYYFVIRSQRIVVEADSSIQMIMESLQSYKCKLSFYFEGLEYQLGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
F+LRVGKVVPTH+E +RG+VMEVEYLPISS+ ++++MEEFLEIWQEA+SKR+LPG F+
Sbjct: 121 FRLRVGKVVPTHAETIRGVVMEVEYLPISSMGMAKKLMEEFLEIWQEAMSKRSLPGKFVN 180
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQS 216
E NF ++GL D+Y+ QHTAV YA MA L+A++Q+
Sbjct: 181 KELNFEKFGLGDNYTPQHTAVGYAFFMANLMAAIQA 216
>gi|326514770|dbj|BAJ99746.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528331|dbj|BAJ93347.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 223
Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 126/219 (57%), Positives = 167/219 (76%), Gaps = 6/219 (2%)
Query: 4 KRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRD------QSLA 57
K ++HW PN G ++N+QIL+E C ES+ G K+GRWK ++ FY+PM RD Q+
Sbjct: 5 KWLMHWHPNPGVTLNTQILSEACGCAESLGGTKDGRWKTSIIFYRPMTRDGAGGAQQNQL 64
Query: 58 SEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQ 117
++ PR+ LG+ + E P YF ++R QR+VL+AD+ +MEKLQS+K RV LNFEGFQYQ
Sbjct: 65 ADVPRELLGVALHERPGLYFSILRNQRLVLQADAAFSQVMEKLQSFKARVNLNFEGFQYQ 124
Query: 118 LGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGH 177
LGDF LR+GK VP ++E LRGI+MEVEY P+SSIEKSR IM +F +IWQE L+K++LPG
Sbjct: 125 LGDFCLRIGKCVPNNTETLRGIMMEVEYYPLSSIEKSRAIMVDFFDIWQETLAKKSLPGR 184
Query: 178 FMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQS 216
F+ +E NF EYGLSDHYS QHTAVQYAT + QL+A+V++
Sbjct: 185 FIHVESNFSEYGLSDHYSFQHTAVQYATCLQQLMAAVRA 223
>gi|115479405|ref|NP_001063296.1| Os09g0443500 [Oryza sativa Japonica Group]
gi|51536008|dbj|BAD38088.1| unknown protein [Oryza sativa Japonica Group]
gi|113631529|dbj|BAF25210.1| Os09g0443500 [Oryza sativa Japonica Group]
gi|215693210|dbj|BAG88592.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222641676|gb|EEE69808.1| hypothetical protein OsJ_29541 [Oryza sativa Japonica Group]
Length = 230
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 128/226 (56%), Positives = 166/226 (73%), Gaps = 12/226 (5%)
Query: 2 TIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLAS--- 58
+K ++HW PN G ++NSQIL E C ES+ G K+GRWK ++ FY+ M RD + A+
Sbjct: 3 AVKWLMHWHPNQGATLNSQILAEACACAESLGGSKDGRWKTSIIFYRAMARDGASAAAAG 62
Query: 59 ---------EFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVAL 109
+ PR+ LG+ + E P YF ++R R+VL+ADS +MEKLQSYK RV L
Sbjct: 63 GGGPPQQHPDVPRELLGVALHERPGLYFSILRAHRLVLQADSAFPQVMEKLQSYKARVTL 122
Query: 110 NFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEAL 169
NFEGFQYQLGDF LR+GK VP +SE LRGI+MEVEY P+SSIEKSR +ME+F +IWQE +
Sbjct: 123 NFEGFQYQLGDFCLRIGKCVPNNSETLRGIMMEVEYYPLSSIEKSRAVMEDFFDIWQETV 182
Query: 170 SKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQ 215
+K++LPGHF+ +E NF EYGLSDHYS QHTAVQYAT + QL+A+V+
Sbjct: 183 AKKSLPGHFIHVESNFSEYGLSDHYSFQHTAVQYATCLQQLMAAVR 228
>gi|357158640|ref|XP_003578193.1| PREDICTED: putative mediator of RNA polymerase II transcription
subunit 20-like [Brachypodium distachyon]
Length = 225
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 126/221 (57%), Positives = 166/221 (75%), Gaps = 8/221 (3%)
Query: 4 KRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLA------ 57
K ++HW PN G ++NSQIL E C ES+ G K+GRWK ++ FY+PM RD + A
Sbjct: 5 KCLMHWHPNPGVTLNSQILAEACGCAESLGGTKDGRWKTSIIFYRPMTRDGTAAGGAQQQ 64
Query: 58 --SEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQ 115
++ R+ LG+ + E P YF ++R QR+VL+AD+ +MEKLQSYK RV LNFEGFQ
Sbjct: 65 QPNDVARELLGVALHERPGLYFSILRPQRLVLQADAAFPLVMEKLQSYKARVTLNFEGFQ 124
Query: 116 YQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLP 175
YQLGDF LR+GK VP +SE LRGI+MEVEY P+SSIEKSR IME+F +IWQE L+K++LP
Sbjct: 125 YQLGDFCLRIGKCVPNNSETLRGIMMEVEYYPLSSIEKSRAIMEDFFDIWQETLAKKSLP 184
Query: 176 GHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQS 216
G F+ +E NF +YGLSD+YS QHTA+QYAT + QL+A+V++
Sbjct: 185 GRFIHVESNFSDYGLSDNYSFQHTAIQYATCLQQLMAAVRA 225
>gi|218202227|gb|EEC84654.1| hypothetical protein OsI_31548 [Oryza sativa Indica Group]
Length = 230
Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 128/226 (56%), Positives = 165/226 (73%), Gaps = 12/226 (5%)
Query: 2 TIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLAS--- 58
+K ++HW PN G ++NSQIL E C ES+ G K+GRWK ++ FY+ M RD + A+
Sbjct: 3 AVKWLMHWHPNPGATLNSQILAEACACAESLGGSKDGRWKTSIIFYRAMARDGASAAAAG 62
Query: 59 ---------EFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVAL 109
+ PR+ LG+ + E P YF ++R R+VL+ADS +MEKLQSYK RV L
Sbjct: 63 GGGPPQQHPDVPRELLGVALHERPGLYFSILRAHRLVLQADSAFPQVMEKLQSYKARVTL 122
Query: 110 NFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEAL 169
NFEGFQYQLGDF LR+GK VP +SE LRGI+MEVEY P+SSIEKSR ME+F +IWQE +
Sbjct: 123 NFEGFQYQLGDFCLRIGKCVPNNSETLRGIMMEVEYYPLSSIEKSRAAMEDFFDIWQETV 182
Query: 170 SKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQ 215
+K++LPGHF+ +E NF EYGLSDHYS QHTAVQYAT + QL+A+V+
Sbjct: 183 AKKSLPGHFIHVESNFSEYGLSDHYSFQHTAVQYATCLQQLMAAVR 228
>gi|226529316|ref|NP_001144139.1| uncharacterized protein LOC100276988 [Zea mays]
gi|195637436|gb|ACG38186.1| hypothetical protein [Zea mays]
gi|224032871|gb|ACN35511.1| unknown [Zea mays]
Length = 225
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 121/218 (55%), Positives = 164/218 (75%), Gaps = 6/218 (2%)
Query: 3 IKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLAS---- 58
+K ++HW P+ G ++NSQIL E C ES+ G K+GRWK ++ FY+ M RD +
Sbjct: 4 VKWLMHWHPSPGATLNSQILAEACGCAESLGGSKDGRWKTSIFFYRAMTRDGAGGPAVQQ 63
Query: 59 --EFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQY 116
+ PR+ LG+ + E P YF ++R QR+VL+AD+ +MEKLQSY++RVALNFEGFQY
Sbjct: 64 HPDLPRELLGVALHERPGLYFSIVRAQRLVLQADAAFPQVMEKLQSYRIRVALNFEGFQY 123
Query: 117 QLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPG 176
QLGDF LR+GK VP +SE LRGI+MEVEY P++SIEKS+ +ME+F +IWQE ++K++LPG
Sbjct: 124 QLGDFCLRIGKCVPNNSEALRGIMMEVEYYPLTSIEKSKAVMEDFFDIWQETVAKKSLPG 183
Query: 177 HFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASV 214
F+ ++ NF EYGLSD YS QHTAVQYAT + QL+A+V
Sbjct: 184 QFIHVDSNFSEYGLSDQYSFQHTAVQYATCLQQLMAAV 221
>gi|4803958|gb|AAD29830.1| unknown protein [Arabidopsis thaliana]
Length = 170
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 122/170 (71%), Positives = 150/170 (88%)
Query: 50 MLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVAL 109
ML+DQ+ EFPRDFLGI + + PNKY+F+IRTQRIVLEADS+IQ IMEKLQSYK +VAL
Sbjct: 1 MLKDQANQLEFPRDFLGISLADQPNKYYFIIRTQRIVLEADSSIQLIMEKLQSYKSKVAL 60
Query: 110 NFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEAL 169
F+GFQYQLGDF+LRVGKVVPTHSEN+RGIVMEVEYLPISS+EK++++MEEFLEIW EAL
Sbjct: 61 YFDGFQYQLGDFRLRVGKVVPTHSENVRGIVMEVEYLPISSMEKAQKVMEEFLEIWNEAL 120
Query: 170 SKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQS 219
+KR+LPG F+ ++ NF E+GL D Y+ QHTAV+YA VMA +IA+VQ+V+
Sbjct: 121 AKRSLPGKFVNIDLNFGEFGLGDIYTPQHTAVRYALVMAHMIATVQAVRG 170
>gi|302786512|ref|XP_002975027.1| hypothetical protein SELMODRAFT_102449 [Selaginella moellendorffii]
gi|302791361|ref|XP_002977447.1| hypothetical protein SELMODRAFT_107075 [Selaginella moellendorffii]
gi|300154817|gb|EFJ21451.1| hypothetical protein SELMODRAFT_107075 [Selaginella moellendorffii]
gi|300157186|gb|EFJ23812.1| hypothetical protein SELMODRAFT_102449 [Selaginella moellendorffii]
Length = 223
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 110/211 (52%), Positives = 160/211 (75%)
Query: 5 RVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDF 64
RVLHWQP+ G V SQ L ++ + +ES+NGV+ GRW+ T ++P RDQ++A + ++
Sbjct: 11 RVLHWQPSAGAQVTSQTLVDLFRSIESMNGVRTGRWQITAAQHRPFTRDQAMAIDCAKEL 70
Query: 65 LGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLR 124
LG+ E +K++FV+R +R+V+EADS+IQ IMEKLQ Y+ R+++ FEGFQYQLGDFQL+
Sbjct: 71 LGVAFSEFASKHYFVLRAERMVVEADSSIQAIMEKLQVYRNRLSMVFEGFQYQLGDFQLK 130
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPN 184
G+ V + +ENLRGIV+EVEY P+SSIEK+RQ+M+EF+++WQEA+S +++ G +EPN
Sbjct: 131 AGRAVLSQAENLRGIVLEVEYSPVSSIEKTRQMMQEFVDLWQEAISAQSMSGRISLLEPN 190
Query: 185 FIEYGLSDHYSSQHTAVQYATVMAQLIASVQ 215
F EY LSD Y+ QHTA+QY + A ++ Q
Sbjct: 191 FAEYALSDTYTWQHTALQYIFLFAYFLSQSQ 221
>gi|148907366|gb|ABR16817.1| unknown [Picea sitchensis]
Length = 211
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 153/213 (71%), Gaps = 2/213 (0%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M +KR+ WQPN G + Q+ + +C+E N +E R KA + Y+P+L++++ +
Sbjct: 1 MPVKRLYFWQPNAGVPLTKQMFVLLCKCIEEANASRESRVKANVVQYRPILKEENQRVDC 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
RDFLGI E P+K+FFVIR R+V+E+DS + +I+EKLQSY+ +AL FEG QY+ GD
Sbjct: 61 VRDFLGISFEEQPDKHFFVIRANRLVVESDSNLPSILEKLQSYRKAIALAFEGVQYRFGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
FQL+V +V + +E L+ +VMEVEYLP+SS+EK+R +M+EFLE+WQE +S ++ PGH
Sbjct: 121 FQLKVFRV--SQTETLKAVVMEVEYLPLSSLEKTRVLMDEFLELWQEMISLKSPPGHLFN 178
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMAQLIAS 213
++PNF EY LSD YS QHTAV Y+ MAQ +++
Sbjct: 179 IDPNFGEYRLSDEYSWQHTAVLYSNAMAQAMSN 211
>gi|168037708|ref|XP_001771345.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677434|gb|EDQ63905.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 212
Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 97/208 (46%), Positives = 153/208 (73%), Gaps = 4/208 (1%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
MT+K + +WQP++G +++SQ L+ + +E+++GVK RW+ T + ++P R+ E
Sbjct: 1 MTVKWLYYWQPSIGVTMSSQTLSIAIKRIEALHGVKTSRWQITASQFRPNQREPVPLVEC 60
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGD 120
R+ LG++ E P+KY+F +R + +V+EAD+T+Q IMEKLQ Y+ R+ + FEGFQY+LGD
Sbjct: 61 ARELLGVVFSEVPDKYYFALRQEHMVVEADATMQAIMEKLQVYRNRLTILFEGFQYELGD 120
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
F ++ G+ V H+ENLRGIV+EV+Y P+SS+E+SR+++++F+E+WQ K G F+P
Sbjct: 121 FHIKAGRAVLAHTENLRGIVLEVDYKPLSSVEQSRRVVQDFMEVWQ----KGETTGQFVP 176
Query: 181 MEPNFIEYGLSDHYSSQHTAVQYATVMA 208
++PNF E+ L D YS QHTA+QY T+MA
Sbjct: 177 LDPNFSEFNLPDLYSWQHTALQYVTLMA 204
>gi|297813217|ref|XP_002874492.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320329|gb|EFH50751.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 107
Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/107 (67%), Positives = 94/107 (87%)
Query: 50 MLRDQSLASEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVAL 109
MLRDQ+ +EFPR+FLG+ +P+ +KY+FV+R+QRIV++ADS+IQ IME L+SYK +++
Sbjct: 1 MLRDQANQAEFPREFLGVSLPKESSKYYFVVRSQRIVVDADSSIQMIMENLESYKCKLSF 60
Query: 110 NFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQ 156
FEGFQYQLGDFQ+RVGKVVP H+E +RGIVMEVEYLPISSIE +R+
Sbjct: 61 YFEGFQYQLGDFQVRVGKVVPAHAETVRGIVMEVEYLPISSIEMARK 107
>gi|224134386|ref|XP_002327825.1| predicted protein [Populus trichocarpa]
gi|222836910|gb|EEE75303.1| predicted protein [Populus trichocarpa]
Length = 90
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 84/98 (85%), Gaps = 10/98 (10%)
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPN 184
VGKV PTHS+NLRGI+MEVEYLP+SS++KSRQ+MEEF++IWQEA+SKR+LPGHFM MEPN
Sbjct: 3 VGKVTPTHSDNLRGIIMEVEYLPLSSMDKSRQVMEEFVDIWQEAISKRSLPGHFMHMEPN 62
Query: 185 FIEYGLSDHYSSQHTAVQYATVMAQLIASVQSVQSMRN 222
F+ YGLSDH YATVMAQLIA+ QSVQ+ RN
Sbjct: 63 FVGYGLSDH---------YATVMAQLIAT-QSVQAARN 90
>gi|414885667|tpg|DAA61681.1| TPA: hypothetical protein ZEAMMB73_988577 [Zea mays]
Length = 179
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 6/118 (5%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLAS-- 58
+ +R++HW P+ G ++NSQIL E C ES+ G K+GRWK ++ FY+ M RD +
Sbjct: 27 FSARRLMHWHPSPGATLNSQILAEACGCAESLGGSKDGRWKTSIFFYRAMTRDGAGGPAV 86
Query: 59 ----EFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFE 112
+ PR+ LG+ + E P YF ++R QR+VL+AD+ +MEKLQSY++RVALNFE
Sbjct: 87 QQHPDLPRELLGVALHERPGLYFSIVRAQRLVLQADAAFPQVMEKLQSYRIRVALNFE 144
>gi|15226316|ref|NP_180369.1| uncharacterized protein [Arabidopsis thaliana]
gi|20197955|gb|AAM15329.1| unknown protein [Arabidopsis thaliana]
gi|330252976|gb|AEC08070.1| uncharacterized protein [Arabidopsis thaliana]
Length = 70
Score = 87.4 bits (215), Expect = 4e-15, Method: Composition-based stats.
Identities = 41/68 (60%), Positives = 56/68 (82%), Gaps = 1/68 (1%)
Query: 151 IEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ-YATVMAQ 209
+E +R++MEEFLEIW EAL+KR+LPG F+ + NF E+GL D+Y+ QHTAV+ YA VMA
Sbjct: 1 MEIARKVMEEFLEIWNEALAKRSLPGKFVNKDLNFGEFGLGDNYTPQHTAVRNYALVMAH 60
Query: 210 LIASVQSV 217
+IA+VQ+V
Sbjct: 61 MIATVQAV 68
>gi|330793830|ref|XP_003284985.1| hypothetical protein DICPUDRAFT_86511 [Dictyostelium purpureum]
gi|325085106|gb|EGC38520.1| hypothetical protein DICPUDRAFT_86511 [Dictyostelium purpureum]
Length = 196
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 16/195 (8%)
Query: 21 ILNEVSQCVESINGVK-EGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFV 79
+L E+S+ +E + GVK W + + Y + D S + PRDF ++ E P K F V
Sbjct: 12 LLPEISKRIEFLGGVKVSSTWSISCSLYLERVPDGSNLN--PRDFYLLLFDEKPKKCFVV 69
Query: 80 IRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGI 139
R ++E D + +I+EK SY+ R + G +Y+LGDF +R+G +V +RGI
Sbjct: 70 SRDT--IVETDREMVSILEKTNSYRKRQTTDILGSKYELGDFIIRIGPIV--ARTEVRGI 125
Query: 140 VMEVEYL----PISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYS 195
++EVEY+ P++S +++ EF+ + + P LS YS
Sbjct: 126 LVEVEYIACSSPVTSPFNCTKLLSEFINYNLGPFPEPIQTSYDFSAYPT-----LSKTYS 180
Query: 196 SQHTAVQYATVMAQL 210
HT+ QY ++ +
Sbjct: 181 DLHTSYQYVNLLKTI 195
>gi|307111162|gb|EFN59397.1| hypothetical protein CHLNCDRAFT_137890 [Chlorella variabilis]
Length = 218
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/218 (20%), Positives = 97/218 (44%), Gaps = 13/218 (5%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M + +L+W G + + + +S + + RW A + + + A +
Sbjct: 1 MGVHLLLYWTAADGAA-RREAYDALSDAILCLGSSSSSRWTAQAAALRRV--QAAAADDL 57
Query: 61 PR--------DFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFE 112
P + + + P++ F + R R VL+A + +Q +++L +K R ++ E
Sbjct: 58 PSVRAAGSEVSLHRVSLSDEPDQLFLLSRAARQVLQAGADMQAFLDRLALFKARGSVQLE 117
Query: 113 GFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKR 172
G Q+ +GDF++ + + V +N G+ +++ Y P+ + ++++ E+ QEA
Sbjct: 118 GVQHAVGDFRISLARAVQAPQQNFLGLAVDLCYQPLDDAALAGPMLQDLAEVLQEA--AE 175
Query: 173 TLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQL 210
G + + L + +H A Q+ +MAQL
Sbjct: 176 AAGGKLRRVAEGTSAFQLPPVFGPRHRAAQHVQLMAQL 213
>gi|281209513|gb|EFA83681.1| putative mediator complex subunit 20 [Polysphondylium pallidum
PN500]
Length = 195
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 93/194 (47%), Gaps = 17/194 (8%)
Query: 22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIR 81
+ E+ + +E + G++ W + + Y L D S + PR+F + E K + V
Sbjct: 10 IKELEKKIEFLGGIRVSSWSISCSLYLERLPDGSPNA--PREFHLLTFDEKIKKSYMV-- 65
Query: 82 TQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVM 141
+Q V+EAD + +I+EK SYK R G +Y++GDF +R+G +V + +++ I +
Sbjct: 66 SQYTVVEADREVVSILEKTNSYKKRQTHEISGSKYEIGDFIIRIGPIV--LNADVKAIAV 123
Query: 142 EVEYLPISSIEKS----RQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEY-GLSDHYSS 196
EVEY S S +++ EF+ P + +F + L +YS
Sbjct: 124 EVEYTACSVTSTSPFNASKLLSEFIS------GNLGFPADQVQTSYDFSAFPALPRNYSE 177
Query: 197 QHTAVQYATVMAQL 210
HT++QY + L
Sbjct: 178 LHTSIQYVNLFKSL 191
>gi|281207018|gb|EFA81202.1| hypothetical protein PPL_06039 [Polysphondylium pallidum PN500]
Length = 821
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 17/192 (8%)
Query: 18 NSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYF 77
N + E+ + +E + G++ W + + Y L D S + PR+F + E K +
Sbjct: 8 NGDNIKELEKKIEFLGGIRVSPWSISCSLYLERLPDGSPNA--PREFHLLTFDEKIKKSY 65
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLR 137
V +Q V+EAD + +I+EK SYK R G +Y++GDF +R+G +V + +++
Sbjct: 66 MV--SQYTVVEADREVVSILEKTNSYKKRQTHEISGNKYEIGDFIIRIGPIV--LNADVK 121
Query: 138 GIVMEVEYLPISSIEKS----RQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEY-GLSD 192
I +EVEY S S +++ EF+ P + +F + L
Sbjct: 122 AIAVEVEYTACSVTSTSPFNATKLLSEFIS------GNLGFPADQVQTSYDFSAFPALPR 175
Query: 193 HYSSQHTAVQYA 204
+YS HT++QY+
Sbjct: 176 NYSELHTSIQYS 187
>gi|440804265|gb|ELR25142.1| hypothetical protein ACA1_288630, partial [Acanthamoeba castellanii
str. Neff]
Length = 210
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 51/208 (24%)
Query: 29 VESINGVKEGRWKATLTFY---------KP-----------MLRDQSLASEFPRDFLGIM 68
V+ ++G K GRW T T Y P +L++ SL+ + G
Sbjct: 21 VKRLHGRKLGRWNLTCTLYLHSAAGSLLAPDGSVMAQEQLYLLKEDSLSQKDGDKTAG-- 78
Query: 69 VPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKV 128
+C + Q ++EA ++ I+EK++ Y R + G QY++GDF ++VG +
Sbjct: 79 --KC------CLMAQNTIIEAGLEMEQILEKIKLYNPRQTVTIRGMQYEVGDFVVKVGSI 130
Query: 129 VPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNF--- 185
+ + RG+++EVEY P QI++ F+ G+ P F
Sbjct: 131 ML--GDTTRGVILEVEYRPCMIPNGCSQILQSFI-------------GNLGPFNAPFSAN 175
Query: 186 IEYG---LSDHYSSQHTAVQYATVMAQL 210
+ YG L YS+QHTA+QY + L
Sbjct: 176 VNYGGVTLPRLYSAQHTALQYVRLFQGL 203
>gi|66803368|ref|XP_635527.1| hypothetical protein DDB_G0290781 [Dictyostelium discoideum AX4]
gi|74851683|sp|Q54FL3.1|MED20_DICDI RecName: Full=Putative mediator of RNA polymerase II transcription
subunit 20; AltName: Full=Mediator complex subunit 20
gi|60463852|gb|EAL62024.1| hypothetical protein DDB_G0290781 [Dictyostelium discoideum AX4]
Length = 195
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 22 LNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIR 81
L E+++ +E + G+K + Y + D S + PR+F ++ E P K F V R
Sbjct: 13 LPEMTKRIEFLGGIKVSTGTINCSLYLERVPDGS--NLIPREFHLLLYDEKPKKCFTVCR 70
Query: 82 TQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVM 141
++E D + +I+EK SYK R +Y+LGDF +RVG +V +RGI++
Sbjct: 71 DT--IVETDREMVSILEKTNSYKKRQTTEALISKYELGDFIIRVGPIV--FRTEIRGILV 126
Query: 142 EVEY----LPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPM-EP-----NFIEY-GL 190
EVEY P++S +++ EF+ G+ P EP +F Y L
Sbjct: 127 EVEYTACSTPVTSPFNCTKLLSEFIN------------GNLGPFPEPIQTSFDFSAYPTL 174
Query: 191 SDHYSSQHTAVQYATVM 207
YS HT+ QY +
Sbjct: 175 PKSYSDLHTSYQYVNLF 191
>gi|384483349|gb|EIE75529.1| hypothetical protein RO3G_00233 [Rhizopus delemar RA 99-880]
Length = 204
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 105/205 (51%), Gaps = 13/205 (6%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEF 60
M I ++ W+ G + I V++ S+ G G W + ++ + +++++ +
Sbjct: 1 MGITCLVRWKNATGMRDFTFIAEHVTK---SLQGKNTGPWSLSFKVFRDINNNKAVSLKD 57
Query: 61 PRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQS-YKMRVALNFEGFQYQLG 119
+ + + + P + ++ +V+EA ++ I+ +L++ +++R + EG Y++G
Sbjct: 58 SKLLYQVSLGQQPGNVYCMVDGS-VVVEAGKEMEIILSRLKNLWQLRQNVTIEGTSYEIG 116
Query: 120 DFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFM 179
DF LRV ++ +G+++EV+Y P S+ + ++ +EF++ ++ +
Sbjct: 117 DFTLRVANILL--GSTYKGLLLEVDYHPCSTPNNASELFKEFVQSIVPPTAQLSC----- 169
Query: 180 PMEPNFIEYGLSDH-YSSQHTAVQY 203
E N+ GLS+H +++ HT+ QY
Sbjct: 170 EYEYNYEAVGLSNHEFTTAHTSYQY 194
>gi|428178649|gb|EKX47523.1| hypothetical protein GUITHDRAFT_106510 [Guillardia theta CCMP2712]
Length = 297
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 39/209 (18%)
Query: 30 ESINGVKEGRWKATLTFYK-PMLRDQSLASEFPRDFLGIMVPECPNKYFFVIR--TQRIV 86
E++ K +WK T Y+ P +A + FL + + P+K + +IR + V
Sbjct: 27 ETLGAKKLNKWKTQTTLYRRPTPGGDKVAGDV---FLVNFLSDTPDKVYMIIRQGEEDKV 83
Query: 87 LEADSTIQTIMEKLQS---------YKMRVALNFEGFQYQLGDFQLRVGKVV-------- 129
+EA S+ I + + Y+ + ++ EG+ Y +GDF +RVG VV
Sbjct: 84 MEAGSSFMQIWSMINATSTGGGPALYEQKSSMTVEGWAYDMGDFVMRVGSVVIRSQAQNR 143
Query: 130 ----PTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNF 185
S+ +G V+EVEY+P + Q++ EF+ + + + G F P+
Sbjct: 144 PEERAGRSDAFKGAVLEVEYVPSADRGDCSQLINEFVYCQPDGPTAVAVTG-FRPVTNVI 202
Query: 186 IEYGL-----------SDHYSSQHTAVQY 203
G+ + Y+++H A QY
Sbjct: 203 ATKGIGGMASLHWQTRTKEYTNEHRAQQY 231
>gi|302846809|ref|XP_002954940.1| hypothetical protein VOLCADRAFT_95836 [Volvox carteri f.
nagariensis]
gi|300259703|gb|EFJ43928.1| hypothetical protein VOLCADRAFT_95836 [Volvox carteri f.
nagariensis]
Length = 241
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 62 RDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDF 121
RD + + P+ F + R + VLE +S + ++EK + ++A+ EG Y GDF
Sbjct: 74 RDTWAVTFRDAPDVVFLLQRPECKVLECESAVMRLLEKKLEFAKQMAVRVEGHTYTKGDF 133
Query: 122 QLRVGKVV-PTHS-ENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALS 170
LR+ HS + L G +EVEYLP+SS+ + ++ E L++ ++ ++
Sbjct: 134 VLRLCTATQAIHSTQALLGYCLEVEYLPVSSMSSAEGMLGELLDLMKQLMN 184
>gi|320169816|gb|EFW46715.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 262
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 86 VLEADSTIQTIMEKLQS-YKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVE 144
VLE D + +M L++ Y+ R + EG +Y +GDF +RVG V+ S+ RGI +EVE
Sbjct: 142 VLEVDKEFEAVMGWLKTVYQERRPVRIEGSRYDIGDFSVRVGSVI--VSQQPRGIAVEVE 199
Query: 145 YLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYA 204
Y P + ++ +++EFL++ + + + PN ++ H A Q A
Sbjct: 200 YKPAVAPDRCNGLLQEFLQLILPGAGVASFDYSLVHLAPN--------TFTPAHAAYQVA 251
Query: 205 TVMA 208
V++
Sbjct: 252 AVLS 255
>gi|303271361|ref|XP_003055042.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463016|gb|EEH60294.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 222
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 36/194 (18%)
Query: 36 KEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPN---------------KYFFVI 80
K RW A +T R +S ++ P FL + + + + V+
Sbjct: 32 KTTRWAAEVT-----TRKRSTEADAPGMFLALGAKDVADEVHSCVLHHGESGKERTVLVL 86
Query: 81 RTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLR--- 137
R ++ +E ++ + + +++++ EG + GDF +RVG+V EN++
Sbjct: 87 RAEKRCVEGAVPVKEYLSRCRNHRVTHRSKIEGVGFSAGDFDVRVGRV-----ENMQGSY 141
Query: 138 -GIVMEVEYLPISSIEKSRQIMEEFL----EIWQEALSKRTLPGHFMPMEPNFI--EYGL 190
G V+E+EY+P++ ++ ++EEF E A +R L G + P + YGL
Sbjct: 142 AGAVIEIEYVPVTDAAQAAVVLEEFAGYLAEAVAAAEERRGLGGGTLAPTPEALTRSYGL 201
Query: 191 SDH-YSSQHTAVQY 203
+ H AV Y
Sbjct: 202 DGALFEDAHLAVTY 215
>gi|328875204|gb|EGG23569.1| putative mediator complex subunit 20 [Dictyostelium fasciculatum]
Length = 223
Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Query: 24 EVSQCVESINGVK-EGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVPECPNKYFFVIRT 82
E+++ +E + G+K W + Y + + + R+F + E K + V T
Sbjct: 11 EITKRIEFLGGIKVSSNWMISCALYLERIPEGTQVQ--AREFYLLSFDEEQKKSYIV--T 66
Query: 83 QRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
Q V E D I +I+EK SYK R G +Y++GDF ++ G + T RGI++E
Sbjct: 67 QNNVSEVDRDIVSILEKTNSYKKRQVTEVYGVKYEIGDFTVKFGPI--TLRAETRGILVE 124
Query: 143 VEY----LPISSIEKSRQIMEEFL 162
VEY + +S S +++ EF+
Sbjct: 125 VEYCASLVTTASPFNSSKLLSEFI 148
>gi|449676619|ref|XP_002163639.2| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Hydra magnipapillata]
Length = 202
Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 95/200 (47%), Gaps = 16/200 (8%)
Query: 11 PNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFLGIMVP 70
P V ++Q+++ + + + K G W + + ++Q ++ F +
Sbjct: 10 PVVEGCTSNQVIDSLKARLGVLGADKAGSWFVECEAFHSVKQNQENVAKM---FYLMHSS 66
Query: 71 ECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKM-RVALNFE--GFQYQLGDFQLRVGK 127
ECP+ F ++ V+ A+++I +I+ KL + + R E G ++ LGDF +++G
Sbjct: 67 ECPSLSFSLLENDTCVV-AENSINSIISKLSDFYLPRKGSKTEAKGSRFTLGDFIIKIGT 125
Query: 128 VVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIE 187
+ T + + +G+V E+ Y P S + I++EF+ ++ L+ +P P +
Sbjct: 126 I--TQASSFKGVVAEIHYAPCSDPLQCWCILDEFV---RDILAVNVT----LPSPPKTLV 176
Query: 188 YGLSDHYSSQHTAVQYATVM 207
S+ +S T +QY ++
Sbjct: 177 DKKSNLFSVADTIIQYLEII 196
>gi|443724231|gb|ELU12343.1| hypothetical protein CAPTEDRAFT_220200 [Capitella teleta]
Length = 229
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 71 ECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGK 127
E P F V+ + L AD +M K++ + K + +G +Y+ GDF ++VG
Sbjct: 84 EQPATCFAVLDSGN-CLVADLQFDALMNKIKMFYIQKKNARVEAKGLRYEYGDFIIKVGS 142
Query: 128 VVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFL 162
VV S + +G+++EVEY+P + + +M EF+
Sbjct: 143 VVLGQSTSFKGVIVEVEYMPAVVVSECFGLMREFM 177
>gi|325192395|emb|CCA26835.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 227
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 83 QRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENL-RGIVM 141
QR++LE I+++ + Y ++ FEG +Y +GDF + V + + N+ RGIV+
Sbjct: 99 QRMLLEYGLEGANILQQSEIYASKLDGQFEGLRYVVGDFTVSVCTFMSRN--NIPRGIVV 156
Query: 142 EVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAV 201
E++Y P + + +EF+++ + R P + + + GLS YS +HTA+
Sbjct: 157 EIQYSPCYEVPAVETLFDEFMQMLAPNTAIRK-P--IVNLTAYYQSVGLSSVYSLKHTAL 213
Query: 202 QY 203
QY
Sbjct: 214 QY 215
>gi|157116862|ref|XP_001652880.1| hypothetical protein AaeL_AAEL001260 [Aedes aegypti]
gi|122118710|sp|Q17LR9.1|MED20_AEDAE RecName: Full=Mediator of RNA polymerase II transcription subunit
20; AltName: Full=Mediator complex subunit 20
gi|108883408|gb|EAT47633.1| AAEL001260-PA [Aedes aegypti]
Length = 219
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 82 TQRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRG 138
T++I L D +M ++ + K + + +G +++ GDF +++G V T S+N +G
Sbjct: 77 TKQIPLVTDGLFDLLMTRISPVYTSKKQTKIESKGPRFEFGDFLIKLGSV--TMSQNFKG 134
Query: 139 IVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHF 178
+++EVEY P ++M EFL+ + + T+P +F
Sbjct: 135 VLVEVEYRPCLVASSCWELMREFLQGFLGSNVSNTIPAYF 174
>gi|290995596|ref|XP_002680369.1| predicted protein [Naegleria gruberi]
gi|284093989|gb|EFC47625.1| predicted protein [Naegleria gruberi]
Length = 307
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 43 TLTFYKPMLRDQSLASEFPRDFLGIMVPECP----NKYFFVIRTQRIVLEADSTIQTIME 98
TL F +L+ +S P++ ++ P +K FF++ Q I++ + + I E
Sbjct: 112 TLKFRGALLQ-ESFDFNQPKEVFNLVPPSLELKSIDKIFFLLDKQ-ILVTSTNFKDMICE 169
Query: 99 KLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIM 158
KL+ Y V + EG + GDF +RVG + ++ RGI+++VEY P S ++M
Sbjct: 170 KLKRYTEFVKVTIEGEILKFGDFTVRVG--IYSYGTKKRGILIDVEYSPCSYCYLFEELM 227
Query: 159 EEFLEIWQEALSKRTLPG 176
++F+ ++ + S P
Sbjct: 228 KDFMTLFVDFDSNTPTPS 245
>gi|255080658|ref|XP_002503902.1| predicted protein [Micromonas sp. RCC299]
gi|226519169|gb|ACO65160.1| predicted protein [Micromonas sp. RCC299]
Length = 244
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 73 PN-KYFFVIRTQRIVLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPT 131
PN + V+R +R V+E + ++ + + +++ + +G + GD+ +R+G+V
Sbjct: 95 PNERQVVVLRKEREVMEGTTRVKEYLARCKTHTVAHRSKVDGVGWWCGDYAVRIGRVENA 154
Query: 132 HSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPG-------HFMPMEPN 184
G+V EVEY P+ + + ++ E+ E E L + H E
Sbjct: 155 QG-TYAGLVCEVEYAPVRDVNVADALLAEYAEAIGECLRRAAGESAGAGALVHVNTGEC- 212
Query: 185 FIEYGLSD-HYSSQHTAVQY-ATVM 207
YGL + + H AV Y +TVM
Sbjct: 213 VGAYGLGNVAFGDAHAAVAYVSTVM 237
>gi|391326585|ref|XP_003737793.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Metaseiulus occidentalis]
Length = 225
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 23/166 (13%)
Query: 6 VLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFY--KPMLRDQSL--ASEFP 61
++H P G + + + +E I G ++G + Y M R Q + SE P
Sbjct: 5 IVHMVPCSGPEALQSTADNLCRMIERIGGQRDGVFCVDCETYFNTSMGRTQHVLHDSEHP 64
Query: 62 RDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQ----SYKMRVALNFEGFQYQ 117
F + + L AD+ ++M KL + KM + +G +YQ
Sbjct: 65 ASV-------------FSLLESGLCLVADANFDSLMNKLTPQLFTTKMGTKVECKGPRYQ 111
Query: 118 LGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLE 163
+ DF L+VG V T + RG+++E EY P ++M E +E
Sbjct: 112 VEDFVLKVGTV--TIGTSARGLLVECEYQPCPVTASCWELMRELME 155
>gi|170032200|ref|XP_001843970.1| trf-proximal protein [Culex quinquefasciatus]
gi|167872086|gb|EDS35469.1| trf-proximal protein [Culex quinquefasciatus]
Length = 217
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 71 ECPNKYFFVIRT--QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLRV 125
E P F ++ + ++I L D +M ++ + K + + +G +++ GDF +++
Sbjct: 64 EQPASVFSILDSGAKQIPLVTDGLFDLLMARISPVYTSKKQTKIESKGPRFEFGDFLIKL 123
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHF 178
G V T S+N +G+++EVEY P ++M EFL+ + + T+P +F
Sbjct: 124 GSV--TMSQNFKGVLVEVEYRPCLVAASCWELMREFLQGFLGSNVSNTIPAYF 174
>gi|348687542|gb|EGZ27356.1| hypothetical protein PHYSODRAFT_538929 [Phytophthora sojae]
Length = 196
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENL-RGIVMEVE 144
+LE I+++++ Y + FEG QY +GDF + V + + NL RG+++EV+
Sbjct: 70 LLECGLDGANILQQVEIYAFKSDGQFEGTQYVVGDFVVSVCTFMSRN--NLPRGLIIEVQ 127
Query: 145 YLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSD-HYSSQHTAVQY 203
Y P ++ +++EFL + R P MP F + GL + YS +HTA+QY
Sbjct: 128 YSPCYTVSHVDMLIDEFLSNFASHDHLRK-PVDNMPAL--FDKVGLPNTEYSLKHTALQY 184
Query: 204 ATV 206
Sbjct: 185 VAA 187
>gi|291244972|ref|XP_002742364.1| PREDICTED: Trf-proximal protein homolog [Saccoglossus kowalevskii]
Length = 210
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 31/213 (14%)
Query: 1 MTIKRVLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYK--PMLRDQSLA- 57
M + V W SV Q+++ +++ VE + K G + Y+ PM+ Q
Sbjct: 1 MGVTCVCQWPVPDNKSVQ-QVVDMIAKRVELLGSNKSGTFCVDCETYQSSPMMMLQKTVH 59
Query: 58 ----SEFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKM---RVALN 110
SE P +M E P + L AD+ IM++L+ + M +
Sbjct: 60 IIHNSEQPMTSYAVM--EGPG-------SAANCLVADTMFDQIMQRLKGFYMPKKTPKVE 110
Query: 111 FEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALS 170
+G Y+LGDF +++G V T + +GI++E+EY P + ++ EF++ + + +
Sbjct: 111 SKGQHYELGDFNVKIGTV--TLGGHAKGILLEIEYTPCVVVLDCWNLLTEFMQGFMASHT 168
Query: 171 KRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQY 203
P P+++ +Y+ T +QY
Sbjct: 169 ---------PSLPSYLANRQDANYTPMDTIMQY 192
>gi|156396612|ref|XP_001637487.1| predicted protein [Nematostella vectensis]
gi|156224599|gb|EDO45424.1| predicted protein [Nematostella vectensis]
Length = 187
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQS-YKMRVALNFE--GFQYQLGDFQLRVGKVVPTHSE 134
FV+ L A + ++M +L++ Y R A E G Y+ GDF L++G++ +
Sbjct: 54 FVVLESGTCLVAQTGFDSLMVRLKAFYTQRKAAKIEVKGPSYEYGDFILKIGQI--SLGP 111
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFL 162
+++G+++EVEYLP +E+ ++ EF+
Sbjct: 112 SVKGVLIEVEYLPCEDVEQCWGLISEFI 139
>gi|301094570|ref|XP_002896390.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109573|gb|EEY67625.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 196
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENL-RGIVMEVE 144
+LE I+++++ Y + FEG QY +GDF + V + + NL RG+++EV+
Sbjct: 70 LLECGLDGANILQQVEIYAFKSDGQFEGTQYVVGDFVVSVCTFMSRN--NLPRGLIIEVQ 127
Query: 145 YLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGL-SDHYSSQHTAVQY 203
Y P ++ +++EFL + S L M+ F + GL + YS +HTA+QY
Sbjct: 128 YSPCYTVSHVDMLIDEFLGNFA---SHEHLRKPVDNMQALFEKVGLPTSEYSLKHTALQY 184
Query: 204 ATV 206
Sbjct: 185 VAA 187
>gi|189237999|ref|XP_001812951.1| PREDICTED: similar to Mediator complex subunit 20 CG18780-PA
[Tribolium castaneum]
gi|270006649|gb|EFA03097.1| hypothetical protein TcasGA2_TC013006 [Tribolium castaneum]
Length = 206
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 7/98 (7%)
Query: 71 ECPNKYFFVIRT--QRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRV 125
E P F ++ T + I L D +M K+ + K + +G +Y++GDF +++
Sbjct: 64 EQPATVFSILETGQKTIPLATDGLFDLLMMKMSGFYSSKKQTKAESKGPRYEIGDFCVKL 123
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLE 163
G V T S+N RG+++EVEY P ++M EFL+
Sbjct: 124 GTV--TVSQNFRGVLVEVEYRPCVVPAMCWELMREFLQ 159
>gi|332373226|gb|AEE61754.1| unknown [Dendroctonus ponderosae]
Length = 211
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 82 TQRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRG 138
T+ I L D +M K+ S+ K + +G +Y++GDF +++G V + S N +G
Sbjct: 77 TKIIPLVTDGLFDLLMMKMSSFYQCKKQTKAESKGPRYEIGDFCVKLGSV--SVSSNFKG 134
Query: 139 IVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQH 198
I++EVEY P +M EF++ + + S T P P F++ + D YS
Sbjct: 135 ILVEVEYKPCVVPAMCWDLMMEFMQGFLGS-SIPTAP-------PPFVQNRMQDIYSPID 186
Query: 199 TAVQYATVMAQLIASVQSVQSMR 221
T QY S Q+ MR
Sbjct: 187 TIQQYLEHFTNFRKSQQTPMMMR 209
>gi|158294460|ref|XP_315616.4| AGAP005604-PA [Anopheles gambiae str. PEST]
gi|205830885|sp|Q7Q6Y4.6|MED20_ANOGA RecName: Full=Mediator of RNA polymerase II transcription subunit
20; AltName: Full=Mediator complex subunit 20
gi|157015575|gb|EAA11828.4| AGAP005604-PA [Anopheles gambiae str. PEST]
Length = 218
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 82 TQRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRG 138
T++I L D +M ++ + K + + +G +++ GDF +++G V T S+N +G
Sbjct: 76 TKQIPLVTDGLFDLLMTRIAPAYTSKKQTKIESKGQRFEFGDFVIKLGSV--TMSQNFKG 133
Query: 139 IVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHF 178
+++EVEY P ++M EFL+ + + ++P +F
Sbjct: 134 VLVEVEYRPCLVPGSCWELMREFLQGFLGSNVSNSMPAYF 173
>gi|345568983|gb|EGX51852.1| hypothetical protein AOL_s00043g586 [Arthrobotrys oligospora ATCC
24927]
Length = 219
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 73 PNKYFFVIRTQRIVLEADSTIQTIM-EKLQS-YKMRVALNFEGFQYQLGDFQLRVGKVVP 130
P K F ++ R ++ D + I+ KLQ + MR+ L EG +L DF++++ +
Sbjct: 84 PGKRFCLV--DRSIVTIDPDFEHILTAKLQGLWSMRLTLKAEGNILELEDFKIKIATL-- 139
Query: 131 THSENLRGIVMEVEYLPISSIEKSRQIMEEFLE 163
+ ++G++MEVEY+P + +E+ ++ +F+E
Sbjct: 140 SQGSVIKGVLMEVEYIPCAYLEQGEGVIRDFIE 172
>gi|260800037|ref|XP_002594943.1| hypothetical protein BRAFLDRAFT_286465 [Branchiostoma floridae]
gi|229280181|gb|EEN50954.1| hypothetical protein BRAFLDRAFT_286465 [Branchiostoma floridae]
Length = 204
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 12/129 (9%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSE 134
F I L ADS +M KL+ + + + +G +Y+ DF +++G V +
Sbjct: 71 FAIMDSGTCLVADSNFDQLMTKLKGFYAPRKGAKIEVKGPRYEYVDFIVKIGTVTTGPTA 130
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI++EVEY P ++ EF+ T G P P + Y
Sbjct: 131 SSRGILVEVEYTPCVVPNDCWSLLTEFM---------GTFMGDNKPAIPQVLASKQDGIY 181
Query: 195 SSQHTAVQY 203
S T +QY
Sbjct: 182 SPTDTILQY 190
>gi|298715510|emb|CBJ28080.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 182
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 86 VLEADSTIQTIMEKLQSYKM-RVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVE 144
VLE + ++ + ++ + R+ + EG Y+LGDF +RVGK RG+ +EVE
Sbjct: 62 VLEGEDPLEAMGAAARAGLVTRIKASIEGHAYRLGDFVVRVGKC--KKGAVFRGLALEVE 119
Query: 145 YLPISSIEKSRQIMEEFL-EIWQEALSKRTLPGHFMPMEP--NFIEYGLSDHYSSQHTAV 201
Y P + + ++E F+ I Q+ G F + + +G +S +H A+
Sbjct: 120 YRPCNRVADGLSMIEAFIPSIDQD--------GTFTAVSDLQDLAMFGRGPQFSVKHNAL 171
Query: 202 QYATVMAQLIA 212
Q + ++ A
Sbjct: 172 QITDLFNEVFA 182
>gi|242015746|ref|XP_002428508.1| mediator complex subunit, putative [Pediculus humanus corporis]
gi|212513142|gb|EEB15770.1| mediator complex subunit, putative [Pediculus humanus corporis]
Length = 206
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 82 TQRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRG 138
T+ + L AD +M K+ S K + +G +++LGDF +++G V T S++ +G
Sbjct: 78 TKTVSLVADGLFDLLMLKMTSIYTSKKQTKCESKGSRFELGDFCVKLGNV--TMSQSFKG 135
Query: 139 IVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQH 198
+++EVEY P ++++EFL+ + L P +++ ++D Y
Sbjct: 136 VLVEVEYRPCCIPANCWELLKEFLQGF--------LGSCVQSAPPAYLQARINDLYQPID 187
Query: 199 TAVQY 203
T QY
Sbjct: 188 TIHQY 192
>gi|241672383|ref|XP_002411478.1| decarboxylase, putative [Ixodes scapularis]
gi|215504132|gb|EEC13626.1| decarboxylase, putative [Ixodes scapularis]
Length = 212
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSE 134
F + + L AD T +M K+ S K + +G +Y++ DF ++VG V +
Sbjct: 75 FALLDTGLCLVADLTFDMLMLKMAGIYSPKKSTKMEAKGPRYEVADFLVKVGSV--SMGP 132
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI++EVEYLP +M EFL+ + G + P +++ +++ Y
Sbjct: 133 SFRGILVEVEYLPCVVPSSCWDLMREFLQGFM---------GTAVQGPPQYLQGRMNELY 183
Query: 195 SSQHTAVQY 203
+ T QY
Sbjct: 184 NPVDTVQQY 192
>gi|346466441|gb|AEO33065.1| hypothetical protein [Amblyomma maculatum]
Length = 234
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 14/129 (10%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSE 134
F + + L AD T +M K+ + K + +G +Y++ DF ++VG V +
Sbjct: 97 FALLDTGMCLVADITFDMLMLKMNGIYTSKKSTKIESKGPRYEIADFLVKVGSV--SMGP 154
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI++EVEYLP +M EFL+ + G + P +++ +++ Y
Sbjct: 155 SFRGILVEVEYLPCVVPSSCWDLMREFLQGFM---------GSAVQGPPQYLQGRMNELY 205
Query: 195 SSQHTAVQY 203
+ T QY
Sbjct: 206 NPVDTVQQY 214
>gi|156543437|ref|XP_001600958.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Nasonia vitripennis]
Length = 206
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 26/171 (15%)
Query: 6 VLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYK--PMLRDQSLA-----S 58
VLH P SQ ++ +++ + ++ V+ G++ Y P L Q S
Sbjct: 5 VLHQYPMTDNRTGSQTIDFLTKRIVALGAVQAGQFLVDCDTYMSVPQLGQQRTVHVLHNS 64
Query: 59 EFPRDFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQ 115
E P I+ E NK + L AD +M K+ + K + + +G +
Sbjct: 65 EQPASVFAIL--ESGNK--------MVPLIADGLFDLLMLKMTNIYTNKKQTKIECKGPR 114
Query: 116 YQLGDFQLRVGKVVPTHSENLRGIVMEVEY----LPISSIEKSRQIMEEFL 162
++LGDF +++G V ++N +G+++EVEY +P S E R+ ++ FL
Sbjct: 115 FELGDFCIKLGTV--NMTQNFKGVLVEVEYRPCVVPGSCFELIREFVQGFL 163
>gi|427781717|gb|JAA56310.1| Putative transcription mediator-related factor [Rhipicephalus
pulchellus]
Length = 210
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 14/129 (10%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSE 134
F + + L AD T +M K+ S K + G +Y++ DF ++VG V +
Sbjct: 71 FALLDTGMCLVADITFDMLMLKMAGIYSAKKSTKIESRGPRYEVADFLVKVGSV--SMGP 128
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI++EVEYLP +M EFL+ + G + P +++ +++ Y
Sbjct: 129 SFRGILVEVEYLPCVVPSSCWDLMREFLQGFM---------GSTVQGPPQYLQGRMNELY 179
Query: 195 SSQHTAVQY 203
+ T QY
Sbjct: 180 NPVDTVQQY 188
>gi|307209851|gb|EFN86630.1| Mediator of RNA polymerase II transcription subunit 20
[Harpegnathos saltator]
Length = 187
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 71/138 (51%), Gaps = 15/138 (10%)
Query: 71 ECPNKYFFVIRT-QRIV-LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRV 125
E P F ++ + +IV L AD +M K+ S K + + +G +++LGDF +++
Sbjct: 46 EQPASVFAILESGNKIVPLIADGLFDLLMLKMPSIYSSKKQTKIESKGPRFELGDFCVKL 105
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNF 185
G V T S+N +G+++EVEY P + +++ EFL+ + ++ + P +
Sbjct: 106 GSV--TMSQNFKGVLVEVEYRPCMVPASAWELIREFLQGFLGSVVSSQM--------PQY 155
Query: 186 IEYGLSDHYSSQHTAVQY 203
++ ++D Y T QY
Sbjct: 156 LQSRMNDIYQPLDTIHQY 173
>gi|405969414|gb|EKC34387.1| Mediator of RNA polymerase II transcription subunit 20 [Crassostrea
gigas]
Length = 217
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 22/143 (15%)
Query: 71 ECPNKYFFVIRTQRIVLEADSTIQTIMEKLQS--------YKMRVALNFE--GFQYQLGD 120
E P F V + +I++ +D + +M KL Y R E G +Y++GD
Sbjct: 69 EHPASCFSVTESGQILV-SDLLFEDLMSKLTMAKAGRESFYSQRKGFKIESRGQRYEVGD 127
Query: 121 FQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
F +++G V + + N RGI++EVEY P + + +M+E L+ ++ G+
Sbjct: 128 FIIKIGSV--SLASNFRGILIEVEYCPCVILNECWNMMKELLQ---------SMVGNSAE 176
Query: 181 MEPNFIEYGLSDHYSSQHTAVQY 203
P +++ Y+ T +QY
Sbjct: 177 TPPPVLKHKPDTVYTPSDTILQY 199
>gi|391343081|ref|XP_003745842.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Metaseiulus occidentalis]
Length = 225
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 23/165 (13%)
Query: 7 LHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYK--PMLRDQSL--ASEFPR 62
+H P G + + + +E + G ++G + Y+ M R Q + SE P
Sbjct: 6 VHMVPCSGPEALQSTADNLCRMIEKLGGRRDGVFCVDCETYQNVSMGRFQHVLHDSEHPA 65
Query: 63 DFLGIMVPECPNKYFFVIRTQRIVLEADSTIQTIMEKLQ----SYKMRVALNFEGFQYQL 118
F + + L AD+ ++M KL + K+ + +G +YQ+
Sbjct: 66 SV-------------FSLLESGLCLVADANFDSLMNKLNPQLFTTKIGTKVECKGPRYQV 112
Query: 119 GDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLE 163
DF L++G V T + RG+++E EY P + ++M E +E
Sbjct: 113 EDFILKIGTV--TIGTSARGLLVECEYQPCAVTASCWELMRELME 155
>gi|301606842|ref|XP_002933024.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20
[Xenopus (Silurana) tropicalis]
Length = 146
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSE 134
F + L AD + +M KL+ + N G +YQ DF +++G V T +
Sbjct: 11 FALFENGPCLVADLNLDVLMVKLKGFFQNAKANKMETRGTRYQYCDFLVKIGTV--TVGQ 68
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI +EV+Y P + +M EF++ + G P P Y
Sbjct: 69 SGRGITVEVDYCPCAVPGDCWNLMVEFMQSFM---------GSHAPSVPPVFSAKHDPLY 119
Query: 195 SSQHTAVQYATVMAQLIASVQSVQSMR 221
+ T VQY ++ ++ +V MR
Sbjct: 120 TPADTMVQYMELLNKIRKQQVTVAGMR 146
>gi|357608104|gb|EHJ65827.1| putative mediator complex subunit [Danaus plexippus]
Length = 157
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 71 ECPNKYFFVIR--TQRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRV 125
E P F ++ T+ I + AD +M KL + K + + +G +++LGDF +++
Sbjct: 14 EQPASVFSILESGTKNIHVIADGLFDLLMMKLSQHYTSKKQTKIESKGPKFELGDFCIKL 73
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLE 163
G V T ++N +GI++EVEY P ++ EFL+
Sbjct: 74 GSV--TMNQNFKGILIEVEYRPCVMANAVWGLLREFLQ 109
>gi|57530514|ref|NP_001006327.1| mediator of RNA polymerase II transcription subunit 20 [Gallus
gallus]
gi|82082346|sp|Q5ZKY9.1|MED20_CHICK RecName: Full=Mediator of RNA polymerase II transcription subunit
20; AltName: Full=Mediator complex subunit 20; AltName:
Full=TRF-proximal protein homolog
gi|53130550|emb|CAG31604.1| hypothetical protein RCJMB04_8k10 [Gallus gallus]
Length = 211
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ T+M KL+ + N G +YQ DF ++VG V T + RGI +E
Sbjct: 83 CLIADANFDTLMVKLKGFFQNAKANKIESRGTRYQYCDFLVKVGTV--TMGPSARGISVE 140
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EF++ + G P P+ YS T VQ
Sbjct: 141 VEYCPCVIANDCWNLLMEFMQ---------SFMGSHTPGIPSVFGTKHDSIYSPADTMVQ 191
Query: 203 Y 203
Y
Sbjct: 192 Y 192
>gi|194863017|ref|XP_001970235.1| GG23479 [Drosophila erecta]
gi|190662102|gb|EDV59294.1| GG23479 [Drosophila erecta]
Length = 252
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLR 124
ECP F +I +++ + AD+ +M K+ + K + + G +++ GDF ++
Sbjct: 68 ECPASTFSIIDNGTGKQVAIVADNIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIK 127
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
+G V T E+ +GI++E+EY + +++ E L+ + + P +F P
Sbjct: 128 LGSV--TMMEHFKGILIEIEYKSCVILAYCWEMIREVLQGFLGIAVGKDFPSYFAP 181
>gi|160774152|gb|AAI55507.1| LOC100127863 protein [Xenopus (Silurana) tropicalis]
Length = 205
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSE 134
F + L AD + +M KL+ + N G +YQ DF +++G V T +
Sbjct: 70 FALFENGPCLVADLNLDVLMVKLKGFFQNAKANKMETRGTRYQYCDFLVKIGTV--TVGQ 127
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI +EV+Y P + +M EF++ + G P P Y
Sbjct: 128 SGRGITVEVDYCPCAVPGDCWNLMVEFMQSFM---------GSHAPSVPPVFSAKHDPLY 178
Query: 195 SSQHTAVQYATVMAQLIASVQSVQSMR 221
+ T VQY ++ ++ +V MR
Sbjct: 179 TPADTMVQYMELLNKIRKQQVTVAGMR 205
>gi|148233699|ref|NP_001084734.1| mediator of RNA polymerase II transcription subunit 20 [Xenopus
laevis]
gi|82185442|sp|Q6NTV8.1|MED20_XENLA RecName: Full=Mediator of RNA polymerase II transcription subunit
20; AltName: Full=Mediator complex subunit 20; AltName:
Full=TRF-proximal protein homolog
gi|46329737|gb|AAH68846.1| MGC81505 protein [Xenopus laevis]
Length = 211
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSE 134
F + L AD + +M KL+ + N G +YQ DF +++G V T +
Sbjct: 76 FALFENGPCLVADLNLDVLMVKLKGFFQNAKANKMETRGTRYQYCDFLVKIGTV--TVGQ 133
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI +EV+Y P + +M EF++ + G P P Y
Sbjct: 134 SGRGITVEVDYCPCAVPGDCWNLMMEFMQSFM---------GSHAPSVPPVFSAKHDPLY 184
Query: 195 SSQHTAVQYATVMAQLIASVQSVQSMR 221
+ T VQY ++ ++ +V MR
Sbjct: 185 TPADTMVQYMELLNKIRKQQVTVAGMR 211
>gi|449490623|ref|XP_004177142.1| PREDICTED: LOW QUALITY PROTEIN: mediator of RNA polymerase II
transcription subunit 20 [Taeniopygia guttata]
Length = 251
Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSE 134
F + L AD+ T+M KL+ + N G +YQ DF +++G V T
Sbjct: 115 FALFENGPCLVADANFDTLMVKLKGFFQNAKANKIESRGTRYQYCDFLVKLGTV--TMGP 172
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI +EVEY P ++ EF++ + G P P+ Y
Sbjct: 173 SARGISVEVEYAPCVIANDCWXLLMEFMQSFM---------GSHTPGIPSVFGSKHDSTY 223
Query: 195 SSQHTAVQY 203
S T VQY
Sbjct: 224 SPGDTMVQY 232
>gi|195393396|ref|XP_002055340.1| GJ18844 [Drosophila virilis]
gi|194149850|gb|EDW65541.1| GJ18844 [Drosophila virilis]
Length = 246
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ L ADS +M K+ S K + + G +++ GDF ++
Sbjct: 66 EYPASTFSIIDNGTGKQVALVADSIFDLLMLKMTSTFTSKKQTKIESRGARFEYGDFVIK 125
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSI----EKSRQIMEEFLEI 164
+G V T E+ +GI++E+EY P ++ E R++++ FL I
Sbjct: 126 LGSV--TMMEHFKGILIEIEYRPCITLSYCWEMIREMLQGFLGI 167
>gi|410919597|ref|XP_003973270.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Takifugu rubripes]
Length = 211
Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVA---LNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L+AD+ +M KL+S+ + G +Y+ DF ++VG V T S + RGI +E
Sbjct: 81 CLKADTNFDILMVKLKSHFQNAKGYKVECRGSRYRYCDFLIKVGTV--TMSSSARGISVE 138
Query: 143 VEYLPISSIEKSRQIMEEFLE 163
VEY P +M+EF++
Sbjct: 139 VEYCPCVVPGDCWNLMKEFMQ 159
>gi|307191149|gb|EFN74847.1| Mediator of RNA polymerase II transcription subunit 20 [Camponotus
floridanus]
Length = 114
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 97 MEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQ 156
M + + K + + +G ++++GDF +++G V T S+N +GI++EVEY P S +
Sbjct: 4 MTNIYTSKKQTKIESKGPRFEIGDFCVKLGSV--TMSQNFKGILVEVEYRPCVVPAGSWE 61
Query: 157 IMEEFLE 163
+M EFL+
Sbjct: 62 LMREFLQ 68
>gi|196004024|ref|XP_002111879.1| hypothetical protein TRIADDRAFT_55346 [Trichoplax adhaerens]
gi|190585778|gb|EDV25846.1| hypothetical protein TRIADDRAFT_55346 [Trichoplax adhaerens]
Length = 204
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 98 EKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQI 157
+ +++Y +R +L G LGDF +++ +V H+ +L IV+E Y P S + +
Sbjct: 92 DNIKNYTLRKSLKAHGQTLLLGDFIVKLSSIVGGHT-SLTDIVIEANYKPCSHVGVCWNL 150
Query: 158 MEEFLEIWQEALSKRTLPGHFMPMEP--NFIEYGLSDHYSSQHTAVQYATV 206
+ EF +I E+ +P P N + G D TA QYA +
Sbjct: 151 LHEFCKILTESYELS------LPETPPLNILGDGTFD---KSQTATQYADI 192
>gi|340713980|ref|XP_003395511.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like isoform 2 [Bombus terrestris]
Length = 208
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 20/204 (9%)
Query: 6 VLHWQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPRDFL 65
VL P Q + +++ V ++ V+ G++ Y + L +P L
Sbjct: 5 VLQQYPMTENKTGPQTIEFLTKRVVALGAVQTGQFLVDCETY---VSVPQLGESWPGRTL 61
Query: 66 GIM-VPECPNKYFFVIRTQRIV--LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLG 119
++ E P F ++ + V L AD +M K+ S KM+ + +G ++++G
Sbjct: 62 HVLHNSEQPASAFAILESGNKVVPLIADGLFDLLMYKMSSVYTNKMQ-KMESKGPRFEIG 120
Query: 120 DFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFM 179
DF +++G V T ++N +G+++EVEY P + ++M EFL+ + L
Sbjct: 121 DFCVKLGSV--TINQNFKGVLVEVEYRPCVVPGSAWELMREFLQGF--------LGSTVS 170
Query: 180 PMEPNFIEYGLSDHYSSQHTAVQY 203
P +++ ++D Y T QY
Sbjct: 171 NQAPQYLQNRMNDIYQPLDTIQQY 194
>gi|195043823|ref|XP_001991697.1| GH12797 [Drosophila grimshawi]
gi|193901455|gb|EDW00322.1| GH12797 [Drosophila grimshawi]
Length = 250
Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ L AD+ +M K+ S K + + G +++ GDF ++
Sbjct: 66 EFPASTFSIIDNGTGKQVALVADAIFDLLMLKMTSTFTSKKQTKIESRGARFEYGDFVIK 125
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSI----EKSRQIMEEFLEI 164
+G V T E+ +GI++E+EY P ++ E R++++ FL I
Sbjct: 126 LGSV--TMMEHFKGILIEIEYRPCITLSYCWEMIREMLQGFLGI 167
>gi|432856726|ref|XP_004068507.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Oryzias latipes]
Length = 211
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 87 LEADSTIQTIMEKLQSYKMRVA---LNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEV 143
L AD+ +M KL+S+ + G +Y+ DF ++VG V T S + RGI +EV
Sbjct: 82 LVADANFDVLMSKLKSHFQNAKGHKVESRGSRYRYCDFLIKVGTV--TMSSSARGISVEV 139
Query: 144 EYLPISSIEKSRQIMEEFLE 163
EY P +M+EF++
Sbjct: 140 EYCPCVVPGDCWNLMKEFMQ 159
>gi|47229641|emb|CAG06837.1| unnamed protein product [Tetraodon nigroviridis]
Length = 211
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVA---LNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L+AD+ +M KL+S+ + G +Y+ DF ++VG V T + + RGI +E
Sbjct: 81 CLKADTNFDILMVKLKSHFQNAKGHKVECRGSRYRYCDFLIKVGTV--TMNSSARGISVE 138
Query: 143 VEYLPISSIEKSRQIMEEFLE 163
VEY P +M+EF++
Sbjct: 139 VEYCPCVVPGDCWNLMKEFMQ 159
>gi|340713978|ref|XP_003395510.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like isoform 1 [Bombus terrestris]
Length = 205
Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 71 ECPNKYFFVIRTQRIV--LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRV 125
E P F ++ + V L AD +M K+ S KM+ + +G ++++GDF +++
Sbjct: 65 EQPASAFAILESGNKVVPLIADGLFDLLMYKMSSVYTNKMQ-KMESKGPRFEIGDFCVKL 123
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNF 185
G V T ++N +G+++EVEY P + ++M EFL+ + L P +
Sbjct: 124 GSV--TINQNFKGVLVEVEYRPCVVPGSAWELMREFLQGF--------LGSTVSNQAPQY 173
Query: 186 IEYGLSDHYSSQHTAVQY 203
++ ++D Y T QY
Sbjct: 174 LQNRMNDIYQPLDTIQQY 191
>gi|327271199|ref|XP_003220375.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Anolis carolinensis]
Length = 212
Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + N G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADANFDVLMVKLKGFFQNAKGNKIESRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EF++ + G P P+ YS T VQ
Sbjct: 142 VEYCPCVVANDCWNLLMEFMQ---------SFMGSHAPGIPSVFGNKHDSIYSPGDTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|213512725|ref|NP_001134355.1| mediator of RNA polymerase II transcription subunit 20 [Salmo
salar]
gi|209732646|gb|ACI67192.1| Mediator of RNA polymerase II transcription subunit 20 [Salmo
salar]
Length = 211
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVA---LNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD +M KL+S+ + G +Y+ DF ++VG V T S + RGI +E
Sbjct: 81 CLTADGNFDVLMIKLKSHFQNAKGHKVESRGSRYRYCDFLIKVGAV--TMSSSARGISVE 138
Query: 143 VEYLPISSIEKSRQIMEEFLE 163
VEY P +M+EF++
Sbjct: 139 VEYCPCVVPGDCWNLMKEFMQ 159
>gi|340713982|ref|XP_003395512.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like isoform 3 [Bombus terrestris]
Length = 208
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 71 ECPNKYFFVIRTQRIV--LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRV 125
E P F ++ + V L AD +M K+ S KM+ + +G ++++GDF +++
Sbjct: 68 EQPASAFAILESGNKVVPLIADGLFDLLMYKMSSVYTNKMQ-KMESKGPRFEIGDFCVKL 126
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNF 185
G V T ++N +G+++EVEY P + ++M EFL+ + L P +
Sbjct: 127 GSV--TINQNFKGVLVEVEYRPCVVPGSAWELMREFLQGF--------LGSTVSNQAPQY 176
Query: 186 IEYGLSDHYSSQHTAVQY 203
++ ++D Y T QY
Sbjct: 177 LQNRMNDIYQPLDTIQQY 194
>gi|383849433|ref|XP_003700349.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like isoform 1 [Megachile rotundata]
Length = 205
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 71 ECPNKYFFVIRTQRIV--LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRV 125
E P F ++ + V L AD +M K+ S KM+ + +G ++++GDF +++
Sbjct: 65 EQPASVFAILESGNKVVPLIADGLFDLLMYKISSIYTNKMQ-KVESKGPRFEIGDFCVKL 123
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNF 185
G V T ++N +G+++EVEY P + ++M EFL+ + L P +
Sbjct: 124 GSV--TINQNFKGVLVEVEYRPCVVPGSAWELMREFLQGF--------LGSTVSNQAPQY 173
Query: 186 IEYGLSDHYSSQHTAVQY 203
++ ++D Y T QY
Sbjct: 174 LQNRMNDIYQPLDTIQQY 191
>gi|348507885|ref|XP_003441486.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Oreochromis niloticus]
Length = 211
Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVA---LNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+S+ + G +Y+ DF ++VG V T S + RGI +E
Sbjct: 81 CLIADANFDVLMVKLKSHFQNAKGHKVESRGSRYRYCDFLIKVGTV--TMSSSARGISVE 138
Query: 143 VEYLPISSIEKSRQIMEEFLE 163
VEY P +M+EF++
Sbjct: 139 VEYCPCVVPGDCWNLMKEFMQ 159
>gi|332016297|gb|EGI57210.1| Trans-2,3-enoyl-CoA reductase [Acromyrmex echinatior]
Length = 394
Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 97 MEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQ 156
M + + K + + +G ++++GDF +++G V T S+N +G+++EVEY P + +
Sbjct: 4 MTTIYTSKKQTKIESKGPRFEIGDFCVKLGSV--TMSQNFKGVLVEVEYRPCVVPASAWE 61
Query: 157 IMEEFLE 163
++ EFL+
Sbjct: 62 LIREFLQ 68
>gi|350421215|ref|XP_003492772.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Bombus impatiens]
Length = 164
Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 71 ECPNKYFFVIRTQRIV--LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRV 125
E P F ++ + V L AD +M K+ S KM+ + +G ++++GDF +++
Sbjct: 24 EQPASAFAILESGNKVVPLIADGLFDLLMYKMSSVYTNKMQ-KMESKGPRFEIGDFCVKL 82
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNF 185
G V T ++N +G+++EVEY P + ++M EFL+ + L P +
Sbjct: 83 GSV--TINQNFKGVLVEVEYRPCVVPGSAWELMREFLQGF--------LGSTVSNQAPQY 132
Query: 186 IEYGLSDHYSSQHTAVQY 203
++ ++D Y T QY
Sbjct: 133 LQNRMNDIYQPLDTIQQY 150
>gi|195132099|ref|XP_002010481.1| GI15952 [Drosophila mojavensis]
gi|193908931|gb|EDW07798.1| GI15952 [Drosophila mojavensis]
Length = 246
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 12/104 (11%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ + AD+ +M K+ S K + + G +++ GDF ++
Sbjct: 66 EYPASTFSIIDNGTGKQVAIVADNIFDLLMLKMTSIFTSKKQTKIESRGARFEYGDFVIK 125
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSI----EKSRQIMEEFLEI 164
+G V T E+ +GI++E+EY P ++ E R++++ FL I
Sbjct: 126 LGSV--TMMEHFKGILIEIEYRPCITLSYCWEMIREMLQGFLGI 167
>gi|383849435|ref|XP_003700350.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like isoform 2 [Megachile rotundata]
Length = 208
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 71 ECPNKYFFVIRTQRIV--LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRV 125
E P F ++ + V L AD +M K+ S KM+ + +G ++++GDF +++
Sbjct: 68 EQPASVFAILESGNKVVPLIADGLFDLLMYKISSIYTNKMQ-KVESKGPRFEIGDFCVKL 126
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNF 185
G V T ++N +G+++EVEY P + ++M EFL+ + L P +
Sbjct: 127 GSV--TINQNFKGVLVEVEYRPCVVPGSAWELMREFLQGF--------LGSTVSNQAPQY 176
Query: 186 IEYGLSDHYSSQHTAVQY 203
++ ++D Y T QY
Sbjct: 177 LQNRMNDIYQPLDTIQQY 194
>gi|440911226|gb|ELR60926.1| Mediator of RNA polymerase II transcription subunit 20, partial
[Bos grunniens mutus]
Length = 207
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 79 CLVADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 136
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P YS T VQ
Sbjct: 137 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRTEPVYSPADTMVQ 187
Query: 203 Y 203
Y
Sbjct: 188 Y 188
>gi|348576280|ref|XP_003473915.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Cavia porcellus]
Length = 212
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLTADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPAAPAVFGNKHDAVYGPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|449271600|gb|EMC81884.1| Mediator of RNA polymerase II transcription subunit 20, partial
[Columba livia]
Length = 162
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSE 134
F + L AD+ +M KL+ + N G +YQ DF ++VG V T
Sbjct: 26 FALFENGPCLIADANFDILMVKLKGFFQNAKANKIESRGTRYQYCDFLVKVGTV--TMGP 83
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI +EVEY P ++ EF++ + G P P+ Y
Sbjct: 84 SARGISVEVEYGPCVIANDCWNLLMEFMQ---------SFMGSHAPGVPSVFGTKHDSVY 134
Query: 195 SSQHTAVQY 203
T VQY
Sbjct: 135 GPADTMVQY 143
>gi|157074102|ref|NP_001096763.1| mediator of RNA polymerase II transcription subunit 20 [Bos taurus]
gi|426250277|ref|XP_004018864.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20
[Ovis aries]
gi|148877305|gb|AAI46259.1| MED20 protein [Bos taurus]
gi|296474440|tpg|DAA16555.1| TPA: mediator complex subunit 20 [Bos taurus]
Length = 212
Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLVADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P YS T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYSPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|431838378|gb|ELK00310.1| Mediator of RNA polymerase II transcription subunit 20 [Pteropus
alecto]
Length = 275
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 14/129 (10%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSE 134
F + L AD+ +M KL+ + + G +YQ DF ++VG V T
Sbjct: 139 FALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGP 196
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI +EVEY P ++ EFL+ + G P P Y
Sbjct: 197 SARGISVEVEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVY 247
Query: 195 SSQHTAVQY 203
T VQY
Sbjct: 248 GPADTMVQY 256
>gi|328781671|ref|XP_001121318.2| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like isoform 1 [Apis mellifera]
Length = 205
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 16/138 (11%)
Query: 71 ECPNKYFFVIRTQRIV--LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRV 125
E P F ++ + V L AD +M K+ S KM+ + +G ++++GDF +++
Sbjct: 65 EQPASAFAILESGNKVVPLIADGLFDLLMYKISSVYTNKMQ-KMESKGPRFEIGDFCVKL 123
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNF 185
G V T ++N +G+++EVEY P + +++ EFL+ + L P +
Sbjct: 124 GSV--TINQNFKGVLVEVEYRPCVVPGSAWELIREFLQGF--------LGSTVSNQAPQY 173
Query: 186 IEYGLSDHYSSQHTAVQY 203
++ ++D Y T QY
Sbjct: 174 LQNRMNDIYQPLDTIQQY 191
>gi|395534137|ref|XP_003769104.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20
[Sarcophilus harrisii]
Length = 212
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSE 134
F + L AD+ +M KL+ + N G +YQ DF ++VG V T
Sbjct: 76 FALFENGPCLIADANFDVLMVKLKGFFQNAKANKIETRGTRYQYCDFLVKVGTV--TMGP 133
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLE 163
+ RGI +EVEY P ++ EFL+
Sbjct: 134 SARGISVEVEYGPCVVASDCWNLLLEFLQ 162
>gi|380025054|ref|XP_003696296.1| PREDICTED: LOW QUALITY PROTEIN: trans-2,3-enoyl-CoA reductase-like
[Apis florea]
Length = 485
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 71 ECPNKYFFVIRTQRIV--LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRV 125
E P F ++ + V L AD +M K+ S KM+ + +G ++++GDF +++
Sbjct: 65 EQPASAFAILESGNKVVPLIADGLFDLLMYKISSVYTNKMQ-KMESKGPRFEIGDFCVKL 123
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLE 163
G V T ++N +G+++EVEY P + +++ EFL+
Sbjct: 124 GSV--TINQNFKGVLVEVEYRPCVVPGSAWELIREFLQ 159
>gi|321461210|gb|EFX72244.1| hypothetical protein DAPPUDRAFT_59294 [Daphnia pulex]
Length = 218
Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 83 QRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGI 139
+ + L AD+ +M KL ++ K + + G +++ GDF +++G V T +GI
Sbjct: 83 KTVALVADNLFDLLMLKLSNFYTAKKQTKIESRGPRFEAGDFLVKLGSV--TMGPAFKGI 140
Query: 140 VMEVEY----LPISSIEKSRQIMEEFL 162
++EVEY LP + + R+ M+ FL
Sbjct: 141 LVEVEYQACSLPAACWDLIREFMQGFL 167
>gi|351707915|gb|EHB10834.1| Mediator of RNA polymerase II transcription subunit 20
[Heterocephalus glaber]
Length = 204
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 76 CLTADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 133
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 134 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPTVFGNRHDAVYGPADTMVQ 184
Query: 203 Y 203
Y
Sbjct: 185 Y 185
>gi|329744613|ref|NP_001193281.1| mediator of RNA polymerase II transcription subunit 20 [Sus scrofa]
Length = 212
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P YS T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYSPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|328781673|ref|XP_003250014.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like isoform 2 [Apis mellifera]
Length = 208
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 71 ECPNKYFFVIRTQRIV--LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRV 125
E P F ++ + V L AD +M K+ S KM+ + +G ++++GDF +++
Sbjct: 68 EQPASAFAILESGNKVVPLIADGLFDLLMYKISSVYTNKMQ-KMESKGPRFEIGDFCVKL 126
Query: 126 GKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLE 163
G V T ++N +G+++EVEY P + +++ EFL+
Sbjct: 127 GSV--TINQNFKGVLVEVEYRPCVVPGSAWELIREFLQ 162
>gi|426353135|ref|XP_004044054.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20
[Gorilla gorilla gorilla]
Length = 305
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 177 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 234
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 235 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTMVQ 285
Query: 203 Y 203
Y
Sbjct: 286 Y 286
>gi|1834425|emb|CAA71871.1| Trf-proximal protein [Drosophila melanogaster]
Length = 252
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ + AD+ +M K+ + K + + G +++ GDF ++
Sbjct: 68 EYPASTFSIIDNGTGKQVAIVADNIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIK 127
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
+G V T E+ +GI++E+EY + +++ E L+ + + P +F P
Sbjct: 128 LGSV--TMMEHFKGILIEIEYKSCVILAYCWEMIREMLQGFLGIAVNKDFPSYFAP 181
>gi|24582677|ref|NP_524663.2| mediator complex subunit 20, isoform A [Drosophila melanogaster]
gi|29428177|sp|P91641.2|MED20_DROME RecName: Full=Mediator of RNA polymerase II transcription subunit
20; AltName: Full=Mediator complex subunit 20; AltName:
Full=Protein trf-proximal; AltName: Full=dMED20;
AltName: Full=dTrap26; AltName: Full=dTrfp
gi|22945933|gb|AAF52599.2| mediator complex subunit 20, isoform A [Drosophila melanogaster]
gi|28316908|gb|AAO39476.1| RE63851p [Drosophila melanogaster]
gi|220948720|gb|ACL86903.1| MED20-PA [synthetic construct]
gi|220958088|gb|ACL91587.1| MED20-PA [synthetic construct]
Length = 252
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ + AD+ +M K+ + K + + G +++ GDF ++
Sbjct: 68 EYPASTFSIIDNGTGKQVAIVADNIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIK 127
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
+G V T E+ +GI++E+EY + +++ E L+ + + P +F P
Sbjct: 128 LGSV--TMMEHFKGILIEIEYKSCVILAYCWEMIREMLQGFLGIAVNKDFPSYFAP 181
>gi|126309859|ref|XP_001370564.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Monodelphis domestica]
Length = 212
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSE 134
F + L AD+ +M KL+ + N G +YQ DF ++VG V T
Sbjct: 76 FALFENGPCLIADANFDVLMVKLKGFFQNAKANKIETRGTRYQYCDFLVKVGTV--TMGP 133
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLE 163
+ RGI +EVEY P ++ EFL+
Sbjct: 134 SARGISVEVEYGPCVVASDCWNLVLEFLQ 162
>gi|281183222|ref|NP_001162222.1| mediator of RNA polymerase II transcription subunit 20 [Papio
anubis]
gi|157939801|gb|ABW05540.1| mediator complex subunit 20 (predicted) [Papio anubis]
Length = 204
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 76 CLTADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 133
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 134 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTMVQ 184
Query: 203 Y 203
Y
Sbjct: 185 Y 185
>gi|442626696|ref|NP_001260223.1| mediator complex subunit 20, isoform B [Drosophila melanogaster]
gi|440213531|gb|AGB92759.1| mediator complex subunit 20, isoform B [Drosophila melanogaster]
Length = 268
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ + AD+ +M K+ + K + + G +++ GDF ++
Sbjct: 68 EYPASTFSIIDNGTGKQVAIVADNIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIK 127
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
+G V T E+ +GI++E+EY + +++ E L+ + + P +F P
Sbjct: 128 LGSV--TMMEHFKGILIEIEYKSCVILAYCWEMIREMLQGFLGIAVNKDFPSYFAP 181
>gi|417397199|gb|JAA45633.1| Putative mediator of rna polymerase ii transcription subunit
20-like isoform 1 [Desmodus rotundus]
Length = 212
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPTVFGNRHDTVYGPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|299744705|ref|XP_001831221.2| hypothetical protein CC1G_00768 [Coprinopsis cinerea okayama7#130]
gi|298406250|gb|EAU90384.2| hypothetical protein CC1G_00768 [Coprinopsis cinerea okayama7#130]
Length = 302
Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLG-DFQLRVGKVVPTHSENLRGIVMEVE 144
V +A +T T + LN EG +Q+G D+ +RVG V + E +RG+++EVE
Sbjct: 126 VRQAATTRNTSASATNALYTASELNIEGKVFQVGSDWLVRVGMV--KNKETMRGMLLEVE 183
Query: 145 YLPISSIEKSRQ 156
YLP+ ++ Q
Sbjct: 184 YLPMPYMDPDAQ 195
>gi|61557196|ref|NP_001013196.1| mediator of RNA polymerase II transcription subunit 20 [Rattus
norvegicus]
gi|81883761|sp|Q5XIE9.1|MED20_RAT RecName: Full=Mediator of RNA polymerase II transcription subunit
20; AltName: Full=Mediator complex subunit 20; AltName:
Full=TRF-proximal protein homolog
gi|53734254|gb|AAH83734.1| Mediator complex subunit 20 [Rattus norvegicus]
gi|149069450|gb|EDM18891.1| rCG43485, isoform CRA_b [Rattus norvegicus]
Length = 212
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPTVFGNRHDAVYGPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|403261267|ref|XP_003923046.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20
[Saimiri boliviensis boliviensis]
Length = 273
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 145 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 202
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 203 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDVVYGPADTMVQ 253
Query: 203 Y 203
Y
Sbjct: 254 Y 254
>gi|119624473|gb|EAX04068.1| Trf (TATA binding protein-related factor)-proximal homolog
(Drosophila), isoform CRA_b [Homo sapiens]
gi|193783550|dbj|BAG53461.1| unnamed protein product [Homo sapiens]
gi|194373925|dbj|BAG62275.1| unnamed protein product [Homo sapiens]
Length = 150
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 14/129 (10%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSE 134
F + L AD+ +M KL+ + + G +YQ DF ++VG V T
Sbjct: 14 FALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGP 71
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI +EVEY P ++ EFL+ + G P P Y
Sbjct: 72 SARGISVEVEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVY 122
Query: 195 SSQHTAVQY 203
T VQY
Sbjct: 123 GPADTMVQY 131
>gi|301757412|ref|XP_002914535.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Ailuropoda melanoleuca]
Length = 212
Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 87 LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEV 143
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +EV
Sbjct: 85 LIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVEV 142
Query: 144 EYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQY 203
EY P ++ EFL+ + G P P+ Y T +QY
Sbjct: 143 EYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPSVFGNRHDAVYGPADTMIQY 193
>gi|281345746|gb|EFB21330.1| hypothetical protein PANDA_002455 [Ailuropoda melanoleuca]
Length = 207
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 87 LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEV 143
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +EV
Sbjct: 80 LIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVEV 137
Query: 144 EYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQY 203
EY P ++ EFL+ + G P P+ Y T +QY
Sbjct: 138 EYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPSVFGNRHDAVYGPADTMIQY 188
>gi|344263763|ref|XP_003403965.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Loxodonta africana]
Length = 212
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGTSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ G P P Y T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------NFLGSHTPGAPTVFGNRHDAVYGPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|75075800|sp|Q4R4S8.1|MED20_MACFA RecName: Full=Mediator of RNA polymerase II transcription subunit
20; AltName: Full=Mediator complex subunit 20; AltName:
Full=TRF-proximal protein homolog
gi|67971110|dbj|BAE01897.1| unnamed protein product [Macaca fascicularis]
Length = 212
Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|30023851|ref|NP_004266.2| mediator of RNA polymerase II transcription subunit 20 [Homo
sapiens]
gi|350536321|ref|NP_001233419.1| mediator of RNA polymerase II transcription subunit 20 [Pan
troglodytes]
gi|297678109|ref|XP_002816923.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20
isoform 1 [Pongo abelii]
gi|332234265|ref|XP_003266331.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20
[Nomascus leucogenys]
gi|397526903|ref|XP_003833354.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20
[Pan paniscus]
gi|29428258|sp|Q9H944.1|MED20_HUMAN RecName: Full=Mediator of RNA polymerase II transcription subunit
20; AltName: Full=Mediator complex subunit 20; AltName:
Full=TRF-proximal protein homolog; Short=hTRFP
gi|10434852|dbj|BAB14399.1| unnamed protein product [Homo sapiens]
gi|18044732|gb|AAH19866.1| Mediator complex subunit 20 [Homo sapiens]
gi|26454864|gb|AAH40950.1| Mediator complex subunit 20 [Homo sapiens]
gi|45708414|gb|AAH12618.1| Mediator complex subunit 20 [Homo sapiens]
gi|45710110|gb|AAH32552.1| Mediator complex subunit 20 [Homo sapiens]
gi|119624472|gb|EAX04067.1| Trf (TATA binding protein-related factor)-proximal homolog
(Drosophila), isoform CRA_a [Homo sapiens]
gi|167774051|gb|ABZ92460.1| mediator complex subunit 20 [synthetic construct]
gi|208966722|dbj|BAG73375.1| mediator complex subunit 20 [synthetic construct]
gi|343959372|dbj|BAK63543.1| TRF-proximal protein homolog [Pan troglodytes]
gi|380783581|gb|AFE63666.1| mediator of RNA polymerase II transcription subunit 20 [Macaca
mulatta]
gi|383414063|gb|AFH30245.1| mediator of RNA polymerase II transcription subunit 20 [Macaca
mulatta]
gi|384950458|gb|AFI38834.1| mediator of RNA polymerase II transcription subunit 20 [Macaca
mulatta]
gi|410246960|gb|JAA11447.1| mediator complex subunit 20 [Pan troglodytes]
gi|410287990|gb|JAA22595.1| mediator complex subunit 20 [Pan troglodytes]
gi|410329249|gb|JAA33571.1| mediator complex subunit 20 [Pan troglodytes]
Length = 212
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|345778757|ref|XP_538917.3| PREDICTED: mediator of RNA polymerase II transcription subunit 20
[Canis lupus familiaris]
Length = 212
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|318054185|ref|NP_001187442.1| mediator of RNA polymerase II transcription subunit 20 [Ictalurus
punctatus]
gi|308323017|gb|ADO28646.1| mediator of RNA polymerase II transcription subunit 20 [Ictalurus
punctatus]
Length = 212
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Query: 87 LEADSTIQTIMEKLQSYKMRVA---LNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEV 143
L AD+ +M KL+S+ + G +Y+ DF ++VG V T S + RGI +EV
Sbjct: 82 LAADANFDVLMVKLKSHFQNAKGHKVESRGARYRYADFLIKVGTV--TMSSSARGISVEV 139
Query: 144 EYLPISSIEKSRQIMEEFLE 163
EY +M+EF++
Sbjct: 140 EYSACVVPGDCWNLMKEFMQ 159
>gi|226372056|gb|ACO51653.1| Mediator of RNA polymerase II transcription subunit 20 [Rana
catesbeiana]
Length = 213
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 15/148 (10%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSE 134
F + L AD +M KL+ + N G +YQ DF +++G V T +
Sbjct: 76 FALFENGPCLVADQNFDVLMIKLKGFFQNAKANKMETRGTRYQYCDFLVKIGTV--TMGQ 133
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHY 194
+ RGI +EV+ P + +M EF++++ G P P Y
Sbjct: 134 SGRGISVEVDCCPCAVPGDCWNLMMEFMQMFM---------GSHAPSGPPVFSAKHDALY 184
Query: 195 SSQHTAVQYATVMAQLIASVQ-SVQSMR 221
+ T +QY ++ ++ Q +V MR
Sbjct: 185 TPGDTMMQYMELLNKIRKQQQGTVAGMR 212
>gi|195472901|ref|XP_002088736.1| GE11200 [Drosophila yakuba]
gi|194174837|gb|EDW88448.1| GE11200 [Drosophila yakuba]
Length = 252
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ + AD+ +M K+ + K + + G +++ GDF ++
Sbjct: 68 EYPASTFSIIDNGTGKQVAIVADNIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIK 127
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
+G V T E+ +GI++E+EY + +++ E L+ + + P +F P
Sbjct: 128 LGSV--TMMEHFKGILIEIEYKSCVILAYCWEMIREVLQGFLGIAVGKDFPTYFAP 181
>gi|395832343|ref|XP_003789231.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20
[Otolemur garnettii]
Length = 212
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAIYGPADTMVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|9910590|ref|NP_064432.1| mediator of RNA polymerase II transcription subunit 20 [Mus
musculus]
gi|29428269|sp|Q9R0X0.1|MED20_MOUSE RecName: Full=Mediator of RNA polymerase II transcription subunit
20; AltName: Full=Mediator complex subunit 20; AltName:
Full=TRF-proximal protein homolog
gi|5777876|emb|CAB53514.1| Trf-proximal protein [Mus musculus]
gi|26335671|dbj|BAC31536.1| unnamed protein product [Mus musculus]
gi|74226909|dbj|BAE27098.1| unnamed protein product [Mus musculus]
gi|148691629|gb|EDL23576.1| Trf (TATA binding protein-related factor)-proximal protein homolog
(Drosophila), isoform CRA_b [Mus musculus]
Length = 212
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T +Q
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHAPGAPTVFGNRHDAVYGPADTMIQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|195577452|ref|XP_002078584.1| GD22443 [Drosophila simulans]
gi|194190593|gb|EDX04169.1| GD22443 [Drosophila simulans]
Length = 252
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ + AD+ +M K+ + K + + G +++ GDF ++
Sbjct: 68 EYPASTFSIIDNGTGKQVAIVADNIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIK 127
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
+G V T ++ +GI++E+EY + +++ E L+ + + P +F P
Sbjct: 128 LGSV--TMMDHFKGILIEIEYKSCVILAYCWEMIREMLQGFLGIAVNKDFPSYFAP 181
>gi|355748556|gb|EHH53039.1| hypothetical protein EGM_13597, partial [Macaca fascicularis]
Length = 210
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 82 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 139
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 140 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTMVQ 190
Query: 203 Y 203
Y
Sbjct: 191 Y 191
>gi|201066433|gb|ACH92566.1| Trf-proximal homolog (predicted) [Otolemur garnettii]
Length = 204
Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 76 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 133
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 134 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAIYGPADTMVQ 184
Query: 203 Y 203
Y
Sbjct: 185 Y 185
>gi|195339080|ref|XP_002036149.1| GM13189 [Drosophila sechellia]
gi|194130029|gb|EDW52072.1| GM13189 [Drosophila sechellia]
Length = 252
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ + AD+ +M K+ + K + + G +++ GDF ++
Sbjct: 68 EYPASTFSIIDNGTGKQVAIVADNIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIK 127
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
+G V T ++ +GI++E+EY + +++ E L+ + + P +F P
Sbjct: 128 LGSV--TMMDHFKGILIEIEYKSCVILAYCWEMIREMLQGFLGIAVNKDFPSYFAP 181
>gi|355561689|gb|EHH18321.1| hypothetical protein EGK_14895 [Macaca mulatta]
Length = 204
Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 76 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 133
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 134 VEYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTMVQ 184
Query: 203 Y 203
Y
Sbjct: 185 Y 185
>gi|296198145|ref|XP_002746580.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20
[Callithrix jacchus]
Length = 217
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 89 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 146
Query: 143 VEYLPISSIEKSRQIMEEFLE 163
VEY P ++ EFL+
Sbjct: 147 VEYGPCVVASDCWSLLLEFLQ 167
>gi|149732185|ref|XP_001501272.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Equus caballus]
Length = 212
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
VEY P ++ EFL+ + G P P Y T VQ
Sbjct: 142 VEYGPCVVPSDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTVVQ 192
Query: 203 Y 203
Y
Sbjct: 193 Y 193
>gi|402591273|gb|EJW85203.1| hypothetical protein WUBG_03887 [Wuchereria bancrofti]
Length = 197
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 78/201 (38%), Gaps = 38/201 (18%)
Query: 25 VSQCVESINGVKEGRWKATLTFYKPMLRDQSLA--------SEFPRDFLGIMVPE----C 72
+ + +E GVK G + T +KP Q S FP+ I E C
Sbjct: 16 IERAIEGEGGVKGGIFTVDSTPFKPNDNVQGAINHVFILHHSRFPQSTFTIAPNEKQKHC 75
Query: 73 PNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMR-VALNFE--GFQYQLGDFQLRVGKVV 129
P +D I+ KL S ++ A FE G +Y L DF +R G
Sbjct: 76 PRAI------------SDRGFDCILAKLSSGLVQDTAGKFEVSGHEYTLQDFIIRTGNA- 122
Query: 130 PTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYG 189
+ +G+++EVEY P + ++EF+ ++ P H + +P ++
Sbjct: 123 -SMGVISKGVIVEVEYAPSCVASQCGNFLQEFIAVF--------FPDH-VADKPVVLQKA 172
Query: 190 LSDHYSSQHTAVQYATVMAQL 210
+ YS+ T QY + +
Sbjct: 173 QPEPYSALDTMHQYLDIFQNM 193
>gi|194767069|ref|XP_001965641.1| GF22602 [Drosophila ananassae]
gi|190619632|gb|EDV35156.1| GF22602 [Drosophila ananassae]
Length = 246
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 57/116 (49%), Gaps = 8/116 (6%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ L AD+ +M K+ + K + + G +++ GDF ++
Sbjct: 68 EYPASTFSIIDNGTGKQVALVADNIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIK 127
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMP 180
+G V T ++ +GI++E+EY + +++ E L+ + + P +F P
Sbjct: 128 LGSV--TMMDHFKGILVEIEYKSCVILAYCWEMIREVLQGFLGISVSKDFPSYFAP 181
>gi|410959166|ref|XP_003986183.1| PREDICTED: mediator of RNA polymerase II transcription subunit 20
[Felis catus]
Length = 212
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLE 163
VEY P ++ EFL+
Sbjct: 142 VEYGPCVVASDCWNLLLEFLQ 162
>gi|291396190|ref|XP_002714442.1| PREDICTED: Trf-proximal protein homolog [Oryctolagus cuniculus]
Length = 212
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 84 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 141
Query: 143 VEYLPISSIEKSRQIMEEFLE 163
VEY P ++ EFL+
Sbjct: 142 VEYGPCVVASDCWSLLLEFLQ 162
>gi|198468051|ref|XP_002133916.1| GA28197 [Drosophila pseudoobscura pseudoobscura]
gi|198146229|gb|EDY72543.1| GA28197 [Drosophila pseudoobscura pseudoobscura]
Length = 256
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLR 124
E P F +I + +++ L ADS +M K+ + K + + G +++ GDF ++
Sbjct: 68 EYPASTFSIIDSGTGKQVSLVADSIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIK 127
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHF 178
+G V T E+ +GI++E+EY + +++ E L+ + + P +F
Sbjct: 128 LGSV--TMMEHFKGILIEIEYKSCMILAYCWEMIREMLQGFLNINVSKDFPTYF 179
>gi|355701770|gb|AES01787.1| mediator complex subunit 20 [Mustela putorius furo]
Length = 207
Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 14/120 (11%)
Query: 87 LEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEV 143
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +EV
Sbjct: 80 LIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVEV 137
Query: 144 EYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQY 203
EY P ++ EFL+ + G P P Y T +QY
Sbjct: 138 EYGPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTMIQY 188
>gi|195165467|ref|XP_002023560.1| GL19867 [Drosophila persimilis]
gi|194105694|gb|EDW27737.1| GL19867 [Drosophila persimilis]
Length = 256
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQ---SYKMRVALNFEGFQYQLGDFQLR 124
E P F +I + +++ L ADS +M K+ + K + + G +++ GDF ++
Sbjct: 68 EYPASTFSIIDSGTGKQVSLVADSIFDLLMLKMTNTFTSKKQTKIESRGARFEYGDFVIK 127
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSI----EKSRQIMEEFLEI 164
+G V T E+ +GI++E+EY + E R++++ FL I
Sbjct: 128 LGSV--TMMEHFKGILIEIEYKSCMILAYCWEMIREMLQGFLNI 169
>gi|444725486|gb|ELW66050.1| Mediator of RNA polymerase II transcription subunit 20 [Tupaia
chinensis]
Length = 378
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 209 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 266
Query: 143 VEYLPISSIEKSRQIMEEFLE 163
VEY P ++ EFL+
Sbjct: 267 VEYGPCVVASDCWSLLLEFLQ 287
>gi|167206807|gb|ABZ11038.1| Trf-proximal homolog (predicted) [Callithrix jacchus]
Length = 204
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 86 VLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +E
Sbjct: 76 CLIADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVE 133
Query: 143 VEYLPISSIEKSRQIMEEFLE 163
VEY P ++ EFL+
Sbjct: 134 VEYGPCVVASDCWSLLLEFLQ 154
>gi|109071146|ref|XP_001085725.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Macaca mulatta]
Length = 212
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 89 ADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEY 145
AD+ +M KL+ + + G +YQ DF ++VG V T + RGI +EVEY
Sbjct: 87 ADTNFDVLMVKLKGFFQSAKASKIETRGTRYQYCDFLVKVGTV--TMGPSARGISVEVEY 144
Query: 146 LPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQY 203
P ++ EFL+ + G P P Y T VQY
Sbjct: 145 GPCVVASDCWSLLLEFLQ---------SFLGSHTPGAPAVFGNRHDAVYGPADTMVQY 193
>gi|452819201|gb|EME26269.1| hypothetical protein Gasu_60940 [Galdieria sulphuraria]
Length = 238
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEY 145
+ +ADS +MEKLQ+ + + ++ +G +Y GDF +R+G V + +V+++ Y
Sbjct: 88 LFKADSQASQLMEKLQTVQTKSTVSLKGAEYSFGDFIVRLGSVFERKIPSF--VVVQILY 145
Query: 146 LPI 148
P
Sbjct: 146 APF 148
>gi|154419120|ref|XP_001582577.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121916813|gb|EAY21591.1| hypothetical protein TVAG_013560 [Trichomonas vaginalis G3]
Length = 191
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 79 VIRTQRIVLEADSTIQTIMEKLQ-SYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLR 137
++ T+ L D+ Q++++ + + + +G QLGDF++R G V E
Sbjct: 68 ILITKSTTLVGDANFQSVLKDIGLPFDKTLIFKIDGSMAQLGDFKVRYG--VSIVKEKQV 125
Query: 138 GIVMEVEYLPISSIEKSRQIM 158
GI+ ++EYLP++ + + ++
Sbjct: 126 GILFDIEYLPVTKLSVNSDLI 146
>gi|312094904|ref|XP_003148182.1| mediator protein 20 [Loa loa]
gi|307756654|gb|EFO15888.1| mediator protein 20 [Loa loa]
Length = 197
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 38/201 (18%)
Query: 25 VSQCVESINGVKEGRWKATLTFYKPMLRDQSLA--------SEFPRDFLGIMVPE----C 72
+ + +E GVK G + T +KP Q S FP+ I E C
Sbjct: 16 IERAIEGEGGVKSGIFTVDSTPFKPSDNVQGAINHVFILHHSRFPQSTFTIAPNEKQKHC 75
Query: 73 PNKYFFVIRTQRIVLEADSTIQTIMEKLQSYKMR-VALNFE--GFQYQLGDFQLRVGKVV 129
P +D I+ KL S ++ A FE G +Y L DF +R G
Sbjct: 76 PRAI------------SDRGFDCILAKLSSGLVQDTAGKFEVSGHEYVLQDFIIRTGNA- 122
Query: 130 PTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYG 189
+ +G+++EVEY P + ++EF+ ++ P H + +P ++
Sbjct: 123 -SMGVISKGVIVEVEYAPSCVASQCSNFLQEFIGVF--------FPDH-VADKPAVLQKA 172
Query: 190 LSDHYSSQHTAVQYATVMAQL 210
+ Y++ T QY + +
Sbjct: 173 QPEPYNALDTMHQYLDIFQNM 193
>gi|256078689|ref|XP_002575627.1| hypothetical protein [Schistosoma mansoni]
gi|353231983|emb|CCD79338.1| hypothetical protein Smp_042780 [Schistosoma mansoni]
Length = 278
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLRVGKVVPTHSE 134
FV + L AD + + L+++ K ++ + +G +YQLGDF + + S
Sbjct: 72 FVFSDNQTALVADISFREFPGCLKAFYQRKKKLQVEAKGIKYQLGDFTINFITIFMGQSA 131
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFL 162
+++G ++EV + S I R +++ F+
Sbjct: 132 SVKGYLIEVCFHASSMIHLCRDVLKAFI 159
>gi|410633272|ref|ZP_11343919.1| hypothetical protein GARC_3832 [Glaciecola arctica BSs20135]
gi|410147441|dbj|GAC20786.1| hypothetical protein GARC_3832 [Glaciecola arctica BSs20135]
Length = 545
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 68 MVPECPNKYFFVIRTQRIVLE-ADSTIQTIMEKLQ-----SYKMRVALNFEGFQYQLGDF 121
+VP P ++ VI Q I LE + I + + ++ ++ + +++N G+Q Q G+F
Sbjct: 331 LVP--PLEFLPVIEGQAISLEIGEWVIHSALTQISQWQSMAFNLPISVNISGYQIQQGNF 388
Query: 122 QLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQI---------------MEEFLEIWQ 166
R+ ++ TH E + +E+E L S++ ++ +++F +
Sbjct: 389 ATRIAALLATHPE-VNPFCLELEILETSALHDISKVSATMNACHDLGVRFALDDFGTGYS 447
Query: 167 EALSKRTLPGHFMPMEPNFIEYGLSD 192
R LP + ++ +F+ L D
Sbjct: 448 SLTHLRRLPAQLIKIDQSFVRDMLED 473
>gi|327259166|ref|XP_003214409.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Anolis carolinensis]
Length = 219
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 14/128 (10%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVALN---FEGFQYQLGDFQLRVGKVVPTHSENLRGIVME 142
L++D+ +M KL+ + N +G +YQ DF ++VG V T ++ GI +E
Sbjct: 91 CLKSDANCDVLMVKLKGFFQNTKGNKIESQGTRYQYCDFLVKVGTV--TIGPSVLGISVE 148
Query: 143 VEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQ 202
EY P ++ EF++ + G P P+ YS VQ
Sbjct: 149 AEYCPCVVANDCWNLLMEFMQ---------SFMGSHAPGIPSVFGNKHDSIYSPGDMMVQ 199
Query: 203 YATVMAQL 210
Y + Q+
Sbjct: 200 YMELFNQI 207
>gi|358338545|dbj|GAA56955.1| mediator of RNA polymerase II transcription subunit 20 [Clonorchis
sinensis]
Length = 391
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 78 FVIRTQRIVLEADSTIQTIMEKLQ-SYKMRVALNFEG--FQYQLGDFQLRVGKVVPTHSE 134
FV +L AD + L+ SY+ + L EG +Y+LGDF + + S
Sbjct: 183 FVFTDNNTLLVADLAFREFAGYLRASYQRKKKLQVEGKGMKYRLGDFGINFVTLFMGQSA 242
Query: 135 NLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHFMPM-EPNFIEYGLSDH 193
N+RG ++EV + I I+ F+ + LP P+ +PN E+ S
Sbjct: 243 NVRGYLIEVTFEASCIIHLCGDILRAFI--------TQVLPDVCPPINDPNSAEHIFSQS 294
Query: 194 YSSQHTAVQYAT 205
+ H AVQ +
Sbjct: 295 F---HRAVQTGS 303
>gi|334119155|ref|ZP_08493242.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Microcoleus vaginatus FGP-2]
gi|333458626|gb|EGK87243.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Microcoleus vaginatus FGP-2]
Length = 565
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 13/183 (7%)
Query: 9 WQPNVGTSVNSQILNEVSQCVESINGVKEGRWKATLTFYKPMLRDQSLASEFPR--DFL- 65
W ++G SV I ++ C+E+IN V KP+ Q +A + D +
Sbjct: 172 WGHDIGDSVLCSIAQRLTNCIENINIVARLEAAEFALILKPVAEKQDVAKIAQKILDIVS 231
Query: 66 -GIMVPECPNKYFFVIRTQRIVL------EADSTIQTIMEKLQSYKMRVALNFEGFQYQL 118
G+++ +C +V + I L + D ++ + + + N+ + +
Sbjct: 232 QGMIIKDCE---VYVTASMGICLYPGDGTDGDEMLKNAYIAMYHSQQKGGNNYHFYTAKN 288
Query: 119 GDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHF 178
+F + + L+ E+ Y P I+ + I E L W R PG F
Sbjct: 289 ANFFINTLLQESSLRHALKSSEFEIYYQPQIEIKTGKIIGAEALVRWNHPERGRVSPGEF 348
Query: 179 MPM 181
+PM
Sbjct: 349 IPM 351
>gi|195438950|ref|XP_002067395.1| GK16399 [Drosophila willistoni]
gi|194163480|gb|EDW78381.1| GK16399 [Drosophila willistoni]
Length = 253
Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 71 ECPNKYFFVIRT---QRIVLEADSTIQTIMEKLQSY---KMRVALNFEGFQYQLGDFQLR 124
E P F +I +++ L AD+ +M K+ + K + + G +++ GDF ++
Sbjct: 67 EYPASTFSIIDNGTGKQVSLVADNIFDLLMLKMTATFASKKQTKIESRGARFEYGDFVIK 126
Query: 125 VGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKRTLPGHF 178
+G V T E+ +GI++E+EY + +++ E L+ + + P +F
Sbjct: 127 LGSV--TMMEHFKGILIEIEYKSCVILSYCWEMIREMLQGFLGMQVPKDYPNYF 178
>gi|268553685|ref|XP_002634829.1| C. briggsae CBR-MDT-20 protein [Caenorhabditis briggsae]
gi|74790234|sp|Q61A42.1|MED20_CAEBR RecName: Full=Mediator of RNA polymerase II transcription subunit
20; AltName: Full=Mediator complex subunit 20
Length = 198
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 109 LNFEGFQYQL-GDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQE 167
+ G +Y + D+ +RVG T ++G+V+EVEY P I + R++M EF+ ++
Sbjct: 102 IEINGNEYNIHSDWTVRVGTA--TQGTTVKGVVVEVEYDPTVIIVQCREMMAEFI---KQ 156
Query: 168 ALSK--RTLPGHFMPMEPNFIEYGLSDHYSSQHTAVQYATVMAQL 210
+K T P F E + YS+ T QY + A+L
Sbjct: 157 VFNKYHETQPEIFKITEK-------PERYSTLDTMWQYLQIAAKL 194
>gi|429242436|ref|NP_593728.2| mediator complex subunit Med20 [Schizosaccharomyces pombe 972h-]
gi|380865397|sp|Q10317.2|MED20_SCHPO RecName: Full=Mediator of RNA polymerase II transcription subunit
20; AltName: Full=Mediator complex subunit 20
gi|347834115|emb|CAA93688.2| mediator complex subunit Med20 [Schizosaccharomyces pombe]
Length = 193
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 86 VLEADSTIQTIMEKLQSYKMRVALNFEGFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEY 145
+++A+ ++ I+ + + + R + EG Y++G F++ + V+ +GI+ V Y
Sbjct: 73 MIDAEPELEDIIVRTKLWNFRQSFTIEGSIYEVGSFKVAIANVL--QKSVWKGILFHVTY 130
Query: 146 LPISSIEKSRQIMEEFL 162
S++ +R I++EF
Sbjct: 131 DGTESVDLARPIIQEFF 147
>gi|193666809|ref|XP_001949764.1| PREDICTED: mediator of RNA polymerase II transcription subunit
20-like [Acyrthosiphon pisum]
Length = 214
Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 113 GFQYQLGDFQLRVGKVVPTHSENLRGIVMEVEYLPISSIEKSRQIMEEFLEIWQEALSKR 172
G +++L DF +++G + H N++GI++E EY P ++ EFL+ + +
Sbjct: 112 GPRFELNDFVIKIGAININH--NVKGIIVEAEYRPCVVFGLCWDMLREFLQGFLGSCVSN 169
Query: 173 TLPGHF 178
P +F
Sbjct: 170 IPPHYF 175
>gi|357451341|ref|XP_003595947.1| hypothetical protein MTR_2g064000 [Medicago truncatula]
gi|355484995|gb|AES66198.1| hypothetical protein MTR_2g064000 [Medicago truncatula]
Length = 61
Score = 36.2 bits (82), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 141 MEVEYLPISSIEKSRQIMEEFLEIWQ 166
ME+EYL ISS+E + IMEEF+EI +
Sbjct: 1 MEIEYLLISSLENDKPIMEEFIEICE 26
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,005,436,974
Number of Sequences: 23463169
Number of extensions: 107489219
Number of successful extensions: 281006
Number of sequences better than 100.0: 155
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 280908
Number of HSP's gapped (non-prelim): 165
length of query: 222
length of database: 8,064,228,071
effective HSP length: 137
effective length of query: 85
effective length of database: 9,144,741,214
effective search space: 777303003190
effective search space used: 777303003190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 74 (33.1 bits)